mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 66,457 | C→A | 100% | V32F (GTT→TTT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase |
| RA | 97,880 | C→T | 100% | S265F (TCC→TTC) | murD → | UDP‑N‑acetylmuramoyl‑L‑alanine:D‑glutamate ligase |
| RA | 150,537 | A→C | 2.3% | D139E (GAT→GAG) | yadC ← | fimbrial‑like adhesin protein |
| RA | 167,632 | C→A | 100% | P50Q (CCG→CAG) | fhuA → | ferrichrome outer membrane transporter |
| RA | 274,547 | A→G | 100% | intergenic (‑206/‑2) | insH ← / → mmuP | IS5 transposase and trans‑activator/S‑methylmethionine transporter |
| MC JC | 274,733 | Δ97,240 bp | 100% | [mmuP]–[mhpD] | 90 genes [mmuP], mmuM, afuC, afuB, insB, insA, ykgN, yagB, yagA, yagE, yagF, yagG, yagH, yagI, argF, insB, insA, yagJ, yagK, yagL, yagM, yagN, intF, yagP, yagQ, yagR, yagS, yagT, yagU, ykgJ, yagV, yagW, yagX, yagY, yagZ, ykgK, ykgL, Y75_p4288, Y75_p4289, eaeH, insE, insF, ykgA, ykgB, ykgI, ykgC, ykgD, ykgE, ykgF, ykgG, ykgH, betA, betB, betI, betT, yahA, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, [mhpD] |
|
| RA | 547,694 | A→G | 100% | intergenic (+123/‑1156) | fdrA → / → ylbF | acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain/hypothetical protein |
| RA | 547,831 | +G | 100% | intergenic (+260/‑1019) | fdrA → / → ylbF | acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain/hypothetical protein |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 569,996 | G→C | 100% | intergenic (+345/‑120) | ybcK → / → ybcL | recombinase/kinase inhibitor |
| RA | 749,354 | C→A | 100% | P17P (CCG→CCT) | ybgO ← | fimbrial‑like adhesin protein |
| RA | 758,440 | C→A | 100% | F110L (TTC→TTA) | sdhB → | succinate dehydrogenase, FeS subunit |
| RA | 887,234 | C→A | 100% | A176A (GCG→GCT) | ybjJ ← | transporter |
| RA | 987,574 | G→T | 100% | intergenic (‑170/+433) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | diguanylate cyclase |
| RA | 1,097,580 | C→T | 16.9% | intergenic (+329/+226) | ycdU → / ← serX | inner membrane protein/tRNA‑Ser |
| RA | 1,170,573 | C→T | 100% | intergenic (‑164/‑77) | ycfQ ← / → ycfR | DNA‑binding transcriptional regulator/hypothetical protein |
| MC JC | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| RA | 1,318,876 | G→A | 100% | P21S (CCT→TCT) | trpA ← | tryptophan synthase subunit alpha |
| MC JC | 1,413,639 | Δ23,060 bp | 100% | [ydaO]–ynaE | 30 genes [ydaO], intR, ydaQ, ydaC, lar, recT, recE, racC, ydaE, kil, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, insH, stfR, tfaR, pinR, ynaE |
|
| RA | 1,483,588 | G→A | 100% | L322L (CTG→CTA) | ynbD → | phosphatase, inner membrane protein |
| RA | 1,496,775 | Δ1 bp | 100% | coding (11/924 nt) | ydcI ← | DNA‑binding transcriptional regulator |
| RA | 1,615,814 | C→A | 100% | D202Y (GAC→TAC) | yneI ← | aldehyde dehydrogenase |
| RA | 1,669,599 | Δ1 bp | 100% | coding (680/1221 nt) | dgsA ← | DNA‑binding transcriptional repressor |
| RA | 1,844,073 | G→A | 100% | intergenic (‑224/‑12) | ynjH ← / → gdhA | hypothetical protein/glutamate dehydrogenase, NADP‑specific |
| RA | 1,918,872 | T→A | 100% | S301T (TCC→ACC) | yebS → | inner membrane protein |
| RA | 1,973,476 | G→A | 100% | L310L (CTC→CTT) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | 2,005,401 | C→T | 100% | E115K (GAA→AAA) | fliC ← | flagellar filament structural protein |
| RA | 2,170,094 | C→A | 100% | intergenic (‑437/+32) | ogrK ← / ← yegR | DNA‑binding transcriptional regulator/hypothetical protein |
| RA | 2,262,756 | A→C | 2.1% | intergenic (‑126/+297) | yeiC ← / ← fruA | kinase/fused fructose‑specific PTS enzyme IIB'BC components |
| MC JC | 2,320,794 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| RA | 2,406,075 | C→T | 100% | V51I (GTT→ATT) | nuoF ← | NADH:ubiquinone oxidoreductase, chain F |
| RA | 2,416,102 | G→A | 100% | L233L (CTG→TTG) | yfbS ← | transporter |
| RA | 2,538,628 | C→T | 100% | T258T (ACC→ACT) | cysK → | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| JC | 2,865,274 | +46 bp | 67.8% | coding (817/876 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| JC | 2,865,278 | +92 bp | 41.2% | coding (813/876 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,111 | A→G | 100% | intergenic (‑21/+159) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/outer membrane lipoprotein |
| RA | 3,003,330 | G→A | 100% | L371L (CTC→CTT) | ygeV ← | DNA‑binding transcriptional regulator |
| RA | 3,049,815 | G→T | 100% | R387S (CGC→AGC) | visC ← | oxidoreductase |
| RA | 3,397,813 | C→G | 100% | D141H (GAT→CAT) | yhdE ← | hypothetical protein |
| MC JC | 3,742,936 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| MC JC | 3,746,911 | Δ1,199 bp | 100% | insH | insH | |
| RA | 3,750,122 | Δ1 bp | 96.2% | coding (365/1416 nt) | tnaA ← | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| RA | 3,750,123 | C→T | 3.8% | G122S (GGC→AGC) | tnaA ← | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| MC JC | 3,750,591 | Δ1,199 bp | 100% | insH | insH | |
| RA | 3,898,657 | C→G | 100% | L259V (CTG→GTG) | yiaJ → | DNA‑binding transcriptional repressor |
| MC JC | 3,958,123 | Δ34 bp | 100% | coding (1156‑1189/1287 nt) | dctA → | C4‑dicarboxylic acid, orotate and citrate transporter |
| RA | 4,090,749 | A→T | 100% | Q135L (CAG→CTG) | malQ → | 4‑alpha‑glucanotransferase |
| RA | 4,165,991 | A→C | 100% | K43T (AAA→ACA) | rpsL → | 30S ribosomal protein S12 |
| MC JC | 4,310,363 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| RA | 4,371,271 | Δ2 bp | 100% | intergenic (‑6/+299) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,546,535 | T→A | 100% | intergenic (+296/‑182) | fimB → / → fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 1288307–1288375 | 1288516–1288459 | 85–210 | 207 [206] | [206] 209 | ychS | hypothetical protein |
| * | * | ÷ | NC_007779 | 2176983 | 2178208 | 1226 | 356 [1] | [0] 259 | insH | insH |
| * | * | ÷ | NC_007779 | 3128834–3130002 | 3147473 | 17472–18640 | 211 [206] | [0] 263 | [yghO]–[yghZ] | 19 genes [yghO], [insH], yghQ, yghR, yghS, yghT, pitB, gss, yghU, hybG, hybF, hybE, hybD, hybC, hybB, hybA, hybO, yghW, [yghZ] |
| * | * | ÷ | NC_007779 | 3261134–3262332 | 3262337 | 6–1204 | 340 [1] | [0] 491 | insH–[tdcD] | insH, [tdcD] |
| Unassigned new junction evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | 15391 = | NA (NA) | 8 (0.030) | 8/172 | NT | 2.6% | intergenic (+93/‑54) | dnaJ/insL | chaperone Hsp40, co‑chaperone with DnaK/IS186/IS421 transposase |
| ? | NC_007779 | = 458023 | 317 (1.150) | intergenic (+99/‑89) | clpX/lon | ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La | |||||
| * | ? | NC_007779 | 49661 = | 275 (1.000) | 30 (0.110) | 20/180 | NT | 9.8% | intergenic (+30/‑162) | kefC/folA | potassium:proton antiporter/dihydrofolate reductase |
| ? | NC_007779 | 273179 = | NA (NA) | coding (1109/1146 nt) | ykfC | hypothetical protein | |||||
| * | ? | NC_007779 | = 49664 | 266 (0.970) | 20 (0.070) | 17/180 | NT | 7.0% | intergenic (+33/‑159) | kefC/folA | potassium:proton antiporter/dihydrofolate reductase |
| ? | NC_007779 | = 274373 | NA (NA) | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/S‑methylmethionine transporter | |||||
| * | ? | NC_007779 | 273179 = | NA (NA) | 185 (0.670) | 111/180 | NT | 69.0% | coding (1109/1146 nt) | ykfC | hypothetical protein |
| ? | NC_007779 | 657877 = | 83 (0.300) | coding (164/210 nt) | cspE | DNA‑binding transcriptional repressor | |||||
| * | ? | NC_007779 | = 274373 | NA (NA) | 169 (0.610) | 104/180 | NT | 66.8% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/S‑methylmethionine transporter |
| ? | NC_007779 | = 657880 | 84 (0.310) | coding (167/210 nt) | cspE | DNA‑binding transcriptional repressor | |||||
| * | ? | NC_007779 | 289856 = | NA (NA) | 222 (1.270) | 97/114 | NT | 100% | intergenic (‑327/+17) | argF/insB | ornithine carbamoyltransferase 2, chain F/IS1 transposase InsAB' |
| ? | NC_007779 | = 2176982 | 0 (0.000) | intergenic (‑281/‑69) | gatB/insH | PTS system galactitol‑specific transporter subunit IIB/IS5 element protein | |||||
| * | ? | NC_007779 | 380484 = | NA (NA) | 240 (0.870) | 129/180 | NT | NA | intergenic (‑418/‑46) | yaiO/insC | hypothetical protein/IS2 insertion element repressor InsA |
| ? | NC_007779 | = 381407 | NA (NA) | coding (510/906 nt) | insD | IS2 insertion element transposase InsAB' | |||||
| * | ? | NC_007779 | 381401 = | NA (NA) | 267 (0.990) | 136/176 | NT | NA | coding (504/906 nt) | insD | IS2 insertion element transposase InsAB' |
| ? | NC_007779 | = 381812 | NA (NA) | coding (303/387 nt) | yaiF | hypothetical protein | |||||
| * | ? | NC_007779 | 458011 = | 325 (1.180) | 9 (0.030) | 9/174 | NT | 2.8% | intergenic (+87/‑101) | clpX/lon | ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_007779 | = 608570 | NA (NA) | intergenic (+170/+112) | insL/entD | IS186/IS421 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_007779 | = 458023 | 317 (1.150) | 3 (0.010) | 3/172 | NT | 0.98% | intergenic (+99/‑89) | clpX/lon | ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_007779 | = 608570 | NA (NA) | intergenic (+170/+112) | insL/entD | IS186/IS421 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_007779 | = 608570 | NA (NA) | 281 (1.060) | 138/174 | NT | 92.7% | intergenic (+170/+112) | insL/entD | IS186/IS421 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
| ? | NC_007779 | 1305025 = | 23 (0.080) | coding (413/921 nt) | oppB | oligopeptide transporter subunit | |||||
| * | ? | NC_007779 | = 654213 | 0 (0.000) | 222 (0.850) | 124/170 | NT | 100% | intergenic (+448/‑68) | citB/insH | DNA‑binding response regulator in two‑component regulatory system with citA/IS5 element protein |
| ? | NC_007779 | 655413 = | 0 (0.000) | intergenic (+152/‑1566) | insH/crcA | IS5 element protein/palmitoyl transferase for Lipid A | |||||
| * | ? | NC_007779 | 1209367 = | 177 (0.640) | 61 (0.270) | 48/148 | NT | 29.1% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | NC_007779 | 1211196 = | 151 (0.670) | intergenic (‑500/‑66) | tfaE/pin | tail fiber assembly protein/site‑specific DNA recombinase | |||||
| * | ? | NC_007779 | = 1209382 | 179 (0.650) | 58 (0.260) | 48/148 | NT | 28.0% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | NC_007779 | = 1211179 | 151 (0.670) | intergenic (‑483/‑83) | tfaE/pin | tail fiber assembly protein/site‑specific DNA recombinase | |||||
| * | ? | NC_007779 | 1221489 = | 3 (0.010) | 252 (0.940) | 131/176 | NT | 98.8% | intergenic (+711/+2393) | ymgF/ymgD | hypothetical protein/hypothetical protein |
| ? | NC_007779 | 1301041 = | NA (NA) | intergenic (+219/‑89) | ychE/insC | inner membrane protein/IS2 element protein | |||||
| * | ? | NC_007779 | = 1221495 | 0 (0.000) | 226 (0.820) | 120/180 | NT | 100% | intergenic (+717/+2387) | ymgF/ymgD | hypothetical protein/hypothetical protein |
| ? | NC_007779 | = 1302369 | NA (NA) | intergenic (+11/‑527) | insD/oppA | IS2 element protein/oligopeptide transporter subunit | |||||
| * | ? | NC_007779 | = 1305037 | 27 (0.100) | 232 (0.880) | 119/172 | NT | 90.0% | coding (425/921 nt) | oppB | oligopeptide transporter subunit |
| ? | NC_007779 | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/transposase | |||||
| * | ? | NC_007779 | 1397758 = | NA (NA) | 246 (0.890) | 123/180 | NT | 100% | intergenic (‑122/‑32) | ynaI/insH | inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_007779 | 1672777 = | 0 (0.000) | intergenic (+111/‑313) | ynfM/asr | transporter/acid shock‑inducible periplasmic protein | |||||
| * | ? | NC_007779 | = 1672780 | 0 (0.000) | 237 (0.860) | 124/180 | NT | 100% | intergenic (+114/‑310) | ynfM/asr | transporter/acid shock‑inducible periplasmic protein |
| ? | NC_007779 | 1980209 = | NA (NA) | intergenic (‑289/+146) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein | |||||
| * | ? | NC_007779 | 1907280 = | 9 (0.030) | 278 (1.010) | 137/180 | NT | 96.9% | intergenic (+307/‑122) | yobD/yebN | inner membrane protein/inner membrane protein |
| ? | NC_007779 | = 2412225 | NA (NA) | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/aminotransferase | |||||
| * | ? | NC_007779 | = 1907288 | 14 (0.050) | 242 (0.880) | 118/180 | NT | 94.5% | intergenic (+315/‑114) | yobD/yebN | inner membrane protein/inner membrane protein |
| ? | NC_007779 | 2411458 = | NA (NA) | intergenic (‑147/+15) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein | |||||
| * | ? | NC_007779 | 1980091 = | 0 (0.000) | 185 (0.670) | 100/180 | NT | 100% | intergenic (‑171/+264) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein |
| ? | NC_007779 | 1980209 = | NA (NA) | intergenic (‑289/+146) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein | |||||
| * | ? | NC_007779 | = 1980095 | 0 (0.000) | 276 (1.010) | 133/178 | NT | 100% | intergenic (‑175/+260) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein |
| ? | NC_007779 | 2176984 = | NA (NA) | intergenic (‑283/‑67) | gatB/insH | PTS system galactitol‑specific transporter subunit IIB/IS5 element protein | |||||
| * | ? | NC_007779 | 2178209 = | 0 (0.000) | 245 (0.890) | 119/180 | NT | 100% | intergenic (+178/+184) | insH/gatZ | IS5 element protein/D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
| ? | NC_007779 | = 2412225 | NA (NA) | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/aminotransferase | |||||
| * | ? | NC_007779 | 2320794 = | NA (NA) | 240 (0.870) | 121/180 | NT | 100% | intergenic (+633/+11) | rcsB/insD | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/IS2 element protein |
| ? | NC_007779 | = 2589834 | 0 (0.000) | intergenic (+470/‑69) | acrD/yffB | aminoglycoside/multidrug efflux system/hypothetical protein | |||||
| * | ? | NC_007779 | = 2322124 | NA (NA) | 342 (1.240) | 153/180 | NT | 100% | intergenic (‑91/‑2589) | insC/atoS | IS2 element protein/sensory histidine kinase in two‑component regulatory system with AtoC |
| ? | NC_007779 | 2589830 = | 0 (0.000) | intergenic (+466/‑73) | acrD/yffB | aminoglycoside/multidrug efflux system/hypothetical protein | |||||
| * | ? | NC_007779 | 2411458 = | NA (NA) | 276 (1.000) | 137/180 | NT | 96.8% | intergenic (‑147/+15) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein |
| ? | NC_007779 | = 2985055 | 9 (0.030) | coding (553/1230 nt) | yqeG | transporter | |||||
| * | ? | NC_007779 | 2411459 = | NA (NA) | 3 (0.010) | 3/178 | NT | 1.1% | intergenic (‑148/+14) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein |
| ? | NC_007779 | 2941449 = | 279 (1.010) | intergenic (‑226/+125) | gcvA/ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein | |||||
| * | ? | NC_007779 | 2411459 = | NA (NA) | 5 (0.020) | 5/178 | NT | 1.6% | intergenic (‑148/+14) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein |
| ? | NC_007779 | = 2941530 | 315 (1.140) | intergenic (‑307/+44) | gcvA/ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein | |||||
| * | ? | NC_007779 | 2411459 = | NA (NA) | 3 (0.010) | 3/178 | NT | 0.95% | intergenic (‑148/+14) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein |
| ? | NC_007779 | 2941536 = | 315 (1.140) | intergenic (‑313/+38) | gcvA/ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein | |||||
| * | ? | NC_007779 | = 2412224 | NA (NA) | 5 (0.020) | 5/178 | NT | 1.6% | intergenic (‑54/‑783) | insA/yfbQ | IS1 element protein/aminotransferase |
| ? | NC_007779 | = 2941546 | 315 (1.140) | intergenic (‑323/+28) | gcvA/ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein | |||||
| * | ? | NC_007779 | = 2412225 | NA (NA) | 3 (0.010) | 3/180 | NT | 1.1% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/aminotransferase |
| ? | NC_007779 | 2941423 = | 278 (1.010) | intergenic (‑200/+151) | gcvA/ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein | |||||
| * | ? | NC_007779 | = 2412225 | NA (NA) | 257 (0.930) | 128/180 | NT | 95.9% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/aminotransferase |
| ? | NC_007779 | 2985047 = | 11 (0.040) | coding (545/1230 nt) | yqeG | transporter | |||||
| * | ? | NC_007779 | 3147474 = | 0 (0.000) | 254 (0.920) | 119/180 | NT | 100% | coding (922/1041 nt) | yghZ | aldo‑keto reductase |
| ? | NC_007779 | = 3262328 | NA (NA) | coding (1188/1296 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | NC_007779 | = 3186081 | NA (NA) | 296 (1.090) | 140/178 | NT | 99.3% | coding (26/2466 nt) | yqiG | outer membrane usher protein |
| ? | NC_007779 | 3512753 = | 2 (0.010) | coding (529/1026 nt) | cytR | DNA‑binding transcriptional dual regulator | |||||
| * | ? | NC_007779 | = 3261133 | 0 (0.000) | 296 (1.150) | 133/168 | NT | 100% | intergenic (‑59/‑69) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | NC_007779 | = 3748109 | NA (NA) | intergenic (+150/+962) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_007779 | 3261134 = | NA (NA) | 227 (0.820) | 122/180 | NT | 100% | intergenic (‑60/‑68) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | NC_007779 | 3265774 = | 0 (0.000) | coding (110/990 nt) | tdcB | catabolic threonine dehydratase, PLP‑dependent | |||||
| * | ? | NC_007779 | 3261135 = | NA (NA) | 299 (1.100) | 144/178 | NT | 100% | intergenic (‑61/‑67) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | NC_007779 | 3262338 = | 0 (0.000) | coding (1178/1296 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | NC_007779 | = 3265777 | 0 (0.000) | 297 (1.080) | 133/180 | NT | 100% | coding (107/990 nt) | tdcB | catabolic threonine dehydratase, PLP‑dependent |
| ? | NC_007779 | 3365411 = | NA (NA) | intergenic (+368/+146) | yhcD/insH | outer membrane protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_007779 | = 3512759 | 6 (0.020) | 275 (1.010) | 126/178 | NT | 97.9% | coding (535/1026 nt) | cytR | DNA‑binding transcriptional dual regulator |
| ? | NC_007779 | = 3744262 | NA (NA) | intergenic (‑90/+31) | insC/yidZ | IS2 element protein/DNA‑binding transcriptional regulator | |||||
| * | ? | NC_007779 | = 3744263 | NA (NA) | 322 (1.170) | 135/180 | NT | 100% | intergenic (‑91/+30) | insC/yidZ | IS2 element protein/DNA‑binding transcriptional regulator |
| ? | NC_007779 | 3903274 = | 0 (0.000) | coding (37/825 nt) | bax | hypothetical protein | |||||
| * | ? | NC_007779 | 3746911 = | NA (NA) | 310 (1.130) | 133/180 | NT | 100% | intergenic (‑509/‑68) | mdtL/insH | multidrug efflux system protein/IS5 element protein |
| ? | NC_007779 | = 3748646 | 0 (0.000) | intergenic (+687/+425) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_007779 | = 3748105 | NA (NA) | 329 (1.200) | 143/180 | NT | 100% | intergenic (+146/+966) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| ? | NC_007779 | 3748643 = | 0 (0.000) | intergenic (+684/+428) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_007779 | = 3903279 | 3 (0.010) | 309 (1.130) | 147/178 | NT | 99.0% | coding (42/825 nt) | bax | hypothetical protein |
| ? | NC_007779 | = 4504190 | NA (NA) | intergenic (+10/‑89) | insD/yjgW | IS2 insertion element transposase InsAB'/hypothetical protein | |||||
| * | ? | NC_007779 | 3987186 = | NA (NA) | 277 (1.020) | 137/178 | NT | 100% | intergenic (‑732/‑31) | slp/insH | outer membrane lipoprotein/IS5 transposase and trans‑activator |
| ? | NC_007779 | = 4009203 | 0 (0.000) | coding (1379/1623 nt) | yhiJ | hypothetical protein | |||||
| * | ? | NC_007779 | = 3988379 | NA (NA) | 307 (1.120) | 139/180 | NT | 100% | coding (746/783 nt) | yhiS | hypothetical protein |
| ? | NC_007779 | 4009199 = | 0 (0.000) | coding (1375/1623 nt) | yhiJ | hypothetical protein | |||||
| * | ? | NC_007779 | 4310363 = | NA (NA) | 322 (1.170) | 144/180 | NT | 100% | intergenic (‑287/‑68) | yjcS/insH | alkyl sulfatase/IS5 element protein |
| ? | NC_007779 | 4353540 = | 0 (0.000) | intergenic (‑118/+453) | dcuB/dcuR | C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS | |||||
| * | ? | NC_007779 | = 4311557 | NA (NA) | 283 (1.030) | 137/180 | NT | 100% | coding (921/1029 nt) | alsK | D‑allose kinase |
| ? | NC_007779 | = 4353543 | 0 (0.000) | intergenic (‑121/+450) | dcuB/dcuR | C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS | |||||
| * | ? | NC_007779 | 4355060 = | 0 (0.000) | 336 (1.220) | 148/180 | NT | 100% | coding (1281/1632 nt) | dcuS | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
| ? | NC_007779 | 4502861 = | NA (NA) | intergenic (+241/‑46) | intB/insC | integrase/IS2 insertion element repressor InsA | |||||
| * | ? | NC_007779 | = 4355066 | 8 (0.030) | 296 (1.100) | 138/176 | NT | 97.4% | coding (1275/1632 nt) | dcuS | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
| ? | NC_007779 | = 4504189 | NA (NA) | intergenic (+9/‑90) | insD/yjgW | IS2 insertion element transposase InsAB'/hypothetical protein | |||||
| * | ? | NC_007779 | 4547362 = | 258 (0.940) | 47 (0.190) | 41/162 | NT | 16.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | NC_007779 | 4547676 = | 241 (0.970) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | NC_007779 | = 4547370 | 269 (0.980) | 38 (0.150) | 32/162 | NT | 13.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | NC_007779 | = 4547666 | 241 (0.970) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||