#=GENOME_DIFF	1.0
#=AUTHOR	breseq 0.25c 
#=CREATED	19:01:49 06 Mar 2015
#=REFSEQ	/data/savita/refseq/NC_007779.gbk
#=READSEQ	4_D10_CAGATC_L004_R2_001.fastq
SNP	1	68	NC_007779	66457	A	frequency=1
SNP	2	74	NC_007779	97880	T	frequency=1
SNP	3	86	NC_007779	167632	A	frequency=1
SNP	4	102	NC_007779	274547	G	frequency=1
DEL	5	850,868	NC_007779	274733	97240	frequency=1
SNP	6	141	NC_007779	547694	G	frequency=1
INS	7	142	NC_007779	547831	G	frequency=1	insert_position=1
SNP	8	144	NC_007779	556858	T	frequency=1
SNP	9	146	NC_007779	569996	C	frequency=1
SNP	10	178	NC_007779	749354	A	frequency=1
SNP	11	181	NC_007779	758440	A	frequency=1
SNP	12	195	NC_007779	887234	A	frequency=1
SNP	13	206	NC_007779	987574	T	frequency=1
SNP	14	221	NC_007779	1093686	C	frequency=1
SNP	15	222	NC_007779	1097580	T	frequency=1.946702e-01
SNP	16	236	NC_007779	1170573	T	frequency=1
DEL	17	852,879	NC_007779	1301041	1336	frequency=1
SNP	18	252	NC_007779	1318876	A	frequency=1
DEL	19	853,882	NC_007779	1413639	23060	frequency=1
SNP	20	304	NC_007779	1483588	A	frequency=1
DEL	21	310	NC_007779	1496775	1	frequency=1
SNP	22	329	NC_007779	1615814	A	frequency=1
DEL	23	340	NC_007779	1669599	1	frequency=1
SNP	24	360	NC_007779	1844073	A	frequency=1
SNP	25	372	NC_007779	1918872	A	frequency=1
SNP	26	375	NC_007779	1973476	A	frequency=1
SNP	27	381	NC_007779	2005401	T	frequency=1
SNP	28	394	NC_007779	2170094	A	frequency=1
SNP	29	408	NC_007779	2262756	C	frequency=2.919006e-02
DEL	30	855,889	NC_007779	2320795	1336	frequency=1
SNP	31	430	NC_007779	2406075	T	frequency=1
SNP	32	436	NC_007779	2416102	A	frequency=1
SNP	33	458	NC_007779	2538628	T	frequency=1
INS	34	894	NC_007779	2865274	GCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACG	frequency=6.798478e-01
INS	35	895	NC_007779	2865278	TTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGC	frequency=3.571429e-01
SNP	36	506	NC_007779	2866111	G	frequency=1
SNP	37	520	NC_007779	3003330	A	frequency=1
SNP	38	528	NC_007779	3049815	T	frequency=1
SNP	39	566	NC_007779	3397813	G	frequency=1
DEL	40	858,904	NC_007779	3742936	1336	frequency=1
DEL	41	616	NC_007779	3750122	1	frequency=9.592476e-01
SNP	42	617	NC_007779	3750123	T	frequency=4.065609e-02
DEL	43	859,909	NC_007779	3750591	1199	frequency=1
SNP	44	654	NC_007779	3898657	G	frequency=1
DEL	45	860,911	NC_007779	3958123	34	frequency=1
SNP	46	691	NC_007779	4090749	T	frequency=1
SNP	47	701	NC_007779	4165991	C	frequency=1
DEL	48	861,914	NC_007779	4310363	1199	frequency=1
DEL	49	763,764	NC_007779	4371271	2	frequency=1
SNP	50	831	NC_007779	4546535	A	frequency=1
RA	51	.	NC_007779	301	1	.	T	bias_e_value=2259220	bias_p_value=0.486238	fisher_strand_p_value=1	frequency=1.428604e-02	genotype_quality=1318.6	ks_quality_p_value=0.178589	log10_base_likelihood=-17.5467	log10_qual_likelihood_position_model=5.0055	log10_strand_likelihood_position_model=0.452189	new_cov=1/3	polymorphism_quality=12.2	quality=12.2	quality_position_model=3.71893e-14	ref_cov=109/167	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=110/170
RA	52	.	NC_007779	302	0	T	.	bias_e_value=2134850	bias_p_value=0.459471	fisher_strand_p_value=1	frequency=1.059246e-02	genotype_quality=1114.5	ks_quality_p_value=0.163435	log10_base_likelihood=-8.02679	log10_qual_likelihood_position_model=1.78224	log10_strand_likelihood_position_model=0.359773	new_cov=1/2	polymorphism_quality=2.5	quality=2.5	quality_position_model=8.38865e-08	ref_cov=110/170	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=111/172
RA	53	.	NC_007779	5595	0	G	T	bias_e_value=759.018	bias_p_value=0.000163358	fisher_strand_p_value=1.3365e-05	frequency=4.972553e-02	genotype_quality=985.0	ks_quality_p_value=1	log10_base_likelihood=-11.6332	log10_qual_likelihood_position_model=16.7124	log10_strand_likelihood_position_model=5.00289	new_cov=1/20	polymorphism_quality=6.2	quality=6.2	quality_position_model=Inf	ref_cov=143/133	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=144/154
RA	54	.	NC_007779	9892	0	A	.	bias_e_value=3870350	bias_p_value=0.832991	fisher_strand_p_value=0.611919	frequency=1.066589e-02	genotype_quality=1124.8	ks_quality_p_value=0.785947	log10_base_likelihood=-7.80239	log10_qual_likelihood_position_model=1.96694	log10_strand_likelihood_position_model=0.439107	new_cov=1/2	polymorphism_quality=2.3	quality=2.3	quality_position_model=2.68978e-07	ref_cov=144/134	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=145/136
RA	55	.	NC_007779	15382	0	A	G	bias_e_value=0.00659645	bias_p_value=1.41971e-09	fisher_strand_p_value=5.77717e-11	frequency=8.511686e-02	genotype_quality=562.6	ks_quality_p_value=1	log10_base_likelihood=-9.67098	log10_qual_likelihood_position_model=17.9367	log10_strand_likelihood_position_model=10.2383	new_cov=20/0	polymorphism_quality=4.2	quality=4.2	quality_position_model=Inf	ref_cov=45/124	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=65/124
RA	56	.	NC_007779	17050	0	A	C	bias_e_value=2.7808e-09	bias_p_value=5.98494e-16	fisher_strand_p_value=1.50624e-17	frequency=1.168628e-01	genotype_quality=518.6	ks_quality_p_value=1	log10_base_likelihood=-19.7747	log10_qual_likelihood_position_model=24.5494	log10_strand_likelihood_position_model=16.8221	new_cov=0/26	polymorphism_quality=14.5	quality=14.5	quality_position_model=Inf	ref_cov=115/21	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=115/47
RA	57	.	NC_007779	29486	0	C	A	bias_e_value=528.521	bias_p_value=0.00011375	fisher_strand_p_value=9.01597e-06	frequency=3.516865e-02	genotype_quality=856.9	ks_quality_p_value=1	log10_base_likelihood=-6.72951	log10_qual_likelihood_position_model=11.5534	log10_strand_likelihood_position_model=5.04499	new_cov=0/10	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=148/62	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=148/72
RA	58	.	NC_007779	29496	0	T	A	bias_e_value=0.0981492	bias_p_value=2.1124e-08	fisher_strand_p_value=9.71104e-10	frequency=7.129812e-02	genotype_quality=860.0	ks_quality_p_value=1	log10_base_likelihood=-14.2338	log10_qual_likelihood_position_model=28.1468	log10_strand_likelihood_position_model=9.01273	new_cov=0/20	polymorphism_quality=8.9	quality=8.9	quality_position_model=Inf	ref_cov=159/77	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=159/97
RA	59	.	NC_007779	29503	0	T	C	bias_e_value=8.13166e-06	bias_p_value=1.75012e-12	fisher_strand_p_value=5.55207e-14	frequency=9.386778e-02	genotype_quality=803.2	ks_quality_p_value=1	log10_base_likelihood=-11.544	log10_qual_likelihood_position_model=23.5422	log10_strand_likelihood_position_model=13.2618	new_cov=1/36	polymorphism_quality=6.1	quality=6.1	quality_position_model=Inf	ref_cov=160/86	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=162/124
RA	60	.	NC_007779	34111	1	.	T	bias_e_value=435791	bias_p_value=0.0937925	fisher_strand_p_value=0.371477	frequency=1.824856e-02	genotype_quality=1295.1	ks_quality_p_value=0.0508007	log10_base_likelihood=-21.6574	log10_qual_likelihood_position_model=2.79692	log10_strand_likelihood_position_model=0.771752	new_cov=4/1	polymorphism_quality=16.4	quality=16.4	quality_position_model=3.05918e-20	ref_cov=137/132	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=141/133
RA	61	.	NC_007779	34112	0	T	.	bias_e_value=3672450	bias_p_value=0.790398	fisher_strand_p_value=0.623262	frequency=1.437855e-02	genotype_quality=1093.2	ks_quality_p_value=0.685168	log10_base_likelihood=-10.9289	log10_qual_likelihood_position_model=2.16216	log10_strand_likelihood_position_model=0.571615	new_cov=3/1	polymorphism_quality=5.5	quality=5.5	quality_position_model=3.51046e-10	ref_cov=141/133	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=144/134
RA	62	.	NC_007779	38106	0	C	G	bias_e_value=6.16786	bias_p_value=1.32747e-06	fisher_strand_p_value=7.81256e-08	frequency=4.984999e-02	genotype_quality=754.2	ks_quality_p_value=0.977195	log10_base_likelihood=-5.83657	log10_qual_likelihood_position_model=17.8397	log10_strand_likelihood_position_model=7.10721	new_cov=0/15	polymorphism_quality=0.3	quality=0.3	quality_position_model=Inf	ref_cov=144/65	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=144/80
RA	63	.	NC_007779	47305	0	G	T	bias_e_value=0.0343862	bias_p_value=7.40071e-09	fisher_strand_p_value=3.23873e-10	frequency=6.754351e-02	genotype_quality=1011.3	ks_quality_p_value=1	log10_base_likelihood=-12.7158	log10_qual_likelihood_position_model=25.7338	log10_strand_likelihood_position_model=9.52843	new_cov=0/31	polymorphism_quality=7.3	quality=7.3	quality_position_model=Inf	ref_cov=154/134	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=154/165
RA	64	.	NC_007779	48338	0	T	G	bias_e_value=0.0248025	bias_p_value=5.33809e-09	fisher_strand_p_value=2.34573e-10	frequency=7.346869e-02	genotype_quality=485.8	ks_quality_p_value=0.981216	log10_base_likelihood=-18.4808	log10_qual_likelihood_position_model=11.738	log10_strand_likelihood_position_model=9.62972	new_cov=10/0	polymorphism_quality=13.2	quality=13.2	quality_position_model=Inf	ref_cov=9/116	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=19/116
RA	65	.	NC_007779	49800	1	.	T	bias_e_value=4526570	bias_p_value=0.974225	fisher_strand_p_value=1	frequency=7.490158e-03	genotype_quality=1305.6	ks_quality_p_value=0.78172	log10_base_likelihood=-8.10101	log10_qual_likelihood_position_model=1.02909	log10_strand_likelihood_position_model=0.299894	new_cov=1/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=1.01804e-08	ref_cov=137/128	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=138/129
RA	66	.	NC_007779	56379	0	T	G	bias_e_value=2.15335e-07	bias_p_value=4.63452e-14	fisher_strand_p_value=1.31418e-15	frequency=7.161474e-02	genotype_quality=784.1	ks_quality_p_value=1	log10_base_likelihood=-7.72448	log10_qual_likelihood_position_model=32.5165	log10_strand_likelihood_position_model=14.8813	new_cov=32/0	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=64/153	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=96/153
RA	67	.	NC_007779	61542	0	C	G	bias_e_value=0.0463791	bias_p_value=9.98188e-09	fisher_strand_p_value=4.42897e-10	frequency=5.806732e-02	genotype_quality=727.8	ks_quality_p_value=1	log10_base_likelihood=-12.4324	log10_qual_likelihood_position_model=13.8421	log10_strand_likelihood_position_model=9.3537	new_cov=13/0	polymorphism_quality=7.0	quality=7.0	quality_position_model=Inf	ref_cov=30/156	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=43/156
RA	68	.	NC_007779	66457	0	C	A	frequency=1	genotype_quality=1223.0	new_cov=157/148	quality=1223.0	ref_cov=0/0	tot_cov=157/148
RA	69	.	NC_007779	70602	0	G	T	bias_e_value=0.0802346	bias_p_value=1.72684e-08	fisher_strand_p_value=7.8622e-10	frequency=5.991364e-02	genotype_quality=922.1	ks_quality_p_value=1	log10_base_likelihood=-9.51326	log10_qual_likelihood_position_model=22.286	log10_strand_likelihood_position_model=9.10446	new_cov=0/28	polymorphism_quality=4.1	quality=4.1	quality_position_model=Inf	ref_cov=145/116	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=145/147
RA	70	.	NC_007779	75074	0	T	G	bias_e_value=1.5725e-29	bias_p_value=3.38438e-36	fisher_strand_p_value=3.88378e-38	frequency=2.417040e-01	genotype_quality=613.1	ks_quality_p_value=1	log10_base_likelihood=-52.5331	log10_qual_likelihood_position_model=51.1839	log10_strand_likelihood_position_model=37.4107	new_cov=72/0	polymorphism_quality=47.5	quality=47.5	quality_position_model=Inf	ref_cov=30/143	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=102/143
RA	71	.	NC_007779	75079	0	C	T	bias_e_value=0.0520363	bias_p_value=1.11994e-08	fisher_strand_p_value=4.9959e-10	frequency=6.266928e-02	genotype_quality=700.9	ks_quality_p_value=1	log10_base_likelihood=-13.9973	log10_qual_likelihood_position_model=16.6468	log10_strand_likelihood_position_model=9.30139	new_cov=13/0	polymorphism_quality=8.6	quality=8.6	quality_position_model=Inf	ref_cov=29/150	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=42/150
RA	72	.	NC_007779	84005	1	.	T	bias_e_value=2885860	bias_p_value=0.621105	fisher_strand_p_value=0.542768	frequency=7.604599e-03	genotype_quality=1286.2	ks_quality_p_value=0.49406	log10_base_likelihood=-7.65138	log10_qual_likelihood_position_model=1.546	log10_strand_likelihood_position_model=0.357388	new_cov=1/1	polymorphism_quality=2.2	quality=2.2	quality_position_model=1.16216e-07	ref_cov=84/177	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=85/178
RA	73	.	NC_007779	89555	0	G	T	bias_e_value=14.0825	bias_p_value=3.03088e-06	fisher_strand_p_value=2.02365e-07	frequency=5.665827e-02	genotype_quality=859.8	ks_quality_p_value=0.907129	log10_base_likelihood=-10.8846	log10_qual_likelihood_position_model=22.9899	log10_strand_likelihood_position_model=6.69386	new_cov=18/0	polymorphism_quality=5.5	quality=5.5	quality_position_model=Inf	ref_cov=97/144	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=115/145
RA	74	.	NC_007779	97880	0	C	T	frequency=1	genotype_quality=1055.3	new_cov=139/123	quality=1055.3	ref_cov=0/0	tot_cov=139/124
RA	75	.	NC_007779	101246	0	T	G	bias_e_value=5006.41	bias_p_value=0.0010775	fisher_strand_p_value=0.000113532	frequency=3.424931e-02	genotype_quality=539.1	ks_quality_p_value=0.934987	log10_base_likelihood=-12.0392	log10_qual_likelihood_position_model=8.28018	log10_strand_likelihood_position_model=3.94488	new_cov=6/0	polymorphism_quality=6.6	quality=6.6	quality_position_model=Inf	ref_cov=29/115	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=35/115
RA	76	.	NC_007779	107544	1	.	T	bias_e_value=4031730	bias_p_value=0.867723	fisher_strand_p_value=0.643292	frequency=1.423454e-02	genotype_quality=1337.0	ks_quality_p_value=0.826928	log10_base_likelihood=-17.1626	log10_qual_likelihood_position_model=2.30262	log10_strand_likelihood_position_model=0.478721	new_cov=1/3	polymorphism_quality=11.8	quality=11.8	quality_position_model=1.74429e-16	ref_cov=116/161	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=117/164
RA	77	.	NC_007779	119384	0	T	G	bias_e_value=1.04734e-28	bias_p_value=2.25413e-35	fisher_strand_p_value=2.64497e-37	frequency=2.182589e-01	genotype_quality=657.2	ks_quality_p_value=1	log10_base_likelihood=-49.4936	log10_qual_likelihood_position_model=54.762	log10_strand_likelihood_position_model=36.5776	new_cov=70/0	polymorphism_quality=44.4	quality=44.4	quality_position_model=Inf	ref_cov=35/155	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=105/155
RA	78	.	NC_007779	119389	0	C	A	bias_e_value=1.73619e-06	bias_p_value=3.73669e-13	fisher_strand_p_value=1.12839e-14	frequency=9.671259e-02	genotype_quality=878.3	ks_quality_p_value=1	log10_base_likelihood=-19.9845	log10_qual_likelihood_position_model=23.5642	log10_strand_likelihood_position_model=13.9475	new_cov=33/0	polymorphism_quality=14.7	quality=14.7	quality_position_model=Inf	ref_cov=76/152	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=109/152
RA	79	.	NC_007779	136493	1	.	A	bias_e_value=2894430	bias_p_value=0.62295	fisher_strand_p_value=0.500792	frequency=7.193565e-03	genotype_quality=1356.3	ks_quality_p_value=0.538277	log10_base_likelihood=-7.7	log10_qual_likelihood_position_model=1.71043	log10_strand_likelihood_position_model=0.543077	new_cov=0/2	polymorphism_quality=2.2	quality=2.2	quality_position_model=2.38614e-07	ref_cov=129/147	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=129/149
RA	80	.	NC_007779	137009	0	G	T	bias_e_value=14.6011	bias_p_value=3.14249e-06	fisher_strand_p_value=2.17296e-07	frequency=4.948044e-02	genotype_quality=853.7	ks_quality_p_value=0.877953	log10_base_likelihood=-8.75784	log10_qual_likelihood_position_model=21.1625	log10_strand_likelihood_position_model=6.66295	new_cov=16/0	polymorphism_quality=3.3	quality=3.3	quality_position_model=Inf	ref_cov=88/155	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=104/155
RA	81	.	NC_007779	137026	0	A	G	bias_e_value=7.4615e-07	bias_p_value=1.60589e-13	fisher_strand_p_value=4.72517e-15	frequency=7.533026e-02	genotype_quality=822.2	ks_quality_p_value=1	log10_base_likelihood=-6.65908	log10_qual_likelihood_position_model=27.7982	log10_strand_likelihood_position_model=14.3256	new_cov=29/0	polymorphism_quality=1.1	quality=1.1	quality_position_model=Inf	ref_cov=63/164	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=93/164
RA	82	.	NC_007779	149550	1	.	T	bias_e_value=4643820	bias_p_value=0.999459	fisher_strand_p_value=1	frequency=6.493568e-03	genotype_quality=1497.0	ks_quality_p_value=0.967274	log10_base_likelihood=-7.7759	log10_qual_likelihood_position_model=2.75038	log10_strand_likelihood_position_model=0.32132	new_cov=1/1	polymorphism_quality=2.3	quality=2.3	quality_position_model=1.41099e-06	ref_cov=187/119	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=188/120
RA	83	.	NC_007779	151656	0	T	G	bias_e_value=3.64284e-08	bias_p_value=7.84025e-15	fisher_strand_p_value=2.11368e-16	frequency=1.043291e-01	genotype_quality=965.9	ks_quality_p_value=1	log10_base_likelihood=-23.8494	log10_qual_likelihood_position_model=37.9351	log10_strand_likelihood_position_model=15.675	new_cov=40/0	polymorphism_quality=18.6	quality=18.6	quality_position_model=Inf	ref_cov=97/171	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=140/171
RA	84	.	NC_007779	164574	0	T	G	bias_e_value=2.2252	bias_p_value=4.78915e-07	fisher_strand_p_value=2.59325e-08	frequency=8.224487e-02	genotype_quality=378.9	ks_quality_p_value=1	log10_base_likelihood=-15.9132	log10_qual_likelihood_position_model=10.8585	log10_strand_likelihood_position_model=7.59676	new_cov=2/13	polymorphism_quality=10.6	quality=10.6	quality_position_model=Inf	ref_cov=110/19	reject=FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=112/32
RA	85	.	NC_007779	164576	0	A	G	bias_e_value=1.76764e-05	bias_p_value=3.80437e-12	fisher_strand_p_value=1.23841e-13	frequency=1.012654e-01	genotype_quality=390.9	ks_quality_p_value=1	log10_base_likelihood=-13.3548	log10_qual_likelihood_position_model=17.3741	log10_strand_likelihood_position_model=12.9071	new_cov=0/17	polymorphism_quality=8.0	quality=8.0	quality_position_model=Inf	ref_cov=111/15	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=111/32
RA	86	.	NC_007779	167632	0	C	A	frequency=1	genotype_quality=1183.6	new_cov=144/153	quality=1183.6	ref_cov=0/0	tot_cov=144/153
RA	87	.	NC_007779	175694	0	T	G	bias_e_value=7.10833e-18	bias_p_value=1.52988e-24	fisher_strand_p_value=2.55278e-26	frequency=1.387897e-01	genotype_quality=780.7	ks_quality_p_value=1	log10_base_likelihood=-24.5253	log10_qual_likelihood_position_model=40.0354	log10_strand_likelihood_position_model=25.593	new_cov=66/0	polymorphism_quality=19.3	quality=19.3	quality_position_model=Inf	ref_cov=75/153	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=143/153
RA	88	.	NC_007779	193477	1	.	G	bias_e_value=2609860	bias_p_value=0.561704	fisher_strand_p_value=0.246725	frequency=8.733749e-03	genotype_quality=1116.7	ks_quality_p_value=0.914889	log10_base_likelihood=-8.21897	log10_qual_likelihood_position_model=1.30213	log10_strand_likelihood_position_model=0.607787	new_cov=2/0	polymorphism_quality=2.7	quality=2.7	quality_position_model=3.05652e-08	ref_cov=112/115	reject=POLYMORPHISM_STRAND	tot_cov=114/115
RA	89	.	NC_007779	193480	0	C	G	bias_e_value=6.77239e-11	bias_p_value=1.45758e-17	fisher_strand_p_value=3.34761e-19	frequency=2.028561e-01	genotype_quality=536.8	ks_quality_p_value=1	log10_base_likelihood=-57.5999	log10_qual_likelihood_position_model=28.2039	log10_strand_likelihood_position_model=18.4753	new_cov=41/0	polymorphism_quality=52.5	quality=52.5	quality_position_model=5.7543e-13	ref_cov=42/112	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=83/112
RA	90	.	NC_007779	193483	0	C	G	bias_e_value=0.0291818	bias_p_value=6.2806e-09	fisher_strand_p_value=2.72806e-10	frequency=8.001041e-02	genotype_quality=578.3	ks_quality_p_value=1	log10_base_likelihood=-7.4316	log10_qual_likelihood_position_model=17.825	log10_strand_likelihood_position_model=9.56415	new_cov=22/0	polymorphism_quality=1.9	quality=1.9	quality_position_model=Inf	ref_cov=54/112	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=76/112
RA	91	.	NC_007779	193489	0	G	T	bias_e_value=0.0464491	bias_p_value=9.99695e-09	fisher_strand_p_value=4.43597e-10	frequency=1.183710e-01	genotype_quality=712.9	ks_quality_p_value=1	log10_base_likelihood=-22.4812	log10_qual_likelihood_position_model=21.3294	log10_strand_likelihood_position_model=9.59265	new_cov=29/0	polymorphism_quality=17.2	quality=17.2	quality_position_model=Inf	ref_cov=81/109	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=110/109
RA	92	.	NC_007779	193496	0	A	T	bias_e_value=0.00804123	bias_p_value=1.73066e-09	fisher_strand_p_value=7.10218e-11	frequency=1.209283e-01	genotype_quality=723.3	ks_quality_p_value=1	log10_base_likelihood=-41.6498	log10_qual_likelihood_position_model=30.9596	log10_strand_likelihood_position_model=10.1486	new_cov=26/0	polymorphism_quality=36.5	quality=36.5	quality_position_model=0.0526992	ref_cov=68/118	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=94/118
RA	93	.	NC_007779	194839	1	.	T	bias_e_value=3680310	bias_p_value=0.79209	fisher_strand_p_value=0.601572	frequency=1.041698e-02	genotype_quality=1386.1	ks_quality_p_value=0.713187	log10_base_likelihood=-12.483	log10_qual_likelihood_position_model=1.86343	log10_strand_likelihood_position_model=0.454389	new_cov=2/1	polymorphism_quality=7.1	quality=7.1	quality_position_model=3.39265e-12	ref_cov=133/152	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=135/153
RA	94	.	NC_007779	199344	0	G	A	bias_e_value=4630580	bias_p_value=0.996611	fisher_strand_p_value=1	frequency=1.623058e-02	genotype_quality=1007.1	ks_quality_p_value=0.918805	log10_base_likelihood=-7.18823	log10_qual_likelihood_position_model=3.01773	log10_strand_likelihood_position_model=0.438437	new_cov=2/2	polymorphism_quality=1.7	quality=1.7	quality_position_model=1.47136e-05	ref_cov=104/137	reject=EVALUE	tot_cov=106/139
RA	95	.	NC_007779	204470	0	C	A	bias_e_value=26638.8	bias_p_value=0.00573329	fisher_strand_p_value=0.000694069	frequency=3.559589e-02	genotype_quality=823.4	ks_quality_p_value=0.998277	log10_base_likelihood=-7.47923	log10_qual_likelihood_position_model=16.1976	log10_strand_likelihood_position_model=3.1836	new_cov=1/11	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=134/96	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=135/107
RA	96	.	NC_007779	212548	0	T	G	bias_e_value=0.000353407	bias_p_value=7.60615e-11	fisher_strand_p_value=2.75406e-12	frequency=8.595085e-02	genotype_quality=727.3	ks_quality_p_value=1	log10_base_likelihood=-11.5874	log10_qual_likelihood_position_model=29.7972	log10_strand_likelihood_position_model=11.572	new_cov=31/2	polymorphism_quality=6.2	quality=6.2	quality_position_model=Inf	ref_cov=62/139	reject=FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=94/141
RA	97	.	NC_007779	233118	0	T	C	bias_e_value=6.51726e-05	bias_p_value=1.40267e-11	fisher_strand_p_value=4.77584e-13	frequency=8.527851e-02	genotype_quality=539.5	ks_quality_p_value=1	log10_base_likelihood=-17.4161	log10_qual_likelihood_position_model=17.641	log10_strand_likelihood_position_model=12.3209	new_cov=0/14	polymorphism_quality=12.1	quality=12.1	quality_position_model=Inf	ref_cov=132/13	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=132/27
RA	98	.	NC_007779	249538	0	T	G	bias_e_value=2.82351e-06	bias_p_value=6.07685e-13	fisher_strand_p_value=1.86327e-14	frequency=4.839611e-02	genotype_quality=783.0	ks_quality_p_value=1	log10_base_likelihood=-7.10587	log10_qual_likelihood_position_model=33.3514	log10_strand_likelihood_position_model=13.7297	new_cov=30/0	polymorphism_quality=1.6	quality=1.6	quality_position_model=Inf	ref_cov=67/153	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=97/153
RA	99	.	NC_007779	252970	0	A	C	bias_e_value=1.33742e-13	bias_p_value=2.87843e-20	fisher_strand_p_value=5.76788e-22	frequency=8.183575e-02	genotype_quality=821.7	ks_quality_p_value=1	log10_base_likelihood=-9.34369	log10_qual_likelihood_position_model=37.2474	log10_strand_likelihood_position_model=21.239	new_cov=0/59	polymorphism_quality=3.9	quality=3.9	quality_position_model=Inf	ref_cov=150/88	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=150/148
RA	100	.	NC_007779	265564	0	T	G	bias_e_value=3.69855e-09	bias_p_value=7.96015e-16	fisher_strand_p_value=2.01821e-17	frequency=8.506393e-02	genotype_quality=702.9	ks_quality_p_value=1	log10_base_likelihood=-11.7114	log10_qual_likelihood_position_model=29.973	log10_strand_likelihood_position_model=16.695	new_cov=40/0	polymorphism_quality=6.3	quality=6.3	quality_position_model=Inf	ref_cov=63/133	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=103/133
RA	101	.	NC_007779	265582	0	T	G	bias_e_value=0.00143198	bias_p_value=3.08197e-10	fisher_strand_p_value=1.17791e-11	frequency=7.257366e-02	genotype_quality=748.9	ks_quality_p_value=1	log10_base_likelihood=-7.53619	log10_qual_likelihood_position_model=27.9935	log10_strand_likelihood_position_model=10.9289	new_cov=28/0	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=78/134	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=108/134
RA	102	.	NC_007779	274547	0	A	G	frequency=1	genotype_quality=1336.9	new_cov=146/170	quality=1336.9	ref_cov=0/0	tot_cov=146/170
RA	103	.	NC_007779	290600	0	T	C	deleted=1	frequency=1	genotype_quality=1.0	new_cov=0/1	quality=1.0	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	104	.	NC_007779	290602	0	A	G	deleted=1	frequency=1	genotype_quality=1.2	new_cov=0/1	quality=1.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	105	.	NC_007779	290626	0	G	C	deleted=1	frequency=1	genotype_quality=1.2	new_cov=0/1	quality=1.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	106	.	NC_007779	297978	0	C	T	deleted=1	frequency=1	genotype_quality=3.9	new_cov=0/1	quality=3.9	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	107	.	NC_007779	365514	0	C	T	deleted=1	frequency=1	genotype_quality=31.3	new_cov=7/1	quality=31.3	ref_cov=0/0	tot_cov=7/1
RA	108	.	NC_007779	365524	0	G	.	deleted=1	frequency=1	genotype_quality=38.5	new_cov=7/1	quality=38.5	ref_cov=0/0	tot_cov=7/1
RA	109	.	NC_007779	374799	0	T	G	bias_e_value=8.80128e-12	bias_p_value=1.89424e-18	fisher_strand_p_value=4.15147e-20	frequency=6.777716e-02	genotype_quality=651.5	ks_quality_p_value=1	log10_base_likelihood=-9.14294	log10_qual_likelihood_position_model=24.4609	log10_strand_likelihood_position_model=19.3818	new_cov=24/0	polymorphism_quality=3.7	quality=3.7	quality_position_model=Inf	ref_cov=16/149	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=40/149
RA	110	.	NC_007779	379236	1	.	G	bias_e_value=2968100	bias_p_value=0.638806	fisher_strand_p_value=0.666743	frequency=2.415466e-02	genotype_quality=956.1	ks_quality_p_value=0.422758	log10_base_likelihood=-23.286	log10_qual_likelihood_position_model=3.50847	log10_strand_likelihood_position_model=0.480426	new_cov=4/1	polymorphism_quality=18.0	quality=18.0	quality_position_model=1.8344e-21	ref_cov=134/68	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=138/69
RA	111	.	NC_007779	379237	0	G	.	bias_e_value=1776620	bias_p_value=0.38237	fisher_strand_p_value=0.297628	frequency=3.912163e-02	genotype_quality=901.9	ks_quality_p_value=0.415862	log10_base_likelihood=-29.2854	log10_qual_likelihood_position_model=4.70499	log10_strand_likelihood_position_model=0.858734	new_cov=4/5	polymorphism_quality=24.1	quality=24.1	quality_position_model=6.23686e-26	ref_cov=140/80	reject=INDEL_HOMOPOLYMER	tot_cov=144/86
RA	112	.	NC_007779	387917	0	T	G	bias_e_value=545.887	bias_p_value=0.000117488	fisher_strand_p_value=9.33821e-06	frequency=5.789375e-02	genotype_quality=403.1	ks_quality_p_value=1	log10_base_likelihood=-8.7948	log10_qual_likelihood_position_model=14.0239	log10_strand_likelihood_position_model=5.04891	new_cov=3/9	polymorphism_quality=3.3	quality=3.3	quality_position_model=Inf	ref_cov=108/16	reject=FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=111/25
RA	113	.	NC_007779	387919	0	A	G	bias_e_value=0.103345	bias_p_value=2.22422e-08	fisher_strand_p_value=1.0453e-09	frequency=7.467890e-02	genotype_quality=404.5	ks_quality_p_value=0.980629	log10_base_likelihood=-17.5922	log10_qual_likelihood_position_model=9.08102	log10_strand_likelihood_position_model=8.98076	new_cov=0/10	polymorphism_quality=12.3	quality=12.3	quality_position_model=Inf	ref_cov=112/11	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=112/21
RA	114	.	NC_007779	407306	0	C	A	bias_e_value=118.837	bias_p_value=2.55766e-05	fisher_strand_p_value=1.79748e-06	frequency=5.614614e-02	genotype_quality=799.6	ks_quality_p_value=1	log10_base_likelihood=-12.8289	log10_qual_likelihood_position_model=15.0235	log10_strand_likelihood_position_model=5.74534	new_cov=18/0	polymorphism_quality=7.4	quality=7.4	quality_position_model=Inf	ref_cov=104/123	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=122/123
RA	115	.	NC_007779	416826	0	A	G	bias_e_value=0.0016845	bias_p_value=3.62544e-10	fisher_strand_p_value=1.39639e-11	frequency=9.580326e-02	genotype_quality=608.4	ks_quality_p_value=0.998738	log10_base_likelihood=-10.5777	log10_qual_likelihood_position_model=17.0427	log10_strand_likelihood_position_model=10.855	new_cov=22/0	polymorphism_quality=5.2	quality=5.2	quality_position_model=Inf	ref_cov=49/127	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=72/127
RA	116	.	NC_007779	429744	1	.	T	bias_e_value=4585100	bias_p_value=0.986821	fisher_strand_p_value=1	frequency=7.246017e-03	genotype_quality=1350.1	ks_quality_p_value=0.842105	log10_base_likelihood=-8.02109	log10_qual_likelihood_position_model=1.483	log10_strand_likelihood_position_model=0.299454	new_cov=1/1	polymorphism_quality=2.5	quality=2.5	quality_position_model=3.61355e-08	ref_cov=137/137	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=138/138
RA	117	.	NC_007779	432858	0	T	G	bias_e_value=4.41707e-14	bias_p_value=9.50656e-21	fisher_strand_p_value=1.86276e-22	frequency=1.356196e-01	genotype_quality=744.2	ks_quality_p_value=1	log10_base_likelihood=-20.6835	log10_qual_likelihood_position_model=38.3816	log10_strand_likelihood_position_model=21.9242	new_cov=61/0	polymorphism_quality=15.4	quality=15.4	quality_position_model=Inf	ref_cov=79/139	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=142/139
RA	118	.	NC_007779	440767	0	G	T	bias_e_value=13.811	bias_p_value=2.97245e-06	fisher_strand_p_value=1.92317e-07	frequency=6.383133e-02	genotype_quality=817.3	ks_quality_p_value=0.934949	log10_base_likelihood=-15.0364	log10_qual_likelihood_position_model=16.8812	log10_strand_likelihood_position_model=6.91571	new_cov=0/22	polymorphism_quality=9.7	quality=9.7	quality_position_model=Inf	ref_cov=132/113	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=132/137
RA	119	.	NC_007779	450484	0	G	T	bias_e_value=0.286011	bias_p_value=6.15564e-08	fisher_strand_p_value=3.35067e-09	frequency=8.619595e-02	genotype_quality=637.0	ks_quality_p_value=0.890515	log10_base_likelihood=-13.6574	log10_qual_likelihood_position_model=22.4433	log10_strand_likelihood_position_model=8.47487	new_cov=20/0	polymorphism_quality=8.3	quality=8.3	quality_position_model=Inf	ref_cov=60/116	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=80/116
RA	120	.	NC_007779	455713	1	.	T	bias_e_value=1887680	bias_p_value=0.406273	fisher_strand_p_value=0.231034	frequency=7.352829e-03	genotype_quality=1325.7	ks_quality_p_value=0.586359	log10_base_likelihood=-7.59079	log10_qual_likelihood_position_model=2.69728	log10_strand_likelihood_position_model=0.636324	new_cov=2/0	polymorphism_quality=2.1	quality=2.1	quality_position_model=4.13518e-06	ref_cov=129/141	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=131/141
RA	121	.	NC_007779	460529	0	T	.	bias_e_value=4642650	bias_p_value=0.999208	fisher_strand_p_value=1	frequency=1.062584e-02	genotype_quality=1123.8	ks_quality_p_value=0.960461	log10_base_likelihood=-7.58804	log10_qual_likelihood_position_model=2.81668	log10_strand_likelihood_position_model=0.406988	new_cov=2/1	polymorphism_quality=2.1	quality=2.1	quality_position_model=3.19417e-06	ref_cov=145/134	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=147/135
RA	122	.	NC_007779	465801	0	C	A	bias_e_value=4.01194e-06	bias_p_value=8.63465e-13	fisher_strand_p_value=2.76934e-14	frequency=1.191216e-01	genotype_quality=705.0	ks_quality_p_value=0.966765	log10_base_likelihood=-32.0514	log10_qual_likelihood_position_model=29.9501	log10_strand_likelihood_position_model=13.5576	new_cov=0/28	polymorphism_quality=26.9	quality=26.9	quality_position_model=Inf	ref_cov=137/53	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=137/82
RA	123	.	NC_007779	467040	1	.	A	bias_e_value=2475220	bias_p_value=0.532725	fisher_strand_p_value=0.234809	frequency=7.246017e-03	genotype_quality=1345.1	ks_quality_p_value=0.880737	log10_base_likelihood=-7.97398	log10_qual_likelihood_position_model=1.5269	log10_strand_likelihood_position_model=0.629285	new_cov=0/2	polymorphism_quality=2.5	quality=2.5	quality_position_model=9.84035e-08	ref_cov=142/132	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=142/134
RA	124	.	NC_007779	467487	1	.	T	bias_e_value=4251820	bias_p_value=0.915091	fisher_strand_p_value=1	frequency=6.409645e-03	genotype_quality=1509.6	ks_quality_p_value=0.617311	log10_base_likelihood=-7.86508	log10_qual_likelihood_position_model=1.1553	log10_strand_likelihood_position_model=0.318305	new_cov=1/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=2.51278e-08	ref_cov=123/187	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=124/188
RA	125	.	NC_007779	489148	1	.	C	bias_e_value=2083100	bias_p_value=0.448333	fisher_strand_p_value=0.189266	frequency=8.230209e-03	genotype_quality=1167.6	ks_quality_p_value=0.831362	log10_base_likelihood=-7.77702	log10_qual_likelihood_position_model=2.4472	log10_strand_likelihood_position_model=0.722926	new_cov=0/2	polymorphism_quality=2.3	quality=2.3	quality_position_model=1.78247e-06	ref_cov=137/104	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=137/106
RA	126	.	NC_007779	494823	0	T	G	bias_e_value=3.99879e-13	bias_p_value=8.60634e-20	fisher_strand_p_value=1.76408e-21	frequency=9.650469e-02	genotype_quality=721.0	ks_quality_p_value=1	log10_base_likelihood=-7.81167	log10_qual_likelihood_position_model=39.8034	log10_strand_likelihood_position_model=20.7535	new_cov=35/0	polymorphism_quality=2.3	quality=2.3	quality_position_model=Inf	ref_cov=34/148	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=69/148
RA	127	.	NC_007779	495174	0	G	T	bias_e_value=255890	bias_p_value=0.0550736	fisher_strand_p_value=0.0097881	frequency=1.935959e-02	genotype_quality=980.4	ks_quality_p_value=1	log10_base_likelihood=-5.89776	log10_qual_likelihood_position_model=9.58742	log10_strand_likelihood_position_model=2.0723	new_cov=0/8	polymorphism_quality=0.3	quality=0.3	quality_position_model=Inf	ref_cov=126/150	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=126/158
RA	128	.	NC_007779	498451	0	G	T	bias_e_value=818895	bias_p_value=0.176245	fisher_strand_p_value=0.25817	frequency=1.020336e-02	genotype_quality=1213.9	ks_quality_p_value=0.164031	log10_base_likelihood=-5.99581	log10_qual_likelihood_position_model=3.06314	log10_strand_likelihood_position_model=0.759597	new_cov=0/3	polymorphism_quality=0.4	quality=0.4	quality_position_model=0.000677658	ref_cov=129/161	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=129/164
RA	129	.	NC_007779	500788	0	A	C	bias_e_value=7.43628e-09	bias_p_value=1.60046e-15	fisher_strand_p_value=4.13289e-17	frequency=5.243397e-02	genotype_quality=835.8	ks_quality_p_value=1	log10_base_likelihood=-8.67415	log10_qual_likelihood_position_model=32.3749	log10_strand_likelihood_position_model=16.3837	new_cov=0/31	polymorphism_quality=3.2	quality=3.2	quality_position_model=Inf	ref_cov=167/55	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=167/86
RA	130	.	NC_007779	500799	0	A	C	bias_e_value=3.29906e-13	bias_p_value=7.10036e-20	fisher_strand_p_value=1.44955e-21	frequency=6.782627e-02	genotype_quality=749.0	ks_quality_p_value=1	log10_base_likelihood=-8.01283	log10_qual_likelihood_position_model=37.754	log10_strand_likelihood_position_model=20.8388	new_cov=0/36	polymorphism_quality=2.5	quality=2.5	quality_position_model=Inf	ref_cov=160/40	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=160/76
RA	131	.	NC_007779	500804	0	A	C	bias_e_value=9.26786e-14	bias_p_value=1.99466e-20	fisher_strand_p_value=3.9672e-22	frequency=7.159138e-02	genotype_quality=762.2	ks_quality_p_value=1	log10_base_likelihood=-9.06812	log10_qual_likelihood_position_model=31.5895	log10_strand_likelihood_position_model=21.4015	new_cov=0/36	polymorphism_quality=3.6	quality=3.6	quality_position_model=Inf	ref_cov=162/38	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=162/74
RA	132	.	NC_007779	503058	0	T	C	bias_e_value=3.84637e-07	bias_p_value=8.2783e-14	fisher_strand_p_value=2.38785e-15	frequency=1.493936e-01	genotype_quality=634.6	ks_quality_p_value=1	log10_base_likelihood=-26.2601	log10_qual_likelihood_position_model=35.3102	log10_strand_likelihood_position_model=14.622	new_cov=0/38	polymorphism_quality=21.0	quality=21.0	quality_position_model=Inf	ref_cov=119/65	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=119/103
RA	133	.	NC_007779	506363	1	.	A	bias_e_value=1601460	bias_p_value=0.344672	fisher_strand_p_value=0.192177	frequency=8.064270e-03	genotype_quality=1210.3	ks_quality_p_value=0.553372	log10_base_likelihood=-8.02232	log10_qual_likelihood_position_model=1.14291	log10_strand_likelihood_position_model=0.716298	new_cov=0/2	polymorphism_quality=2.5	quality=2.5	quality_position_model=4.32458e-08	ref_cov=139/107	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=139/109
RA	134	.	NC_007779	513848	0	A	C	bias_e_value=1.45313e-14	bias_p_value=3.12748e-21	fisher_strand_p_value=5.99496e-23	frequency=1.536431e-01	genotype_quality=515.6	ks_quality_p_value=1	log10_base_likelihood=-18.5947	log10_qual_likelihood_position_model=29.8808	log10_strand_likelihood_position_model=22.2222	new_cov=0/37	polymorphism_quality=13.3	quality=13.3	quality_position_model=Inf	ref_cov=117/22	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=117/59
RA	135	.	NC_007779	522430	1	.	T	bias_e_value=4560970	bias_p_value=0.981627	fisher_strand_p_value=1	frequency=2.714920e-02	genotype_quality=1029.4	ks_quality_p_value=0.814537	log10_base_likelihood=-27.1047	log10_qual_likelihood_position_model=3.26626	log10_strand_likelihood_position_model=0.499431	new_cov=3/3	polymorphism_quality=21.9	quality=21.9	quality_position_model=1.5174e-25	ref_cov=109/106	reject=INDEL_HOMOPOLYMER	tot_cov=112/109
RA	136	.	NC_007779	522431	0	T	.	bias_e_value=4399640	bias_p_value=0.946905	fisher_strand_p_value=1	frequency=1.356220e-02	genotype_quality=886.8	ks_quality_p_value=0.692359	log10_base_likelihood=-7.82281	log10_qual_likelihood_position_model=2.69136	log10_strand_likelihood_position_model=0.41817	new_cov=2/1	polymorphism_quality=2.3	quality=2.3	quality_position_model=1.38056e-06	ref_cov=110/108	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=112/109
RA	137	.	NC_007779	524490	0	T	G	bias_e_value=3.23277e-13	bias_p_value=6.95769e-20	fisher_strand_p_value=1.41983e-21	frequency=1.145658e-01	genotype_quality=806.3	ks_quality_p_value=1	log10_base_likelihood=-24.6998	log10_qual_likelihood_position_model=32.6199	log10_strand_likelihood_position_model=20.8478	new_cov=34/0	polymorphism_quality=19.5	quality=19.5	quality_position_model=Inf	ref_cov=39/172	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=73/172
RA	138	.	NC_007779	527270	0	A	C	bias_e_value=0.00015	bias_p_value=3.22836e-11	fisher_strand_p_value=1.1325e-12	frequency=7.808447e-02	genotype_quality=723.6	ks_quality_p_value=1	log10_base_likelihood=-9.99149	log10_qual_likelihood_position_model=22.9459	log10_strand_likelihood_position_model=11.946	new_cov=0/24	polymorphism_quality=4.6	quality=4.6	quality_position_model=Inf	ref_cov=146/56	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=147/80
RA	139	.	NC_007779	535125	0	T	G	bias_e_value=1.2871e-08	bias_p_value=2.77013e-15	fisher_strand_p_value=7.25893e-17	frequency=1.147227e-01	genotype_quality=646.9	ks_quality_p_value=1	log10_base_likelihood=-14.0947	log10_qual_likelihood_position_model=31.7153	log10_strand_likelihood_position_model=16.4414	new_cov=51/0	polymorphism_quality=8.7	quality=8.7	quality_position_model=Inf	ref_cov=80/115	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=133/115
RA	140	.	NC_007779	535142	0	A	G	bias_e_value=1.52578	bias_p_value=3.28383e-07	fisher_strand_p_value=1.74057e-08	frequency=6.427002e-02	genotype_quality=681.7	ks_quality_p_value=1	log10_base_likelihood=-6.76335	log10_qual_likelihood_position_model=15.1136	log10_strand_likelihood_position_model=7.75931	new_cov=20/0	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=75/123	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=95/123
RA	141	.	NC_007779	547694	0	A	G	frequency=1	genotype_quality=1196.0	new_cov=165/124	quality=1196.0	ref_cov=0/0	tot_cov=165/124
RA	142	.	NC_007779	547831	1	.	G	frequency=1	genotype_quality=1003.5	new_cov=102/131	quality=1003.5	ref_cov=1/0	tot_cov=103/132
RA	143	.	NC_007779	555612	0	A	.	bias_e_value=907624	bias_p_value=0.195342	fisher_strand_p_value=1	frequency=1.023102e-02	genotype_quality=1176.2	ks_quality_p_value=0.0485237	log10_base_likelihood=-7.97686	log10_qual_likelihood_position_model=2.67743	log10_strand_likelihood_position_model=0.372405	new_cov=1/2	polymorphism_quality=2.5	quality=2.5	quality_position_model=8.26788e-07	ref_cov=123/167	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=124/169
RA	144	.	NC_007779	556858	0	A	T	frequency=1	genotype_quality=979.6	new_cov=128/115	quality=979.6	ref_cov=0/0	tot_cov=128/115
RA	145	.	NC_007779	561188	1	.	A	bias_e_value=1707730	bias_p_value=0.367543	fisher_strand_p_value=0.498285	frequency=7.546425e-03	genotype_quality=1296.6	ks_quality_p_value=0.234347	log10_base_likelihood=-7.73752	log10_qual_likelihood_position_model=1.69012	log10_strand_likelihood_position_model=0.587411	new_cov=0/2	polymorphism_quality=2.2	quality=2.2	quality_position_model=2.31046e-07	ref_cov=130/133	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=130/135
RA	146	.	NC_007779	569996	0	G	C	frequency=1	genotype_quality=1233.0	new_cov=122/162	quality=1233.0	ref_cov=0/0	tot_cov=122/162
RA	147	.	NC_007779	583702	1	.	T	bias_e_value=4137390	bias_p_value=0.890464	fisher_strand_p_value=0.582115	frequency=1.351357e-02	genotype_quality=1076.4	ks_quality_p_value=0.97936	log10_base_likelihood=-12.6143	log10_qual_likelihood_position_model=1.9072	log10_strand_likelihood_position_model=0.490094	new_cov=1/2	polymorphism_quality=7.2	quality=7.2	quality_position_model=3.00364e-12	ref_cov=124/95	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=125/97
RA	148	.	NC_007779	589153	0	A	G	bias_e_value=0.0232234	bias_p_value=4.99822e-09	fisher_strand_p_value=2.14876e-10	frequency=7.735014e-02	genotype_quality=606.6	ks_quality_p_value=1	log10_base_likelihood=-8.65377	log10_qual_likelihood_position_model=15.9734	log10_strand_likelihood_position_model=9.66781	new_cov=20/0	polymorphism_quality=3.2	quality=3.2	quality_position_model=Inf	ref_cov=52/127	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=72/127
RA	149	.	NC_007779	589157	0	T	G	bias_e_value=1.93942e-11	bias_p_value=4.1741e-18	fisher_strand_p_value=9.31296e-20	frequency=8.799601e-02	genotype_quality=584.5	ks_quality_p_value=1	log10_base_likelihood=-6.18986	log10_qual_likelihood_position_model=32.9112	log10_strand_likelihood_position_model=19.0309	new_cov=33/0	polymorphism_quality=0.6	quality=0.6	quality_position_model=Inf	ref_cov=29/124	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=63/124
RA	150	.	NC_007779	593216	0	T	G	bias_e_value=5.55967e-12	bias_p_value=1.19657e-18	fisher_strand_p_value=2.59572e-20	frequency=6.987286e-02	genotype_quality=602.3	ks_quality_p_value=1	log10_base_likelihood=-6.89188	log10_qual_likelihood_position_model=25.3611	log10_strand_likelihood_position_model=19.5857	new_cov=21/0	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=9/143	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=31/143
RA	151	.	NC_007779	595481	0	T	G	bias_e_value=4.25471e-06	bias_p_value=9.15713e-13	fisher_strand_p_value=2.84465e-14	frequency=7.149601e-02	genotype_quality=773.5	ks_quality_p_value=1	log10_base_likelihood=-10.9933	log10_qual_likelihood_position_model=27.7906	log10_strand_likelihood_position_model=13.5775	new_cov=46/0	polymorphism_quality=5.6	quality=5.6	quality_position_model=Inf	ref_cov=107/126	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=153/126
RA	152	.	NC_007779	596507	0	A	.	bias_e_value=2121800	bias_p_value=0.456661	fisher_strand_p_value=0.610616	frequency=1.070499e-02	genotype_quality=1131.8	ks_quality_p_value=0.265122	log10_base_likelihood=-7.8575	log10_qual_likelihood_position_model=2.16825	log10_strand_likelihood_position_model=0.440879	new_cov=2/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=3.831e-07	ref_cov=133/144	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=135/145
RA	153	.	NC_007779	598799	0	T	G	bias_e_value=2.51721e-11	bias_p_value=5.41764e-18	fisher_strand_p_value=1.21598e-19	frequency=1.253867e-01	genotype_quality=561.5	ks_quality_p_value=1	log10_base_likelihood=-24.4367	log10_qual_likelihood_position_model=27.8311	log10_strand_likelihood_position_model=18.9151	new_cov=27/0	polymorphism_quality=19.2	quality=19.2	quality_position_model=Inf	ref_cov=19/128	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=46/128
RA	154	.	NC_007779	606687	1	.	T	bias_e_value=3964680	bias_p_value=0.853292	fisher_strand_p_value=0.622154	frequency=1.132107e-02	genotype_quality=1279.6	ks_quality_p_value=0.819462	log10_base_likelihood=-12.5761	log10_qual_likelihood_position_model=1.64762	log10_strand_likelihood_position_model=0.425987	new_cov=2/1	polymorphism_quality=7.2	quality=7.2	quality_position_model=1.53604e-12	ref_cov=130/132	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=132/133
RA	155	.	NC_007779	606688	0	T	.	bias_e_value=4011240	bias_p_value=0.863314	fisher_strand_p_value=1	frequency=1.122570e-02	genotype_quality=1052.6	ks_quality_p_value=0.52504	log10_base_likelihood=-7.85764	log10_qual_likelihood_position_model=2.15308	log10_strand_likelihood_position_model=0.422709	new_cov=2/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=3.53627e-07	ref_cov=132/132	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=134/133
RA	156	.	NC_007779	606911	1	.	G	bias_e_value=395392	bias_p_value=0.0850977	fisher_strand_p_value=0.163787	frequency=8.546829e-03	genotype_quality=1153.6	ks_quality_p_value=0.102045	log10_base_likelihood=-8.41849	log10_qual_likelihood_position_model=1.21727	log10_strand_likelihood_position_model=0.78572	new_cov=2/0	polymorphism_quality=2.9	quality=2.9	quality_position_model=2.37334e-08	ref_cov=93/139	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=95/139
RA	157	.	NC_007779	606915	0	T	G	bias_e_value=0.994666	bias_p_value=2.14076e-07	fisher_strand_p_value=1.10817e-08	frequency=3.712940e-02	genotype_quality=619.7	ks_quality_p_value=1	log10_base_likelihood=-12.4074	log10_qual_likelihood_position_model=8.14069	log10_strand_likelihood_position_model=7.95539	new_cov=7/0	polymorphism_quality=7.0	quality=7.0	quality_position_model=Inf	ref_cov=8/150	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=15/150
RA	158	.	NC_007779	612991	0	C	G	bias_e_value=4.51987e-06	bias_p_value=9.72782e-13	fisher_strand_p_value=3.03097e-14	frequency=8.237648e-02	genotype_quality=679.3	ks_quality_p_value=0.998953	log10_base_likelihood=-22.5277	log10_qual_likelihood_position_model=19.9042	log10_strand_likelihood_position_model=13.5184	new_cov=0/16	polymorphism_quality=17.3	quality=17.3	quality_position_model=Inf	ref_cov=150/17	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=150/33
RA	159	.	NC_007779	616029	0	C	A	bias_e_value=0.0284834	bias_p_value=6.13031e-09	fisher_strand_p_value=2.66847e-10	frequency=6.505871e-02	genotype_quality=722.3	ks_quality_p_value=0.996768	log10_base_likelihood=-15.5428	log10_qual_likelihood_position_model=18.1052	log10_strand_likelihood_position_model=9.57374	new_cov=0/16	polymorphism_quality=10.2	quality=10.2	quality_position_model=Inf	ref_cov=149/42	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=149/58
RA	160	.	NC_007779	617588	1	.	G	bias_e_value=2002710	bias_p_value=0.43103	fisher_strand_p_value=0.148141	frequency=1.246071e-02	genotype_quality=1565.1	ks_quality_p_value=1	log10_base_likelihood=-15.8293	log10_qual_likelihood_position_model=5.03734	log10_strand_likelihood_position_model=0.916658	new_cov=4/0	polymorphism_quality=10.5	quality=10.5	quality_position_model=6.70583e-12	ref_cov=186/131	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=190/131
RA	161	.	NC_007779	623841	1	.	G	bias_e_value=872079	bias_p_value=0.187692	fisher_strand_p_value=1	frequency=1.219463e-02	genotype_quality=801.8	ks_quality_p_value=0.0460171	log10_base_likelihood=-8.72883	log10_qual_likelihood_position_model=1.80378	log10_strand_likelihood_position_model=0.0215143	new_cov=2/0	polymorphism_quality=3.3	quality=3.3	quality_position_model=7.45262e-09	ref_cov=158/4	reject=POLYMORPHISM_STRAND	tot_cov=160/4
RA	162	.	NC_007779	645484	0	A	C	bias_e_value=2.73869e-07	bias_p_value=5.8943e-14	fisher_strand_p_value=1.68322e-15	frequency=7.368135e-02	genotype_quality=985.3	ks_quality_p_value=1	log10_base_likelihood=-12.8399	log10_qual_likelihood_position_model=32.8223	log10_strand_likelihood_position_model=14.7739	new_cov=0/34	polymorphism_quality=7.5	quality=7.5	quality_position_model=Inf	ref_cov=189/93	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=189/130
RA	163	.	NC_007779	645964	1	.	G	bias_e_value=2201710	bias_p_value=0.47386	fisher_strand_p_value=0.177646	frequency=1.098919e-02	genotype_quality=891.0	ks_quality_p_value=0.965328	log10_base_likelihood=-8.41948	log10_qual_likelihood_position_model=1.19969	log10_strand_likelihood_position_model=0.750446	new_cov=2/0	polymorphism_quality=2.9	quality=2.9	quality_position_model=2.08836e-08	ref_cov=75/105	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=77/105
RA	164	.	NC_007779	645970	0	T	G	bias_e_value=2.13166e-09	bias_p_value=4.58783e-16	fisher_strand_p_value=1.14676e-17	frequency=1.320505e-01	genotype_quality=494.3	ks_quality_p_value=1	log10_base_likelihood=-25.4259	log10_qual_likelihood_position_model=23.5593	log10_strand_likelihood_position_model=16.9405	new_cov=24/0	polymorphism_quality=20.2	quality=20.2	quality_position_model=Inf	ref_cov=16/112	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=41/112
RA	165	.	NC_007779	646433	0	A	C	bias_e_value=0.610054	bias_p_value=1.31298e-07	fisher_strand_p_value=6.62012e-09	frequency=3.233433e-02	genotype_quality=815.9	ks_quality_p_value=1	log10_base_likelihood=-10.1801	log10_qual_likelihood_position_model=11.8873	log10_strand_likelihood_position_model=8.17913	new_cov=0/8	polymorphism_quality=4.7	quality=4.7	quality_position_model=Inf	ref_cov=194/16	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=194/24
RA	166	.	NC_007779	646440	0	C	A	bias_e_value=2.19023e-14	bias_p_value=4.71388e-21	fisher_strand_p_value=9.17764e-23	frequency=8.920431e-02	genotype_quality=886.1	ks_quality_p_value=0.992512	log10_base_likelihood=-56.1195	log10_qual_likelihood_position_model=17.9845	log10_strand_likelihood_position_model=22.0373	new_cov=0/21	polymorphism_quality=51.1	quality=51.1	quality_position_model=3.17218e-18	ref_cov=204/10	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=204/31
RA	167	.	NC_007779	649677	0	T	G	bias_e_value=1.74182e-12	bias_p_value=3.74881e-19	fisher_strand_p_value=7.92831e-21	frequency=6.920338e-02	genotype_quality=729.7	ks_quality_p_value=1	log10_base_likelihood=-5.85426	log10_qual_likelihood_position_model=28.2398	log10_strand_likelihood_position_model=20.1008	new_cov=33/0	polymorphism_quality=0.3	quality=0.3	quality_position_model=Inf	ref_cov=35/156	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=68/156
RA	168	.	NC_007779	657964	0	T	.	bias_e_value=2558350	bias_p_value=0.550617	fisher_strand_p_value=0.636248	frequency=1.548195e-02	genotype_quality=941.1	ks_quality_p_value=0.343198	log10_base_likelihood=-9.86753	log10_qual_likelihood_position_model=4.4789	log10_strand_likelihood_position_model=0.497376	new_cov=1/3	polymorphism_quality=4.4	quality=4.4	quality_position_model=9.00806e-07	ref_cov=109/142	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=112/146
RA	169	.	NC_007779	660356	0	T	G	bias_e_value=2.02307e-22	bias_p_value=4.35412e-29	fisher_strand_p_value=6.17077e-31	frequency=1.324973e-01	genotype_quality=689.4	ks_quality_p_value=1	log10_base_likelihood=-23.6836	log10_qual_likelihood_position_model=37.5463	log10_strand_likelihood_position_model=30.2097	new_cov=50/0	polymorphism_quality=18.4	quality=18.4	quality_position_model=Inf	ref_cov=29/157	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=80/157
RA	170	.	NC_007779	665062	0	C	A	bias_e_value=0.00982324	bias_p_value=2.11419e-09	fisher_strand_p_value=8.86828e-11	frequency=1.185660e-01	genotype_quality=638.8	ks_quality_p_value=0.986783	log10_base_likelihood=-25.6444	log10_qual_likelihood_position_model=26.2153	log10_strand_likelihood_position_model=10.0595	new_cov=1/25	polymorphism_quality=20.4	quality=20.4	quality_position_model=Inf	ref_cov=121/54	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=122/79
RA	171	.	NC_007779	670797	0	G	T	bias_e_value=973.638	bias_p_value=0.00020955	fisher_strand_p_value=1.76474e-05	frequency=2.672100e-02	genotype_quality=1068.3	ks_quality_p_value=0.993546	log10_base_likelihood=-7.4626	log10_qual_likelihood_position_model=16.5265	log10_strand_likelihood_position_model=4.75332	new_cov=11/0	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=102/184	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=113/184
RA	172	.	NC_007779	686495	0	A	C	bias_e_value=2.98222e-10	bias_p_value=6.41844e-17	fisher_strand_p_value=1.52737e-18	frequency=1.067948e-01	genotype_quality=641.9	ks_quality_p_value=1	log10_base_likelihood=-23.7761	log10_qual_likelihood_position_model=27.3806	log10_strand_likelihood_position_model=17.8161	new_cov=0/24	polymorphism_quality=18.5	quality=18.5	quality_position_model=Inf	ref_cov=143/20	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=143/44
RA	173	.	NC_007779	687133	0	A	C	bias_e_value=0.00489484	bias_p_value=1.05348e-09	fisher_strand_p_value=4.23333e-11	frequency=5.304909e-02	genotype_quality=860.8	ks_quality_p_value=1	log10_base_likelihood=-9.7915	log10_qual_likelihood_position_model=29.1043	log10_strand_likelihood_position_model=10.3733	new_cov=0/24	polymorphism_quality=4.4	quality=4.4	quality_position_model=Inf	ref_cov=152/77	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=152/101
RA	174	.	NC_007779	704668	0	T	G	bias_e_value=1.9278e-11	bias_p_value=4.14908e-18	fisher_strand_p_value=9.25587e-20	frequency=6.665707e-02	genotype_quality=631.4	ks_quality_p_value=1	log10_base_likelihood=-5.95481	log10_qual_likelihood_position_model=27.4039	log10_strand_likelihood_position_model=19.0336	new_cov=25/0	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=19/148	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=44/148
RA	175	.	NC_007779	710864	0	T	G	bias_e_value=2297.53	bias_p_value=0.000494483	fisher_strand_p_value=4.50131e-05	frequency=2.221298e-02	genotype_quality=685.6	ks_quality_p_value=0.997678	log10_base_likelihood=-7.11881	log10_qual_likelihood_position_model=4.55674	log10_strand_likelihood_position_model=4.34666	new_cov=4/0	polymorphism_quality=1.6	quality=1.6	quality_position_model=Inf	ref_cov=12/162	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=16/162
RA	176	.	NC_007779	723942	1	.	T	bias_e_value=3627510	bias_p_value=0.780726	fisher_strand_p_value=1	frequency=8.402824e-03	genotype_quality=1132.2	ks_quality_p_value=0.415846	log10_base_likelihood=-8.04836	log10_qual_likelihood_position_model=1.5582	log10_strand_likelihood_position_model=0.302928	new_cov=1/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=4.08348e-08	ref_cov=129/107	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=130/108
RA	177	.	NC_007779	727929	1	.	T	bias_e_value=4037460	bias_p_value=0.868955	fisher_strand_p_value=1	frequency=7.812500e-03	genotype_quality=1240.4	ks_quality_p_value=0.533913	log10_base_likelihood=-8.0953	log10_qual_likelihood_position_model=1.36638	log10_strand_likelihood_position_model=0.299755	new_cov=1/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=2.29755e-08	ref_cov=131/123	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=132/124
RA	178	.	NC_007779	749354	0	C	A	frequency=1	genotype_quality=1166.9	new_cov=148/142	quality=1166.9	ref_cov=0/0	tot_cov=148/142
RA	179	.	NC_007779	752693	0	A	C	bias_e_value=1.44425e-20	bias_p_value=3.10837e-27	fisher_strand_p_value=4.69338e-29	frequency=1.817679e-01	genotype_quality=765.2	ks_quality_p_value=1	log10_base_likelihood=-50.9736	log10_qual_likelihood_position_model=46.541	log10_strand_likelihood_position_model=28.3285	new_cov=0/62	polymorphism_quality=45.9	quality=45.9	quality_position_model=Inf	ref_cov=166/60	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=166/122
RA	180	.	NC_007779	753547	0	T	A	bias_e_value=5.2489e-07	bias_p_value=1.12969e-13	fisher_strand_p_value=3.28893e-15	frequency=1.327958e-01	genotype_quality=740.5	ks_quality_p_value=1	log10_base_likelihood=-31.901	log10_qual_likelihood_position_model=36.9821	log10_strand_likelihood_position_model=14.4829	new_cov=0/32	polymorphism_quality=26.7	quality=26.7	quality_position_model=Inf	ref_cov=139/60	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=139/92
RA	181	.	NC_007779	758440	0	C	A	frequency=1	genotype_quality=1139.2	new_cov=133/149	quality=1139.2	ref_cov=0/0	tot_cov=133/149
RA	182	.	NC_007779	759019	0	C	G	bias_e_value=5.19415e-18	bias_p_value=1.1179e-24	fisher_strand_p_value=1.85846e-26	frequency=1.368971e-01	genotype_quality=706.9	ks_quality_p_value=0.998389	log10_base_likelihood=-69.0395	log10_qual_likelihood_position_model=26.5251	log10_strand_likelihood_position_model=25.7308	new_cov=0/27	polymorphism_quality=64.0	quality=64.0	quality_position_model=6.40681e-19	ref_cov=162/8	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=162/35
RA	183	.	NC_007779	771319	0	T	G	bias_e_value=22.8203	bias_p_value=4.91146e-06	fisher_strand_p_value=3.07038e-07	frequency=5.343866e-02	genotype_quality=581.7	ks_quality_p_value=1	log10_base_likelihood=-5.58367	log10_qual_likelihood_position_model=22.2972	log10_strand_likelihood_position_model=6.5514	new_cov=27/0	polymorphism_quality=0.0	quality=0.0	quality_position_model=Inf	ref_cov=96/82	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=124/82
RA	184	.	NC_007779	817515	0	G	T	bias_e_value=2617.39	bias_p_value=0.000563323	fisher_strand_p_value=5.18359e-05	frequency=3.747559e-02	genotype_quality=888.9	ks_quality_p_value=1	log10_base_likelihood=-7.97105	log10_qual_likelihood_position_model=13.823	log10_strand_likelihood_position_model=4.36937	new_cov=0/15	polymorphism_quality=2.5	quality=2.5	quality_position_model=Inf	ref_cov=127/125	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=127/142
RA	185	.	NC_007779	824398	0	A	C	bias_e_value=7.00877e-11	bias_p_value=1.50845e-17	fisher_strand_p_value=3.46725e-19	frequency=1.347499e-01	genotype_quality=706.5	ks_quality_p_value=1	log10_base_likelihood=-25.249	log10_qual_likelihood_position_model=41.4694	log10_strand_likelihood_position_model=18.4642	new_cov=1/51	polymorphism_quality=20.0	quality=20.0	quality_position_model=Inf	ref_cov=136/69	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=137/121
RA	186	.	NC_007779	827921	0	T	G	bias_e_value=2.91596e-15	bias_p_value=6.27582e-22	fisher_strand_p_value=1.16639e-23	frequency=1.214771e-01	genotype_quality=680.6	ks_quality_p_value=1	log10_base_likelihood=-17.1505	log10_qual_likelihood_position_model=37.9553	log10_strand_likelihood_position_model=22.9332	new_cov=50/0	polymorphism_quality=11.8	quality=11.8	quality_position_model=Inf	ref_cov=50/138	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=100/138
RA	187	.	NC_007779	829585	0	G	T	bias_e_value=0.189264	bias_p_value=4.0734e-08	fisher_strand_p_value=1.9488e-09	frequency=7.153606e-02	genotype_quality=677.2	ks_quality_p_value=0.992326	log10_base_likelihood=-26.8527	log10_qual_likelihood_position_model=16.4448	log10_strand_likelihood_position_model=8.71023	new_cov=14/0	polymorphism_quality=21.6	quality=21.6	quality_position_model=0.00225243	ref_cov=36/138	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=50/138
RA	188	.	NC_007779	837856	1	.	A	bias_e_value=4544360	bias_p_value=0.978053	fisher_strand_p_value=1	frequency=7.633209e-03	genotype_quality=1281.0	ks_quality_p_value=0.797942	log10_base_likelihood=-8.06426	log10_qual_likelihood_position_model=2.1074	log10_strand_likelihood_position_model=0.300002	new_cov=1/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=1.44426e-07	ref_cov=125/135	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=126/136
RA	189	.	NC_007779	847616	0	T	C	bias_e_value=244.488	bias_p_value=5.26195e-05	fisher_strand_p_value=3.91179e-06	frequency=5.301237e-02	genotype_quality=716.0	ks_quality_p_value=1	log10_base_likelihood=-11.3498	log10_qual_likelihood_position_model=15.9847	log10_strand_likelihood_position_model=5.40762	new_cov=15/0	polymorphism_quality=5.9	quality=5.9	quality_position_model=Inf	ref_cov=88/124	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=103/124
RA	190	.	NC_007779	847635	0	A	C	bias_e_value=6211.24	bias_p_value=0.0013368	fisher_strand_p_value=0.000134879	frequency=2.748871e-02	genotype_quality=822.0	ks_quality_p_value=1	log10_base_likelihood=-6.69833	log10_qual_likelihood_position_model=13.8788	log10_strand_likelihood_position_model=3.87006	new_cov=9/0	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=79/142	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=88/142
RA	191	.	NC_007779	853114	0	C	G	bias_e_value=1.25551e-06	bias_p_value=2.70215e-13	fisher_strand_p_value=8.07827e-15	frequency=9.548092e-02	genotype_quality=666.6	ks_quality_p_value=1	log10_base_likelihood=-25.4578	log10_qual_likelihood_position_model=17.3091	log10_strand_likelihood_position_model=14.0927	new_cov=0/19	polymorphism_quality=20.2	quality=20.2	quality_position_model=Inf	ref_cov=142/22	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=142/41
RA	192	.	NC_007779	871317	0	T	.	bias_e_value=1146420	bias_p_value=0.246737	fisher_strand_p_value=0.1011	frequency=1.198578e-02	genotype_quality=936.0	ks_quality_p_value=0.65771	log10_base_likelihood=-7.71605	log10_qual_likelihood_position_model=3.02163	log10_strand_likelihood_position_model=0.995249	new_cov=3/0	polymorphism_quality=2.2	quality=2.2	quality_position_model=1.5935e-05	ref_cov=114/133	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=117/133
RA	193	.	NC_007779	881117	1	.	T	bias_e_value=553236	bias_p_value=0.119069	fisher_strand_p_value=0.498424	frequency=6.873131e-03	genotype_quality=1419.5	ks_quality_p_value=0.0511656	log10_base_likelihood=-7.9587	log10_qual_likelihood_position_model=2.0146	log10_strand_likelihood_position_model=0.588712	new_cov=0/2	polymorphism_quality=2.5	quality=2.5	quality_position_model=2.96629e-07	ref_cov=143/146	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=143/148
RA	194	.	NC_007779	881118	0	T	.	bias_e_value=822255	bias_p_value=0.176969	fisher_strand_p_value=0.0555175	frequency=1.364326e-02	genotype_quality=1145.5	ks_quality_p_value=0.766911	log10_base_likelihood=-11.0508	log10_qual_likelihood_position_model=2.57015	log10_strand_likelihood_position_model=1.25557	new_cov=4/0	polymorphism_quality=5.6	quality=5.6	quality_position_model=3.47866e-09	ref_cov=139/150	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=143/150
RA	195	.	NC_007779	887234	0	C	A	frequency=1	genotype_quality=891.7	new_cov=138/100	quality=891.7	ref_cov=0/0	tot_cov=138/100
RA	196	.	NC_007779	888436	0	T	G	bias_e_value=6.61046e-09	bias_p_value=1.42273e-15	fisher_strand_p_value=3.6625e-17	frequency=9.001160e-02	genotype_quality=731.3	ks_quality_p_value=1	log10_base_likelihood=-10.4915	log10_qual_likelihood_position_model=33.2297	log10_strand_likelihood_position_model=16.4362	new_cov=43/0	polymorphism_quality=5.1	quality=5.1	quality_position_model=Inf	ref_cov=72/131	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=115/131
RA	197	.	NC_007779	894943	0	T	G	bias_e_value=4.0363e-07	bias_p_value=8.68706e-14	fisher_strand_p_value=2.50935e-15	frequency=5.504704e-02	genotype_quality=641.0	ks_quality_p_value=1	log10_base_likelihood=-7.52725	log10_qual_likelihood_position_model=24.7888	log10_strand_likelihood_position_model=14.6004	new_cov=21/0	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=25/140	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=47/140
RA	198	.	NC_007779	901188	0	T	C	bias_e_value=9.00446e-05	bias_p_value=1.93797e-11	fisher_strand_p_value=6.67453e-13	frequency=5.692434e-02	genotype_quality=830.5	ks_quality_p_value=1	log10_base_likelihood=-7.54391	log10_qual_likelihood_position_model=19.3726	log10_strand_likelihood_position_model=12.1756	new_cov=0/21	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=181/54	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=181/75
RA	199	.	NC_007779	904838	0	C	A	bias_e_value=5.03772e-06	bias_p_value=1.08424e-12	fisher_strand_p_value=3.92326e-14	frequency=8.829546e-02	genotype_quality=961.6	ks_quality_p_value=0.863187	log10_base_likelihood=-20.6405	log10_qual_likelihood_position_model=33.1733	log10_strand_likelihood_position_model=13.4064	new_cov=34/0	polymorphism_quality=15.4	quality=15.4	quality_position_model=Inf	ref_cov=96/167	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=130/167
RA	200	.	NC_007779	911333	0	T	G	bias_e_value=0.70519	bias_p_value=1.51774e-07	fisher_strand_p_value=8.05759e-09	frequency=6.816912e-02	genotype_quality=491.7	ks_quality_p_value=0.957094	log10_base_likelihood=-10.373	log10_qual_likelihood_position_model=15.2291	log10_strand_likelihood_position_model=8.09379	new_cov=11/0	polymorphism_quality=4.9	quality=4.9	quality_position_model=Inf	ref_cov=19/110	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=31/110
RA	201	.	NC_007779	947970	0	C	A	bias_e_value=49.0498	bias_p_value=1.05567e-05	fisher_strand_p_value=6.95495e-07	frequency=3.041840e-02	genotype_quality=1090.6	ks_quality_p_value=1	log10_base_likelihood=-6.3508	log10_qual_likelihood_position_model=16.7959	log10_strand_likelihood_position_model=6.15771	new_cov=18/0	polymorphism_quality=0.8	quality=0.8	quality_position_model=Inf	ref_cov=130/167	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=148/169
RA	202	.	NC_007779	954820	0	A	C	bias_e_value=3.59595e-15	bias_p_value=7.73933e-22	fisher_strand_p_value=1.44412e-23	frequency=1.310239e-01	genotype_quality=650.5	ks_quality_p_value=1	log10_base_likelihood=-18.2187	log10_qual_likelihood_position_model=35.6573	log10_strand_likelihood_position_model=22.8404	new_cov=0/45	polymorphism_quality=12.9	quality=12.9	quality_position_model=Inf	ref_cov=138/41	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=138/86
RA	203	.	NC_007779	975142	0	T	G	bias_e_value=24.8435	bias_p_value=5.3469e-06	fisher_strand_p_value=3.36163e-07	frequency=3.281689e-02	genotype_quality=563.9	ks_quality_p_value=1	log10_base_likelihood=-7.25394	log10_qual_likelihood_position_model=8.87182	log10_strand_likelihood_position_model=6.47345	new_cov=6/0	polymorphism_quality=1.7	quality=1.7	quality_position_model=Inf	ref_cov=9/136	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=15/136
RA	204	.	NC_007779	985136	0	T	.	bias_e_value=657094	bias_p_value=0.141422	fisher_strand_p_value=0.248272	frequency=1.070499e-02	genotype_quality=1110.6	ks_quality_p_value=0.128046	log10_base_likelihood=-7.92062	log10_qual_likelihood_position_model=2.56557	log10_strand_likelihood_position_model=0.86174	new_cov=0/3	polymorphism_quality=2.4	quality=2.4	quality_position_model=2.34209e-06	ref_cov=135/142	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=135/145
RA	205	.	NC_007779	987436	0	A	C	bias_e_value=7.6185e-05	bias_p_value=1.63968e-11	fisher_strand_p_value=5.61373e-13	frequency=5.404091e-02	genotype_quality=835.6	ks_quality_p_value=1	log10_base_likelihood=-7.00704	log10_qual_likelihood_position_model=33.1959	log10_strand_likelihood_position_model=12.2507	new_cov=0/32	polymorphism_quality=1.5	quality=1.5	quality_position_model=Inf	ref_cov=147/88	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=147/121
RA	206	.	NC_007779	987574	0	G	T	frequency=1	genotype_quality=864.3	new_cov=79/135	quality=864.3	ref_cov=0/0	tot_cov=79/136
RA	207	.	NC_007779	987916	0	T	G	bias_e_value=145.691	bias_p_value=3.13561e-05	fisher_strand_p_value=2.23814e-06	frequency=2.916050e-02	genotype_quality=560.6	ks_quality_p_value=1	log10_base_likelihood=-8.82639	log10_qual_likelihood_position_model=7.22626	log10_strand_likelihood_position_model=5.65011	new_cov=6/0	polymorphism_quality=3.4	quality=3.4	quality_position_model=Inf	ref_cov=13/127	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=19/127
RA	208	.	NC_007779	989543	0	A	.	bias_e_value=1401560	bias_p_value=0.301649	fisher_strand_p_value=0.61731	frequency=1.030064e-02	genotype_quality=1140.8	ks_quality_p_value=0.142402	log10_base_likelihood=-7.87089	log10_qual_likelihood_position_model=2.09203	log10_strand_likelihood_position_model=0.432181	new_cov=2/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=3.02864e-07	ref_cov=141/147	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=143/148
RA	209	.	NC_007779	1002413	0	T	G	bias_e_value=8.55766e-15	bias_p_value=1.84181e-21	fisher_strand_p_value=3.49434e-23	frequency=1.291847e-01	genotype_quality=715.1	ks_quality_p_value=1	log10_base_likelihood=-18.8784	log10_qual_likelihood_position_model=34.306	log10_strand_likelihood_position_model=22.4566	new_cov=47/0	polymorphism_quality=13.6	quality=13.6	quality_position_model=Inf	ref_cov=51/147	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=98/147
RA	210	.	NC_007779	1005102	1	.	T	bias_e_value=3150580	bias_p_value=0.678078	fisher_strand_p_value=0.502738	frequency=8.584023e-03	genotype_quality=1130.2	ks_quality_p_value=0.625186	log10_base_likelihood=-8.1949	log10_qual_likelihood_position_model=1.32055	log10_strand_likelihood_position_model=0.52183	new_cov=0/2	polymorphism_quality=2.7	quality=2.7	quality_position_model=2.75651e-08	ref_cov=105/126	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=105/128
RA	211	.	NC_007779	1006080	0	C	A	bias_e_value=0.830909	bias_p_value=1.78831e-07	fisher_strand_p_value=9.16724e-09	frequency=7.014227e-02	genotype_quality=890.4	ks_quality_p_value=1	log10_base_likelihood=-9.78228	log10_qual_likelihood_position_model=23.6904	log10_strand_likelihood_position_model=8.05525	new_cov=27/0	polymorphism_quality=4.3	quality=4.3	quality_position_model=Inf	ref_cov=121/133	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=148/133
RA	212	.	NC_007779	1013042	0	G	C	bias_e_value=0.361374	bias_p_value=7.77762e-08	fisher_strand_p_value=3.81924e-09	frequency=6.806183e-02	genotype_quality=589.6	ks_quality_p_value=0.999025	log10_base_likelihood=-13.6153	log10_qual_likelihood_position_model=13.4782	log10_strand_likelihood_position_model=8.41802	new_cov=0/12	polymorphism_quality=8.2	quality=8.2	quality_position_model=Inf	ref_cov=126/25	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=126/37
RA	213	.	NC_007779	1023337	0	T	G	bias_e_value=132.63	bias_p_value=2.85451e-05	fisher_strand_p_value=2.04588e-06	frequency=3.378963e-02	genotype_quality=612.3	ks_quality_p_value=0.988768	log10_base_likelihood=-6.6466	log10_qual_likelihood_position_model=8.16836	log10_strand_likelihood_position_model=5.68912	new_cov=6/0	polymorphism_quality=1.1	quality=1.1	quality_position_model=Inf	ref_cov=15/145	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=21/145
RA	214	.	NC_007779	1037604	0	C	G	bias_e_value=4.08579e-14	bias_p_value=8.79359e-21	fisher_strand_p_value=1.72038e-22	frequency=1.535125e-01	genotype_quality=508.8	ks_quality_p_value=1	log10_base_likelihood=-29.8244	log10_qual_likelihood_position_model=24.9113	log10_strand_likelihood_position_model=21.7644	new_cov=25/0	polymorphism_quality=24.6	quality=24.6	quality_position_model=Inf	ref_cov=7/118	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=32/118
RA	215	.	NC_007779	1050592	0	A	C	frequency=1	genotype_quality=-0.1	new_cov=1/0	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	216	.	NC_007779	1050595	0	C	T	frequency=1	genotype_quality=-0.1	new_cov=1/0	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	217	.	NC_007779	1070900	1	.	A	bias_e_value=2462410	bias_p_value=0.52997	fisher_strand_p_value=0.498628	frequency=8.163452e-03	genotype_quality=1180.3	ks_quality_p_value=0.41125	log10_base_likelihood=-8.60459	log10_qual_likelihood_position_model=1.83704	log10_strand_likelihood_position_model=0.572382	new_cov=2/0	polymorphism_quality=3.1	quality=3.1	quality_position_model=4.00708e-08	ref_cov=125/118	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=127/118
RA	218	.	NC_007779	1077331	0	A	C	bias_e_value=3.79117e-06	bias_p_value=8.1595e-13	fisher_strand_p_value=2.52539e-14	frequency=6.856537e-02	genotype_quality=718.1	ks_quality_p_value=1	log10_base_likelihood=-6.09417	log10_qual_likelihood_position_model=40.0656	log10_strand_likelihood_position_model=13.5977	new_cov=0/35	polymorphism_quality=0.6	quality=0.6	quality_position_model=Inf	ref_cov=129/72	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=129/107
RA	219	.	NC_007779	1079013	0	C	A	bias_e_value=7.83982	bias_p_value=1.68731e-06	fisher_strand_p_value=9.8481e-08	frequency=7.007742e-02	genotype_quality=764.9	ks_quality_p_value=1	log10_base_likelihood=-12.8654	log10_qual_likelihood_position_model=16.7606	log10_strand_likelihood_position_model=7.1284	new_cov=25/0	polymorphism_quality=7.5	quality=7.5	quality_position_model=Inf	ref_cov=108/112	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=133/112
RA	220	.	NC_007779	1086017	0	A	C	bias_e_value=6.64661e-15	bias_p_value=1.43051e-21	fisher_strand_p_value=2.70081e-23	frequency=1.260767e-01	genotype_quality=758.0	ks_quality_p_value=1	log10_base_likelihood=-14.6313	log10_qual_likelihood_position_model=40.4219	log10_strand_likelihood_position_model=22.5685	new_cov=0/54	polymorphism_quality=9.3	quality=9.3	quality_position_model=Inf	ref_cov=145/64	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=145/121
RA	221	.	NC_007779	1093686	0	T	C	frequency=1	genotype_quality=1242.2	new_cov=134/149	quality=1242.2	ref_cov=0/0	tot_cov=134/149
RA	222	.	NC_007779	1097580	0	C	T	bias_e_value=17211.4	bias_p_value=0.0037043	fisher_strand_p_value=0.192642	frequency=1.946702e-01	genotype_quality=907.0	ks_quality_p_value=0.00219269	log10_base_likelihood=-196.78	log10_qual_likelihood_position_model=22.9911	log10_strand_likelihood_position_model=1.38564	new_cov=38/36	polymorphism_quality=192.0	quality=192.0	quality_position_model=4.85273e-175	ref_cov=129/174	tot_cov=167/210
RA	223	.	NC_007779	1105181	1	.	T	bias_e_value=4441020	bias_p_value=0.955812	fisher_strand_p_value=1	frequency=7.547379e-03	genotype_quality=1282.4	ks_quality_p_value=0.717845	log10_base_likelihood=-8.15576	log10_qual_likelihood_position_model=2.28137	log10_strand_likelihood_position_model=0.299543	new_cov=1/1	polymorphism_quality=2.7	quality=2.7	quality_position_model=1.75637e-07	ref_cov=134/129	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=135/130
RA	224	.	NC_007779	1115091	0	C	A	bias_e_value=105.23	bias_p_value=2.2648e-05	fisher_strand_p_value=1.57717e-06	frequency=5.458498e-02	genotype_quality=694.8	ks_quality_p_value=1	log10_base_likelihood=-11.0471	log10_qual_likelihood_position_model=13.0984	log10_strand_likelihood_position_model=5.80212	new_cov=0/11	polymorphism_quality=5.6	quality=5.6	quality_position_model=Inf	ref_cov=130/49	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=130/60
RA	225	.	NC_007779	1115100	0	C	G	bias_e_value=621.037	bias_p_value=0.000133662	fisher_strand_p_value=1.09411e-05	frequency=4.370975e-02	genotype_quality=819.9	ks_quality_p_value=0.981933	log10_base_likelihood=-7.15644	log10_qual_likelihood_position_model=19.9841	log10_strand_likelihood_position_model=4.96094	new_cov=0/15	polymorphism_quality=1.6	quality=1.6	quality_position_model=Inf	ref_cov=130/106	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=130/121
RA	226	.	NC_007779	1116582	0	G	C	bias_e_value=4.13314e-22	bias_p_value=8.89549e-29	fisher_strand_p_value=1.28756e-30	frequency=1.884460e-01	genotype_quality=498.8	ks_quality_p_value=0.989297	log10_base_likelihood=-74.4099	log10_qual_likelihood_position_model=26.6402	log10_strand_likelihood_position_model=29.8902	new_cov=0/33	polymorphism_quality=69.4	quality=69.4	quality_position_model=4.98165e-20	ref_cov=136/5	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=136/38
RA	227	.	NC_007779	1118207	1	.	T	bias_e_value=3821050	bias_p_value=0.82238	fisher_strand_p_value=0.507027	frequency=7.167816e-03	genotype_quality=1355.4	ks_quality_p_value=0.920524	log10_base_likelihood=-7.90208	log10_qual_likelihood_position_model=1.09782	log10_strand_likelihood_position_model=0.495092	new_cov=0/2	polymorphism_quality=2.4	quality=2.4	quality_position_model=3.05568e-08	ref_cov=121/156	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=121/158
RA	228	.	NC_007779	1132905	0	G	C	bias_e_value=257.53	bias_p_value=5.54265e-05	fisher_strand_p_value=4.18151e-06	frequency=4.787779e-02	genotype_quality=617.0	ks_quality_p_value=0.989533	log10_base_likelihood=-11.4688	log10_qual_likelihood_position_model=11.6426	log10_strand_likelihood_position_model=5.37867	new_cov=9/0	polymorphism_quality=6.1	quality=6.1	quality_position_model=Inf	ref_cov=37/124	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=46/124
RA	229	.	NC_007779	1151485	0	C	A	bias_e_value=250.427	bias_p_value=5.38977e-05	fisher_strand_p_value=4.01455e-06	frequency=5.140257e-02	genotype_quality=829.5	ks_quality_p_value=1	log10_base_likelihood=-11.6623	log10_qual_likelihood_position_model=13.1195	log10_strand_likelihood_position_model=5.66573	new_cov=18/0	polymorphism_quality=6.3	quality=6.3	quality_position_model=Inf	ref_cov=110/127	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=130/127
RA	230	.	NC_007779	1158848	0	T	G	bias_e_value=4.24951e-25	bias_p_value=9.14595e-32	fisher_strand_p_value=1.19071e-33	frequency=2.175031e-01	genotype_quality=626.3	ks_quality_p_value=1	log10_base_likelihood=-40.8847	log10_qual_likelihood_position_model=49.472	log10_strand_likelihood_position_model=32.9242	new_cov=75/0	polymorphism_quality=35.8	quality=35.8	quality_position_model=Inf	ref_cov=45/138	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=120/138
RA	231	.	NC_007779	1159410	1	.	A	bias_e_value=3169130	bias_p_value=0.682071	fisher_strand_p_value=1	frequency=6.711006e-03	genotype_quality=1450.5	ks_quality_p_value=0.31777	log10_base_likelihood=-8.11948	log10_qual_likelihood_position_model=2.62475	log10_strand_likelihood_position_model=0.30006	new_cov=1/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=4.35605e-07	ref_cov=143/153	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=144/154
RA	232	.	NC_007779	1163018	0	T	G	bias_e_value=2.13443e-06	bias_p_value=4.5938e-13	fisher_strand_p_value=1.39619e-14	frequency=1.042786e-01	genotype_quality=821.4	ks_quality_p_value=1	log10_base_likelihood=-15.8891	log10_qual_likelihood_position_model=35.4313	log10_strand_likelihood_position_model=13.8551	new_cov=37/0	polymorphism_quality=10.6	quality=10.6	quality_position_model=Inf	ref_cov=87/144	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=124/144
RA	233	.	NC_007779	1164942	0	A	G	bias_e_value=0.000170673	bias_p_value=3.67329e-11	fisher_strand_p_value=1.29465e-12	frequency=1.092634e-01	genotype_quality=466.3	ks_quality_p_value=1	log10_base_likelihood=-18.7636	log10_qual_likelihood_position_model=19.3628	log10_strand_likelihood_position_model=11.8878	new_cov=17/0	polymorphism_quality=13.5	quality=13.5	quality_position_model=Inf	ref_cov=19/110	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=36/110
RA	234	.	NC_007779	1164944	0	T	G	bias_e_value=4.30614e-05	bias_p_value=9.26783e-12	fisher_strand_p_value=3.11012e-13	frequency=7.779121e-02	genotype_quality=524.1	ks_quality_p_value=1	log10_base_likelihood=-7.48447	log10_qual_likelihood_position_model=23.7198	log10_strand_likelihood_position_model=12.5105	new_cov=19/1	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=17/112	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=36/113
RA	235	.	NC_007779	1170375	1	.	T	bias_e_value=4139400	bias_p_value=0.890896	fisher_strand_p_value=1	frequency=1.666641e-02	genotype_quality=1138.6	ks_quality_p_value=0.57087	log10_base_likelihood=-17.8216	log10_qual_likelihood_position_model=3.10744	log10_strand_likelihood_position_model=0.428431	new_cov=2/2	polymorphism_quality=12.5	quality=12.5	quality_position_model=2.18051e-16	ref_cov=108/128	reject=INDEL_HOMOPOLYMER	tot_cov=110/130
RA	236	.	NC_007779	1170573	0	C	T	frequency=1	genotype_quality=1067.8	new_cov=173/92	quality=1067.8	ref_cov=0/0	tot_cov=173/92
RA	237	.	NC_007779	1177683	0	A	G	bias_e_value=8.03693e-13	bias_p_value=1.72974e-19	fisher_strand_p_value=3.59808e-21	frequency=1.313877e-01	genotype_quality=606.1	ks_quality_p_value=1	log10_base_likelihood=-28.0527	log10_qual_likelihood_position_model=27.3235	log10_strand_likelihood_position_model=20.4439	new_cov=29/0	polymorphism_quality=22.8	quality=22.8	quality_position_model=Inf	ref_cov=23/150	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=53/150
RA	238	.	NC_007779	1201516	1	.	A	bias_e_value=4350690	bias_p_value=0.936371	fisher_strand_p_value=1	frequency=6.732941e-03	genotype_quality=1458.0	ks_quality_p_value=0.665176	log10_base_likelihood=-6.93647	log10_qual_likelihood_position_model=2.91062	log10_strand_likelihood_position_model=0.300674	new_cov=1/1	polymorphism_quality=1.4	quality=1.4	quality_position_model=1.49614e-05	ref_cov=140/155	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=141/156
RA	239	.	NC_007779	1215933	0	C	A	bias_e_value=0.00569041	bias_p_value=1.22471e-09	fisher_strand_p_value=5.07455e-11	frequency=5.699062e-02	genotype_quality=862.3	ks_quality_p_value=0.975973	log10_base_likelihood=-11.1819	log10_qual_likelihood_position_model=20.6158	log10_strand_likelihood_position_model=10.2946	new_cov=0/17	polymorphism_quality=5.8	quality=5.8	quality_position_model=Inf	ref_cov=169/47	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=169/64
RA	240	.	NC_007779	1223826	0	T	C	bias_e_value=0.00219635	bias_p_value=4.72706e-10	fisher_strand_p_value=1.83791e-11	frequency=6.672144e-02	genotype_quality=574.2	ks_quality_p_value=1	log10_base_likelihood=-8.3445	log10_qual_likelihood_position_model=14.7524	log10_strand_likelihood_position_model=10.7357	new_cov=0/17	polymorphism_quality=2.9	quality=2.9	quality_position_model=Inf	ref_cov=130/31	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=130/48
RA	241	.	NC_007779	1224173	0	G	A	bias_e_value=0.000485287	bias_p_value=1.04445e-10	fisher_strand_p_value=3.8274e-12	frequency=1.139760e-01	genotype_quality=727.7	ks_quality_p_value=1	log10_base_likelihood=-26.6751	log10_qual_likelihood_position_model=28.0541	log10_strand_likelihood_position_model=11.4171	new_cov=0/29	polymorphism_quality=21.5	quality=21.5	quality_position_model=Inf	ref_cov=132/75	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=132/104
RA	242	.	NC_007779	1225577	1	.	G	bias_e_value=2633080	bias_p_value=0.566701	fisher_strand_p_value=0.242591	frequency=6.622314e-03	genotype_quality=1489.0	ks_quality_p_value=0.944388	log10_base_likelihood=-7.97771	log10_qual_likelihood_position_model=1.5901	log10_strand_likelihood_position_model=0.615125	new_cov=2/0	polymorphism_quality=2.5	quality=2.5	quality_position_model=1.09625e-07	ref_cov=147/153	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=149/153
RA	243	.	NC_007779	1229345	1	.	A	bias_e_value=4646100	bias_p_value=0.999951	fisher_strand_p_value=1	frequency=7.091522e-03	genotype_quality=1377.0	ks_quality_p_value=0.99012	log10_base_likelihood=-7.78237	log10_qual_likelihood_position_model=2.72286	log10_strand_likelihood_position_model=0.305847	new_cov=1/1	polymorphism_quality=2.3	quality=2.3	quality_position_model=1.25304e-06	ref_cov=157/123	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=158/124
RA	244	.	NC_007779	1241567	0	A	.	bias_e_value=3405630	bias_p_value=0.732971	fisher_strand_p_value=1	frequency=1.093674e-02	genotype_quality=1082.5	ks_quality_p_value=0.365102	log10_base_likelihood=-7.63226	log10_qual_likelihood_position_model=2.52756	log10_strand_likelihood_position_model=0.421222	new_cov=1/2	polymorphism_quality=2.1	quality=2.1	quality_position_model=1.48297e-06	ref_cov=135/136	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=136/138
RA	245	.	NC_007779	1260547	0	T	G	bias_e_value=0.120094	bias_p_value=2.58471e-08	fisher_strand_p_value=1.1999e-09	frequency=4.558086e-02	genotype_quality=607.3	ks_quality_p_value=1	log10_base_likelihood=-6.36215	log10_qual_likelihood_position_model=14.1422	log10_strand_likelihood_position_model=8.92085	new_cov=13/0	polymorphism_quality=0.8	quality=0.8	quality_position_model=Inf	ref_cov=28/134	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=41/134
RA	246	.	NC_007779	1273399	0	T	G	bias_e_value=1.36198e-33	bias_p_value=2.93129e-40	fisher_strand_p_value=3.03451e-42	frequency=1.891813e-01	genotype_quality=715.2	ks_quality_p_value=1	log10_base_likelihood=-42.2671	log10_qual_likelihood_position_model=55.3303	log10_strand_likelihood_position_model=41.5179	new_cov=63/0	polymorphism_quality=37.1	quality=37.1	quality_position_model=Inf	ref_cov=20/170	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=83/170
RA	247	.	NC_007779	1288364	0	G	A	deleted=1	frequency=1	genotype_quality=25.1	new_cov=5/4	quality=25.1	ref_cov=0/0	tot_cov=5/4
RA	248	.	NC_007779	1288370	0	A	G	deleted=1	frequency=1	genotype_quality=12.6	new_cov=5/1	quality=12.6	ref_cov=0/0	tot_cov=5/1
RA	249	.	NC_007779	1288462	0	T	C	deleted=1	frequency=1	genotype_quality=25.4	new_cov=9/8	quality=25.4	ref_cov=0/0	tot_cov=9/8
RA	250	.	NC_007779	1294035	0	T	A	bias_e_value=670.547	bias_p_value=0.000144318	fisher_strand_p_value=1.16783e-05	frequency=4.378223e-02	genotype_quality=1096.7	ks_quality_p_value=1	log10_base_likelihood=-10.6169	log10_qual_likelihood_position_model=25.4074	log10_strand_likelihood_position_model=4.94938	new_cov=1/15	polymorphism_quality=5.2	quality=5.2	quality_position_model=Inf	ref_cov=188/119	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=189/134
RA	251	.	NC_007779	1303503	0	A	.	bias_e_value=4534510	bias_p_value=0.975933	fisher_strand_p_value=1	frequency=1.139832e-02	genotype_quality=1041.9	ks_quality_p_value=0.788784	log10_base_likelihood=-7.99989	log10_qual_likelihood_position_model=1.91031	log10_strand_likelihood_position_model=0.413128	new_cov=2/1	polymorphism_quality=2.5	quality=2.5	quality_position_model=1.37831e-07	ref_cov=133/127	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=135/128
RA	252	.	NC_007779	1318876	0	G	A	frequency=1	genotype_quality=1107.3	new_cov=150/123	quality=1107.3	ref_cov=0/0	tot_cov=150/123
RA	253	.	NC_007779	1324190	0	T	C	bias_e_value=0.0616143	bias_p_value=1.32608e-08	fisher_strand_p_value=5.96251e-10	frequency=6.068754e-02	genotype_quality=668.5	ks_quality_p_value=1	log10_base_likelihood=-5.97526	log10_qual_likelihood_position_model=15.0578	log10_strand_likelihood_position_model=9.22457	new_cov=0/18	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=138/52	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=138/70
RA	254	.	NC_007779	1330179	0	T	G	bias_e_value=0.000159492	bias_p_value=3.43265e-11	fisher_strand_p_value=1.20685e-12	frequency=7.091999e-02	genotype_quality=715.7	ks_quality_p_value=1	log10_base_likelihood=-12.835	log10_qual_likelihood_position_model=25.3482	log10_strand_likelihood_position_model=11.9183	new_cov=30/0	polymorphism_quality=7.5	quality=7.5	quality_position_model=Inf	ref_cov=70/127	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=100/127
RA	255	.	NC_007779	1337405	0	T	G	bias_e_value=2.78083e-07	bias_p_value=5.98501e-14	fisher_strand_p_value=1.70989e-15	frequency=4.066658e-02	genotype_quality=831.3	ks_quality_p_value=1	log10_base_likelihood=-6.95131	log10_qual_likelihood_position_model=29.0753	log10_strand_likelihood_position_model=14.767	new_cov=30/0	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=63/164	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=93/164
RA	256	.	NC_007779	1352913	1	.	T	bias_e_value=8849.38	bias_p_value=0.0019046	fisher_strand_p_value=0.000201185	frequency=4.705906e-02	genotype_quality=743.9	ks_quality_p_value=0.994785	log10_base_likelihood=-36.7446	log10_qual_likelihood_position_model=5.61145	log10_strand_likelihood_position_model=3.6964	new_cov=8/0	polymorphism_quality=31.6	quality=31.6	quality_position_model=1.11897e-29	ref_cov=53/109	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,INDEL_HOMOPOLYMER	tot_cov=61/109
RA	257	.	NC_007779	1352918	0	C	T	bias_e_value=358.096	bias_p_value=7.70706e-05	fisher_strand_p_value=5.9109e-06	frequency=4.647207e-02	genotype_quality=523.4	ks_quality_p_value=1	log10_base_likelihood=-6.61812	log10_qual_likelihood_position_model=7.26764	log10_strand_likelihood_position_model=5.22835	new_cov=8/0	polymorphism_quality=1.1	quality=1.1	quality_position_model=Inf	ref_cov=27/110	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=35/110
RA	258	.	NC_007779	1352922	0	T	C	bias_e_value=0.290364	bias_p_value=6.24932e-08	fisher_strand_p_value=3.16747e-09	frequency=7.572746e-02	genotype_quality=442.6	ks_quality_p_value=0.957094	log10_base_likelihood=-12.5667	log10_qual_likelihood_position_model=13.3329	log10_strand_likelihood_position_model=8.49929	new_cov=11/0	polymorphism_quality=7.2	quality=7.2	quality_position_model=Inf	ref_cov=17/112	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=28/112
RA	259	.	NC_007779	1352924	0	A	C	bias_e_value=39.0622	bias_p_value=8.40711e-06	fisher_strand_p_value=5.45129e-07	frequency=5.812216e-02	genotype_quality=448.1	ks_quality_p_value=1	log10_base_likelihood=-10.2524	log10_qual_likelihood_position_model=13.1134	log10_strand_likelihood_position_model=6.27078	new_cov=10/1	polymorphism_quality=4.8	quality=4.8	quality_position_model=Inf	ref_cov=21/112	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=31/113
RA	260	.	NC_007779	1371749	1	.	T	bias_e_value=3205140	bias_p_value=0.689822	fisher_strand_p_value=1	frequency=2.167130e-02	genotype_quality=1507.2	ks_quality_p_value=0.324595	log10_base_likelihood=-29.5328	log10_qual_likelihood_position_model=6.44124	log10_strand_likelihood_position_model=0.547943	new_cov=3/4	polymorphism_quality=24.3	quality=24.3	quality_position_model=9.63569e-25	ref_cov=154/162	reject=INDEL_HOMOPOLYMER	tot_cov=157/166
RA	261	.	NC_007779	1374596	0	C	A	bias_e_value=64.9041	bias_p_value=1.39689e-05	fisher_strand_p_value=9.68816e-07	frequency=5.322313e-02	genotype_quality=866.1	ks_quality_p_value=0.969078	log10_base_likelihood=-9.73818	log10_qual_likelihood_position_model=21.9306	log10_strand_likelihood_position_model=6.15	new_cov=20/0	polymorphism_quality=4.3	quality=4.3	quality_position_model=Inf	ref_cov=113/127	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=134/127
RA	262	.	NC_007779	1374996	0	A	C	bias_e_value=4224.89	bias_p_value=0.000909296	fisher_strand_p_value=8.79504e-05	frequency=1.681805e-02	genotype_quality=743.3	ks_quality_p_value=1	log10_base_likelihood=-5.7266	log10_qual_likelihood_position_model=8.45668	log10_strand_likelihood_position_model=4.05576	new_cov=5/0	polymorphism_quality=0.2	quality=0.2	quality_position_model=Inf	ref_cov=27/164	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=33/164
RA	263	.	NC_007779	1378219	0	A	C	bias_e_value=6.29039e-16	bias_p_value=1.35384e-22	fisher_strand_p_value=2.44517e-24	frequency=1.173315e-01	genotype_quality=627.2	ks_quality_p_value=1	log10_base_likelihood=-14.7709	log10_qual_likelihood_position_model=41.1357	log10_strand_likelihood_position_model=23.6117	new_cov=0/39	polymorphism_quality=9.4	quality=9.4	quality_position_model=Inf	ref_cov=134/26	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=134/67
RA	264	.	NC_007779	1378854	0	A	C	bias_e_value=2.03793e-13	bias_p_value=4.38611e-20	fisher_strand_p_value=8.86536e-22	frequency=9.271049e-02	genotype_quality=765.2	ks_quality_p_value=1	log10_base_likelihood=-11.21	log10_qual_likelihood_position_model=38.2924	log10_strand_likelihood_position_model=21.0523	new_cov=0/53	polymorphism_quality=5.8	quality=5.8	quality_position_model=Inf	ref_cov=141/69	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=141/123
RA	265	.	NC_007779	1386502	0	T	G	bias_e_value=0.00359488	bias_p_value=7.73703e-10	fisher_strand_p_value=3.0694e-11	frequency=7.009125e-02	genotype_quality=663.1	ks_quality_p_value=1	log10_base_likelihood=-6.20169	log10_qual_likelihood_position_model=29.3334	log10_strand_likelihood_position_model=10.5205	new_cov=29/1	polymorphism_quality=0.7	quality=0.7	quality_position_model=Inf	ref_cov=66/124	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=97/125
RA	266	.	NC_007779	1405508	0	G	T	bias_e_value=5.0893e-14	bias_p_value=1.09534e-20	fisher_strand_p_value=2.1573e-22	frequency=1.576962e-01	genotype_quality=552.1	ks_quality_p_value=0.997705	log10_base_likelihood=-69.5896	log10_qual_likelihood_position_model=22.2763	log10_strand_likelihood_position_model=21.6661	new_cov=26/0	polymorphism_quality=64.6	quality=64.6	quality_position_model=7.12418e-28	ref_cov=10/128	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=36/128
RA	267	.	NC_007779	1409137	0	G	T	bias_e_value=4.43406e-08	bias_p_value=9.54315e-15	fisher_strand_p_value=2.58686e-16	frequency=1.559553e-01	genotype_quality=766.7	ks_quality_p_value=1	log10_base_likelihood=-32.9743	log10_qual_likelihood_position_model=24.8018	log10_strand_likelihood_position_model=15.6291	new_cov=0/53	polymorphism_quality=27.8	quality=27.8	quality_position_model=Inf	ref_cov=126/104	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=126/159
RA	268	.	NC_007779	1410956	1	.	T	bias_e_value=3944860	bias_p_value=0.849026	fisher_strand_p_value=1	frequency=6.711006e-03	genotype_quality=1427.7	ks_quality_p_value=0.503556	log10_base_likelihood=-7.85235	log10_qual_likelihood_position_model=1.65031	log10_strand_likelihood_position_model=0.30006	new_cov=1/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=8.05187e-08	ref_cov=143/153	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=144/154
RA	269	.	NC_007779	1429932	0	C	A	deleted=1	frequency=1	genotype_quality=1.0	new_cov=1/0	quality=1.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	270	.	NC_007779	1430307	0	T	A	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	271	.	NC_007779	1430324	0	A	T	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	272	.	NC_007779	1430325	0	G	T	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	273	.	NC_007779	1430327	0	G	C	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	274	.	NC_007779	1430328	0	G	A	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	275	.	NC_007779	1430329	0	T	C	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	276	.	NC_007779	1430333	0	A	G	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	277	.	NC_007779	1430336	0	C	T	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	278	.	NC_007779	1430366	0	G	C	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	279	.	NC_007779	1430368	0	G	A	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	280	.	NC_007779	1430383	0	G	T	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	281	.	NC_007779	1430909	0	C	G	deleted=1	frequency=1	genotype_quality=1.2	new_cov=1/0	quality=1.2	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	282	.	NC_007779	1433612	0	T	A	deleted=1	frequency=1	genotype_quality=3.7	new_cov=1/0	quality=3.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	283	.	NC_007779	1433621	0	G	A	deleted=1	frequency=1	genotype_quality=4.0	new_cov=1/0	quality=4.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	284	.	NC_007779	1433624	0	T	C	deleted=1	frequency=1	genotype_quality=4.4	new_cov=1/0	quality=4.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	285	.	NC_007779	1433630	0	C	G	deleted=1	frequency=1	genotype_quality=4.5	new_cov=1/0	quality=4.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	286	.	NC_007779	1433636	0	T	C	deleted=1	frequency=1	genotype_quality=4.4	new_cov=1/0	quality=4.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	287	.	NC_007779	1433642	0	T	C	deleted=1	frequency=1	genotype_quality=4.2	new_cov=1/0	quality=4.2	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	288	.	NC_007779	1433648	0	G	T	deleted=1	frequency=1	genotype_quality=4.0	new_cov=1/0	quality=4.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	289	.	NC_007779	1433651	0	C	T	deleted=1	frequency=1	genotype_quality=4.0	new_cov=1/0	quality=4.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	290	.	NC_007779	1433672	0	C	T	deleted=1	frequency=1	genotype_quality=4.0	new_cov=1/0	quality=4.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	291	.	NC_007779	1433675	0	C	A	deleted=1	frequency=1	genotype_quality=3.9	new_cov=1/0	quality=3.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	292	.	NC_007779	1433681	0	A	G	deleted=1	frequency=1	genotype_quality=4.1	new_cov=1/0	quality=4.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	293	.	NC_007779	1433687	0	T	C	deleted=1	frequency=1	genotype_quality=4.2	new_cov=1/0	quality=4.2	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	294	.	NC_007779	1433696	0	C	T	deleted=1	frequency=1	genotype_quality=3.7	new_cov=1/0	quality=3.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	295	.	NC_007779	1433702	0	C	T	deleted=1	frequency=1	genotype_quality=3.3	new_cov=1/0	quality=3.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	296	.	NC_007779	1437439	0	C	A	bias_e_value=376.694	bias_p_value=8.10734e-05	fisher_strand_p_value=6.24417e-06	frequency=2.940941e-02	genotype_quality=784.3	ks_quality_p_value=1	log10_base_likelihood=-8.48557	log10_qual_likelihood_position_model=9.33341	log10_strand_likelihood_position_model=5.20453	new_cov=0/6	polymorphism_quality=3.0	quality=3.0	quality_position_model=Inf	ref_cov=162/22	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=162/28
RA	297	.	NC_007779	1437441	0	G	A	bias_e_value=1.29087	bias_p_value=2.77826e-07	fisher_strand_p_value=1.46541e-08	frequency=4.515457e-02	genotype_quality=770.9	ks_quality_p_value=0.99559	log10_base_likelihood=-12.488	log10_qual_likelihood_position_model=13.0354	log10_strand_likelihood_position_model=7.83404	new_cov=0/9	polymorphism_quality=7.1	quality=7.1	quality_position_model=Inf	ref_cov=166/21	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=166/30
RA	298	.	NC_007779	1437447	0	G	C	bias_e_value=8.09842e-15	bias_p_value=1.74297e-21	fisher_strand_p_value=3.3033e-23	frequency=1.425648e-01	genotype_quality=748.0	ks_quality_p_value=1	log10_base_likelihood=-33.3162	log10_qual_likelihood_position_model=30.2387	log10_strand_likelihood_position_model=22.4811	new_cov=0/42	polymorphism_quality=28.1	quality=28.1	quality_position_model=Inf	ref_cov=163/47	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=163/89
RA	299	.	NC_007779	1438937	0	T	.	bias_e_value=3348510	bias_p_value=0.720677	fisher_strand_p_value=0.442319	frequency=2.509022e-02	genotype_quality=941.9	ks_quality_p_value=0.79829	log10_base_likelihood=-17.3782	log10_qual_likelihood_position_model=4.13427	log10_strand_likelihood_position_model=0.639637	new_cov=4/2	polymorphism_quality=12.1	quality=12.1	quality_position_model=1.11267e-14	ref_cov=114/119	reject=INDEL_HOMOPOLYMER	tot_cov=118/121
RA	300	.	NC_007779	1442205	0	G	C	bias_e_value=0.385572	bias_p_value=8.29841e-08	fisher_strand_p_value=4.08466e-09	frequency=4.841328e-02	genotype_quality=646.2	ks_quality_p_value=1	log10_base_likelihood=-9.86105	log10_qual_likelihood_position_model=11.9667	log10_strand_likelihood_position_model=8.38884	new_cov=0/9	polymorphism_quality=4.4	quality=4.4	quality_position_model=Inf	ref_cov=142/14	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=142/24
RA	301	.	NC_007779	1457432	0	G	T	bias_e_value=2917970	bias_p_value=0.628016	fisher_strand_p_value=1	frequency=1.072884e-02	genotype_quality=1162.0	ks_quality_p_value=0.273451	log10_base_likelihood=-6.69185	log10_qual_likelihood_position_model=2.65197	log10_strand_likelihood_position_model=0.377665	new_cov=2/1	polymorphism_quality=1.2	quality=1.2	quality_position_model=1.74298e-05	ref_cov=156/120	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=158/121
RA	302	.	NC_007779	1467858	0	G	T	bias_e_value=4638860	bias_p_value=0.998393	fisher_strand_p_value=1	frequency=1.310539e-02	genotype_quality=1145.3	ks_quality_p_value=0.943841	log10_base_likelihood=-6.35244	log10_qual_likelihood_position_model=7.32751	log10_strand_likelihood_position_model=0.514349	new_cov=3/3	polymorphism_quality=0.8	quality=0.8	quality_position_model=Inf	ref_cov=130/160	reject=EVALUE	tot_cov=133/163
RA	303	.	NC_007779	1468152	0	T	G	bias_e_value=54309.1	bias_p_value=0.0116886	fisher_strand_p_value=0.00156715	frequency=2.581406e-02	genotype_quality=882.3	ks_quality_p_value=1	log10_base_likelihood=-7.7368	log10_qual_likelihood_position_model=8.65184	log10_strand_likelihood_position_model=2.80489	new_cov=0/9	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=128/117	reject=POLYMORPHISM_STRAND	tot_cov=128/126
RA	304	.	NC_007779	1483588	0	G	A	frequency=1	genotype_quality=748.5	new_cov=144/50	quality=748.5	ref_cov=0/0	tot_cov=144/50
RA	305	.	NC_007779	1483616	0	C	G	bias_e_value=0.000784767	bias_p_value=1.689e-10	fisher_strand_p_value=6.31074e-12	frequency=7.215548e-02	genotype_quality=628.8	ks_quality_p_value=0.999038	log10_base_likelihood=-18.4551	log10_qual_likelihood_position_model=13.6302	log10_strand_likelihood_position_model=11.1999	new_cov=0/13	polymorphism_quality=13.2	quality=13.2	quality_position_model=Inf	ref_cov=142/16	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=142/29
RA	306	.	NC_007779	1484416	0	G	C	bias_e_value=25060.5	bias_p_value=0.00539361	fisher_strand_p_value=0.000666187	frequency=3.055382e-02	genotype_quality=792.5	ks_quality_p_value=0.970296	log10_base_likelihood=-8.12954	log10_qual_likelihood_position_model=8.22065	log10_strand_likelihood_position_model=3.1764	new_cov=0/7	polymorphism_quality=2.6	quality=2.6	quality_position_model=Inf	ref_cov=140/72	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=140/79
RA	307	.	NC_007779	1492812	0	A	C	bias_e_value=1.79304e-06	bias_p_value=3.85905e-13	fisher_strand_p_value=1.1665e-14	frequency=6.094599e-02	genotype_quality=827.2	ks_quality_p_value=1	log10_base_likelihood=-6.35037	log10_qual_likelihood_position_model=43.4056	log10_strand_likelihood_position_model=13.9331	new_cov=0/41	polymorphism_quality=0.8	quality=0.8	quality_position_model=Inf	ref_cov=145/102	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=145/143
RA	308	.	NC_007779	1493616	0	G	A	bias_e_value=5782.53	bias_p_value=0.00124454	fisher_strand_p_value=0.00012457	frequency=2.920818e-02	genotype_quality=966.2	ks_quality_p_value=1	log10_base_likelihood=-7.68198	log10_qual_likelihood_position_model=12.5975	log10_strand_likelihood_position_model=3.90459	new_cov=0/8	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=165/75	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=165/83
RA	309	.	NC_007779	1493621	0	T	C	bias_e_value=7.92953	bias_p_value=1.70662e-06	fisher_strand_p_value=9.96782e-08	frequency=4.605865e-02	genotype_quality=842.7	ks_quality_p_value=1	log10_base_likelihood=-11.5639	log10_qual_likelihood_position_model=14.2098	log10_strand_likelihood_position_model=7.0014	new_cov=0/14	polymorphism_quality=6.2	quality=6.2	quality_position_model=Inf	ref_cov=163/68	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=164/83
RA	310	.	NC_007779	1496775	0	T	.	frequency=1	genotype_quality=1346.3	new_cov=113/161	quality=1346.3	ref_cov=0/1	tot_cov=113/162
RA	311	.	NC_007779	1507752	0	A	C	bias_e_value=0.0141937	bias_p_value=3.05482e-09	fisher_strand_p_value=1.28488e-10	frequency=4.645872e-02	genotype_quality=755.6	ks_quality_p_value=1	log10_base_likelihood=-5.68321	log10_qual_likelihood_position_model=18.78	log10_strand_likelihood_position_model=9.89114	new_cov=0/20	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=149/60	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=149/80
RA	312	.	NC_007779	1512494	1	.	A	bias_e_value=2680010	bias_p_value=0.576801	fisher_strand_p_value=1	frequency=7.873535e-03	genotype_quality=1232.3	ks_quality_p_value=0.236025	log10_base_likelihood=-7.9705	log10_qual_likelihood_position_model=1.85565	log10_strand_likelihood_position_model=0.302587	new_cov=1/1	polymorphism_quality=2.5	quality=2.5	quality_position_model=9.97078e-08	ref_cov=115/137	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=116/138
RA	313	.	NC_007779	1512930	0	T	C	bias_e_value=1.51472e-06	bias_p_value=3.26004e-13	fisher_strand_p_value=9.80282e-15	frequency=8.020306e-02	genotype_quality=759.3	ks_quality_p_value=1	log10_base_likelihood=-9.31421	log10_qual_likelihood_position_model=22.9121	log10_strand_likelihood_position_model=14.0086	new_cov=0/28	polymorphism_quality=3.9	quality=3.9	quality_position_model=Inf	ref_cov=160/60	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=160/88
RA	314	.	NC_007779	1515709	0	A	G	bias_e_value=3.02165e-19	bias_p_value=6.5033e-26	fisher_strand_p_value=1.02998e-27	frequency=2.163944e-01	genotype_quality=625.1	ks_quality_p_value=1	log10_base_likelihood=-68.1905	log10_qual_likelihood_position_model=52.786	log10_strand_likelihood_position_model=26.9872	new_cov=62/0	polymorphism_quality=63.2	quality=63.2	quality_position_model=Inf	ref_cov=58/150	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=121/150
RA	315	.	NC_007779	1515714	0	A	T	bias_e_value=0.0195651	bias_p_value=4.21087e-09	fisher_strand_p_value=1.79644e-10	frequency=9.491396e-02	genotype_quality=793.7	ks_quality_p_value=1	log10_base_likelihood=-24.1099	log10_qual_likelihood_position_model=32.2358	log10_strand_likelihood_position_model=9.74559	new_cov=25/0	polymorphism_quality=18.9	quality=18.9	quality_position_model=Inf	ref_cov=83/139	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=108/139
RA	316	.	NC_007779	1527466	0	T	A	bias_e_value=0.35085	bias_p_value=7.55112e-08	fisher_strand_p_value=3.69876e-09	frequency=9.022808e-02	genotype_quality=785.9	ks_quality_p_value=1	log10_base_likelihood=-21.9264	log10_qual_likelihood_position_model=23.8399	log10_strand_likelihood_position_model=8.43194	new_cov=0/24	polymorphism_quality=16.7	quality=16.7	quality_position_model=Inf	ref_cov=131/93	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=131/117
RA	317	.	NC_007779	1527474	0	G	A	bias_e_value=8.31429e-11	bias_p_value=1.78943e-17	fisher_strand_p_value=4.12969e-19	frequency=1.702800e-01	genotype_quality=729.8	ks_quality_p_value=1	log10_base_likelihood=-54.82	log10_qual_likelihood_position_model=40.2564	log10_strand_likelihood_position_model=18.3841	new_cov=0/49	polymorphism_quality=49.8	quality=49.8	quality_position_model=Inf	ref_cov=145/82	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=145/131
RA	318	.	NC_007779	1527479	0	C	A	bias_e_value=1.64281e-06	bias_p_value=3.53572e-13	fisher_strand_p_value=1.14271e-14	frequency=1.222363e-01	genotype_quality=911.4	ks_quality_p_value=0.932747	log10_base_likelihood=-36.3981	log10_qual_likelihood_position_model=44.4576	log10_strand_likelihood_position_model=13.9421	new_cov=0/38	polymorphism_quality=31.2	quality=31.2	quality_position_model=Inf	ref_cov=151/95	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=151/133
RA	319	.	NC_007779	1537499	0	A	G	bias_e_value=4.20281e-12	bias_p_value=9.04543e-19	fisher_strand_p_value=1.95013e-20	frequency=1.957569e-01	genotype_quality=523.3	ks_quality_p_value=1	log10_base_likelihood=-33.4321	log10_qual_likelihood_position_model=31.2356	log10_strand_likelihood_position_model=19.7099	new_cov=48/0	polymorphism_quality=28.3	quality=28.3	quality_position_model=Inf	ref_cov=51/116	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=99/116
RA	320	.	NC_007779	1552367	0	G	T	bias_e_value=0.00194561	bias_p_value=4.18742e-10	fisher_strand_p_value=1.62015e-11	frequency=6.988382e-02	genotype_quality=736.1	ks_quality_p_value=1	log10_base_likelihood=-6.69869	log10_qual_likelihood_position_model=20.0248	log10_strand_likelihood_position_model=10.7904	new_cov=0/24	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=129/59	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=129/83
RA	321	.	NC_007779	1552377	0	A	C	bias_e_value=4.06553e-13	bias_p_value=8.74999e-20	fisher_strand_p_value=1.79414e-21	frequency=1.333327e-01	genotype_quality=601.2	ks_quality_p_value=1	log10_base_likelihood=-14.9144	log10_qual_likelihood_position_model=32.2869	log10_strand_likelihood_position_model=20.7461	new_cov=0/40	polymorphism_quality=9.6	quality=9.6	quality_position_model=Inf	ref_cov=124/35	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=124/75
RA	322	.	NC_007779	1561891	0	T	A	bias_e_value=2978.82	bias_p_value=0.000641113	fisher_strand_p_value=5.97781e-05	frequency=5.112839e-02	genotype_quality=643.8	ks_quality_p_value=1	log10_base_likelihood=-6.51763	log10_qual_likelihood_position_model=13.0699	log10_strand_likelihood_position_model=4.22346	new_cov=0/11	polymorphism_quality=1.0	quality=1.0	quality_position_model=Inf	ref_cov=105/68	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=105/79
RA	323	.	NC_007779	1562465	0	T	G	bias_e_value=1.53263	bias_p_value=3.29858e-07	fisher_strand_p_value=1.74882e-08	frequency=7.076502e-02	genotype_quality=534.5	ks_quality_p_value=1	log10_base_likelihood=-8.69786	log10_qual_likelihood_position_model=15.7784	log10_strand_likelihood_position_model=7.75725	new_cov=18/0	polymorphism_quality=3.2	quality=3.2	quality_position_model=Inf	ref_cov=55/109	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=74/111
RA	324	.	NC_007779	1562518	0	A	C	bias_e_value=3.40474e-06	bias_p_value=7.32779e-13	fisher_strand_p_value=2.26022e-14	frequency=1.599593e-01	genotype_quality=336.9	ks_quality_p_value=1	log10_base_likelihood=-12.4078	log10_qual_likelihood_position_model=22.9455	log10_strand_likelihood_position_model=13.6458	new_cov=0/31	polymorphism_quality=7.0	quality=7.0	quality_position_model=Inf	ref_cov=75/28	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=75/59
RA	325	.	NC_007779	1564393	0	T	G	bias_e_value=0.00174528	bias_p_value=3.75626e-10	fisher_strand_p_value=1.447e-11	frequency=4.451180e-02	genotype_quality=812.1	ks_quality_p_value=1	log10_base_likelihood=-6.84286	log10_qual_likelihood_position_model=41.1969	log10_strand_likelihood_position_model=10.8395	new_cov=32/0	polymorphism_quality=1.3	quality=1.3	quality_position_model=Inf	ref_cov=100/137	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=133/137
RA	326	.	NC_007779	1564550	0	G	T	bias_e_value=5013.24	bias_p_value=0.00107897	fisher_strand_p_value=0.000106755	frequency=3.523445e-02	genotype_quality=687.7	ks_quality_p_value=0.995844	log10_base_likelihood=-5.84978	log10_qual_likelihood_position_model=12.7145	log10_strand_likelihood_position_model=3.97161	new_cov=8/0	polymorphism_quality=0.3	quality=0.3	quality_position_model=Inf	ref_cov=55/127	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=63/127
RA	327	.	NC_007779	1595838	1	.	C	bias_e_value=4483830	bias_p_value=0.965026	fisher_strand_p_value=1	frequency=1.321602e-02	genotype_quality=1093.0	ks_quality_p_value=0.747458	log10_base_likelihood=-12.6933	log10_qual_likelihood_position_model=1.90352	log10_strand_likelihood_position_model=0.386264	new_cov=2/1	polymorphism_quality=7.3	quality=7.3	quality_position_model=1.93803e-12	ref_cov=123/101	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=125/102
RA	328	.	NC_007779	1607869	0	A	.	bias_e_value=1601580	bias_p_value=0.344697	fisher_strand_p_value=0.247525	frequency=9.990692e-03	genotype_quality=1208.6	ks_quality_p_value=0.42968	log10_base_likelihood=-7.83781	log10_qual_likelihood_position_model=1.48299	log10_strand_likelihood_position_model=0.898754	new_cov=0/3	polymorphism_quality=2.3	quality=2.3	quality_position_model=2.3322e-07	ref_cov=149/148	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=149/151
RA	329	.	NC_007779	1615814	0	C	A	frequency=1	genotype_quality=985.9	new_cov=143/119	quality=985.9	ref_cov=0/0	tot_cov=143/119
RA	330	.	NC_007779	1626064	0	T	.	bias_e_value=1227230	bias_p_value=0.264128	fisher_strand_p_value=1	frequency=1.118565e-02	genotype_quality=1063.4	ks_quality_p_value=0.073025	log10_base_likelihood=-8.03285	log10_qual_likelihood_position_model=2.66689	log10_strand_likelihood_position_model=0.41796	new_cov=2/1	polymorphism_quality=2.5	quality=2.5	quality_position_model=7.86269e-07	ref_cov=134/131	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=136/132
RA	331	.	NC_007779	1628027	0	G	T	bias_e_value=0.00258121	bias_p_value=5.55538e-10	fisher_strand_p_value=2.19283e-11	frequency=2.732515e-01	genotype_quality=245.1	ks_quality_p_value=0.991489	log10_base_likelihood=-50.6881	log10_qual_likelihood_position_model=19.3837	log10_strand_likelihood_position_model=10.659	new_cov=25/0	polymorphism_quality=45.6	quality=45.6	quality_position_model=7.95886e-23	ref_cov=17/48	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=42/48
RA	332	.	NC_007779	1639432	1	.	T	bias_e_value=4577390	bias_p_value=0.985161	fisher_strand_p_value=1	frequency=1.063824e-02	genotype_quality=921.5	ks_quality_p_value=0.832748	log10_base_likelihood=-8.36469	log10_qual_likelihood_position_model=1.03545	log10_strand_likelihood_position_model=0.29891	new_cov=1/1	polymorphism_quality=2.9	quality=2.9	quality_position_model=5.51798e-09	ref_cov=95/91	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=96/92
RA	333	.	NC_007779	1641155	0	T	.	bias_e_value=4563810	bias_p_value=0.98224	fisher_strand_p_value=1	frequency=2.399158e-02	genotype_quality=978.3	ks_quality_p_value=0.81755	log10_base_likelihood=-17.9647	log10_qual_likelihood_position_model=2.92549	log10_strand_likelihood_position_model=0.501242	new_cov=3/3	polymorphism_quality=12.7	quality=12.7	quality_position_model=1.20954e-16	ref_cov=126/118	reject=INDEL_HOMOPOLYMER	tot_cov=129/121
RA	334	.	NC_007779	1642159	0	A	.	bias_e_value=2674120	bias_p_value=0.575534	fisher_strand_p_value=0.268576	frequency=9.245872e-03	genotype_quality=1305.9	ks_quality_p_value=0.875537	log10_base_likelihood=-7.3357	log10_qual_likelihood_position_model=2.48346	log10_strand_likelihood_position_model=0.705142	new_cov=3/0	polymorphism_quality=1.8	quality=1.8	quality_position_model=5.39257e-06	ref_cov=186/135	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=189/135
RA	335	.	NC_007779	1646737	0	T	A	bias_e_value=5719.15	bias_p_value=0.0012309	fisher_strand_p_value=0.000123054	frequency=3.684521e-02	genotype_quality=1058.5	ks_quality_p_value=1	log10_base_likelihood=-8.58057	log10_qual_likelihood_position_model=21.3907	log10_strand_likelihood_position_model=3.93007	new_cov=1/12	polymorphism_quality=3.1	quality=3.1	quality_position_model=Inf	ref_cov=177/110	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=178/122
RA	336	.	NC_007779	1646748	0	A	C	bias_e_value=4.38823e-06	bias_p_value=9.4445e-13	fisher_strand_p_value=2.93683e-14	frequency=4.891491e-02	genotype_quality=866.8	ks_quality_p_value=1	log10_base_likelihood=-8.58376	log10_qual_likelihood_position_model=26.4035	log10_strand_likelihood_position_model=13.5321	new_cov=0/32	polymorphism_quality=3.1	quality=3.1	quality_position_model=Inf	ref_cov=158/80	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=158/113
RA	337	.	NC_007779	1651004	1	.	G	bias_e_value=2590400	bias_p_value=0.557515	fisher_strand_p_value=0.235251	frequency=7.967949e-03	genotype_quality=1232.4	ks_quality_p_value=0.947598	log10_base_likelihood=-8.13896	log10_qual_likelihood_position_model=1.02824	log10_strand_likelihood_position_model=0.628469	new_cov=2/0	polymorphism_quality=2.7	quality=2.7	quality_position_model=2.0253e-08	ref_cov=120/129	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=122/129
RA	338	.	NC_007779	1651009	0	T	G	bias_e_value=1.34438e-09	bias_p_value=2.89342e-16	fisher_strand_p_value=7.14782e-18	frequency=1.175623e-01	genotype_quality=623.0	ks_quality_p_value=1	log10_base_likelihood=-27.0967	log10_qual_likelihood_position_model=27.0877	log10_strand_likelihood_position_model=17.1458	new_cov=26/0	polymorphism_quality=21.9	quality=21.9	quality_position_model=Inf	ref_cov=25/134	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=51/134
RA	339	.	NC_007779	1660545	0	G	T	bias_e_value=4938.6	bias_p_value=0.0010629	fisher_strand_p_value=0.000104612	frequency=4.096794e-02	genotype_quality=819.1	ks_quality_p_value=0.999471	log10_base_likelihood=-7.95184	log10_qual_likelihood_position_model=12.9642	log10_strand_likelihood_position_model=4.05892	new_cov=0/16	polymorphism_quality=2.5	quality=2.5	quality_position_model=Inf	ref_cov=109/129	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=109/146
RA	340	.	NC_007779	1669599	0	C	.	frequency=1	genotype_quality=1072.3	new_cov=109/109	quality=1072.3	ref_cov=0/0	tot_cov=109/109
RA	341	.	NC_007779	1671093	0	G	T	bias_e_value=9.52569	bias_p_value=2.05015e-06	fisher_strand_p_value=1.21121e-07	frequency=5.058861e-02	genotype_quality=985.7	ks_quality_p_value=1	log10_base_likelihood=-9.78041	log10_qual_likelihood_position_model=20.4175	log10_strand_likelihood_position_model=7.00263	new_cov=0/23	polymorphism_quality=4.3	quality=4.3	quality_position_model=Inf	ref_cov=143/129	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=143/153
RA	342	.	NC_007779	1681402	0	T	G	bias_e_value=8.62411e-08	bias_p_value=1.85611e-14	fisher_strand_p_value=5.12639e-16	frequency=8.687115e-02	genotype_quality=786.6	ks_quality_p_value=1	log10_base_likelihood=-24.3946	log10_qual_likelihood_position_model=28.7704	log10_strand_likelihood_position_model=15.2902	new_cov=27/0	polymorphism_quality=19.2	quality=19.2	quality_position_model=Inf	ref_cov=47/162	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=74/162
RA	343	.	NC_007779	1686463	0	A	C	bias_e_value=6.58977e-08	bias_p_value=1.41827e-14	fisher_strand_p_value=3.88742e-16	frequency=9.905434e-02	genotype_quality=620.8	ks_quality_p_value=1	log10_base_likelihood=-10.7587	log10_qual_likelihood_position_model=31.9533	log10_strand_likelihood_position_model=15.4103	new_cov=0/32	polymorphism_quality=5.3	quality=5.3	quality_position_model=Inf	ref_cov=123/45	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=123/77
RA	344	.	NC_007779	1700875	1	.	T	bias_e_value=4101620	bias_p_value=0.882766	fisher_strand_p_value=1	frequency=7.193565e-03	genotype_quality=1357.1	ks_quality_p_value=0.556684	log10_base_likelihood=-7.84798	log10_qual_likelihood_position_model=2.28883	log10_strand_likelihood_position_model=0.305258	new_cov=1/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=3.78074e-07	ref_cov=122/154	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=123/155
RA	345	.	NC_007779	1703335	0	G	C	bias_e_value=3.55036e-05	bias_p_value=7.6412e-12	fisher_strand_p_value=2.54976e-13	frequency=8.302164e-02	genotype_quality=684.0	ks_quality_p_value=0.998988	log10_base_likelihood=-24.9863	log10_qual_likelihood_position_model=16.6698	log10_strand_likelihood_position_model=12.5935	new_cov=16/0	polymorphism_quality=19.7	quality=19.7	quality_position_model=Inf	ref_cov=21/149	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=37/149
RA	346	.	NC_007779	1710558	0	C	G	bias_e_value=837.221	bias_p_value=0.00018019	fisher_strand_p_value=1.50084e-05	frequency=6.429815e-02	genotype_quality=882.2	ks_quality_p_value=0.990913	log10_base_likelihood=-14.6811	log10_qual_likelihood_position_model=23.8396	log10_strand_likelihood_position_model=4.95832	new_cov=3/19	polymorphism_quality=9.3	quality=9.3	quality_position_model=Inf	ref_cov=153/95	reject=FISHER_STRAND_P_VALUE	tot_cov=157/114
RA	347	.	NC_007779	1713510	0	A	C	bias_e_value=1.57493e-12	bias_p_value=3.38963e-19	fisher_strand_p_value=7.15312e-21	frequency=1.146579e-01	genotype_quality=732.4	ks_quality_p_value=1	log10_base_likelihood=-13.1363	log10_qual_likelihood_position_model=48.0297	log10_strand_likelihood_position_model=20.1455	new_cov=0/51	polymorphism_quality=7.8	quality=7.8	quality_position_model=Inf	ref_cov=140/70	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=140/121
RA	348	.	NC_007779	1732512	0	T	G	bias_e_value=7.53689e-08	bias_p_value=1.62212e-14	fisher_strand_p_value=4.46304e-16	frequency=9.829187e-02	genotype_quality=559.5	ks_quality_p_value=1	log10_base_likelihood=-7.30654	log10_qual_likelihood_position_model=24.8424	log10_strand_likelihood_position_model=15.3504	new_cov=32/0	polymorphism_quality=1.8	quality=1.8	quality_position_model=Inf	ref_cov=41/114	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=73/114
RA	349	.	NC_007779	1732516	0	T	G	bias_e_value=8.56698e-11	bias_p_value=1.84382e-17	fisher_strand_p_value=4.25821e-19	frequency=9.069586e-02	genotype_quality=528.7	ks_quality_p_value=1	log10_base_likelihood=-6.87136	log10_qual_likelihood_position_model=23.9773	log10_strand_likelihood_position_model=18.3708	new_cov=34/0	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=30/114	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=64/114
RA	350	.	NC_007779	1759412	0	T	.	bias_e_value=3878670	bias_p_value=0.834781	fisher_strand_p_value=0.626169	frequency=1.427460e-02	genotype_quality=1080.1	ks_quality_p_value=0.771978	log10_base_likelihood=-10.8029	log10_qual_likelihood_position_model=1.92886	log10_strand_likelihood_position_model=0.543744	new_cov=1/3	polymorphism_quality=5.4	quality=5.4	quality_position_model=2.55161e-10	ref_cov=129/147	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=130/150
RA	351	.	NC_007779	1763744	0	C	A	bias_e_value=8.63471	bias_p_value=1.85839e-06	fisher_strand_p_value=1.09119e-07	frequency=4.280281e-02	genotype_quality=935.9	ks_quality_p_value=1	log10_base_likelihood=-11.4036	log10_qual_likelihood_position_model=18.4577	log10_strand_likelihood_position_model=6.9621	new_cov=20/0	polymorphism_quality=6.0	quality=6.0	quality_position_model=Inf	ref_cov=115/154	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=135/154
RA	352	.	NC_007779	1766499	0	T	A	bias_e_value=2.59452	bias_p_value=5.58401e-07	fisher_strand_p_value=3.05048e-08	frequency=6.802845e-02	genotype_quality=610.5	ks_quality_p_value=1	log10_base_likelihood=-10.08	log10_qual_likelihood_position_model=15.1994	log10_strand_likelihood_position_model=7.51563	new_cov=0/13	polymorphism_quality=4.6	quality=4.6	quality_position_model=Inf	ref_cov=122/37	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=122/50
RA	353	.	NC_007779	1781198	0	T	.	bias_e_value=1168890	bias_p_value=0.251574	fisher_strand_p_value=0.250076	frequency=1.066685e-02	genotype_quality=1120.6	ks_quality_p_value=0.273067	log10_base_likelihood=-7.94301	log10_qual_likelihood_position_model=2.16628	log10_strand_likelihood_position_model=0.830703	new_cov=3/0	polymorphism_quality=2.5	quality=2.5	quality_position_model=7.89995e-07	ref_cov=146/132	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=149/132
RA	354	.	NC_007779	1784918	0	C	T	bias_e_value=2349480	bias_p_value=0.505663	fisher_strand_p_value=0.567139	frequency=1.270771e-02	genotype_quality=969.1	ks_quality_p_value=0.335146	log10_base_likelihood=-5.64734	log10_qual_likelihood_position_model=1.52331	log10_strand_likelihood_position_model=0.533539	new_cov=2/1	polymorphism_quality=0.1	quality=0.1	quality_position_model=2.07444e-05	ref_cov=93/139	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=95/140
RA	355	.	NC_007779	1801414	0	A	T	bias_e_value=6.34238	bias_p_value=1.36503e-06	fisher_strand_p_value=7.86379e-08	frequency=8.229971e-02	genotype_quality=882.7	ks_quality_p_value=1	log10_base_likelihood=-20.4172	log10_qual_likelihood_position_model=24.8027	log10_strand_likelihood_position_model=7.14019	new_cov=0/26	polymorphism_quality=15.1	quality=15.1	quality_position_model=Inf	ref_cov=121/124	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=121/150
RA	356	.	NC_007779	1801443	0	A	C	bias_e_value=8.32349e-17	bias_p_value=1.79141e-23	fisher_strand_p_value=3.11946e-25	frequency=1.576996e-01	genotype_quality=700.1	ks_quality_p_value=1	log10_base_likelihood=-16.363	log10_qual_likelihood_position_model=49.8413	log10_strand_likelihood_position_model=24.5059	new_cov=0/64	polymorphism_quality=11.0	quality=11.0	quality_position_model=Inf	ref_cov=130/62	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=130/126
RA	357	.	NC_007779	1801456	0	C	G	bias_e_value=0.0226388	bias_p_value=4.87239e-09	fisher_strand_p_value=2.19729e-10	frequency=1.066360e-01	genotype_quality=808.9	ks_quality_p_value=0.952205	log10_base_likelihood=-24.0661	log10_qual_likelihood_position_model=25.125	log10_strand_likelihood_position_model=9.74177	new_cov=0/33	polymorphism_quality=18.8	quality=18.8	quality_position_model=Inf	ref_cov=127/114	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=127/147
RA	358	.	NC_007779	1820099	0	A	C	bias_e_value=1.07493e-18	bias_p_value=2.3135e-25	fisher_strand_p_value=3.74047e-27	frequency=1.758900e-01	genotype_quality=714.9	ks_quality_p_value=1	log10_base_likelihood=-49.541	log10_qual_likelihood_position_model=39.9121	log10_strand_likelihood_position_model=26.4271	new_cov=0/50	polymorphism_quality=44.5	quality=44.5	quality_position_model=Inf	ref_cov=158/43	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=158/94
RA	359	.	NC_007779	1837206	0	G	T	bias_e_value=0.00545708	bias_p_value=1.17449e-09	fisher_strand_p_value=4.8127e-11	frequency=7.635450e-02	genotype_quality=735.9	ks_quality_p_value=0.98514	log10_base_likelihood=-16.7093	log10_qual_likelihood_position_model=23.5033	log10_strand_likelihood_position_model=10.3176	new_cov=20/0	polymorphism_quality=11.4	quality=11.4	quality_position_model=Inf	ref_cov=53/144	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=73/145
RA	360	.	NC_007779	1844073	0	G	A	frequency=1	genotype_quality=1089.2	new_cov=135/139	quality=1089.2	ref_cov=1/0	tot_cov=136/139
RA	361	.	NC_007779	1844628	0	A	G	bias_e_value=0.646804	bias_p_value=1.39207e-07	fisher_strand_p_value=7.0408e-09	frequency=4.204655e-02	genotype_quality=594.7	ks_quality_p_value=1	log10_base_likelihood=-12.225	log10_qual_likelihood_position_model=9.51183	log10_strand_likelihood_position_model=8.15238	new_cov=7/0	polymorphism_quality=6.8	quality=6.8	quality_position_model=Inf	ref_cov=7/147	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=14/147
RA	362	.	NC_007779	1846634	0	A	.	bias_e_value=4271790	bias_p_value=0.919391	fisher_strand_p_value=0.634797	frequency=1.474667e-02	genotype_quality=1094.7	ks_quality_p_value=0.986711	log10_base_likelihood=-10.5333	log10_qual_likelihood_position_model=4.39595	log10_strand_likelihood_position_model=0.502766	new_cov=3/1	polymorphism_quality=5.1	quality=5.1	quality_position_model=1.52307e-07	ref_cov=150/117	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=153/118
RA	363	.	NC_007779	1847798	0	A	.	bias_e_value=4631060	bias_p_value=0.996713	fisher_strand_p_value=1	frequency=1.093578e-02	genotype_quality=1099.4	ks_quality_p_value=0.920026	log10_base_likelihood=-7.53593	log10_qual_likelihood_position_model=3.01433	log10_strand_likelihood_position_model=0.402291	new_cov=2/1	polymorphism_quality=2.0	quality=2.0	quality_position_model=5.76675e-06	ref_cov=142/128	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=145/129
RA	364	.	NC_007779	1879404	0	A	C	bias_e_value=2.03518e-19	bias_p_value=4.38019e-26	fisher_strand_p_value=6.89339e-28	frequency=1.324620e-01	genotype_quality=741.8	ks_quality_p_value=1	log10_base_likelihood=-35.3452	log10_qual_likelihood_position_model=40.4304	log10_strand_likelihood_position_model=27.1616	new_cov=0/37	polymorphism_quality=30.2	quality=30.2	quality_position_model=Inf	ref_cov=169/21	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=169/59
RA	365	.	NC_007779	1879996	0	G	T	bias_e_value=202.771	bias_p_value=4.36412e-05	fisher_strand_p_value=3.19634e-06	frequency=4.354382e-02	genotype_quality=863.6	ks_quality_p_value=1	log10_base_likelihood=-7.36941	log10_qual_likelihood_position_model=11.3167	log10_strand_likelihood_position_model=5.49535	new_cov=12/0	polymorphism_quality=1.9	quality=1.9	quality_position_model=Inf	ref_cov=77/156	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=89/156
RA	366	.	NC_007779	1889729	1	.	A	bias_e_value=4514470	bias_p_value=0.971621	fisher_strand_p_value=1	frequency=1.034451e-02	genotype_quality=1404.0	ks_quality_p_value=0.77142	log10_base_likelihood=-12.5	log10_qual_likelihood_position_model=1.41946	log10_strand_likelihood_position_model=0.376329	new_cov=2/1	polymorphism_quality=7.1	quality=7.1	quality_position_model=9.56563e-13	ref_cov=163/124	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=165/125
RA	367	.	NC_007779	1906475	1	.	C	bias_e_value=1348330	bias_p_value=0.290192	fisher_strand_p_value=0.197354	frequency=7.066727e-03	genotype_quality=1360.3	ks_quality_p_value=0.421811	log10_base_likelihood=-8.26611	log10_qual_likelihood_position_model=1.38273	log10_strand_likelihood_position_model=0.704755	new_cov=2/0	polymorphism_quality=2.8	quality=2.8	quality_position_model=4.16796e-08	ref_cov=124/157	reject=POLYMORPHISM_STRAND	tot_cov=126/157
RA	368	.	NC_007779	1906477	1	.	G	bias_e_value=11601.5	bias_p_value=0.00249691	fisher_strand_p_value=0.000271089	frequency=3.557301e-02	genotype_quality=1146.5	ks_quality_p_value=0.999708	log10_base_likelihood=-39.4864	log10_qual_likelihood_position_model=9.15169	log10_strand_likelihood_position_model=3.56689	new_cov=9/0	polymorphism_quality=34.3	quality=34.3	quality_position_model=5.28466e-29	ref_cov=95/149	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,INDEL_HOMOPOLYMER	tot_cov=104/149
RA	369	.	NC_007779	1906482	0	C	G	bias_e_value=6.04873	bias_p_value=1.30183e-06	fisher_strand_p_value=7.47804e-08	frequency=3.771496e-02	genotype_quality=895.5	ks_quality_p_value=1	log10_base_likelihood=-6.06871	log10_qual_likelihood_position_model=16.2492	log10_strand_likelihood_position_model=7.12621	new_cov=16/0	polymorphism_quality=0.5	quality=0.5	quality_position_model=Inf	ref_cov=80/158	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=96/158
RA	370	.	NC_007779	1906488	0	G	T	bias_e_value=0.172626	bias_p_value=3.71531e-08	fisher_strand_p_value=1.75579e-09	frequency=8.204412e-02	genotype_quality=861.4	ks_quality_p_value=1	log10_base_likelihood=-18.6332	log10_qual_likelihood_position_model=23.3979	log10_strand_likelihood_position_model=8.76431	new_cov=22/1	polymorphism_quality=13.3	quality=13.3	quality_position_model=Inf	ref_cov=70/148	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=92/149
RA	371	.	NC_007779	1913464	0	T	G	bias_e_value=9.7689e-07	bias_p_value=2.1025e-13	fisher_strand_p_value=6.23734e-15	frequency=7.085371e-02	genotype_quality=693.2	ks_quality_p_value=1	log10_base_likelihood=-7.17148	log10_qual_likelihood_position_model=28.6892	log10_strand_likelihood_position_model=14.2271	new_cov=43/0	polymorphism_quality=1.7	quality=1.7	quality_position_model=Inf	ref_cov=85/121	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=129/121
RA	372	.	NC_007779	1918872	0	T	A	frequency=1	genotype_quality=1152.9	new_cov=155/148	quality=1152.9	ref_cov=0/1	tot_cov=155/149
RA	373	.	NC_007779	1956118	0	C	A	bias_e_value=1206.34	bias_p_value=0.000259633	fisher_strand_p_value=2.45056e-05	frequency=3.286362e-02	genotype_quality=605.1	ks_quality_p_value=0.904206	log10_base_likelihood=-12.6722	log10_qual_likelihood_position_model=5.76775	log10_strand_likelihood_position_model=4.61073	new_cov=0/5	polymorphism_quality=7.3	quality=7.3	quality_position_model=0.000501371	ref_cov=132/15	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=132/20
RA	374	.	NC_007779	1971508	0	A	C	bias_e_value=1.45289e-07	bias_p_value=3.12696e-14	fisher_strand_p_value=8.76623e-16	frequency=9.240580e-02	genotype_quality=530.9	ks_quality_p_value=1	log10_base_likelihood=-18.1605	log10_qual_likelihood_position_model=17.4894	log10_strand_likelihood_position_model=15.0572	new_cov=0/17	polymorphism_quality=12.9	quality=12.9	quality_position_model=Inf	ref_cov=129/11	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=129/28
RA	375	.	NC_007779	1973476	0	G	A	frequency=1	genotype_quality=1057.7	new_cov=144/127	quality=1057.7	ref_cov=0/0	tot_cov=144/127
RA	376	.	NC_007779	1978921	1	.	A	bias_e_value=4514790	bias_p_value=0.97169	fisher_strand_p_value=1	frequency=7.246017e-03	genotype_quality=1338.8	ks_quality_p_value=0.771686	log10_base_likelihood=-7.45287	log10_qual_likelihood_position_model=2.47884	log10_strand_likelihood_position_model=0.299659	new_cov=1/1	polymorphism_quality=2.0	quality=2.0	quality_position_model=1.51576e-06	ref_cov=140/134	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=141/135
RA	377	.	NC_007779	1993894	0	A	C	bias_e_value=3.48432	bias_p_value=7.49908e-07	fisher_strand_p_value=4.1677e-08	frequency=6.570339e-02	genotype_quality=955.4	ks_quality_p_value=1	log10_base_likelihood=-17.5061	log10_qual_likelihood_position_model=25.0266	log10_strand_likelihood_position_model=7.41363	new_cov=0/27	polymorphism_quality=12.2	quality=12.2	quality_position_model=Inf	ref_cov=132/136	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=132/165
RA	378	.	NC_007779	1999251	0	T	G	bias_e_value=0.0544506	bias_p_value=1.1719e-08	fisher_strand_p_value=5.23879e-10	frequency=8.169603e-02	genotype_quality=547.4	ks_quality_p_value=1	log10_base_likelihood=-8.0058	log10_qual_likelihood_position_model=22.705	log10_strand_likelihood_position_model=9.28077	new_cov=27/0	polymorphism_quality=2.5	quality=2.5	quality_position_model=Inf	ref_cov=62/91	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=89/91
RA	379	.	NC_007779	2002117	1	.	T	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=7.720947e-03	genotype_quality=1271.6	ks_quality_p_value=0.99994	log10_base_likelihood=-7.40375	log10_qual_likelihood_position_model=2.39035	log10_strand_likelihood_position_model=0.303415	new_cov=1/1	polymorphism_quality=1.9	quality=1.9	quality_position_model=1.39153e-06	ref_cov=116/141	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=117/142
RA	380	.	NC_007779	2004055	0	A	C	bias_e_value=4.6255e-40	bias_p_value=9.95517e-47	fisher_strand_p_value=8.91731e-49	frequency=3.217483e-01	genotype_quality=584.0	ks_quality_p_value=1	log10_base_likelihood=-96.4643	log10_qual_likelihood_position_model=68.5244	log10_strand_likelihood_position_model=48.0629	new_cov=0/114	polymorphism_quality=91.5	quality=91.5	quality_position_model=Inf	ref_cov=148/41	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=148/157
RA	381	.	NC_007779	2005401	0	C	T	frequency=1	genotype_quality=1250.0	new_cov=156/151	quality=1250.0	ref_cov=0/0	tot_cov=156/151
RA	382	.	NC_007779	2014007	1	.	T	bias_e_value=4470700	bias_p_value=0.962201	fisher_strand_p_value=1	frequency=7.041931e-03	genotype_quality=1397.4	ks_quality_p_value=0.73796	log10_base_likelihood=-7.6678	log10_qual_likelihood_position_model=2.32077	log10_strand_likelihood_position_model=0.305047	new_cov=1/1	polymorphism_quality=2.2	quality=2.2	quality_position_model=6.27769e-07	ref_cov=125/157	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=126/158
RA	383	.	NC_007779	2027367	0	T	C	bias_e_value=273.758	bias_p_value=5.89192e-05	fisher_strand_p_value=4.42027e-06	frequency=4.051781e-02	genotype_quality=1009.7	ks_quality_p_value=1	log10_base_likelihood=-7.16435	log10_qual_likelihood_position_model=21.2797	log10_strand_likelihood_position_model=5.35455	new_cov=0/17	polymorphism_quality=1.7	quality=1.7	quality_position_model=Inf	ref_cov=149/131	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=149/150
RA	384	.	NC_007779	2050720	0	G	T	bias_e_value=139.159	bias_p_value=2.99502e-05	fisher_strand_p_value=2.13028e-06	frequency=3.328896e-02	genotype_quality=1009.7	ks_quality_p_value=1	log10_base_likelihood=-5.91141	log10_qual_likelihood_position_model=15.311	log10_strand_likelihood_position_model=5.89426	new_cov=0/19	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=150/134	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=150/153
RA	385	.	NC_007779	2060392	0	T	G	bias_e_value=1.32494e-08	bias_p_value=2.85159e-15	fisher_strand_p_value=7.47823e-17	frequency=8.982706e-02	genotype_quality=770.7	ks_quality_p_value=1	log10_base_likelihood=-13.13	log10_qual_likelihood_position_model=50.9216	log10_strand_likelihood_position_model=16.2484	new_cov=54/0	polymorphism_quality=7.8	quality=7.8	quality_position_model=Inf	ref_cov=102/128	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=156/128
RA	386	.	NC_007779	2065611	0	C	A	bias_e_value=1153.5	bias_p_value=0.00024826	fisher_strand_p_value=2.10992e-05	frequency=3.212261e-02	genotype_quality=1001.9	ks_quality_p_value=1	log10_base_likelihood=-7.64492	log10_qual_likelihood_position_model=16.3652	log10_strand_likelihood_position_model=4.89208	new_cov=18/0	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=147/136	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=165/136
RA	387	.	NC_007779	2076214	0	A	C	bias_e_value=0.184896	bias_p_value=3.9794e-08	fisher_strand_p_value=1.88702e-09	frequency=5.657196e-02	genotype_quality=595.8	ks_quality_p_value=1	log10_base_likelihood=-6.43945	log10_qual_likelihood_position_model=16.7285	log10_strand_likelihood_position_model=8.72422	new_cov=0/21	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=110/58	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=110/79
RA	388	.	NC_007779	2082881	0	A	.	bias_e_value=3796510	bias_p_value=0.817098	fisher_strand_p_value=0.621053	frequency=1.047516e-02	genotype_quality=1153.9	ks_quality_p_value=0.740459	log10_base_likelihood=-7.29469	log10_qual_likelihood_position_model=5.20617	log10_strand_likelihood_position_model=0.427538	new_cov=2/1	polymorphism_quality=1.8	quality=1.8	quality_position_model=0.00247383	ref_cov=140/143	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=142/144
RA	389	.	NC_007779	2089543	0	A	C	bias_e_value=0.000194581	bias_p_value=4.18784e-11	fisher_strand_p_value=1.48311e-12	frequency=6.283140e-02	genotype_quality=916.6	ks_quality_p_value=1	log10_base_likelihood=-8.93098	log10_qual_likelihood_position_model=27.3501	log10_strand_likelihood_position_model=11.8288	new_cov=0/27	polymorphism_quality=3.5	quality=3.5	quality_position_model=Inf	ref_cov=170/84	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=170/111
RA	390	.	NC_007779	2095582	0	G	T	bias_e_value=2228.21	bias_p_value=0.000479564	fisher_strand_p_value=4.344e-05	frequency=3.330803e-02	genotype_quality=885.4	ks_quality_p_value=0.999557	log10_base_likelihood=-5.74787	log10_qual_likelihood_position_model=11.7901	log10_strand_likelihood_position_model=4.38188	new_cov=0/16	polymorphism_quality=0.2	quality=0.2	quality_position_model=Inf	ref_cov=126/135	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=126/154
RA	391	.	NC_007779	2098223	0	T	G	bias_e_value=5.13765e-10	bias_p_value=1.10574e-16	fisher_strand_p_value=2.66665e-18	frequency=1.297541e-01	genotype_quality=570.6	ks_quality_p_value=1	log10_base_likelihood=-14.7706	log10_qual_likelihood_position_model=30.3615	log10_strand_likelihood_position_model=17.574	new_cov=39/0	polymorphism_quality=9.4	quality=9.4	quality_position_model=Inf	ref_cov=45/116	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=84/116
RA	392	.	NC_007779	2107010	1	.	A	bias_e_value=2088720	bias_p_value=0.449543	fisher_strand_p_value=1	frequency=1.365185e-02	genotype_quality=1397.4	ks_quality_p_value=0.158004	log10_base_likelihood=-17.1439	log10_qual_likelihood_position_model=2.39655	log10_strand_likelihood_position_model=0.449899	new_cov=2/2	polymorphism_quality=11.8	quality=11.8	quality_position_model=2.12157e-16	ref_cov=170/119	reject=INDEL_HOMOPOLYMER	tot_cov=172/121
RA	393	.	NC_007779	2141731	0	A	C	bias_e_value=71.0346	bias_p_value=1.52883e-05	fisher_strand_p_value=1.03427e-06	frequency=3.362465e-02	genotype_quality=762.0	ks_quality_p_value=1	log10_base_likelihood=-5.68137	log10_qual_likelihood_position_model=22.6598	log10_strand_likelihood_position_model=5.98537	new_cov=0/18	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=120/95	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=120/114
RA	394	.	NC_007779	2170094	0	C	A	frequency=1	genotype_quality=1143.1	new_cov=132/149	quality=1143.1	ref_cov=0/0	tot_cov=132/149
RA	395	.	NC_007779	2174678	0	C	G	bias_e_value=3.23895e-25	bias_p_value=6.97098e-32	fisher_strand_p_value=9.06285e-34	frequency=1.944008e-01	genotype_quality=705.5	ks_quality_p_value=0.997824	log10_base_likelihood=-75.9105	log10_qual_likelihood_position_model=42.2219	log10_strand_likelihood_position_model=33.0427	new_cov=0/45	polymorphism_quality=70.9	quality=70.9	quality_position_model=0.0383882	ref_cov=165/17	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=165/62
RA	396	.	NC_007779	2184751	0	T	G	bias_e_value=3.89805	bias_p_value=8.38953e-07	fisher_strand_p_value=4.69358e-08	frequency=6.927776e-02	genotype_quality=857.9	ks_quality_p_value=1	log10_base_likelihood=-12.9417	log10_qual_likelihood_position_model=23.1662	log10_strand_likelihood_position_model=7.55851	new_cov=25/1	polymorphism_quality=7.6	quality=7.6	quality_position_model=Inf	ref_cov=103/142	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=128/143
RA	397	.	NC_007779	2199432	0	G	C	bias_e_value=2.01236e-11	bias_p_value=4.33107e-18	fisher_strand_p_value=9.67133e-20	frequency=1.196146e-01	genotype_quality=713.6	ks_quality_p_value=1	log10_base_likelihood=-46.9028	log10_qual_likelihood_position_model=21.4558	log10_strand_likelihood_position_model=19.016	new_cov=1/23	polymorphism_quality=41.8	quality=41.8	quality_position_model=2.28754e-08	ref_cov=159/13	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=160/36
RA	398	.	NC_007779	2211749	0	G	C	bias_e_value=0.000153997	bias_p_value=3.31439e-11	fisher_strand_p_value=1.16473e-12	frequency=7.257795e-02	genotype_quality=782.3	ks_quality_p_value=0.999186	log10_base_likelihood=-20.5733	log10_qual_likelihood_position_model=22.2203	log10_strand_likelihood_position_model=11.9338	new_cov=17/0	polymorphism_quality=15.3	quality=15.3	quality_position_model=Inf	ref_cov=32/164	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=49/164
RA	399	.	NC_007779	2212417	0	G	T	bias_e_value=0.000100336	bias_p_value=2.15947e-11	fisher_strand_p_value=7.46622e-13	frequency=6.304026e-02	genotype_quality=591.5	ks_quality_p_value=1	log10_base_likelihood=-18.8509	log10_qual_likelihood_position_model=12.5041	log10_strand_likelihood_position_model=12.1269	new_cov=10/0	polymorphism_quality=13.6	quality=13.6	quality_position_model=Inf	ref_cov=4/138	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=14/138
RA	400	.	NC_007779	2213136	0	G	T	bias_e_value=7.58228e-07	bias_p_value=1.63189e-13	fisher_strand_p_value=5.04893e-15	frequency=1.799655e-01	genotype_quality=458.1	ks_quality_p_value=0.951488	log10_base_likelihood=-62.582	log10_qual_likelihood_position_model=22.0839	log10_strand_likelihood_position_model=14.2968	new_cov=26/0	polymorphism_quality=57.5	quality=57.5	quality_position_model=1.9684e-28	ref_cov=24/93	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=50/93
RA	401	.	NC_007779	2217590	0	C	T	bias_e_value=4643210	bias_p_value=0.999329	fisher_strand_p_value=1	frequency=1.515293e-02	genotype_quality=1042.3	ks_quality_p_value=0.963584	log10_base_likelihood=-5.92607	log10_qual_likelihood_position_model=4.26397	log10_strand_likelihood_position_model=0.43873	new_cov=2/2	polymorphism_quality=0.4	quality=0.4	quality_position_model=0.00771919	ref_cov=145/110	reject=EVALUE	tot_cov=147/112
RA	402	.	NC_007779	2226744	0	T	G	bias_e_value=4.27588e-09	bias_p_value=9.2027e-16	fisher_strand_p_value=2.34208e-17	frequency=1.327758e-01	genotype_quality=796.3	ks_quality_p_value=1	log10_base_likelihood=-23.2074	log10_qual_likelihood_position_model=37.1776	log10_strand_likelihood_position_model=16.6304	new_cov=47/0	polymorphism_quality=18.0	quality=18.0	quality_position_model=Inf	ref_cov=90/142	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=137/142
RA	403	.	NC_007779	2227297	1	.	C	bias_e_value=2242420	bias_p_value=0.482621	fisher_strand_p_value=0.187136	frequency=8.031845e-03	genotype_quality=1208.9	ks_quality_p_value=0.943146	log10_base_likelihood=-8.03458	log10_qual_likelihood_position_model=3.48962	log10_strand_likelihood_position_model=0.727843	new_cov=2/0	polymorphism_quality=2.6	quality=2.6	quality_position_model=1.19733e-05	ref_cov=106/141	reject=POLYMORPHISM_STRAND	tot_cov=108/141
RA	404	.	NC_007779	2227306	0	A	C	bias_e_value=1348.69	bias_p_value=0.00029027	fisher_strand_p_value=2.50335e-05	frequency=2.551079e-02	genotype_quality=996.1	ks_quality_p_value=1	log10_base_likelihood=-5.80178	log10_qual_likelihood_position_model=15.301	log10_strand_likelihood_position_model=4.60148	new_cov=12/0	polymorphism_quality=0.2	quality=0.2	quality_position_model=Inf	ref_cov=105/158	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=117/159
RA	405	.	NC_007779	2245262	0	G	C	bias_e_value=7.43263e-06	bias_p_value=1.59968e-12	fisher_strand_p_value=5.05989e-14	frequency=1.046047e-01	genotype_quality=585.8	ks_quality_p_value=1	log10_base_likelihood=-17.5533	log10_qual_likelihood_position_model=16.9974	log10_strand_likelihood_position_model=13.2959	new_cov=0/19	polymorphism_quality=12.2	quality=12.2	quality_position_model=Inf	ref_cov=126/22	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=126/41
RA	406	.	NC_007779	2249963	0	T	G	bias_e_value=1.49075e-15	bias_p_value=3.20844e-22	fisher_strand_p_value=5.88823e-24	frequency=2.170911e-01	genotype_quality=585.9	ks_quality_p_value=1	log10_base_likelihood=-43.234	log10_qual_likelihood_position_model=48.0074	log10_strand_likelihood_position_model=23.23	new_cov=61/0	polymorphism_quality=38.1	quality=38.1	quality_position_model=Inf	ref_cov=55/117	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=117/117
RA	407	.	NC_007779	2261910	0	A	C	bias_e_value=32.3375	bias_p_value=6.9598e-06	fisher_strand_p_value=4.4545e-07	frequency=4.528332e-02	genotype_quality=743.5	ks_quality_p_value=1	log10_base_likelihood=-6.31428	log10_qual_likelihood_position_model=16.5708	log10_strand_likelihood_position_model=6.3512	new_cov=0/16	polymorphism_quality=0.8	quality=0.8	quality_position_model=Inf	ref_cov=129/78	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=129/94
RA	408	.	NC_007779	2262756	0	A	C	bias_e_value=2629160	bias_p_value=0.565857	fisher_strand_p_value=1	frequency=2.919006e-02	genotype_quality=1075.5	ks_quality_p_value=0.228527	log10_base_likelihood=-25.8939	log10_qual_likelihood_position_model=3.04256	log10_strand_likelihood_position_model=0.558934	new_cov=5/3	polymorphism_quality=20.7	quality=20.7	quality_position_model=1.72777e-24	ref_cov=154/112	tot_cov=159/115
RA	409	.	NC_007779	2264335	0	A	C	bias_e_value=3.4351e-07	bias_p_value=7.39314e-14	fisher_strand_p_value=2.12539e-15	frequency=7.641125e-02	genotype_quality=701.2	ks_quality_p_value=1	log10_base_likelihood=-11.56	log10_qual_likelihood_position_model=27.5449	log10_strand_likelihood_position_model=14.6726	new_cov=0/30	polymorphism_quality=6.2	quality=6.2	quality_position_model=Inf	ref_cov=137/51	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=137/82
RA	410	.	NC_007779	2264339	0	A	C	bias_e_value=8.22639e-05	bias_p_value=1.77051e-11	fisher_strand_p_value=6.0782e-13	frequency=1.111302e-01	genotype_quality=704.4	ks_quality_p_value=1	log10_base_likelihood=-15.8715	log10_qual_likelihood_position_model=29.015	log10_strand_likelihood_position_model=12.2226	new_cov=1/32	polymorphism_quality=10.5	quality=10.5	quality_position_model=Inf	ref_cov=131/64	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=132/97
RA	411	.	NC_007779	2284038	0	A	C	bias_e_value=0.000241853	bias_p_value=5.20525e-11	fisher_strand_p_value=1.85826e-12	frequency=4.709005e-02	genotype_quality=842.6	ks_quality_p_value=1	log10_base_likelihood=-8.3952	log10_qual_likelihood_position_model=26.6478	log10_strand_likelihood_position_model=11.7309	new_cov=0/31	polymorphism_quality=2.9	quality=2.9	quality_position_model=Inf	ref_cov=148/91	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=148/123
RA	412	.	NC_007779	2287114	0	C	A	bias_e_value=7.59435e-05	bias_p_value=1.63448e-11	fisher_strand_p_value=7.71425e-13	frequency=1.082120e-01	genotype_quality=914.1	ks_quality_p_value=0.725321	log10_base_likelihood=-38.1655	log10_qual_likelihood_position_model=39.529	log10_strand_likelihood_position_model=12.1127	new_cov=0/34	polymorphism_quality=33.0	quality=33.0	quality_position_model=Inf	ref_cov=155/105	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=155/139
RA	413	.	NC_007779	2306988	1	.	G	bias_e_value=351101	bias_p_value=0.0755653	fisher_strand_p_value=0.0180136	frequency=1.408482e-02	genotype_quality=1385.4	ks_quality_p_value=0.800728	log10_base_likelihood=-17.7085	log10_qual_likelihood_position_model=2.59323	log10_strand_likelihood_position_model=1.7444	new_cov=4/0	polymorphism_quality=12.4	quality=12.4	quality_position_model=1.85084e-15	ref_cov=101/179	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=105/179
RA	414	.	NC_007779	2307309	0	T	C	bias_e_value=9.3579e-10	bias_p_value=2.01404e-16	fisher_strand_p_value=4.99643e-18	frequency=1.175394e-01	genotype_quality=565.2	ks_quality_p_value=0.986742	log10_base_likelihood=-34.127	log10_qual_likelihood_position_model=19.7921	log10_strand_likelihood_position_model=17.3013	new_cov=0/23	polymorphism_quality=29.0	quality=29.0	quality_position_model=Inf	ref_cov=145/20	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=145/43
RA	415	.	NC_007779	2316502	1	.	T	bias_e_value=4644640	bias_p_value=0.999635	fisher_strand_p_value=1	frequency=6.328583e-03	genotype_quality=1553.9	ks_quality_p_value=0.973116	log10_base_likelihood=-7.89663	log10_qual_likelihood_position_model=1.93655	log10_strand_likelihood_position_model=0.30471	new_cov=1/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=1.44938e-07	ref_cov=174/140	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=175/141
RA	416	.	NC_007779	2331120	0	T	G	bias_e_value=3.00235e-23	bias_p_value=6.46177e-30	fisher_strand_p_value=8.91338e-32	frequency=2.019167e-01	genotype_quality=684.2	ks_quality_p_value=1	log10_base_likelihood=-48.801	log10_qual_likelihood_position_model=46.8808	log10_strand_likelihood_position_model=31.05	new_cov=71/0	polymorphism_quality=43.7	quality=43.7	quality_position_model=Inf	ref_cov=52/147	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=124/147
RA	417	.	NC_007779	2332580	0	A	C	bias_e_value=4.71335e-14	bias_p_value=1.01442e-20	fisher_strand_p_value=1.99029e-22	frequency=1.028137e-01	genotype_quality=729.6	ks_quality_p_value=1	log10_base_likelihood=-14.14	log10_qual_likelihood_position_model=29.6697	log10_strand_likelihood_position_model=21.7011	new_cov=0/42	polymorphism_quality=8.8	quality=8.8	quality_position_model=Inf	ref_cov=151/46	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=151/89
RA	418	.	NC_007779	2334630	0	C	A	bias_e_value=588.042	bias_p_value=0.000126561	fisher_strand_p_value=1.01244e-05	frequency=3.852844e-02	genotype_quality=918.4	ks_quality_p_value=1	log10_base_likelihood=-6.29114	log10_qual_likelihood_position_model=15.147	log10_strand_likelihood_position_model=5.18727	new_cov=19/0	polymorphism_quality=0.8	quality=0.8	quality_position_model=Inf	ref_cov=141/132	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=161/132
RA	419	.	NC_007779	2337256	0	G	C	bias_e_value=4.50976	bias_p_value=9.70607e-07	fisher_strand_p_value=5.4804e-08	frequency=3.576088e-02	genotype_quality=635.9	ks_quality_p_value=0.999463	log10_base_likelihood=-5.59245	log10_qual_likelihood_position_model=10.1107	log10_strand_likelihood_position_model=7.26119	new_cov=7/0	polymorphism_quality=0.0	quality=0.0	quality_position_model=Inf	ref_cov=11/147	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=18/147
RA	420	.	NC_007779	2342393	0	A	C	bias_e_value=1.21001e-13	bias_p_value=2.60422e-20	fisher_strand_p_value=5.20773e-22	frequency=1.516848e-01	genotype_quality=639.8	ks_quality_p_value=1	log10_base_likelihood=-16.4543	log10_qual_likelihood_position_model=36.802	log10_strand_likelihood_position_model=21.2834	new_cov=0/47	polymorphism_quality=11.1	quality=11.1	quality_position_model=Inf	ref_cov=129/48	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=129/96
RA	421	.	NC_007779	2344586	0	C	A	bias_e_value=22046.4	bias_p_value=0.0047449	fisher_strand_p_value=0.000558913	frequency=3.168392e-02	genotype_quality=908.7	ks_quality_p_value=1	log10_base_likelihood=-7.14043	log10_qual_likelihood_position_model=13.171	log10_strand_likelihood_position_model=3.30664	new_cov=12/0	polymorphism_quality=1.6	quality=1.6	quality_position_model=Inf	ref_cov=129/120	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=141/120
RA	422	.	NC_007779	2347976	0	A	C	bias_e_value=4.0869e-23	bias_p_value=8.79597e-30	fisher_strand_p_value=1.21857e-31	frequency=1.668591e-01	genotype_quality=670.7	ks_quality_p_value=1	log10_base_likelihood=-26.8512	log10_qual_likelihood_position_model=41.2513	log10_strand_likelihood_position_model=30.9141	new_cov=0/59	polymorphism_quality=21.6	quality=21.6	quality_position_model=Inf	ref_cov=150/37	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=150/97
RA	423	.	NC_007779	2348480	0	G	T	bias_e_value=0.252539	bias_p_value=5.43523e-08	fisher_strand_p_value=2.61802e-09	frequency=3.580761e-02	genotype_quality=1094.1	ks_quality_p_value=1	log10_base_likelihood=-5.72496	log10_qual_likelihood_position_model=21.2536	log10_strand_likelihood_position_model=8.58203	new_cov=0/16	polymorphism_quality=0.2	quality=0.2	quality_position_model=Inf	ref_cov=191/70	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=191/86
RA	424	.	NC_007779	2354264	0	A	C	bias_e_value=6.65956e-10	bias_p_value=1.43329e-16	fisher_strand_p_value=3.47888e-18	frequency=4.897738e-02	genotype_quality=994.2	ks_quality_p_value=1	log10_base_likelihood=-6.13977	log10_qual_likelihood_position_model=49.7056	log10_strand_likelihood_position_model=17.4586	new_cov=0/43	polymorphism_quality=0.6	quality=0.6	quality_position_model=Inf	ref_cov=178/94	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=178/138
RA	425	.	NC_007779	2354291	0	A	C	bias_e_value=8.04052e-20	bias_p_value=1.73051e-26	fisher_strand_p_value=2.68357e-28	frequency=1.975346e-01	genotype_quality=776.4	ks_quality_p_value=1	log10_base_likelihood=-53.9833	log10_qual_likelihood_position_model=46.2611	log10_strand_likelihood_position_model=27.5713	new_cov=0/68	polymorphism_quality=48.9	quality=48.9	quality_position_model=Inf	ref_cov=162/73	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=162/141
RA	426	.	NC_007779	2359163	0	T	C	bias_e_value=0.0953104	bias_p_value=2.0513e-08	fisher_strand_p_value=9.41684e-10	frequency=6.368494e-02	genotype_quality=679.2	ks_quality_p_value=1	log10_base_likelihood=-6.62988	log10_qual_likelihood_position_model=28.0618	log10_strand_likelihood_position_model=9.02609	new_cov=0/21	polymorphism_quality=1.1	quality=1.1	quality_position_model=Inf	ref_cov=133/68	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=133/89
RA	427	.	NC_007779	2362369	0	C	A	bias_e_value=19873.3	bias_p_value=0.0042772	fisher_strand_p_value=0.000526511	frequency=7.619476e-02	genotype_quality=643.8	ks_quality_p_value=0.943839	log10_base_likelihood=-16.584	log10_qual_likelihood_position_model=19.084	log10_strand_likelihood_position_model=3.48295	new_cov=3/19	polymorphism_quality=11.3	quality=11.3	quality_position_model=Inf	ref_cov=110/100	reject=FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=113/119
RA	428	.	NC_007779	2387486	1	.	A	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=7.167816e-03	genotype_quality=1377.2	ks_quality_p_value=0.999793	log10_base_likelihood=-7.60601	log10_qual_likelihood_position_model=3.44249	log10_strand_likelihood_position_model=0.308041	new_cov=1/1	polymorphism_quality=2.1	quality=2.1	quality_position_model=1.09113e-05	ref_cov=119/158	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=120/159
RA	429	.	NC_007779	2398441	0	A	C	bias_e_value=572259	bias_p_value=0.123164	fisher_strand_p_value=0.0267093	frequency=2.710533e-02	genotype_quality=789.9	ks_quality_p_value=0.99683	log10_base_likelihood=-6.38733	log10_qual_likelihood_position_model=9.95465	log10_strand_likelihood_position_model=1.65778	new_cov=8/0	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=128/81	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=136/81
RA	430	.	NC_007779	2406075	0	C	T	frequency=1	genotype_quality=1113.8	new_cov=142/140	quality=1113.8	ref_cov=0/0	tot_cov=142/140
RA	431	.	NC_007779	2409404	0	A	C	bias_e_value=6.76824e-09	bias_p_value=1.45669e-15	fisher_strand_p_value=3.75226e-17	frequency=1.517134e-01	genotype_quality=717.1	ks_quality_p_value=1	log10_base_likelihood=-38.9835	log10_qual_likelihood_position_model=34.9985	log10_strand_likelihood_position_model=16.4257	new_cov=0/42	polymorphism_quality=33.8	quality=33.8	quality_position_model=Inf	ref_cov=132/70	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=132/112
RA	432	.	NC_007779	2410289	0	T	A	bias_e_value=408567	bias_p_value=0.0879332	fisher_strand_p_value=0.0178196	frequency=2.252865e-02	genotype_quality=1103.4	ks_quality_p_value=0.97702	log10_base_likelihood=-7.44383	log10_qual_likelihood_position_model=12.9842	log10_strand_likelihood_position_model=1.84114	new_cov=0/7	polymorphism_quality=1.9	quality=1.9	quality_position_model=Inf	ref_cov=134/157	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=134/164
RA	433	.	NC_007779	2410290	0	A	.	bias_e_value=3123480	bias_p_value=0.672247	fisher_strand_p_value=1	frequency=1.407528e-02	genotype_quality=1145.6	ks_quality_p_value=0.309301	log10_base_likelihood=-11.0784	log10_qual_likelihood_position_model=1.58188	log10_strand_likelihood_position_model=0.431439	new_cov=2/2	polymorphism_quality=5.7	quality=5.7	quality_position_model=4.51332e-11	ref_cov=126/154	reject=INDEL_HOMOPOLYMER	tot_cov=128/156
RA	434	.	NC_007779	2410314	1	.	C	bias_e_value=633367	bias_p_value=0.136315	fisher_strand_p_value=0.0303195	frequency=1.992893e-02	genotype_quality=1352.5	ks_quality_p_value=1	log10_base_likelihood=-19.9462	log10_qual_likelihood_position_model=7.72045	log10_strand_likelihood_position_model=1.73313	new_cov=0/6	polymorphism_quality=14.7	quality=14.7	quality_position_model=1.5721e-12	ref_cov=145/150	reject=POLYMORPHISM_STRAND	tot_cov=145/156
RA	435	.	NC_007779	2410316	0	A	C	bias_e_value=6.93653e-12	bias_p_value=1.49291e-18	fisher_strand_p_value=3.25453e-20	frequency=1.535554e-01	genotype_quality=815.7	ks_quality_p_value=1	log10_base_likelihood=-63.6918	log10_qual_likelihood_position_model=35.7076	log10_strand_likelihood_position_model=19.5079	new_cov=0/60	polymorphism_quality=58.7	quality=58.7	quality_position_model=1.80808e-10	ref_cov=148/104	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=148/164
RA	436	.	NC_007779	2416102	0	G	A	frequency=1	genotype_quality=899.7	new_cov=112/115	quality=899.7	ref_cov=0/0	tot_cov=112/115
RA	437	.	NC_007779	2417605	0	C	A	bias_e_value=35.0685	bias_p_value=7.54756e-06	fisher_strand_p_value=6.23662e-07	frequency=4.994774e-02	genotype_quality=847.7	ks_quality_p_value=0.778888	log10_base_likelihood=-10.0737	log10_qual_likelihood_position_model=21.3259	log10_strand_likelihood_position_model=6.25903	new_cov=21/0	polymorphism_quality=4.6	quality=4.6	quality_position_model=Inf	ref_cov=120/129	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=142/129
RA	438	.	NC_007779	2418070	1	.	A	bias_e_value=4587560	bias_p_value=0.98735	fisher_strand_p_value=1	frequency=7.168770e-03	genotype_quality=1362.8	ks_quality_p_value=0.845218	log10_base_likelihood=-8.11088	log10_qual_likelihood_position_model=1.52717	log10_strand_likelihood_position_model=0.305589	new_cov=1/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=3.28973e-08	ref_cov=122/155	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=123/156
RA	439	.	NC_007779	2420679	0	A	.	bias_e_value=3909460	bias_p_value=0.841408	fisher_strand_p_value=0.612436	frequency=1.135540e-02	genotype_quality=1054.7	ks_quality_p_value=0.804371	log10_base_likelihood=-8.09532	log10_qual_likelihood_position_model=1.45913	log10_strand_likelihood_position_model=0.438187	new_cov=1/2	polymorphism_quality=2.6	quality=2.6	quality_position_model=3.98022e-08	ref_cov=135/126	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=136/128
RA	440	.	NC_007779	2420902	0	G	C	bias_e_value=0.00124926	bias_p_value=2.6887e-10	fisher_strand_p_value=1.08121e-11	frequency=8.279514e-02	genotype_quality=791.3	ks_quality_p_value=0.945295	log10_base_likelihood=-18.8829	log10_qual_likelihood_position_model=23.1912	log10_strand_likelihood_position_model=10.9661	new_cov=22/0	polymorphism_quality=13.6	quality=13.6	quality_position_model=Inf	ref_cov=60/153	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=82/153
RA	441	.	NC_007779	2426889	0	A	C	bias_e_value=0.00790317	bias_p_value=1.70095e-09	fisher_strand_p_value=6.98018e-11	frequency=5.774355e-02	genotype_quality=665.7	ks_quality_p_value=0.999269	log10_base_likelihood=-16.4936	log10_qual_likelihood_position_model=15.567	log10_strand_likelihood_position_model=10.1561	new_cov=0/11	polymorphism_quality=11.2	quality=11.2	quality_position_model=Inf	ref_cov=153/15	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=153/26
RA	442	.	NC_007779	2440820	0	T	.	bias_e_value=824987	bias_p_value=0.177557	fisher_strand_p_value=0.119894	frequency=1.030064e-02	genotype_quality=1163.1	ks_quality_p_value=0.356676	log10_base_likelihood=-7.87766	log10_qual_likelihood_position_model=1.57998	log10_strand_likelihood_position_model=0.921202	new_cov=3/0	polymorphism_quality=2.4	quality=2.4	quality_position_model=2.8205e-07	ref_cov=141/147	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=144/147
RA	443	.	NC_007779	2446437	0	A	C	bias_e_value=1.76971e-06	bias_p_value=3.80882e-13	fisher_strand_p_value=1.15085e-14	frequency=9.643126e-02	genotype_quality=677.5	ks_quality_p_value=1	log10_base_likelihood=-14.2714	log10_qual_likelihood_position_model=25.0729	log10_strand_likelihood_position_model=13.939	new_cov=0/28	polymorphism_quality=8.9	quality=8.9	quality_position_model=Inf	ref_cov=137/50	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=138/79
RA	444	.	NC_007779	2446456	0	C	A	bias_e_value=2168.99	bias_p_value=0.000466817	fisher_strand_p_value=4.33838e-05	frequency=3.729343e-02	genotype_quality=749.1	ks_quality_p_value=0.971643	log10_base_likelihood=-6.89955	log10_qual_likelihood_position_model=15.2158	log10_strand_likelihood_position_model=4.36267	new_cov=0/10	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=134/72	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=134/82
RA	445	.	NC_007779	2458860	0	T	G	bias_e_value=782.203	bias_p_value=0.000168349	fisher_strand_p_value=1.38103e-05	frequency=3.044128e-02	genotype_quality=524.9	ks_quality_p_value=1	log10_base_likelihood=-10.0555	log10_qual_likelihood_position_model=5.55098	log10_strand_likelihood_position_model=4.8598	new_cov=5/0	polymorphism_quality=4.6	quality=4.6	quality_position_model=Inf	ref_cov=12/125	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=17/125
RA	446	.	NC_007779	2462295	0	C	T	bias_e_value=27225.4	bias_p_value=0.00585955	fisher_strand_p_value=0.000710259	frequency=2.737427e-02	genotype_quality=1179.1	ks_quality_p_value=1	log10_base_likelihood=-7.69192	log10_qual_likelihood_position_model=14.5613	log10_strand_likelihood_position_model=3.14858	new_cov=10/0	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=142/157	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=152/157
RA	447	.	NC_007779	2465370	0	C	A	bias_e_value=0.000186076	bias_p_value=4.0048e-11	fisher_strand_p_value=1.41839e-12	frequency=9.819603e-02	genotype_quality=513.3	ks_quality_p_value=0.998287	log10_base_likelihood=-20.2602	log10_qual_likelihood_position_model=16.8805	log10_strand_likelihood_position_model=11.8482	new_cov=0/15	polymorphism_quality=15.0	quality=15.0	quality_position_model=Inf	ref_cov=111/14	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=111/29
RA	448	.	NC_007779	2465973	0	T	.	bias_e_value=4528070	bias_p_value=0.974547	fisher_strand_p_value=1	frequency=8.916855e-03	genotype_quality=1352.1	ks_quality_p_value=0.78303	log10_base_likelihood=-7.41234	log10_qual_likelihood_position_model=1.98087	log10_strand_likelihood_position_model=0.399821	new_cov=2/1	polymorphism_quality=1.9	quality=1.9	quality_position_model=6.43487e-07	ref_cov=176/156	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=178/158
RA	449	.	NC_007779	2466047	0	G	A	bias_e_value=3120.4	bias_p_value=0.000671584	fisher_strand_p_value=6.29198e-05	frequency=3.370953e-02	genotype_quality=1045.9	ks_quality_p_value=1	log10_base_likelihood=-6.08503	log10_qual_likelihood_position_model=17.4648	log10_strand_likelihood_position_model=4.20121	new_cov=0/12	polymorphism_quality=0.5	quality=0.5	quality_position_model=Inf	ref_cov=148/113	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=148/125
RA	450	.	NC_007779	2468326	1	.	C	bias_e_value=706668	bias_p_value=0.152092	fisher_strand_p_value=0.372822	frequency=1.773071e-02	genotype_quality=1312.0	ks_quality_p_value=0.0936846	log10_base_likelihood=-22.7746	log10_qual_likelihood_position_model=4.00835	log10_strand_likelihood_position_model=0.755058	new_cov=4/1	polymorphism_quality=17.5	quality=17.5	quality_position_model=3.66483e-20	ref_cov=143/134	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=147/135
RA	451	.	NC_007779	2468327	0	C	.	bias_e_value=571038	bias_p_value=0.122901	fisher_strand_p_value=0.175683	frequency=3.168011e-02	genotype_quality=1165.6	ks_quality_p_value=0.151137	log10_base_likelihood=-28.0223	log10_qual_likelihood_position_model=5.69857	log10_strand_likelihood_position_model=1.08185	new_cov=7/2	polymorphism_quality=22.8	quality=22.8	quality_position_model=1.98743e-23	ref_cov=140/134	reject=INDEL_HOMOPOLYMER	tot_cov=148/136
RA	452	.	NC_007779	2487343	0	A	.	bias_e_value=828190	bias_p_value=0.178246	fisher_strand_p_value=0.0955951	frequency=1.110268e-02	genotype_quality=1092.0	ks_quality_p_value=0.449628	log10_base_likelihood=-7.9957	log10_qual_likelihood_position_model=1.76167	log10_strand_likelihood_position_model=1.01956	new_cov=3/0	polymorphism_quality=2.5	quality=2.5	quality_position_model=4.1546e-07	ref_cov=121/146	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=124/146
RA	453	.	NC_007779	2517218	0	A	C	bias_e_value=5.65144e-16	bias_p_value=1.21632e-22	fisher_strand_p_value=2.19248e-24	frequency=1.130004e-01	genotype_quality=611.5	ks_quality_p_value=1	log10_base_likelihood=-17.0123	log10_qual_likelihood_position_model=34.891	log10_strand_likelihood_position_model=23.6591	new_cov=0/31	polymorphism_quality=11.7	quality=11.7	quality_position_model=Inf	ref_cov=141/15	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=141/46
RA	454	.	NC_007779	2519319	0	T	G	bias_e_value=0.118541	bias_p_value=2.55129e-08	fisher_strand_p_value=1.18363e-09	frequency=5.231142e-02	genotype_quality=886.4	ks_quality_p_value=1	log10_base_likelihood=-5.81282	log10_qual_likelihood_position_model=23.9488	log10_strand_likelihood_position_model=8.92678	new_cov=24/0	polymorphism_quality=0.3	quality=0.3	quality_position_model=Inf	ref_cov=100/152	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=124/152
RA	455	.	NC_007779	2522930	0	T	G	bias_e_value=0.908941	bias_p_value=1.95626e-07	fisher_strand_p_value=1.0077e-08	frequency=7.216215e-02	genotype_quality=818.5	ks_quality_p_value=1	log10_base_likelihood=-12.4258	log10_qual_likelihood_position_model=22.3254	log10_strand_likelihood_position_model=8.19392	new_cov=28/0	polymorphism_quality=7.0	quality=7.0	quality_position_model=Inf	ref_cov=120/129	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=148/129
RA	456	.	NC_007779	2535242	1	.	T	bias_e_value=1343480	bias_p_value=0.289148	fisher_strand_p_value=0.49966	frequency=7.220268e-03	genotype_quality=1353.0	ks_quality_p_value=0.165766	log10_base_likelihood=-7.77047	log10_qual_likelihood_position_model=2.34936	log10_strand_likelihood_position_model=0.557668	new_cov=2/0	polymorphism_quality=2.3	quality=2.3	quality_position_model=9.62936e-07	ref_cov=144/131	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=146/131
RA	457	.	NC_007779	2536601	0	T	G	bias_e_value=1.10565e-11	bias_p_value=2.37962e-18	fisher_strand_p_value=5.24202e-20	frequency=1.561913e-01	genotype_quality=715.9	ks_quality_p_value=1	log10_base_likelihood=-41.8869	log10_qual_likelihood_position_model=34.8335	log10_strand_likelihood_position_model=19.2805	new_cov=42/0	polymorphism_quality=36.8	quality=36.8	quality_position_model=Inf	ref_cov=57/145	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=100/145
RA	458	.	NC_007779	2538628	0	C	T	frequency=1	genotype_quality=1221.0	new_cov=143/164	quality=1221.0	ref_cov=0/0	tot_cov=143/164
RA	459	.	NC_007779	2547179	0	C	.	bias_e_value=4226550	bias_p_value=0.909653	fisher_strand_p_value=0.616727	frequency=1.325607e-02	genotype_quality=938.9	ks_quality_p_value=0.983003	log10_base_likelihood=-7.44829	log10_qual_likelihood_position_model=3.74691	log10_strand_likelihood_position_model=0.432004	new_cov=2/1	polymorphism_quality=1.9	quality=1.9	quality_position_model=4.53279e-05	ref_cov=109/114	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=111/115
RA	460	.	NC_007779	2547180	0	A	.	bias_e_value=4218990	bias_p_value=0.908026	fisher_strand_p_value=0.615157	frequency=1.319695e-02	genotype_quality=892.4	ks_quality_p_value=0.980256	log10_base_likelihood=-7.29048	log10_qual_likelihood_position_model=3.4568	log10_strand_likelihood_position_model=0.434022	new_cov=2/1	polymorphism_quality=1.8	quality=1.8	quality_position_model=3.29947e-05	ref_cov=109/115	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=111/116
RA	461	.	NC_007779	2547181	0	G	.	bias_e_value=4223170	bias_p_value=0.908925	fisher_strand_p_value=0.615157	frequency=1.319695e-02	genotype_quality=942.0	ks_quality_p_value=0.983152	log10_base_likelihood=-7.35305	log10_qual_likelihood_position_model=3.76565	log10_strand_likelihood_position_model=0.434022	new_cov=2/1	polymorphism_quality=1.8	quality=1.8	quality_position_model=6.01732e-05	ref_cov=109/115	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=111/116
RA	462	.	NC_007779	2556426	0	G	T	bias_e_value=0.023033	bias_p_value=4.95723e-09	fisher_strand_p_value=3.19275e-10	frequency=7.447672e-02	genotype_quality=948.3	ks_quality_p_value=0.667247	log10_base_likelihood=-16.7024	log10_qual_likelihood_position_model=30.8252	log10_strand_likelihood_position_model=9.5328	new_cov=0/31	polymorphism_quality=11.4	quality=11.4	quality_position_model=Inf	ref_cov=151/131	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=151/162
RA	463	.	NC_007779	2573372	0	T	.	bias_e_value=4643130	bias_p_value=0.99931	fisher_strand_p_value=1	frequency=1.026058e-02	genotype_quality=1155.9	ks_quality_p_value=0.963087	log10_base_likelihood=-7.42573	log10_qual_likelihood_position_model=3.55094	log10_strand_likelihood_position_model=0.421514	new_cov=1/2	polymorphism_quality=1.9	quality=1.9	quality_position_model=2.89579e-05	ref_cov=144/145	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=145/147
RA	464	.	NC_007779	2577496	0	A	.	bias_e_value=3228300	bias_p_value=0.694806	fisher_strand_p_value=0.608631	frequency=1.122761e-02	genotype_quality=1044.8	ks_quality_p_value=0.540642	log10_base_likelihood=-8.07395	log10_qual_likelihood_position_model=1.75806	log10_strand_likelihood_position_model=0.443489	new_cov=1/2	polymorphism_quality=2.6	quality=2.6	quality_position_model=8.63967e-08	ref_cov=138/126	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=139/128
RA	465	.	NC_007779	2600440	0	A	G	bias_e_value=0.00061483	bias_p_value=1.32326e-10	fisher_strand_p_value=4.89314e-12	frequency=7.647896e-02	genotype_quality=762.2	ks_quality_p_value=1	log10_base_likelihood=-9.94048	log10_qual_likelihood_position_model=18.8303	log10_strand_likelihood_position_model=11.3104	new_cov=27/0	polymorphism_quality=4.5	quality=4.5	quality_position_model=Inf	ref_cov=77/147	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=105/147
RA	466	.	NC_007779	2601998	0	A	C	bias_e_value=0.941302	bias_p_value=2.0259e-07	fisher_strand_p_value=1.04557e-08	frequency=5.200911e-02	genotype_quality=635.2	ks_quality_p_value=1	log10_base_likelihood=-12.7339	log10_qual_likelihood_position_model=13.5484	log10_strand_likelihood_position_model=7.98065	new_cov=0/10	polymorphism_quality=7.3	quality=7.3	quality_position_model=Inf	ref_cov=139/21	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=140/31
RA	467	.	NC_007779	2603994	0	G	C	bias_e_value=776.747	bias_p_value=0.000167174	fisher_strand_p_value=1.37801e-05	frequency=4.553223e-02	genotype_quality=724.0	ks_quality_p_value=0.994575	log10_base_likelihood=-6.69588	log10_qual_likelihood_position_model=14.7585	log10_strand_likelihood_position_model=4.86075	new_cov=13/0	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=81/120	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=94/120
RA	468	.	NC_007779	2610583	0	G	C	bias_e_value=5.02853	bias_p_value=1.08226e-06	fisher_strand_p_value=6.14758e-08	frequency=4.834604e-02	genotype_quality=752.5	ks_quality_p_value=1	log10_base_likelihood=-8.13539	log10_qual_likelihood_position_model=13.777	log10_strand_likelihood_position_model=7.21781	new_cov=1/11	polymorphism_quality=2.7	quality=2.7	quality_position_model=Inf	ref_cov=159/29	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=160/40
RA	469	.	NC_007779	2616347	0	A	C	bias_e_value=2.83765e-07	bias_p_value=6.10729e-14	fisher_strand_p_value=1.74586e-15	frequency=7.402229e-02	genotype_quality=516.5	ks_quality_p_value=1	log10_base_likelihood=-9.30896	log10_qual_likelihood_position_model=21.9705	log10_strand_likelihood_position_model=14.758	new_cov=0/20	polymorphism_quality=3.9	quality=3.9	quality_position_model=Inf	ref_cov=115/16	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=115/36
RA	470	.	NC_007779	2617891	0	G	C	bias_e_value=188.861	bias_p_value=4.06472e-05	fisher_strand_p_value=2.96043e-06	frequency=5.626297e-02	genotype_quality=598.2	ks_quality_p_value=1	log10_base_likelihood=-7.49556	log10_qual_likelihood_position_model=11.9452	log10_strand_likelihood_position_model=5.54093	new_cov=1/13	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=121/49	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=122/62
RA	471	.	NC_007779	2618382	0	A	C	bias_e_value=2.56466	bias_p_value=5.51976e-07	fisher_strand_p_value=3.01336e-08	frequency=2.111053e-02	genotype_quality=645.2	ks_quality_p_value=1	log10_base_likelihood=-6.59628	log10_qual_likelihood_position_model=8.61156	log10_strand_likelihood_position_model=7.52095	new_cov=0/6	polymorphism_quality=1.1	quality=1.1	quality_position_model=Inf	ref_cov=158/6	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=158/12
RA	472	.	NC_007779	2623159	0	T	G	bias_e_value=8.6157e-31	bias_p_value=1.8543e-37	fisher_strand_p_value=2.05853e-39	frequency=2.410650e-01	genotype_quality=578.0	ks_quality_p_value=1	log10_base_likelihood=-43.8973	log10_qual_likelihood_position_model=50.2226	log10_strand_likelihood_position_model=38.6864	new_cov=75/0	polymorphism_quality=38.8	quality=38.8	quality_position_model=Inf	ref_cov=28/139	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=103/139
RA	473	.	NC_007779	2623170	0	A	T	bias_e_value=1037.79	bias_p_value=0.000223358	fisher_strand_p_value=1.87984e-05	frequency=4.206276e-02	genotype_quality=802.9	ks_quality_p_value=1	log10_base_likelihood=-5.63283	log10_qual_likelihood_position_model=8.94123	log10_strand_likelihood_position_model=4.72588	new_cov=13/0	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=100/140	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=113/140
RA	474	.	NC_007779	2623173	0	G	T	bias_e_value=0.140132	bias_p_value=3.01597e-08	fisher_strand_p_value=1.41071e-09	frequency=8.106565e-02	genotype_quality=849.8	ks_quality_p_value=1	log10_base_likelihood=-13.1739	log10_qual_likelihood_position_model=18.7155	log10_strand_likelihood_position_model=8.85056	new_cov=24/0	polymorphism_quality=7.8	quality=7.8	quality_position_model=Inf	ref_cov=91/138	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=115/138
RA	475	.	NC_007779	2624174	0	A	.	bias_e_value=4629890	bias_p_value=0.996462	fisher_strand_p_value=1	frequency=1.327896e-02	genotype_quality=1174.0	ks_quality_p_value=0.917065	log10_base_likelihood=-10.7826	log10_qual_likelihood_position_model=2.82869	log10_strand_likelihood_position_model=0.423681	new_cov=2/2	polymorphism_quality=5.4	quality=5.4	quality_position_model=1.68944e-09	ref_cov=152/144	reject=INDEL_HOMOPOLYMER	tot_cov=155/146
RA	476	.	NC_007779	2640922	0	T	G	bias_e_value=2.32309e-13	bias_p_value=4.99983e-20	fisher_strand_p_value=1.01332e-21	frequency=1.111584e-01	genotype_quality=818.5	ks_quality_p_value=1	log10_base_likelihood=-18.1165	log10_qual_likelihood_position_model=43.811	log10_strand_likelihood_position_model=20.9943	new_cov=48/0	polymorphism_quality=12.8	quality=12.8	quality_position_model=Inf	ref_cov=69/160	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=118/160
RA	477	.	NC_007779	2641345	0	T	G	bias_e_value=1.21308	bias_p_value=2.61082e-07	fisher_strand_p_value=1.36631e-08	frequency=5.969667e-02	genotype_quality=514.8	ks_quality_p_value=1	log10_base_likelihood=-14.8576	log10_qual_likelihood_position_model=12.9844	log10_strand_likelihood_position_model=7.86445	new_cov=10/0	polymorphism_quality=9.5	quality=9.5	quality_position_model=Inf	ref_cov=17/114	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=27/114
RA	478	.	NC_007779	2646804	0	A	C	bias_e_value=6.69877e-18	bias_p_value=1.44173e-24	fisher_strand_p_value=2.40328e-26	frequency=1.042032e-01	genotype_quality=841.1	ks_quality_p_value=1	log10_base_likelihood=-18.2573	log10_qual_likelihood_position_model=47.442	log10_strand_likelihood_position_model=25.6192	new_cov=0/49	polymorphism_quality=13.0	quality=13.0	quality_position_model=Inf	ref_cov=178/53	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=178/102
RA	479	.	NC_007779	2648595	0	A	C	bias_e_value=1.43439e-11	bias_p_value=3.08715e-18	fisher_strand_p_value=6.84075e-20	frequency=1.207008e-01	genotype_quality=535.3	ks_quality_p_value=1	log10_base_likelihood=-24.8799	log10_qual_likelihood_position_model=25.0194	log10_strand_likelihood_position_model=19.1649	new_cov=0/21	polymorphism_quality=19.6	quality=19.6	quality_position_model=Inf	ref_cov=128/8	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=128/29
RA	480	.	NC_007779	2672817	0	A	C	bias_e_value=1.02321e-10	bias_p_value=2.20218e-17	fisher_strand_p_value=5.10728e-19	frequency=1.379094e-01	genotype_quality=513.0	ks_quality_p_value=1	log10_base_likelihood=-21.2322	log10_qual_likelihood_position_model=30.9651	log10_strand_likelihood_position_model=18.2918	new_cov=0/36	polymorphism_quality=16.0	quality=16.0	quality_position_model=Inf	ref_cov=109/32	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=109/69
RA	481	.	NC_007779	2700681	0	T	G	bias_e_value=1.22563e-06	bias_p_value=2.63784e-13	fisher_strand_p_value=7.88016e-15	frequency=1.104355e-01	genotype_quality=780.7	ks_quality_p_value=1	log10_base_likelihood=-14.9671	log10_qual_likelihood_position_model=35.4937	log10_strand_likelihood_position_model=14.1035	new_cov=39/0	polymorphism_quality=9.6	quality=9.6	quality_position_model=Inf	ref_cov=84/134	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=123/134
RA	482	.	NC_007779	2704581	0	G	C	bias_e_value=0.522209	bias_p_value=1.12392e-07	fisher_strand_p_value=5.63455e-09	frequency=4.967976e-02	genotype_quality=755.7	ks_quality_p_value=0.997502	log10_base_likelihood=-9.79875	log10_qual_likelihood_position_model=14.9149	log10_strand_likelihood_position_model=8.24914	new_cov=12/0	polymorphism_quality=4.4	quality=4.4	quality_position_model=Inf	ref_cov=34/156	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=46/156
RA	483	.	NC_007779	2708923	0	A	C	bias_e_value=0.000225355	bias_p_value=4.85018e-11	fisher_strand_p_value=1.72698e-12	frequency=8.219194e-02	genotype_quality=892.5	ks_quality_p_value=1	log10_base_likelihood=-12.5558	log10_qual_likelihood_position_model=28.5248	log10_strand_likelihood_position_model=11.8187	new_cov=0/37	polymorphism_quality=7.2	quality=7.2	quality_position_model=Inf	ref_cov=146/116	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=146/153
RA	484	.	NC_007779	2708935	0	A	C	bias_e_value=4.58246e-15	bias_p_value=9.86253e-22	fisher_strand_p_value=1.84882e-23	frequency=1.871424e-01	genotype_quality=775.7	ks_quality_p_value=1	log10_base_likelihood=-44.7147	log10_qual_likelihood_position_model=43.2108	log10_strand_likelihood_position_model=22.8364	new_cov=0/67	polymorphism_quality=39.6	quality=39.6	quality_position_model=Inf	ref_cov=150/94	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=151/162
RA	485	.	NC_007779	2715311	1	.	T	bias_e_value=3095730	bias_p_value=0.666274	fisher_strand_p_value=0.501012	frequency=6.230354e-03	genotype_quality=1583.4	ks_quality_p_value=0.607263	log10_base_likelihood=-7.56434	log10_qual_likelihood_position_model=2.13313	log10_strand_likelihood_position_model=0.54313	new_cov=2/0	polymorphism_quality=2.1	quality=2.1	quality_position_model=9.07704e-07	ref_cov=170/149	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=172/149
RA	486	.	NC_007779	2724454	1	.	T	bias_e_value=4646330	bias_p_value=0.999999	fisher_strand_p_value=1	frequency=6.471634e-03	genotype_quality=1518.8	ks_quality_p_value=0.998483	log10_base_likelihood=-7.41028	log10_qual_likelihood_position_model=2.51016	log10_strand_likelihood_position_model=0.307336	new_cov=1/1	polymorphism_quality=1.9	quality=1.9	quality_position_model=1.84394e-06	ref_cov=133/174	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=134/175
RA	487	.	NC_007779	2733191	1	.	C	bias_e_value=2705360	bias_p_value=0.582257	fisher_strand_p_value=1	frequency=8.439064e-03	genotype_quality=1105.7	ks_quality_p_value=0.239824	log10_base_likelihood=-8.79325	log10_qual_likelihood_position_model=2.1566	log10_strand_likelihood_position_model=0.299573	new_cov=1/1	polymorphism_quality=3.3	quality=3.3	quality_position_model=2.85952e-08	ref_cov=114/121	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=115/122
RA	488	.	NC_007779	2751922	0	A	C	bias_e_value=14.4014	bias_p_value=3.09951e-06	fisher_strand_p_value=1.87999e-07	frequency=3.298283e-02	genotype_quality=838.2	ks_quality_p_value=1	log10_base_likelihood=-7.98907	log10_qual_likelihood_position_model=24.5	log10_strand_likelihood_position_model=6.98996	new_cov=0/22	polymorphism_quality=2.5	quality=2.5	quality_position_model=Inf	ref_cov=134/113	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=134/138
RA	489	.	NC_007779	2767290	0	A	T	bias_e_value=4595.34	bias_p_value=0.000989025	fisher_strand_p_value=9.65312e-05	frequency=4.032230e-02	genotype_quality=1054.4	ks_quality_p_value=1	log10_base_likelihood=-8.30286	log10_qual_likelihood_position_model=17.0617	log10_strand_likelihood_position_model=4.16336	new_cov=14/0	polymorphism_quality=2.8	quality=2.8	quality_position_model=Inf	ref_cov=137/142	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=151/142
RA	490	.	NC_007779	2771144	0	G	T	bias_e_value=5.08436	bias_p_value=1.09427e-06	fisher_strand_p_value=7.85283e-08	frequency=5.303288e-02	genotype_quality=764.5	ks_quality_p_value=0.792066	log10_base_likelihood=-8.68108	log10_qual_likelihood_position_model=20.6107	log10_strand_likelihood_position_model=7.10497	new_cov=0/20	polymorphism_quality=3.2	quality=3.2	quality_position_model=Inf	ref_cov=132/94	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=132/114
RA	491	.	NC_007779	2780301	0	A	C	bias_e_value=2.43032e-11	bias_p_value=5.23061e-18	fisher_strand_p_value=1.17306e-19	frequency=7.712078e-02	genotype_quality=956.0	ks_quality_p_value=1	log10_base_likelihood=-9.23851	log10_qual_likelihood_position_model=36.3576	log10_strand_likelihood_position_model=18.9307	new_cov=0/47	polymorphism_quality=3.8	quality=3.8	quality_position_model=Inf	ref_cov=174/91	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=174/138
RA	492	.	NC_007779	2781165	0	A	C	bias_e_value=3.82975e-09	bias_p_value=8.24252e-16	fisher_strand_p_value=2.09169e-17	frequency=4.707146e-02	genotype_quality=1009.6	ks_quality_p_value=1	log10_base_likelihood=-6.65633	log10_qual_likelihood_position_model=33.039	log10_strand_likelihood_position_model=16.6795	new_cov=0/43	polymorphism_quality=1.1	quality=1.1	quality_position_model=Inf	ref_cov=182/105	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=182/149
RA	493	.	NC_007779	2791171	0	G	T	bias_e_value=0.00887878	bias_p_value=1.91092e-09	fisher_strand_p_value=7.87532e-11	frequency=7.156944e-02	genotype_quality=890.2	ks_quality_p_value=1	log10_base_likelihood=-13.0136	log10_qual_likelihood_position_model=21.1156	log10_strand_likelihood_position_model=10.1037	new_cov=0/26	polymorphism_quality=7.6	quality=7.6	quality_position_model=Inf	ref_cov=155/94	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=155/122
RA	494	.	NC_007779	2791635	0	C	T	bias_e_value=7.05016e-08	bias_p_value=1.51736e-14	fisher_strand_p_value=4.16695e-16	frequency=1.072364e-01	genotype_quality=645.1	ks_quality_p_value=1	log10_base_likelihood=-17.2537	log10_qual_likelihood_position_model=23.539	log10_strand_likelihood_position_model=15.3802	new_cov=0/24	polymorphism_quality=11.9	quality=11.9	quality_position_model=Inf	ref_cov=141/30	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=141/56
RA	495	.	NC_007779	2791639	0	C	G	bias_e_value=0.0044551	bias_p_value=9.58842e-10	fisher_strand_p_value=3.8379e-11	frequency=8.373451e-02	genotype_quality=740.9	ks_quality_p_value=1	log10_base_likelihood=-19.97	log10_qual_likelihood_position_model=18.0679	log10_strand_likelihood_position_model=10.4159	new_cov=0/19	polymorphism_quality=14.7	quality=14.7	quality_position_model=Inf	ref_cov=141/46	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=141/65
RA	496	.	NC_007779	2797644	0	C	A	bias_e_value=4.30483	bias_p_value=9.26501e-07	fisher_strand_p_value=5.21405e-08	frequency=7.053566e-02	genotype_quality=840.2	ks_quality_p_value=1	log10_base_likelihood=-16.8615	log10_qual_likelihood_position_model=16.7417	log10_strand_likelihood_position_model=7.29318	new_cov=1/18	polymorphism_quality=11.5	quality=11.5	quality_position_model=Inf	ref_cov=156/72	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=157/90
RA	497	.	NC_007779	2816615	0	G	C	bias_e_value=5.63486e-16	bias_p_value=1.21275e-22	fisher_strand_p_value=2.87469e-24	frequency=2.281790e-01	genotype_quality=581.3	ks_quality_p_value=0.760407	log10_base_likelihood=-80.8943	log10_qual_likelihood_position_model=42.1622	log10_strand_likelihood_position_model=23.5414	new_cov=53/0	polymorphism_quality=75.9	quality=75.9	quality_position_model=2.63396e-17	ref_cov=46/126	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=99/126
RA	498	.	NC_007779	2817030	0	G	C	bias_e_value=8.80093e-26	bias_p_value=1.89417e-32	fisher_strand_p_value=3.22047e-34	frequency=2.086906e-01	genotype_quality=785.2	ks_quality_p_value=0.750153	log10_base_likelihood=-87.7122	log10_qual_likelihood_position_model=50.2722	log10_strand_likelihood_position_model=33.4921	new_cov=60/0	polymorphism_quality=82.7	quality=82.7	quality_position_model=8.72561e-06	ref_cov=40/177	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=100/177
RA	499	.	NC_007779	2817030	1	.	C	bias_e_value=1672990	bias_p_value=0.360067	fisher_strand_p_value=0.127265	frequency=7.379532e-03	genotype_quality=1094.4	ks_quality_p_value=0.890381	log10_base_likelihood=-7.82213	log10_qual_likelihood_position_model=1.85403	log10_strand_likelihood_position_model=0.89529	new_cov=2/0	polymorphism_quality=2.3	quality=2.3	quality_position_model=5.83101e-07	ref_cov=95/174	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=97/174
RA	500	.	NC_007779	2833989	0	A	C	bias_e_value=9.59561e-15	bias_p_value=2.0652e-21	fisher_strand_p_value=3.92686e-23	frequency=1.119556e-01	genotype_quality=773.4	ks_quality_p_value=1	log10_base_likelihood=-24.4701	log10_qual_likelihood_position_model=33.3478	log10_strand_likelihood_position_model=22.406	new_cov=0/30	polymorphism_quality=19.2	quality=19.2	quality_position_model=Inf	ref_cov=171/23	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=171/53
RA	501	.	NC_007779	2839291	1	.	G	bias_e_value=2185890	bias_p_value=0.470454	fisher_strand_p_value=0.192701	frequency=7.272720e-03	genotype_quality=1339.6	ks_quality_p_value=0.879919	log10_base_likelihood=-7.84148	log10_qual_likelihood_position_model=1.77671	log10_strand_likelihood_position_model=0.715117	new_cov=2/0	polymorphism_quality=2.4	quality=2.4	quality_position_model=3.00724e-07	ref_cov=119/154	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=121/154
RA	502	.	NC_007779	2839296	0	A	G	bias_e_value=0.000116821	bias_p_value=2.51427e-11	fisher_strand_p_value=8.74856e-13	frequency=7.849407e-02	genotype_quality=657.4	ks_quality_p_value=0.999081	log10_base_likelihood=-16.6364	log10_qual_likelihood_position_model=18.7201	log10_strand_likelihood_position_model=12.0581	new_cov=17/0	polymorphism_quality=11.3	quality=11.3	quality_position_model=Inf	ref_cov=29/155	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=46/155
RA	503	.	NC_007779	2847445	0	G	T	bias_e_value=1.1722	bias_p_value=2.52286e-07	fisher_strand_p_value=1.31778e-08	frequency=7.020330e-02	genotype_quality=914.3	ks_quality_p_value=1	log10_base_likelihood=-18.6445	log10_qual_likelihood_position_model=17.7126	log10_strand_likelihood_position_model=7.88016	new_cov=0/23	polymorphism_quality=13.3	quality=13.3	quality_position_model=Inf	ref_cov=145/109	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=145/132
RA	504	.	NC_007779	2864518	0	T	G	bias_e_value=3.18321e-11	bias_p_value=6.85101e-18	fisher_strand_p_value=1.54603e-19	frequency=8.371258e-02	genotype_quality=631.5	ks_quality_p_value=1	log10_base_likelihood=-8.69248	log10_qual_likelihood_position_model=26.8409	log10_strand_likelihood_position_model=18.8108	new_cov=27/0	polymorphism_quality=3.2	quality=3.2	quality_position_model=Inf	ref_cov=23/143	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=50/143
RA	505	.	NC_007779	2865228	0	A	G	bias_e_value=1217220	bias_p_value=0.261975	fisher_strand_p_value=0.128499	frequency=2.224922e-02	genotype_quality=1198.6	ks_quality_p_value=0.561905	log10_base_likelihood=-15.5938	log10_qual_likelihood_position_model=4.60015	log10_strand_likelihood_position_model=1.11445	new_cov=1/6	polymorphism_quality=10.3	quality=10.3	quality_position_model=6.64461e-12	ref_cov=144/163	reject=POLYMORPHISM_STRAND	tot_cov=145/169
RA	506	.	NC_007779	2866111	0	A	G	frequency=1	genotype_quality=1215.0	new_cov=126/157	quality=1215.0	ref_cov=0/0	tot_cov=126/157
RA	507	.	NC_007779	2895131	0	A	C	bias_e_value=7.2216e-10	bias_p_value=1.55426e-16	fisher_strand_p_value=3.78011e-18	frequency=9.912825e-02	genotype_quality=673.2	ks_quality_p_value=1	log10_base_likelihood=-15.4058	log10_qual_likelihood_position_model=32.1535	log10_strand_likelihood_position_model=17.4225	new_cov=0/28	polymorphism_quality=10.1	quality=10.1	quality_position_model=Inf	ref_cov=139/30	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=139/58
RA	508	.	NC_007779	2895144	0	G	C	bias_e_value=8.84149e-05	bias_p_value=1.9029e-11	fisher_strand_p_value=6.54947e-13	frequency=1.012063e-01	genotype_quality=651.4	ks_quality_p_value=1	log10_base_likelihood=-19.7318	log10_qual_likelihood_position_model=21.0579	log10_strand_likelihood_position_model=12.1838	new_cov=0/23	polymorphism_quality=14.4	quality=14.4	quality_position_model=Inf	ref_cov=130/43	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=130/67
RA	509	.	NC_007779	2898954	0	A	.	bias_e_value=4645700	bias_p_value=0.999863	fisher_strand_p_value=1	frequency=1.392269e-02	genotype_quality=1146.8	ks_quality_p_value=0.983492	log10_base_likelihood=-10.36	log10_qual_likelihood_position_model=3.42151	log10_strand_likelihood_position_model=0.448805	new_cov=2/2	polymorphism_quality=4.9	quality=4.9	quality_position_model=1.98986e-08	ref_cov=117/166	reject=INDEL_HOMOPOLYMER	tot_cov=119/168
RA	510	.	NC_007779	2915479	0	C	G	bias_e_value=0.0521308	bias_p_value=1.12198e-08	fisher_strand_p_value=5.01846e-10	frequency=4.675674e-02	genotype_quality=745.0	ks_quality_p_value=0.997397	log10_base_likelihood=-6.80887	log10_qual_likelihood_position_model=15.7285	log10_strand_likelihood_position_model=9.29943	new_cov=0/12	polymorphism_quality=1.3	quality=1.3	quality_position_model=Inf	ref_cov=160/26	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=160/38
RA	511	.	NC_007779	2926157	0	T	G	bias_e_value=3.71769e-11	bias_p_value=8.00135e-18	fisher_strand_p_value=1.81212e-19	frequency=4.000282e-02	genotype_quality=778.1	ks_quality_p_value=1	log10_base_likelihood=-7.1054	log10_qual_likelihood_position_model=22.9157	log10_strand_likelihood_position_model=18.7418	new_cov=16/0	polymorphism_quality=1.6	quality=1.6	quality_position_model=Inf	ref_cov=6/189	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=22/189
RA	512	.	NC_007779	2939008	0	A	C	bias_e_value=7.56694e-05	bias_p_value=1.62858e-11	fisher_strand_p_value=5.5744e-13	frequency=9.500408e-02	genotype_quality=685.7	ks_quality_p_value=1	log10_base_likelihood=-10.5996	log10_qual_likelihood_position_model=24.0498	log10_strand_likelihood_position_model=12.2538	new_cov=0/29	polymorphism_quality=5.2	quality=5.2	quality_position_model=Inf	ref_cov=129/64	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=129/94
RA	513	.	NC_007779	2942976	0	G	T	bias_e_value=2827.04	bias_p_value=0.000608446	fisher_strand_p_value=5.64289e-05	frequency=2.670288e-02	genotype_quality=1026.3	ks_quality_p_value=1	log10_base_likelihood=-7.87006	log10_qual_likelihood_position_model=11.3658	log10_strand_likelihood_position_model=4.2485	new_cov=0/12	polymorphism_quality=2.4	quality=2.4	quality_position_model=Inf	ref_cov=158/119	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=158/131
RA	514	.	NC_007779	2945991	1	.	A	bias_e_value=4629500	bias_p_value=0.996377	fisher_strand_p_value=1	frequency=7.194519e-03	genotype_quality=1340.6	ks_quality_p_value=0.916096	log10_base_likelihood=-7.91844	log10_qual_likelihood_position_model=1.60777	log10_strand_likelihood_position_model=0.300027	new_cov=1/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=6.21618e-08	ref_cov=143/133	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=144/134
RA	515	.	NC_007779	2979768	0	C	A	bias_e_value=1.42431	bias_p_value=3.06545e-07	fisher_strand_p_value=1.66697e-08	frequency=4.429054e-02	genotype_quality=811.0	ks_quality_p_value=0.970968	log10_base_likelihood=-8.72028	log10_qual_likelihood_position_model=20.6309	log10_strand_likelihood_position_model=7.77807	new_cov=0/15	polymorphism_quality=3.3	quality=3.3	quality_position_model=Inf	ref_cov=156/60	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=156/75
RA	516	.	NC_007779	2983097	0	A	C	bias_e_value=2.0995e-13	bias_p_value=4.51862e-20	fisher_strand_p_value=9.13881e-22	frequency=1.445537e-01	genotype_quality=545.7	ks_quality_p_value=1	log10_base_likelihood=-16.0733	log10_qual_likelihood_position_model=42.9967	log10_strand_likelihood_position_model=21.0391	new_cov=0/43	polymorphism_quality=10.7	quality=10.7	quality_position_model=Inf	ref_cov=115/35	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=115/78
RA	517	.	NC_007779	2987535	0	A	C	bias_e_value=1.87561e-38	bias_p_value=4.03676e-45	fisher_strand_p_value=3.74113e-47	frequency=3.347459e-01	genotype_quality=558.7	ks_quality_p_value=1	log10_base_likelihood=-113.015	log10_qual_likelihood_position_model=74.1591	log10_strand_likelihood_position_model=46.4415	new_cov=0/113	polymorphism_quality=108.1	quality=108.1	quality_position_model=Inf	ref_cov=145/43	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=145/156
RA	518	.	NC_007779	2994663	1	.	T	bias_e_value=2772430	bias_p_value=0.596693	fisher_strand_p_value=1	frequency=6.666183e-03	genotype_quality=1477.6	ks_quality_p_value=0.250086	log10_base_likelihood=-7.80413	log10_qual_likelihood_position_model=1.08651	log10_strand_likelihood_position_model=0.300063	new_cov=1/1	polymorphism_quality=2.3	quality=2.3	quality_position_model=2.36175e-08	ref_cov=154/144	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=155/145
RA	519	.	NC_007779	2999826	0	A	C	bias_e_value=1.22497e-08	bias_p_value=2.63643e-15	fisher_strand_p_value=6.89939e-17	frequency=6.851721e-02	genotype_quality=615.1	ks_quality_p_value=1	log10_base_likelihood=-8.36648	log10_qual_likelihood_position_model=25.2735	log10_strand_likelihood_position_model=16.1612	new_cov=0/27	polymorphism_quality=2.9	quality=2.9	quality_position_model=Inf	ref_cov=131/31	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=131/59
RA	520	.	NC_007779	3003330	0	G	A	frequency=1	genotype_quality=1099.0	new_cov=146/124	quality=1099.0	ref_cov=0/0	tot_cov=146/124
RA	521	.	NC_007779	3024027	0	C	G	bias_e_value=5173.58	bias_p_value=0.00111348	fisher_strand_p_value=0.00011009	frequency=3.448296e-02	genotype_quality=854.9	ks_quality_p_value=1	log10_base_likelihood=-6.93207	log10_qual_likelihood_position_model=9.75252	log10_strand_likelihood_position_model=3.95825	new_cov=10/0	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=90/142	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=100/142
RA	522	.	NC_007779	3029385	0	C	A	bias_e_value=2.38234e-13	bias_p_value=5.12735e-20	fisher_strand_p_value=1.07766e-21	frequency=1.378756e-01	genotype_quality=774.8	ks_quality_p_value=0.964782	log10_base_likelihood=-69.1897	log10_qual_likelihood_position_model=30.2193	log10_strand_likelihood_position_model=20.9694	new_cov=1/30	polymorphism_quality=64.2	quality=64.2	quality_position_model=3.75263e-20	ref_cov=170/23	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=171/53
RA	523	.	NC_007779	3034413	0	A	C	bias_e_value=1.67119e-15	bias_p_value=3.59679e-22	fisher_strand_p_value=6.61507e-24	frequency=1.441331e-01	genotype_quality=634.3	ks_quality_p_value=1	log10_base_likelihood=-25.6062	log10_qual_likelihood_position_model=35.5148	log10_strand_likelihood_position_model=23.1795	new_cov=0/46	polymorphism_quality=20.4	quality=20.4	quality_position_model=Inf	ref_cov=135/40	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=135/86
RA	524	.	NC_007779	3035390	0	T	C	bias_e_value=2.06279e-23	bias_p_value=4.4396e-30	fisher_strand_p_value=6.09321e-32	frequency=2.580652e-01	genotype_quality=317.0	ks_quality_p_value=0.999805	log10_base_likelihood=-86.7474	log10_qual_likelihood_position_model=24.6013	log10_strand_likelihood_position_model=31.2152	new_cov=0/46	polymorphism_quality=81.8	quality=81.8	quality_position_model=3.38067e-33	ref_cov=117/11	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=120/57
RA	525	.	NC_007779	3035883	0	C	A	bias_e_value=7113.94	bias_p_value=0.00153109	fisher_strand_p_value=0.000156872	frequency=3.109932e-02	genotype_quality=910.2	ks_quality_p_value=1	log10_base_likelihood=-6.67943	log10_qual_likelihood_position_model=10.9201	log10_strand_likelihood_position_model=3.80445	new_cov=12/0	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=121/137	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=134/137
RA	526	.	NC_007779	3044712	0	T	C	bias_e_value=0.346441	bias_p_value=7.45623e-08	fisher_strand_p_value=3.72348e-09	frequency=4.938936e-02	genotype_quality=625.6	ks_quality_p_value=0.980239	log10_base_likelihood=-12.4559	log10_qual_likelihood_position_model=12.9342	log10_strand_likelihood_position_model=8.42905	new_cov=10/0	polymorphism_quality=7.1	quality=7.1	quality_position_model=Inf	ref_cov=22/163	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=32/163
RA	527	.	NC_007779	3044714	0	A	C	bias_e_value=108.107	bias_p_value=2.32672e-05	fisher_strand_p_value=1.62357e-06	frequency=4.093361e-02	genotype_quality=571.3	ks_quality_p_value=1	log10_base_likelihood=-10.6173	log10_qual_likelihood_position_model=10.2014	log10_strand_likelihood_position_model=5.80229	new_cov=9/2	polymorphism_quality=5.2	quality=5.2	quality_position_model=Inf	ref_cov=24/162	reject=FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=33/164
RA	528	.	NC_007779	3049815	0	G	T	frequency=1	genotype_quality=1129.1	new_cov=151/133	quality=1129.1	ref_cov=0/0	tot_cov=151/133
RA	529	.	NC_007779	3059420	1	.	T	bias_e_value=1427410	bias_p_value=0.307211	fisher_strand_p_value=0.370987	frequency=1.277924e-02	genotype_quality=1507.5	ks_quality_p_value=0.243152	log10_base_likelihood=-16.7324	log10_qual_likelihood_position_model=2.70882	log10_strand_likelihood_position_model=0.604884	new_cov=3/1	polymorphism_quality=11.4	quality=11.4	quality_position_model=1.65495e-15	ref_cov=153/156	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=156/157
RA	530	.	NC_007779	3059421	0	T	.	bias_e_value=4481370	bias_p_value=0.964497	fisher_strand_p_value=1	frequency=9.420395e-03	genotype_quality=1246.0	ks_quality_p_value=0.745648	log10_base_likelihood=-7.39375	log10_qual_likelihood_position_model=2.52527	log10_strand_likelihood_position_model=0.424601	new_cov=1/2	polymorphism_quality=1.9	quality=1.9	quality_position_model=2.63778e-06	ref_cov=158/157	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=159/159
RA	531	.	NC_007779	3074129	0	G	T	bias_e_value=1822.36	bias_p_value=0.000392215	fisher_strand_p_value=3.48158e-05	frequency=3.212643e-02	genotype_quality=1050.8	ks_quality_p_value=1	log10_base_likelihood=-7.14008	log10_qual_likelihood_position_model=12.7006	log10_strand_likelihood_position_model=4.49737	new_cov=0/16	polymorphism_quality=1.6	quality=1.6	quality_position_model=Inf	ref_cov=146/152	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=146/169
RA	532	.	NC_007779	3082401	0	C	A	bias_e_value=41.1342	bias_p_value=8.85306e-06	fisher_strand_p_value=5.7611e-07	frequency=3.746700e-02	genotype_quality=1145.6	ks_quality_p_value=1	log10_base_likelihood=-6.30004	log10_qual_likelihood_position_model=18.2524	log10_strand_likelihood_position_model=6.23949	new_cov=18/0	polymorphism_quality=0.8	quality=0.8	quality_position_model=Inf	ref_cov=129/169	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=147/169
RA	533	.	NC_007779	3084663	0	C	A	bias_e_value=921.301	bias_p_value=0.000198286	fisher_strand_p_value=1.65077e-05	frequency=2.895737e-02	genotype_quality=1120.2	ks_quality_p_value=1	log10_base_likelihood=-8.24759	log10_qual_likelihood_position_model=17.3918	log10_strand_likelihood_position_model=4.82316	new_cov=17/0	polymorphism_quality=2.8	quality=2.8	quality_position_model=Inf	ref_cov=156/152	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=173/152
RA	534	.	NC_007779	3085177	1	.	A	bias_e_value=2734210	bias_p_value=0.588466	fisher_strand_p_value=0.500895	frequency=7.407188e-03	genotype_quality=1313.2	ks_quality_p_value=0.487528	log10_base_likelihood=-8.19521	log10_qual_likelihood_position_model=1.88799	log10_strand_likelihood_position_model=0.541386	new_cov=2/0	polymorphism_quality=2.7	quality=2.7	quality_position_model=1.11376e-07	ref_cov=143/125	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=145/125
RA	535	.	NC_007779	3090796	0	A	C	bias_e_value=0.0665559	bias_p_value=1.43244e-08	fisher_strand_p_value=6.4642e-10	frequency=4.712582e-02	genotype_quality=842.5	ks_quality_p_value=1	log10_base_likelihood=-12.7761	log10_qual_likelihood_position_model=19.1308	log10_strand_likelihood_position_model=9.18949	new_cov=0/23	polymorphism_quality=7.4	quality=7.4	quality_position_model=Inf	ref_cov=155/91	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=155/117
RA	536	.	NC_007779	3099102	0	T	.	bias_e_value=2422610	bias_p_value=0.521403	fisher_strand_p_value=0.323694	frequency=1.364231e-02	genotype_quality=1154.7	ks_quality_p_value=0.616937	log10_base_likelihood=-10.9457	log10_qual_likelihood_position_model=1.90837	log10_strand_likelihood_position_model=0.720034	new_cov=1/3	polymorphism_quality=5.5	quality=5.5	quality_position_model=2.63111e-10	ref_cov=163/126	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=164/129
RA	537	.	NC_007779	3110532	0	C	A	bias_e_value=6.81407e-07	bias_p_value=1.46655e-13	fisher_strand_p_value=4.36284e-15	frequency=1.047945e-01	genotype_quality=565.6	ks_quality_p_value=0.986358	log10_base_likelihood=-32.6969	log10_qual_likelihood_position_model=18.7739	log10_strand_likelihood_position_model=14.3602	new_cov=0/17	polymorphism_quality=27.5	quality=27.5	quality_position_model=Inf	ref_cov=128/13	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=128/30
RA	538	.	NC_007779	3152854	1	.	A	bias_e_value=3748110	bias_p_value=0.806682	fisher_strand_p_value=1	frequency=1.119423e-02	genotype_quality=1286.5	ks_quality_p_value=0.446701	log10_base_likelihood=-12.9098	log10_qual_likelihood_position_model=2.39383	log10_strand_likelihood_position_model=0.406054	new_cov=2/1	polymorphism_quality=7.5	quality=7.5	quality_position_model=3.86309e-12	ref_cov=138/127	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=140/128
RA	539	.	NC_007779	3152855	0	A	.	bias_e_value=4361730	bias_p_value=0.938746	fisher_strand_p_value=0.740479	frequency=3.271389e-02	genotype_quality=1060.5	ks_quality_p_value=0.906261	log10_base_likelihood=-26.9697	log10_qual_likelihood_position_model=5.12873	log10_strand_likelihood_position_model=0.628152	new_cov=4/5	polymorphism_quality=21.7	quality=21.7	quality_position_model=2.12638e-23	ref_cov=140/126	reject=INDEL_HOMOPOLYMER	tot_cov=144/131
RA	540	.	NC_007779	3160153	0	G	C	bias_e_value=3.28495e-09	bias_p_value=7.06998e-16	fisher_strand_p_value=1.787e-17	frequency=1.320944e-01	genotype_quality=564.3	ks_quality_p_value=1	log10_base_likelihood=-52.2009	log10_qual_likelihood_position_model=17.0174	log10_strand_likelihood_position_model=16.7479	new_cov=23/0	polymorphism_quality=47.1	quality=47.1	quality_position_model=1.36362e-20	ref_cov=19/131	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=43/131
RA	541	.	NC_007779	3162929	0	G	C	bias_e_value=0.0536941	bias_p_value=1.15562e-08	fisher_strand_p_value=8.06373e-10	frequency=9.933949e-02	genotype_quality=699.5	ks_quality_p_value=0.640228	log10_base_likelihood=-21.7367	log10_qual_likelihood_position_model=28.7474	log10_strand_likelihood_position_model=9.09346	new_cov=27/0	polymorphism_quality=16.5	quality=16.5	quality_position_model=Inf	ref_cov=88/119	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=116/119
RA	542	.	NC_007779	3195467	0	A	C	bias_e_value=0.00244709	bias_p_value=5.26672e-10	fisher_strand_p_value=2.05672e-11	frequency=6.861019e-02	genotype_quality=754.3	ks_quality_p_value=1	log10_base_likelihood=-9.71625	log10_qual_likelihood_position_model=24.723	log10_strand_likelihood_position_model=10.6868	new_cov=0/24	polymorphism_quality=4.3	quality=4.3	quality_position_model=Inf	ref_cov=145/69	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=145/96
RA	543	.	NC_007779	3212355	0	G	C	bias_e_value=5.00581e-10	bias_p_value=1.07737e-16	fisher_strand_p_value=2.70658e-18	frequency=1.410637e-01	genotype_quality=677.3	ks_quality_p_value=0.959348	log10_base_likelihood=-39.1066	log10_qual_likelihood_position_model=28.6966	log10_strand_likelihood_position_model=17.5676	new_cov=32/0	polymorphism_quality=34.0	quality=34.0	quality_position_model=Inf	ref_cov=40/141	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=72/141
RA	544	.	NC_007779	3231285	0	C	A	bias_e_value=3286.7	bias_p_value=0.000707376	fisher_strand_p_value=6.66309e-05	frequency=3.312206e-02	genotype_quality=747.4	ks_quality_p_value=1	log10_base_likelihood=-6.94725	log10_qual_likelihood_position_model=11.443	log10_strand_likelihood_position_model=4.17632	new_cov=0/8	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=129/51	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=129/59
RA	545	.	NC_007779	3231302	0	C	G	bias_e_value=0.00378917	bias_p_value=8.15519e-10	fisher_strand_p_value=3.24235e-11	frequency=1.038957e-01	genotype_quality=659.5	ks_quality_p_value=1	log10_base_likelihood=-26.9488	log10_qual_likelihood_position_model=17.7139	log10_strand_likelihood_position_model=10.4891	new_cov=0/22	polymorphism_quality=21.7	quality=21.7	quality_position_model=Inf	ref_cov=126/52	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=126/74
RA	546	.	NC_007779	3231832	1	.	G	bias_e_value=1110310	bias_p_value=0.238965	fisher_strand_p_value=0.0838876	frequency=8.439064e-03	genotype_quality=1157.3	ks_quality_p_value=0.758756	log10_base_likelihood=-8.52019	log10_qual_likelihood_position_model=1.52442	log10_strand_likelihood_position_model=1.0763	new_cov=2/0	polymorphism_quality=3.0	quality=3.0	quality_position_model=7.72351e-08	ref_cov=67/168	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=69/168
RA	547	.	NC_007779	3238317	1	.	C	bias_e_value=2902370	bias_p_value=0.624657	fisher_strand_p_value=0.279346	frequency=1.935387e-02	genotype_quality=674.1	ks_quality_p_value=0.969655	log10_base_likelihood=-11.743	log10_qual_likelihood_position_model=3.60255	log10_strand_likelihood_position_model=0.657145	new_cov=3/0	polymorphism_quality=6.3	quality=6.3	quality_position_model=1.88778e-09	ref_cov=91/61	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=94/61
RA	548	.	NC_007779	3238322	0	T	C	bias_e_value=771.658	bias_p_value=0.000166079	fisher_strand_p_value=1.36095e-05	frequency=9.892941e-02	genotype_quality=415.6	ks_quality_p_value=0.999855	log10_base_likelihood=-23.0422	log10_qual_likelihood_position_model=12.7979	log10_strand_likelihood_position_model=5.04288	new_cov=16/0	polymorphism_quality=17.8	quality=17.8	quality_position_model=4.28646e-07	ref_cov=63/76	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=79/76
RA	549	.	NC_007779	3238324	0	A	C	bias_e_value=3114.68	bias_p_value=0.000670353	fisher_strand_p_value=6.27926e-05	frequency=8.535337e-02	genotype_quality=421.5	ks_quality_p_value=1	log10_base_likelihood=-13.7243	log10_qual_likelihood_position_model=16.3188	log10_strand_likelihood_position_model=4.43397	new_cov=17/1	polymorphism_quality=8.4	quality=8.4	quality_position_model=Inf	ref_cov=63/77	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=80/78
RA	550	.	NC_007779	3243783	1	.	T	bias_e_value=4620300	bias_p_value=0.994397	fisher_strand_p_value=1	frequency=9.612083e-03	genotype_quality=1450.6	ks_quality_p_value=0.896028	log10_base_likelihood=-10.4066	log10_qual_likelihood_position_model=3.507	log10_strand_likelihood_position_model=0.392623	new_cov=1/2	polymorphism_quality=5.0	quality=5.0	quality_position_model=1.90981e-08	ref_cov=142/167	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=143/169
RA	551	.	NC_007779	3256891	0	A	.	bias_e_value=848668	bias_p_value=0.182653	fisher_strand_p_value=0.255188	frequency=1.012325e-02	genotype_quality=1197.0	ks_quality_p_value=0.17395	log10_base_likelihood=-7.53972	log10_qual_likelihood_position_model=2.48562	log10_strand_likelihood_position_model=0.780933	new_cov=3/0	polymorphism_quality=2.0	quality=2.0	quality_position_model=3.97893e-06	ref_cov=160/133	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=163/133
RA	552	.	NC_007779	3258181	0	G	C	bias_e_value=0.00196603	bias_p_value=4.23136e-10	fisher_strand_p_value=1.63784e-11	frequency=5.001020e-02	genotype_quality=692.7	ks_quality_p_value=1	log10_base_likelihood=-15.0915	log10_qual_likelihood_position_model=11.5717	log10_strand_likelihood_position_model=10.7857	new_cov=10/0	polymorphism_quality=9.7	quality=9.7	quality_position_model=Inf	ref_cov=10/167	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=20/167
RA	553	.	NC_007779	3259711	0	A	C	bias_e_value=6.30263e-15	bias_p_value=1.35647e-21	fisher_strand_p_value=2.55842e-23	frequency=9.703875e-02	genotype_quality=744.4	ks_quality_p_value=1	log10_base_likelihood=-9.174	log10_qual_likelihood_position_model=35.5007	log10_strand_likelihood_position_model=22.592	new_cov=0/44	polymorphism_quality=3.7	quality=3.7	quality_position_model=Inf	ref_cov=156/48	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=156/93
RA	554	.	NC_007779	3266843	0	C	G	bias_e_value=7.07425e-10	bias_p_value=1.52254e-16	fisher_strand_p_value=3.70107e-18	frequency=1.127911e-01	genotype_quality=631.0	ks_quality_p_value=1	log10_base_likelihood=-24.6348	log10_qual_likelihood_position_model=20.9741	log10_strand_likelihood_position_model=17.4317	new_cov=0/21	polymorphism_quality=19.4	quality=19.4	quality_position_model=Inf	ref_cov=139/14	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=139/35
RA	555	.	NC_007779	3274733	1	.	T	bias_e_value=2309780	bias_p_value=0.497119	fisher_strand_p_value=0.188951	frequency=8.546829e-03	genotype_quality=1139.8	ks_quality_p_value=0.978931	log10_base_likelihood=-7.54417	log10_qual_likelihood_position_model=2.50612	log10_strand_likelihood_position_model=0.72365	new_cov=2/0	polymorphism_quality=2.0	quality=2.0	quality_position_model=3.60269e-06	ref_cov=100/132	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=102/132
RA	556	.	NC_007779	3280326	0	A	C	bias_e_value=8.07099e-18	bias_p_value=1.73707e-24	fisher_strand_p_value=2.90475e-26	frequency=1.593127e-01	genotype_quality=639.7	ks_quality_p_value=1	log10_base_likelihood=-31.501	log10_qual_likelihood_position_model=36.3486	log10_strand_likelihood_position_model=25.5369	new_cov=0/52	polymorphism_quality=26.3	quality=26.3	quality_position_model=Inf	ref_cov=139/42	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=139/94
RA	557	.	NC_007779	3300073	0	T	G	bias_e_value=6.81463e-08	bias_p_value=1.46667e-14	fisher_strand_p_value=4.02388e-16	frequency=1.371512e-01	genotype_quality=552.5	ks_quality_p_value=1	log10_base_likelihood=-18.9999	log10_qual_likelihood_position_model=33.2523	log10_strand_likelihood_position_model=15.3954	new_cov=41/0	polymorphism_quality=13.7	quality=13.7	quality_position_model=Inf	ref_cov=56/104	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=98/105
RA	558	.	NC_007779	3310088	0	G	C	bias_e_value=0.0259081	bias_p_value=5.57602e-09	fisher_strand_p_value=2.409e-10	frequency=3.870392e-02	genotype_quality=732.8	ks_quality_p_value=1	log10_base_likelihood=-7.67778	log10_qual_likelihood_position_model=11.5694	log10_strand_likelihood_position_model=9.61816	new_cov=0/8	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=168/7	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=168/15
RA	559	.	NC_007779	3333612	0	T	G	bias_e_value=2.98521e-06	bias_p_value=6.42487e-13	fisher_strand_p_value=2.00153e-14	frequency=7.782125e-02	genotype_quality=689.1	ks_quality_p_value=0.985975	log10_base_likelihood=-31.6082	log10_qual_likelihood_position_model=17.2916	log10_strand_likelihood_position_model=13.6986	new_cov=15/0	polymorphism_quality=26.4	quality=26.4	quality_position_model=0.041729	ref_cov=15/162	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=30/162
RA	560	.	NC_007779	3350033	0	C	.	bias_e_value=877907	bias_p_value=0.188946	fisher_strand_p_value=0.254343	frequency=1.023293e-02	genotype_quality=1218.9	ks_quality_p_value=0.18253	log10_base_likelihood=-8.36101	log10_qual_likelihood_position_model=1.58471	log10_strand_likelihood_position_model=0.7875	new_cov=3/0	polymorphism_quality=2.9	quality=2.9	quality_position_model=6.54793e-08	ref_cov=157/132	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=161/132
RA	561	.	NC_007779	3350708	0	A	C	bias_e_value=9.14793e-14	bias_p_value=1.96885e-20	fisher_strand_p_value=3.91483e-22	frequency=1.312928e-01	genotype_quality=842.3	ks_quality_p_value=1	log10_base_likelihood=-23.3741	log10_qual_likelihood_position_model=39.7481	log10_strand_likelihood_position_model=21.4073	new_cov=0/56	polymorphism_quality=18.1	quality=18.1	quality_position_model=Inf	ref_cov=155/83	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=155/139
RA	562	.	NC_007779	3385700	1	.	T	bias_e_value=3895850	bias_p_value=0.838478	fisher_strand_p_value=1	frequency=6.249428e-03	genotype_quality=1540.9	ks_quality_p_value=0.488512	log10_base_likelihood=-7.90081	log10_qual_likelihood_position_model=1.30137	log10_strand_likelihood_position_model=0.300503	new_cov=1/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=3.13092e-08	ref_cov=152/166	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=153/167
RA	563	.	NC_007779	3385701	0	T	.	bias_e_value=4126940	bias_p_value=0.888215	fisher_strand_p_value=1	frequency=9.279251e-03	genotype_quality=1259.7	ks_quality_p_value=0.566123	log10_base_likelihood=-7.8265	log10_qual_likelihood_position_model=1.34546	log10_strand_likelihood_position_model=0.408085	new_cov=1/2	polymorphism_quality=2.3	quality=2.3	quality_position_model=5.35933e-08	ref_cov=154/166	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=155/168
RA	564	.	NC_007779	3389914	0	A	C	bias_e_value=6.11718e-14	bias_p_value=1.31656e-20	fisher_strand_p_value=2.59663e-22	frequency=1.168790e-01	genotype_quality=803.0	ks_quality_p_value=1	log10_base_likelihood=-18.8072	log10_qual_likelihood_position_model=40.4653	log10_strand_likelihood_position_model=21.6141	new_cov=0/62	polymorphism_quality=13.5	quality=13.5	quality_position_model=Inf	ref_cov=146/89	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=146/151
RA	565	.	NC_007779	3397405	0	A	C	bias_e_value=1.68468e-24	bias_p_value=3.62582e-31	fisher_strand_p_value=4.80782e-33	frequency=1.346107e-01	genotype_quality=773.2	ks_quality_p_value=1	log10_base_likelihood=-23.0635	log10_qual_likelihood_position_model=47.443	log10_strand_likelihood_position_model=32.3181	new_cov=0/57	polymorphism_quality=17.8	quality=17.8	quality_position_model=Inf	ref_cov=173/38	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=173/96
RA	566	.	NC_007779	3397813	0	C	G	frequency=1	genotype_quality=1223.0	new_cov=129/157	quality=1223.0	ref_cov=0/0	tot_cov=129/157
RA	567	.	NC_007779	3404070	0	T	G	bias_e_value=6.07355e-12	bias_p_value=1.30717e-18	fisher_strand_p_value=2.84121e-20	frequency=1.803994e-01	genotype_quality=603.0	ks_quality_p_value=1	log10_base_likelihood=-42.1114	log10_qual_likelihood_position_model=39.439	log10_strand_likelihood_position_model=19.5831	new_cov=57/0	polymorphism_quality=37.0	quality=37.0	quality_position_model=Inf	ref_cov=66/112	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=123/112
RA	568	.	NC_007779	3412753	0	C	T	bias_e_value=0.124019	bias_p_value=2.66919e-08	fisher_strand_p_value=1.24179e-09	frequency=5.551958e-02	genotype_quality=858.7	ks_quality_p_value=0.999415	log10_base_likelihood=-10.0907	log10_qual_likelihood_position_model=20.8425	log10_strand_likelihood_position_model=8.90595	new_cov=0/15	polymorphism_quality=4.7	quality=4.7	quality_position_model=Inf	ref_cov=169/50	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=169/65
RA	569	.	NC_007779	3412761	0	T	A	bias_e_value=0.00741324	bias_p_value=1.5955e-09	fisher_strand_p_value=6.52483e-11	frequency=6.406879e-02	genotype_quality=807.8	ks_quality_p_value=1	log10_base_likelihood=-11.5223	log10_qual_likelihood_position_model=20.1787	log10_strand_likelihood_position_model=10.1854	new_cov=0/16	polymorphism_quality=6.1	quality=6.1	quality_position_model=Inf	ref_cov=164/41	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=164/57
RA	570	.	NC_007779	3412772	0	A	C	bias_e_value=2.27653e-07	bias_p_value=4.89962e-14	fisher_strand_p_value=1.39161e-15	frequency=5.651474e-02	genotype_quality=736.5	ks_quality_p_value=1	log10_base_likelihood=-7.02467	log10_qual_likelihood_position_model=24.8833	log10_strand_likelihood_position_model=14.8565	new_cov=0/19	polymorphism_quality=1.5	quality=1.5	quality_position_model=Inf	ref_cov=164/23	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=164/42
RA	571	.	NC_007779	3421203	0	T	C	bias_e_value=0.000751203	bias_p_value=1.61677e-10	fisher_strand_p_value=6.02481e-12	frequency=4.774380e-02	genotype_quality=791.8	ks_quality_p_value=1	log10_base_likelihood=-6.29674	log10_qual_likelihood_position_model=20.7038	log10_strand_likelihood_position_model=11.2201	new_cov=0/15	polymorphism_quality=0.8	quality=0.8	quality_position_model=Inf	ref_cov=178/31	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=178/47
RA	572	.	NC_007779	3423128	1	.	G	bias_e_value=1599570	bias_p_value=0.344265	fisher_strand_p_value=0.112291	frequency=1.310062e-02	genotype_quality=808.7	ks_quality_p_value=0.945434	log10_base_likelihood=-12.814	log10_qual_likelihood_position_model=2.349	log10_strand_likelihood_position_model=0.949654	new_cov=3/0	polymorphism_quality=7.4	quality=7.4	quality_position_model=1.56365e-11	ref_cov=108/118	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=111/118
RA	573	.	NC_007779	3431073	0	C	A	bias_e_value=3957.41	bias_p_value=0.000851729	fisher_strand_p_value=8.18095e-05	frequency=6.220055e-02	genotype_quality=537.2	ks_quality_p_value=1	log10_base_likelihood=-6.48862	log10_qual_likelihood_position_model=9.97301	log10_strand_likelihood_position_model=4.0872	new_cov=0/11	polymorphism_quality=1.0	quality=1.0	quality_position_model=Inf	ref_cov=81/54	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=81/65
RA	574	.	NC_007779	3440270	0	C	A	bias_e_value=8.95339	bias_p_value=1.92698e-06	fisher_strand_p_value=1.13403e-07	frequency=6.441450e-02	genotype_quality=929.2	ks_quality_p_value=1	log10_base_likelihood=-14.6589	log10_qual_likelihood_position_model=18.443	log10_strand_likelihood_position_model=7.07071	new_cov=27/0	polymorphism_quality=9.3	quality=9.3	quality_position_model=Inf	ref_cov=147/133	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=179/133
RA	575	.	NC_007779	3440600	0	A	C	bias_e_value=4.45234e-14	bias_p_value=9.58247e-21	fisher_strand_p_value=1.87793e-22	frequency=8.297968e-02	genotype_quality=725.4	ks_quality_p_value=1	log10_base_likelihood=-5.86227	log10_qual_likelihood_position_model=35.3716	log10_strand_likelihood_position_model=21.7263	new_cov=0/44	polymorphism_quality=0.3	quality=0.3	quality_position_model=Inf	ref_cov=146/48	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=146/92
RA	576	.	NC_007779	3447052	0	T	C	bias_e_value=1139.44	bias_p_value=0.000245234	fisher_strand_p_value=2.08184e-05	frequency=3.847218e-02	genotype_quality=924.0	ks_quality_p_value=1	log10_base_likelihood=-7.68993	log10_qual_likelihood_position_model=11.0559	log10_strand_likelihood_position_model=4.90873	new_cov=0/18	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=134/144	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=135/162
RA	577	.	NC_007779	3447060	0	T	A	bias_e_value=95300.9	bias_p_value=0.020511	fisher_strand_p_value=0.00301439	frequency=2.948666e-02	genotype_quality=1072.7	ks_quality_p_value=1	log10_base_likelihood=-7.70309	log10_qual_likelihood_position_model=18.515	log10_strand_likelihood_position_model=2.76938	new_cov=0/11	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=139/171	reject=POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=139/183
RA	578	.	NC_007779	3447067	1	.	C	bias_e_value=3966450	bias_p_value=0.853673	fisher_strand_p_value=0.514552	frequency=9.470940e-03	genotype_quality=1405.8	ks_quality_p_value=0.991927	log10_base_likelihood=-6.36704	log10_qual_likelihood_position_model=2.72684	log10_strand_likelihood_position_model=0.459646	new_cov=0/2	polymorphism_quality=0.8	quality=0.8	quality_position_model=5.63067e-05	ref_cov=128/182	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=128/185
RA	579	.	NC_007779	3475527	0	T	G	bias_e_value=1.51156e-18	bias_p_value=3.25324e-25	fisher_strand_p_value=5.28947e-27	frequency=2.158151e-01	genotype_quality=643.4	ks_quality_p_value=1	log10_base_likelihood=-52.2934	log10_qual_likelihood_position_model=40.5303	log10_strand_likelihood_position_model=26.2856	new_cov=71/0	polymorphism_quality=47.2	quality=47.2	quality_position_model=Inf	ref_cov=63/129	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=134/129
RA	580	.	NC_007779	3475533	0	C	T	bias_e_value=5.50167e-14	bias_p_value=1.18409e-20	fisher_strand_p_value=2.33039e-22	frequency=2.237740e-01	genotype_quality=631.5	ks_quality_p_value=1	log10_base_likelihood=-85.5123	log10_qual_likelihood_position_model=59.2136	log10_strand_likelihood_position_model=21.8226	new_cov=63/0	polymorphism_quality=80.5	quality=80.5	quality_position_model=2.44076e-06	ref_cov=80/134	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=143/134
RA	581	.	NC_007779	3475539	0	G	T	bias_e_value=79.2188	bias_p_value=1.70497e-05	fisher_strand_p_value=1.16263e-06	frequency=6.847477e-02	genotype_quality=702.0	ks_quality_p_value=1	log10_base_likelihood=-15.7173	log10_qual_likelihood_position_model=12.8285	log10_strand_likelihood_position_model=5.93456	new_cov=14/0	polymorphism_quality=10.4	quality=10.4	quality_position_model=Inf	ref_cov=64/118	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=78/118
RA	582	.	NC_007779	3481746	0	T	G	bias_e_value=5.08458e-11	bias_p_value=1.09432e-17	fisher_strand_p_value=2.4965e-19	frequency=1.082387e-01	genotype_quality=945.0	ks_quality_p_value=1	log10_base_likelihood=-16.0423	log10_qual_likelihood_position_model=37.3349	log10_strand_likelihood_position_model=18.6027	new_cov=48/0	polymorphism_quality=10.7	quality=10.7	quality_position_model=Inf	ref_cov=96/172	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=147/172
RA	583	.	NC_007779	3484372	0	A	C	bias_e_value=8.00036e-08	bias_p_value=1.72187e-14	fisher_strand_p_value=4.7455e-16	frequency=3.989983e-02	genotype_quality=803.4	ks_quality_p_value=1	log10_base_likelihood=-5.95868	log10_qual_likelihood_position_model=27.9152	log10_strand_likelihood_position_model=15.3237	new_cov=0/31	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=164/62	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=164/93
RA	584	.	NC_007779	3498149	0	T	G	bias_e_value=0.000626824	bias_p_value=1.34907e-10	fisher_strand_p_value=4.99229e-12	frequency=5.006266e-02	genotype_quality=638.4	ks_quality_p_value=1	log10_base_likelihood=-10.3962	log10_qual_likelihood_position_model=17.1791	log10_strand_likelihood_position_model=11.3017	new_cov=13/0	polymorphism_quality=5.0	quality=5.0	quality_position_model=Inf	ref_cov=16/145	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=29/145
RA	585	.	NC_007779	3499066	0	A	C	bias_e_value=3.98671e-08	bias_p_value=8.58034e-15	fisher_strand_p_value=2.319e-16	frequency=9.362125e-02	genotype_quality=772.5	ks_quality_p_value=1	log10_base_likelihood=-25.5517	log10_qual_likelihood_position_model=29.3292	log10_strand_likelihood_position_model=15.6347	new_cov=0/23	polymorphism_quality=20.3	quality=20.3	quality_position_model=Inf	ref_cov=168/33	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=168/56
RA	586	.	NC_007779	3520391	0	C	G	bias_e_value=0.00179803	bias_p_value=3.86978e-10	fisher_strand_p_value=1.49251e-11	frequency=5.848694e-02	genotype_quality=643.5	ks_quality_p_value=1	log10_base_likelihood=-18.1044	log10_qual_likelihood_position_model=10.6063	log10_strand_likelihood_position_model=10.8261	new_cov=10/0	polymorphism_quality=12.8	quality=12.8	quality_position_model=Inf	ref_cov=8/146	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=18/146
RA	587	.	NC_007779	3530315	0	T	G	bias_e_value=534863	bias_p_value=0.115115	fisher_strand_p_value=0.0244307	frequency=2.186394e-02	genotype_quality=1109.7	ks_quality_p_value=1	log10_base_likelihood=-5.99937	log10_qual_likelihood_position_model=14.2671	log10_strand_likelihood_position_model=1.73346	new_cov=2/8	polymorphism_quality=0.5	quality=0.5	quality_position_model=Inf	ref_cov=166/124	reject=EVALUE,SURROUNDING_HOMOPOLYMER	tot_cov=168/132
RA	588	.	NC_007779	3533717	0	T	.	bias_e_value=3577370	bias_p_value=0.769934	fisher_strand_p_value=1	frequency=1.090050e-02	genotype_quality=1084.8	ks_quality_p_value=0.403749	log10_base_likelihood=-8.02245	log10_qual_likelihood_position_model=1.89481	log10_strand_likelihood_position_model=0.389937	new_cov=1/2	polymorphism_quality=2.5	quality=2.5	quality_position_model=1.19102e-07	ref_cov=124/148	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=125/150
RA	589	.	NC_007779	3543542	0	G	T	bias_e_value=5.28593e-05	bias_p_value=1.13766e-11	fisher_strand_p_value=3.84515e-13	frequency=9.307146e-02	genotype_quality=820.6	ks_quality_p_value=1	log10_base_likelihood=-20.6459	log10_qual_likelihood_position_model=24.5984	log10_strand_likelihood_position_model=12.4151	new_cov=0/31	polymorphism_quality=15.4	quality=15.4	quality_position_model=Inf	ref_cov=143/79	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=143/110
RA	590	.	NC_007779	3543547	0	A	C	bias_e_value=2.21148e-30	bias_p_value=4.75962e-37	fisher_strand_p_value=5.34036e-39	frequency=2.817340e-01	genotype_quality=663.4	ks_quality_p_value=1	log10_base_likelihood=-70.346	log10_qual_likelihood_position_model=69.9465	log10_strand_likelihood_position_model=38.2763	new_cov=0/99	polymorphism_quality=65.3	quality=65.3	quality_position_model=Inf	ref_cov=147/58	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=147/157
RA	591	.	NC_007779	3571074	0	A	G	bias_e_value=0.0486362	bias_p_value=1.04677e-08	fisher_strand_p_value=4.65478e-10	frequency=6.569529e-02	genotype_quality=727.7	ks_quality_p_value=1	log10_base_likelihood=-7.04111	log10_qual_likelihood_position_model=18.8528	log10_strand_likelihood_position_model=9.3321	new_cov=23/0	polymorphism_quality=1.5	quality=1.5	quality_position_model=Inf	ref_cov=77/137	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=100/137
RA	592	.	NC_007779	3576400	1	.	A	bias_e_value=4342540	bias_p_value=0.934617	fisher_strand_p_value=1	frequency=6.289482e-03	genotype_quality=1544.7	ks_quality_p_value=0.660909	log10_base_likelihood=-7.94866	log10_qual_likelihood_position_model=1.14979	log10_strand_likelihood_position_model=0.307305	new_cov=1/1	polymorphism_quality=2.5	quality=2.5	quality_position_model=1.981e-08	ref_cov=137/179	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=138/180
RA	593	.	NC_007779	3576401	0	A	.	bias_e_value=1685660	bias_p_value=0.362794	fisher_strand_p_value=0.136006	frequency=1.237583e-02	genotype_quality=1301.1	ks_quality_p_value=0.842391	log10_base_likelihood=-10.9618	log10_qual_likelihood_position_model=1.4414	log10_strand_likelihood_position_model=0.99324	new_cov=0/4	polymorphism_quality=5.5	quality=5.5	quality_position_model=1.60363e-10	ref_cov=140/179	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=140/183
RA	594	.	NC_007779	3583865	0	C	A	bias_e_value=1.63945	bias_p_value=3.52848e-07	fisher_strand_p_value=1.87779e-08	frequency=5.247307e-02	genotype_quality=994.8	ks_quality_p_value=1	log10_base_likelihood=-11.5307	log10_qual_likelihood_position_model=20.1855	log10_strand_likelihood_position_model=7.73801	new_cov=25/1	polymorphism_quality=6.1	quality=6.1	quality_position_model=Inf	ref_cov=116/163	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=143/164
RA	595	.	NC_007779	3603950	0	A	C	bias_e_value=5.62202e-11	bias_p_value=1.20999e-17	fisher_strand_p_value=2.76687e-19	frequency=1.037192e-01	genotype_quality=858.1	ks_quality_p_value=1	log10_base_likelihood=-19.0308	log10_qual_likelihood_position_model=44.4694	log10_strand_likelihood_position_model=18.558	new_cov=0/42	polymorphism_quality=13.7	quality=13.7	quality_position_model=Inf	ref_cov=165/73	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=165/115
RA	596	.	NC_007779	3609441	0	T	G	bias_e_value=4.25784e-20	bias_p_value=9.16387e-27	fisher_strand_p_value=1.40699e-28	frequency=1.194272e-01	genotype_quality=827.5	ks_quality_p_value=1	log10_base_likelihood=-16.8939	log10_qual_likelihood_position_model=42.0446	log10_strand_likelihood_position_model=27.8517	new_cov=61/0	polymorphism_quality=11.6	quality=11.6	quality_position_model=Inf	ref_cov=60/165	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=122/166
RA	597	.	NC_007779	3615064	0	C	A	bias_e_value=534.557	bias_p_value=0.000115049	fisher_strand_p_value=9.12786e-06	frequency=3.618336e-02	genotype_quality=1014.3	ks_quality_p_value=1	log10_base_likelihood=-10.2912	log10_qual_likelihood_position_model=13.2263	log10_strand_likelihood_position_model=5.03963	new_cov=15/0	polymorphism_quality=4.9	quality=4.9	quality_position_model=Inf	ref_cov=124/154	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=139/154
RA	598	.	NC_007779	3627544	1	.	T	bias_e_value=3285390	bias_p_value=0.707092	fisher_strand_p_value=0.621134	frequency=1.027393e-02	genotype_quality=1400.0	ks_quality_p_value=0.547829	log10_base_likelihood=-12.3958	log10_qual_likelihood_position_model=3.01419	log10_strand_likelihood_position_model=0.427505	new_cov=2/1	polymorphism_quality=7.0	quality=7.0	quality_position_model=5.86167e-11	ref_cov=143/146	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=145/147
RA	599	.	NC_007779	3632227	0	A	C	bias_e_value=13482.9	bias_p_value=0.00290184	fisher_strand_p_value=0.000323504	frequency=1.573849e-02	genotype_quality=743.5	ks_quality_p_value=0.991759	log10_base_likelihood=-6.13149	log10_qual_likelihood_position_model=4.12694	log10_strand_likelihood_position_model=3.49012	new_cov=0/3	polymorphism_quality=0.6	quality=0.6	quality_position_model=Inf	ref_cov=176/11	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=176/14
RA	600	.	NC_007779	3676780	0	A	C	bias_e_value=0.000783202	bias_p_value=1.68564e-10	fisher_strand_p_value=6.29161e-12	frequency=8.109140e-02	genotype_quality=828.5	ks_quality_p_value=1	log10_base_likelihood=-14.2079	log10_qual_likelihood_position_model=24.7102	log10_strand_likelihood_position_model=11.2012	new_cov=0/31	polymorphism_quality=8.8	quality=8.8	quality_position_model=Inf	ref_cov=146/97	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=146/129
RA	601	.	NC_007779	3684749	0	C	A	bias_e_value=2415490	bias_p_value=0.519869	fisher_strand_p_value=0.247678	frequency=9.329796e-03	genotype_quality=1338.7	ks_quality_p_value=0.802446	log10_base_likelihood=-5.66507	log10_qual_likelihood_position_model=3.35084	log10_strand_likelihood_position_model=0.899025	new_cov=3/0	polymorphism_quality=0.1	quality=0.1	quality_position_model=0.00466463	ref_cov=158/159	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=161/159
RA	602	.	NC_007779	3686205	0	A	.	bias_e_value=4421980	bias_p_value=0.951714	fisher_strand_p_value=1	frequency=1.093960e-02	genotype_quality=1091.8	ks_quality_p_value=0.705792	log10_base_likelihood=-7.89486	log10_qual_likelihood_position_model=1.86277	log10_strand_likelihood_position_model=0.379967	new_cov=2/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=1.46065e-07	ref_cov=152/119	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=154/120
RA	603	.	NC_007779	3688858	0	A	C	bias_e_value=6.41733e-30	bias_p_value=1.38116e-36	fisher_strand_p_value=1.56864e-38	frequency=1.984653e-01	genotype_quality=653.3	ks_quality_p_value=1	log10_base_likelihood=-49.0318	log10_qual_likelihood_position_model=51.5248	log10_strand_likelihood_position_model=37.8045	new_cov=0/60	polymorphism_quality=43.9	quality=43.9	quality_position_model=Inf	ref_cov=159/22	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=159/82
RA	604	.	NC_007779	3701118	0	G	T	bias_e_value=12.6789	bias_p_value=2.72881e-06	fisher_strand_p_value=1.64165e-07	frequency=4.290199e-02	genotype_quality=951.3	ks_quality_p_value=1	log10_base_likelihood=-7.3481	log10_qual_likelihood_position_model=15.9416	log10_strand_likelihood_position_model=6.78472	new_cov=0/18	polymorphism_quality=1.8	quality=1.8	quality_position_model=Inf	ref_cov=158/105	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=158/123
RA	605	.	NC_007779	3705119	1	.	C	bias_e_value=3900000	bias_p_value=0.839371	fisher_strand_p_value=1	frequency=6.577492e-03	genotype_quality=1461.6	ks_quality_p_value=0.489761	log10_base_likelihood=-6.75783	log10_qual_likelihood_position_model=2.81819	log10_strand_likelihood_position_model=0.300804	new_cov=1/1	polymorphism_quality=1.2	quality=1.2	quality_position_model=1.84469e-05	ref_cov=143/159	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=144/160
RA	606	.	NC_007779	3711109	0	C	A	bias_e_value=79.0774	bias_p_value=1.70193e-05	fisher_strand_p_value=1.1604e-06	frequency=3.367805e-02	genotype_quality=984.9	ks_quality_p_value=1	log10_base_likelihood=-5.56619	log10_qual_likelihood_position_model=14.6313	log10_strand_likelihood_position_model=5.93539	new_cov=17/0	polymorphism_quality=0.0	quality=0.0	quality_position_model=Inf	ref_cov=124/164	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=141/165
RA	607	.	NC_007779	3727557	0	A	G	bias_e_value=2.37524e-05	bias_p_value=5.11207e-12	fisher_strand_p_value=1.68081e-13	frequency=7.484579e-02	genotype_quality=613.8	ks_quality_p_value=1	log10_base_likelihood=-12.414	log10_qual_likelihood_position_model=19.0677	log10_strand_likelihood_position_model=12.7745	new_cov=15/0	polymorphism_quality=7.0	quality=7.0	quality_position_model=Inf	ref_cov=17/150	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=32/150
RA	608	.	NC_007779	3728146	1	.	T	bias_e_value=255240	bias_p_value=0.0549338	fisher_strand_p_value=0.0102588	frequency=2.234650e-02	genotype_quality=831.2	ks_quality_p_value=0.951176	log10_base_likelihood=-17.9303	log10_qual_likelihood_position_model=2.87272	log10_strand_likelihood_position_model=1.98891	new_cov=4/0	polymorphism_quality=12.6	quality=12.6	quality_position_model=3.75299e-15	ref_cov=54/121	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=58/121
RA	609	.	NC_007779	3728155	0	T	C	bias_e_value=0.511504	bias_p_value=1.10088e-07	fisher_strand_p_value=5.49926e-09	frequency=5.491114e-02	genotype_quality=505.5	ks_quality_p_value=1	log10_base_likelihood=-8.94612	log10_qual_likelihood_position_model=11.8745	log10_strand_likelihood_position_model=8.2597	new_cov=10/0	polymorphism_quality=3.5	quality=3.5	quality_position_model=Inf	ref_cov=17/127	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=27/127
RA	610	.	NC_007779	3731041	1	.	T	bias_e_value=942492	bias_p_value=0.202846	fisher_strand_p_value=0.710454	frequency=2.602196e-02	genotype_quality=1242.4	ks_quality_p_value=0.07182	log10_base_likelihood=-31.296	log10_qual_likelihood_position_model=6.04117	log10_strand_likelihood_position_model=0.587876	new_cov=4/3	polymorphism_quality=26.1	quality=26.1	quality_position_model=6.93973e-27	ref_cov=123/139	reject=INDEL_HOMOPOLYMER	tot_cov=127/142
RA	611	.	NC_007779	3732310	0	G	T	bias_e_value=0.694717	bias_p_value=1.49519e-07	fisher_strand_p_value=7.59126e-09	frequency=8.252573e-02	genotype_quality=912.0	ks_quality_p_value=1	log10_base_likelihood=-21.7335	log10_qual_likelihood_position_model=21.0116	log10_strand_likelihood_position_model=8.23159	new_cov=1/30	polymorphism_quality=16.5	quality=16.5	quality_position_model=Inf	ref_cov=141/118	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=142/148
RA	612	.	NC_007779	3734364	1	.	A	bias_e_value=983152	bias_p_value=0.211598	fisher_strand_p_value=0.0620905	frequency=1.543236e-02	genotype_quality=1551.4	ks_quality_p_value=0.869609	log10_base_likelihood=-21.3651	log10_qual_likelihood_position_model=2.75666	log10_strand_likelihood_position_model=1.41279	new_cov=0/5	polymorphism_quality=16.1	quality=16.1	quality_position_model=2.45141e-19	ref_cov=154/165	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=154/170
RA	613	.	NC_007779	3734365	0	A	.	bias_e_value=3974400	bias_p_value=0.855384	fisher_strand_p_value=0.607522	frequency=9.051323e-03	genotype_quality=1319.4	ks_quality_p_value=0.844333	log10_base_likelihood=-7.33825	log10_qual_likelihood_position_model=2.16956	log10_strand_likelihood_position_model=0.445814	new_cov=2/1	polymorphism_quality=1.8	quality=1.8	quality_position_model=1.34911e-06	ref_cov=156/172	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=158/173
RA	614	.	NC_007779	3741461	0	A	T	bias_e_value=901.925	bias_p_value=0.000194115	fisher_strand_p_value=1.61294e-05	frequency=4.893637e-02	genotype_quality=937.1	ks_quality_p_value=1	log10_base_likelihood=-11.0207	log10_qual_likelihood_position_model=22.5991	log10_strand_likelihood_position_model=4.79238	new_cov=15/0	polymorphism_quality=5.6	quality=5.6	quality_position_model=Inf	ref_cov=120/139	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=135/139
RA	615	.	NC_007779	3746911	0	G	A	frequency=1	genotype_quality=3.8	new_cov=0/1	quality=3.8	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	616	.	NC_007779	3750122	0	C	.	bias_e_value=91649.3	bias_p_value=0.0197251	fisher_strand_p_value=0.574231	frequency=9.592476e-01	genotype_quality=1457.9	ks_quality_p_value=0.00501457	log10_base_likelihood=-63.7563	log10_qual_likelihood_position_model=8.5142	log10_strand_likelihood_position_model=0.772855	new_cov=151/155	polymorphism_quality=58.7	quality=58.7	quality_position_model=7.39711e-57	ref_cov=5/8	tot_cov=156/163
RA	617	.	NC_007779	3750123	0	C	T	bias_e_value=3948740	bias_p_value=0.849861	fisher_strand_p_value=0.574231	frequency=4.065609e-02	genotype_quality=1232.8	ks_quality_p_value=0.879048	log10_base_likelihood=-27.8351	log10_qual_likelihood_position_model=9.21433	log10_strand_likelihood_position_model=0.772855	new_cov=5/8	polymorphism_quality=22.6	quality=22.6	quality_position_model=5.3612e-20	ref_cov=151/155	tot_cov=156/163
RA	618	.	NC_007779	3761469	0	A	C	bias_e_value=1.30362e-07	bias_p_value=2.8057e-14	fisher_strand_p_value=7.8411e-16	frequency=5.206633e-02	genotype_quality=628.5	ks_quality_p_value=1	log10_base_likelihood=-8.9669	log10_qual_likelihood_position_model=18.921	log10_strand_likelihood_position_model=15.1056	new_cov=0/15	polymorphism_quality=3.5	quality=3.5	quality_position_model=Inf	ref_cov=150/9	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=150/24
RA	619	.	NC_007779	3762475	0	T	G	bias_e_value=4.24858e-11	bias_p_value=9.14395e-18	fisher_strand_p_value=2.07732e-19	frequency=1.578703e-01	genotype_quality=642.9	ks_quality_p_value=1	log10_base_likelihood=-31.9893	log10_qual_likelihood_position_model=35.8985	log10_strand_likelihood_position_model=18.6825	new_cov=41/0	polymorphism_quality=26.8	quality=26.8	quality_position_model=Inf	ref_cov=52/133	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=93/133
RA	620	.	NC_007779	3763528	0	A	C	bias_e_value=0.115307	bias_p_value=2.48168e-08	fisher_strand_p_value=1.14979e-09	frequency=2.522373e-02	genotype_quality=626.4	ks_quality_p_value=1	log10_base_likelihood=-5.65196	log10_qual_likelihood_position_model=11.1391	log10_strand_likelihood_position_model=8.93938	new_cov=0/7	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=157/5	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=157/12
RA	621	.	NC_007779	3772840	0	A	.	bias_e_value=130838	bias_p_value=0.0281595	fisher_strand_p_value=0.105638	frequency=9.055138e-03	genotype_quality=1331.1	ks_quality_p_value=0.0414504	log10_base_likelihood=-7.87431	log10_qual_likelihood_position_model=1.69286	log10_strand_likelihood_position_model=0.976182	new_cov=0/3	polymorphism_quality=2.4	quality=2.4	quality_position_model=4.24702e-07	ref_cov=174/154	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=174/157
RA	622	.	NC_007779	3776590	1	.	T	bias_e_value=2434630	bias_p_value=0.523991	fisher_strand_p_value=0.201846	frequency=6.430626e-03	genotype_quality=1525.6	ks_quality_p_value=0.99734	log10_base_likelihood=-7.08368	log10_qual_likelihood_position_model=2.96709	log10_strand_likelihood_position_model=0.694979	new_cov=0/2	polymorphism_quality=1.6	quality=1.6	quality_position_model=3.12777e-05	ref_cov=171/138	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=171/140
RA	623	.	NC_007779	3788380	0	G	T	bias_e_value=588.042	bias_p_value=0.000126561	fisher_strand_p_value=1.01244e-05	frequency=3.709316e-02	genotype_quality=953.8	ks_quality_p_value=1	log10_base_likelihood=-7.95239	log10_qual_likelihood_position_model=15.7224	log10_strand_likelihood_position_model=5.18727	new_cov=0/19	polymorphism_quality=2.5	quality=2.5	quality_position_model=Inf	ref_cov=132/141	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=132/161
RA	624	.	NC_007779	3789663	0	T	.	bias_e_value=2250560	bias_p_value=0.484374	fisher_strand_p_value=0.604006	frequency=1.033592e-02	genotype_quality=1131.6	ks_quality_p_value=0.293885	log10_base_likelihood=-7.92903	log10_qual_likelihood_position_model=2.19545	log10_strand_likelihood_position_model=0.450616	new_cov=1/2	polymorphism_quality=2.4	quality=2.4	quality_position_model=3.52688e-07	ref_cov=152/135	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=153/137
RA	625	.	NC_007779	3813810	0	T	G	bias_e_value=6.43407e-17	bias_p_value=1.38476e-23	fisher_strand_p_value=2.40039e-25	frequency=9.767151e-02	genotype_quality=750.5	ks_quality_p_value=1	log10_base_likelihood=-12.2185	log10_qual_likelihood_position_model=33.655	log10_strand_likelihood_position_model=24.6197	new_cov=39/0	polymorphism_quality=6.8	quality=6.8	quality_position_model=Inf	ref_cov=31/162	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=70/162
RA	626	.	NC_007779	3820146	0	T	G	bias_e_value=0.0543292	bias_p_value=1.16929e-08	fisher_strand_p_value=5.22656e-10	frequency=7.821035e-02	genotype_quality=742.1	ks_quality_p_value=1	log10_base_likelihood=-11.4278	log10_qual_likelihood_position_model=24.5363	log10_strand_likelihood_position_model=9.29041	new_cov=25/1	polymorphism_quality=6.0	quality=6.0	quality_position_model=Inf	ref_cov=73/139	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=98/140
RA	627	.	NC_007779	3824921	0	A	C	bias_e_value=8.33144e-05	bias_p_value=1.79312e-11	fisher_strand_p_value=6.1586e-13	frequency=6.457853e-02	genotype_quality=835.9	ks_quality_p_value=1	log10_base_likelihood=-7.29022	log10_qual_likelihood_position_model=29.2001	log10_strand_likelihood_position_model=12.2105	new_cov=0/29	polymorphism_quality=1.8	quality=1.8	quality_position_model=Inf	ref_cov=153/79	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=153/108
RA	628	.	NC_007779	3828029	0	G	T	bias_e_value=1.23137e-05	bias_p_value=2.65019e-12	fisher_strand_p_value=9.08215e-14	frequency=9.550571e-02	genotype_quality=990.9	ks_quality_p_value=0.938471	log10_base_likelihood=-35.0586	log10_qual_likelihood_position_model=36.8654	log10_strand_likelihood_position_model=13.0418	new_cov=34/0	polymorphism_quality=29.9	quality=29.9	quality_position_model=Inf	ref_cov=105/173	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=139/173
RA	629	.	NC_007779	3841756	0	A	.	bias_e_value=4515520	bias_p_value=0.971846	fisher_strand_p_value=1	frequency=1.412582e-02	genotype_quality=1156.1	ks_quality_p_value=0.772291	log10_base_likelihood=-11.1566	log10_qual_likelihood_position_model=1.69082	log10_strand_likelihood_position_model=0.424731	new_cov=2/2	polymorphism_quality=5.7	quality=5.7	quality_position_model=4.77616e-11	ref_cov=146/133	reject=INDEL_HOMOPOLYMER	tot_cov=148/135
RA	630	.	NC_007779	3843373	1	.	A	bias_e_value=3795120	bias_p_value=0.8168	fisher_strand_p_value=0.521627	frequency=9.090424e-03	genotype_quality=1078.0	ks_quality_p_value=0.880861	log10_base_likelihood=-8.29318	log10_qual_likelihood_position_model=1.5386	log10_strand_likelihood_position_model=0.43191	new_cov=2/0	polymorphism_quality=2.8	quality=2.8	quality_position_model=2.9592e-08	ref_cov=132/86	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=134/86
RA	631	.	NC_007779	3845596	0	G	T	bias_e_value=0.188002	bias_p_value=4.04625e-08	fisher_strand_p_value=1.92031e-09	frequency=5.197811e-02	genotype_quality=1131.9	ks_quality_p_value=1	log10_base_likelihood=-16.1302	log10_qual_likelihood_position_model=17.8568	log10_strand_likelihood_position_model=8.71663	new_cov=0/25	polymorphism_quality=10.8	quality=10.8	quality_position_model=Inf	ref_cov=182/135	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=182/161
RA	632	.	NC_007779	3846240	0	G	C	bias_e_value=1.01064e-13	bias_p_value=2.17515e-20	fisher_strand_p_value=4.33379e-22	frequency=1.336861e-01	genotype_quality=634.1	ks_quality_p_value=1	log10_base_likelihood=-40.8638	log10_qual_likelihood_position_model=21.1866	log10_strand_likelihood_position_model=21.3631	new_cov=0/29	polymorphism_quality=35.7	quality=35.7	quality_position_model=Inf	ref_cov=155/21	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=155/50
RA	633	.	NC_007779	3855255	0	C	A	bias_e_value=1.76584	bias_p_value=3.80049e-07	fisher_strand_p_value=2.04476e-08	frequency=3.991127e-02	genotype_quality=781.9	ks_quality_p_value=0.993287	log10_base_likelihood=-18.5392	log10_qual_likelihood_position_model=8.69193	log10_strand_likelihood_position_model=7.68936	new_cov=0/8	polymorphism_quality=13.2	quality=13.2	quality_position_model=0.000703863	ref_cov=174/17	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=175/25
RA	634	.	NC_007779	3855276	1	.	T	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=6.556511e-03	genotype_quality=1495.9	ks_quality_p_value=0.999308	log10_base_likelihood=-7.19828	log10_qual_likelihood_position_model=2.49883	log10_strand_likelihood_position_model=0.306043	new_cov=1/1	polymorphism_quality=1.7	quality=1.7	quality_position_model=2.97846e-06	ref_cov=170/133	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=171/134
RA	635	.	NC_007779	3859254	1	.	T	bias_e_value=314215	bias_p_value=0.0676265	fisher_strand_p_value=0.0154075	frequency=1.619434e-02	genotype_quality=1179.7	ks_quality_p_value=0.816499	log10_base_likelihood=-17.1188	log10_qual_likelihood_position_model=2.33589	log10_strand_likelihood_position_model=1.81227	new_cov=4/0	polymorphism_quality=11.8	quality=11.8	quality_position_model=4.72055e-15	ref_cov=84/159	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=88/159
RA	636	.	NC_007779	3859258	1	.	T	bias_e_value=1452990	bias_p_value=0.312718	fisher_strand_p_value=0.0925075	frequency=8.729935e-03	genotype_quality=1067.3	ks_quality_p_value=1	log10_base_likelihood=-5.94123	log10_qual_likelihood_position_model=3.37535	log10_strand_likelihood_position_model=1.03382	new_cov=2/0	polymorphism_quality=0.4	quality=0.4	quality_position_model=0.00344573	ref_cov=68/159	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=70/159
RA	637	.	NC_007779	3859258	2	.	C	bias_e_value=1435370	bias_p_value=0.308925	fisher_strand_p_value=0.0925075	frequency=8.732796e-03	genotype_quality=1071.7	ks_quality_p_value=0.982836	log10_base_likelihood=-6.92257	log10_qual_likelihood_position_model=3.63859	log10_strand_likelihood_position_model=1.03382	new_cov=2/0	polymorphism_quality=1.4	quality=1.4	quality_position_model=0.000558909	ref_cov=68/159	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=70/159
RA	638	.	NC_007779	3859259	0	C	T	bias_e_value=68.7724	bias_p_value=1.48014e-05	fisher_strand_p_value=9.98982e-07	frequency=3.820419e-02	genotype_quality=847.7	ks_quality_p_value=1	log10_base_likelihood=-6.0039	log10_qual_likelihood_position_model=11.8417	log10_strand_likelihood_position_model=6.00044	new_cov=11/0	polymorphism_quality=0.5	quality=0.5	quality_position_model=Inf	ref_cov=59/163	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=70/163
RA	639	.	NC_007779	3859263	0	T	C	bias_e_value=6.2673e-06	bias_p_value=1.34887e-12	fisher_strand_p_value=4.24294e-14	frequency=8.333158e-02	genotype_quality=663.5	ks_quality_p_value=1	log10_base_likelihood=-24.6767	log10_qual_likelihood_position_model=18.5916	log10_strand_likelihood_position_model=13.3723	new_cov=20/0	polymorphism_quality=19.4	quality=19.4	quality_position_model=Inf	ref_cov=35/165	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=55/165
RA	640	.	NC_007779	3859265	0	A	C	bias_e_value=0.000597458	bias_p_value=1.28587e-10	fisher_strand_p_value=4.95569e-12	frequency=7.836723e-02	genotype_quality=604.1	ks_quality_p_value=0.958422	log10_base_likelihood=-28.8824	log10_qual_likelihood_position_model=12.0173	log10_strand_likelihood_position_model=11.3097	new_cov=19/1	polymorphism_quality=23.7	quality=23.7	quality_position_model=1.83992e-07	ref_cov=37/165	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=56/166
RA	641	.	NC_007779	3859270	0	G	C	bias_e_value=0.0479194	bias_p_value=1.03134e-08	fisher_strand_p_value=4.58301e-10	frequency=5.716801e-02	genotype_quality=800.5	ks_quality_p_value=1	log10_base_likelihood=-23.8888	log10_qual_likelihood_position_model=10.7471	log10_strand_likelihood_position_model=9.33885	new_cov=13/0	polymorphism_quality=18.6	quality=18.6	quality_position_model=1.23939e-05	ref_cov=32/164	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=45/164
RA	642	.	NC_007779	3859271	0	G	C	bias_e_value=3325.47	bias_p_value=0.00071572	fisher_strand_p_value=6.74991e-05	frequency=2.653599e-02	genotype_quality=818.2	ks_quality_p_value=1	log10_base_likelihood=-7.91059	log10_qual_likelihood_position_model=8.63924	log10_strand_likelihood_position_model=4.1707	new_cov=6/0	polymorphism_quality=2.4	quality=2.4	quality_position_model=Inf	ref_cov=38/164	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=44/164
RA	643	.	NC_007779	3859275	0	T	C	bias_e_value=2523.71	bias_p_value=0.000543161	fisher_strand_p_value=4.99028e-05	frequency=3.945637e-02	genotype_quality=719.5	ks_quality_p_value=0.997876	log10_base_likelihood=-12.2199	log10_qual_likelihood_position_model=9.42271	log10_strand_likelihood_position_model=4.31444	new_cov=8/1	polymorphism_quality=6.8	quality=6.8	quality_position_model=Inf	ref_cov=42/158	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=50/159
RA	644	.	NC_007779	3859381	0	T	G	bias_e_value=12.7192	bias_p_value=2.73746e-06	fisher_strand_p_value=1.64719e-07	frequency=5.528975e-02	genotype_quality=481.0	ks_quality_p_value=1	log10_base_likelihood=-6.13868	log10_qual_likelihood_position_model=14.3839	log10_strand_likelihood_position_model=6.79521	new_cov=3/10	polymorphism_quality=0.6	quality=0.6	quality_position_model=Inf	ref_cov=128/13	reject=EVALUE,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=133/23
RA	645	.	NC_007779	3859383	0	A	G	bias_e_value=0.058908	bias_p_value=1.26784e-08	fisher_strand_p_value=5.6886e-10	frequency=7.095909e-02	genotype_quality=471.1	ks_quality_p_value=1	log10_base_likelihood=-11.4133	log10_qual_likelihood_position_model=14.8659	log10_strand_likelihood_position_model=9.24812	new_cov=1/11	polymorphism_quality=6.0	quality=6.0	quality_position_model=Inf	ref_cov=126/11	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=127/22
RA	646	.	NC_007779	3864410	0	G	C	bias_e_value=11.8281	bias_p_value=2.54569e-06	fisher_strand_p_value=1.53234e-07	frequency=4.539204e-02	genotype_quality=755.6	ks_quality_p_value=0.995016	log10_base_likelihood=-7.22815	log10_qual_likelihood_position_model=14.1952	log10_strand_likelihood_position_model=6.81465	new_cov=0/13	polymorphism_quality=1.7	quality=1.7	quality_position_model=Inf	ref_cov=152/58	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=152/71
RA	647	.	NC_007779	3866109	0	G	T	bias_e_value=188.684	bias_p_value=4.06093e-05	fisher_strand_p_value=2.962e-06	frequency=3.078938e-02	genotype_quality=967.2	ks_quality_p_value=0.998463	log10_base_likelihood=-6.70581	log10_qual_likelihood_position_model=14.2798	log10_strand_likelihood_position_model=5.52841	new_cov=0/17	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=157/132	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=157/149
RA	648	.	NC_007779	3873374	1	.	T	bias_e_value=2664050	bias_p_value=0.573366	fisher_strand_p_value=1	frequency=7.193565e-03	genotype_quality=1349.7	ks_quality_p_value=0.233654	log10_base_likelihood=-7.84261	log10_qual_likelihood_position_model=1.26994	log10_strand_likelihood_position_model=0.299487	new_cov=1/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=3.32864e-08	ref_cov=137/139	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=138/140
RA	649	.	NC_007779	3873375	0	T	.	bias_e_value=634308	bias_p_value=0.136518	fisher_strand_p_value=0.370528	frequency=1.422501e-02	genotype_quality=1097.7	ks_quality_p_value=0.0819843	log10_base_likelihood=-10.8939	log10_qual_likelihood_position_model=2.26949	log10_strand_likelihood_position_model=0.605212	new_cov=3/1	polymorphism_quality=5.5	quality=5.5	quality_position_model=5.31842e-10	ref_cov=137/140	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=140/141
RA	650	.	NC_007779	3891224	0	G	C	bias_e_value=2564.88	bias_p_value=0.000552022	fisher_strand_p_value=5.06919e-05	frequency=2.990437e-02	genotype_quality=752.4	ks_quality_p_value=1	log10_base_likelihood=-7.50904	log10_qual_likelihood_position_model=8.5439	log10_strand_likelihood_position_model=4.29506	new_cov=0/7	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=149/44	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=149/51
RA	651	.	NC_007779	3891906	1	.	T	bias_e_value=2343610	bias_p_value=0.504399	fisher_strand_p_value=0.208701	frequency=8.402824e-03	genotype_quality=1158.9	ks_quality_p_value=0.907108	log10_base_likelihood=-8.03627	log10_qual_likelihood_position_model=2.04889	log10_strand_likelihood_position_model=0.680475	new_cov=2/0	polymorphism_quality=2.6	quality=2.6	quality_position_model=3.33074e-07	ref_cov=107/129	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=109/129
RA	652	.	NC_007779	3891907	0	T	.	bias_e_value=3417660	bias_p_value=0.735561	fisher_strand_p_value=0.416714	frequency=2.519989e-02	genotype_quality=924.3	ks_quality_p_value=0.882337	log10_base_likelihood=-17.8312	log10_qual_likelihood_position_model=3.81435	log10_strand_likelihood_position_model=0.712446	new_cov=4/2	polymorphism_quality=12.5	quality=12.5	quality_position_model=2.16211e-15	ref_cov=105/127	reject=INDEL_HOMOPOLYMER	tot_cov=109/129
RA	653	.	NC_007779	3895373	0	T	G	bias_e_value=9.06599e-08	bias_p_value=1.95121e-14	fisher_strand_p_value=5.39672e-16	frequency=1.088228e-01	genotype_quality=630.6	ks_quality_p_value=1	log10_base_likelihood=-10.0172	log10_qual_likelihood_position_model=36.7692	log10_strand_likelihood_position_model=15.2679	new_cov=36/0	polymorphism_quality=4.6	quality=4.6	quality_position_model=Inf	ref_cov=58/125	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=94/125
RA	654	.	NC_007779	3898657	0	C	G	frequency=1	genotype_quality=1259.8	new_cov=143/154	quality=1259.8	ref_cov=0/0	tot_cov=143/154
RA	655	.	NC_007779	3898897	0	G	T	bias_e_value=1370.79	bias_p_value=0.000295026	fisher_strand_p_value=2.56506e-05	frequency=3.053951e-02	genotype_quality=674.0	ks_quality_p_value=0.993453	log10_base_likelihood=-6.27331	log10_qual_likelihood_position_model=10.071	log10_strand_likelihood_position_model=4.5909	new_cov=6/0	polymorphism_quality=0.7	quality=0.7	quality_position_model=Inf	ref_cov=26/142	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=32/142
RA	656	.	NC_007779	3900676	1	.	G	bias_e_value=463889	bias_p_value=0.0998398	fisher_strand_p_value=0.0224362	frequency=1.393700e-02	genotype_quality=1395.0	ks_quality_p_value=0.909686	log10_base_likelihood=-17.5858	log10_qual_likelihood_position_model=2.30873	log10_strand_likelihood_position_model=1.64905	new_cov=4/0	polymorphism_quality=12.3	quality=12.3	quality_position_model=1.01438e-15	ref_cov=108/175	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=112/175
RA	657	.	NC_007779	3900680	0	T	G	bias_e_value=1.96568e-15	bias_p_value=4.2306e-22	fisher_strand_p_value=7.80448e-24	frequency=9.611416e-02	genotype_quality=748.5	ks_quality_p_value=1	log10_base_likelihood=-30.6083	log10_qual_likelihood_position_model=27.9993	log10_strand_likelihood_position_model=23.1077	new_cov=23/0	polymorphism_quality=25.4	quality=25.4	quality_position_model=Inf	ref_cov=9/180	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=32/180
RA	658	.	NC_007779	3910746	0	C	A	bias_e_value=19.4244	bias_p_value=4.18058e-06	fisher_strand_p_value=2.5857e-07	frequency=5.866098e-02	genotype_quality=1038.0	ks_quality_p_value=1	log10_base_likelihood=-16.0804	log10_qual_likelihood_position_model=22.1501	log10_strand_likelihood_position_model=6.69647	new_cov=26/0	polymorphism_quality=10.7	quality=10.7	quality_position_model=Inf	ref_cov=156/137	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=183/137
RA	659	.	NC_007779	3930443	0	T	G	bias_e_value=6.01606e-13	bias_p_value=1.2948e-19	fisher_strand_p_value=2.67688e-21	frequency=1.018505e-01	genotype_quality=637.7	ks_quality_p_value=1	log10_base_likelihood=-12.1572	log10_qual_likelihood_position_model=28.9986	log10_strand_likelihood_position_model=20.5724	new_cov=37/0	polymorphism_quality=6.8	quality=6.8	quality_position_model=Inf	ref_cov=34/134	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=71/134
RA	660	.	NC_007779	3931929	0	C	G	bias_e_value=2454	bias_p_value=0.000528158	fisher_strand_p_value=4.9692e-05	frequency=2.995491e-02	genotype_quality=1104.9	ks_quality_p_value=0.971681	log10_base_likelihood=-8.23944	log10_qual_likelihood_position_model=15.2229	log10_strand_likelihood_position_model=4.30371	new_cov=0/12	polymorphism_quality=2.8	quality=2.8	quality_position_model=Inf	ref_cov=179/133	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=179/145
RA	661	.	NC_007779	3952095	1	.	G	bias_e_value=410636	bias_p_value=0.0883785	fisher_strand_p_value=0.0245445	frequency=1.470566e-02	genotype_quality=991.2	ks_quality_p_value=0.71381	log10_base_likelihood=-13.5028	log10_qual_likelihood_position_model=1.63378	log10_strand_likelihood_position_model=1.61005	new_cov=3/0	polymorphism_quality=8.1	quality=8.1	quality_position_model=2.72162e-12	ref_cov=57/144	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=60/144
RA	662	.	NC_007779	3976303	1	.	A	bias_e_value=2286260	bias_p_value=0.492056	fisher_strand_p_value=0.610715	frequency=1.063824e-02	genotype_quality=1374.5	ks_quality_p_value=0.297987	log10_base_likelihood=-12.6369	log10_qual_likelihood_position_model=1.94125	log10_strand_likelihood_position_model=0.440767	new_cov=1/2	polymorphism_quality=7.3	quality=7.3	quality_position_model=2.7479e-12	ref_cov=145/134	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=146/136
RA	663	.	NC_007779	4000217	0	A	G	bias_e_value=138.601	bias_p_value=2.98302e-05	fisher_strand_p_value=2.12109e-06	frequency=3.469181e-02	genotype_quality=990.7	ks_quality_p_value=1	log10_base_likelihood=-7.51952	log10_qual_likelihood_position_model=19.0386	log10_strand_likelihood_position_model=5.6882	new_cov=1/17	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=179/112	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=180/129
RA	664	.	NC_007779	4000222	0	C	G	bias_e_value=0.00348358	bias_p_value=7.49748e-10	fisher_strand_p_value=3.38956e-11	frequency=7.424498e-02	genotype_quality=1077.5	ks_quality_p_value=0.876372	log10_base_likelihood=-19.8906	log10_qual_likelihood_position_model=36.4871	log10_strand_likelihood_position_model=10.4699	new_cov=0/31	polymorphism_quality=14.6	quality=14.6	quality_position_model=Inf	ref_cov=176/134	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=176/165
RA	665	.	NC_007779	4009807	0	T	G	bias_e_value=4530.27	bias_p_value=0.000975021	fisher_strand_p_value=0.000110185	frequency=1.792145e-02	genotype_quality=646.8	ks_quality_p_value=0.86235	log10_base_likelihood=-6.39968	log10_qual_likelihood_position_model=2.89583	log10_strand_likelihood_position_model=3.95788	new_cov=3/0	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=6/158	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=9/158
RA	666	.	NC_007779	4010407	0	C	A	bias_e_value=455.275	bias_p_value=9.79859e-05	fisher_strand_p_value=8.06966e-06	frequency=3.910255e-02	genotype_quality=704.6	ks_quality_p_value=0.950233	log10_base_likelihood=-5.96749	log10_qual_likelihood_position_model=12.5187	log10_strand_likelihood_position_model=5.09314	new_cov=0/10	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=137/56	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=137/66
RA	667	.	NC_007779	4022073	0	A	C	bias_e_value=0.00106042	bias_p_value=2.28228e-10	fisher_strand_p_value=8.61986e-12	frequency=4.307842e-02	genotype_quality=628.7	ks_quality_p_value=1	log10_base_likelihood=-6.17925	log10_qual_likelihood_position_model=21.0485	log10_strand_likelihood_position_model=11.0645	new_cov=0/21	polymorphism_quality=0.6	quality=0.6	quality_position_model=Inf	ref_cov=129/44	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=129/65
RA	668	.	NC_007779	4023064	1	.	G	bias_e_value=882335	bias_p_value=0.189899	fisher_strand_p_value=0.0595312	frequency=1.913834e-02	genotype_quality=1002.8	ks_quality_p_value=0.785065	log10_base_likelihood=-18.0959	log10_qual_likelihood_position_model=1.81066	log10_strand_likelihood_position_model=1.22526	new_cov=4/0	polymorphism_quality=12.8	quality=12.8	quality_position_model=3.57397e-17	ref_cov=100/105	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=104/105
RA	669	.	NC_007779	4029622	1	.	G	bias_e_value=2430760	bias_p_value=0.523157	fisher_strand_p_value=0.203762	frequency=8.620262e-03	genotype_quality=1121.1	ks_quality_p_value=0.985415	log10_base_likelihood=-7.63675	log10_qual_likelihood_position_model=1.98091	log10_strand_likelihood_position_model=0.690877	new_cov=2/0	polymorphism_quality=2.1	quality=2.1	quality_position_model=7.54952e-07	ref_cov=103/127	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=105/127
RA	670	.	NC_007779	4029628	0	C	G	bias_e_value=0.663287	bias_p_value=1.42755e-07	fisher_strand_p_value=7.22991e-09	frequency=5.041647e-02	genotype_quality=631.4	ks_quality_p_value=1	log10_base_likelihood=-7.82391	log10_qual_likelihood_position_model=12.1538	log10_strand_likelihood_position_model=8.14087	new_cov=11/0	polymorphism_quality=2.3	quality=2.3	quality_position_model=Inf	ref_cov=24/134	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=35/134
RA	671	.	NC_007779	4029633	0	T	G	bias_e_value=1.35282e-05	bias_p_value=2.91159e-12	fisher_strand_p_value=9.39337e-14	frequency=7.528830e-02	genotype_quality=597.3	ks_quality_p_value=1	log10_base_likelihood=-17.3965	log10_qual_likelihood_position_model=18.7151	log10_strand_likelihood_position_model=13.0272	new_cov=17/0	polymorphism_quality=12.1	quality=12.1	quality_position_model=Inf	ref_cov=19/133	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=36/133
RA	672	.	NC_007779	4031691	1	.	T	bias_e_value=123503	bias_p_value=0.0265808	fisher_strand_p_value=0.00495101	frequency=1.801777e-02	genotype_quality=1048.2	ks_quality_p_value=0.826058	log10_base_likelihood=-17.3169	log10_qual_likelihood_position_model=2.30085	log10_strand_likelihood_position_model=2.30531	new_cov=4/0	polymorphism_quality=12.0	quality=12.0	quality_position_model=8.6726e-15	ref_cov=56/162	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=60/162
RA	673	.	NC_007779	4031695	1	.	C	bias_e_value=832327	bias_p_value=0.179136	fisher_strand_p_value=0.0435223	frequency=9.568214e-03	genotype_quality=974.1	ks_quality_p_value=0.9941	log10_base_likelihood=-6.74881	log10_qual_likelihood_position_model=4.33718	log10_strand_likelihood_position_model=1.36129	new_cov=2/0	polymorphism_quality=1.2	quality=1.2	quality_position_model=0.0122691	ref_cov=42/165	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=44/165
RA	674	.	NC_007779	4031696	0	C	T	bias_e_value=0.19523	bias_p_value=4.20181e-08	fisher_strand_p_value=2.16586e-09	frequency=5.439281e-02	genotype_quality=759.9	ks_quality_p_value=0.922449	log10_base_likelihood=-13.0809	log10_qual_likelihood_position_model=12.9259	log10_strand_likelihood_position_model=8.66437	new_cov=12/0	polymorphism_quality=7.7	quality=7.7	quality_position_model=Inf	ref_cov=33/168	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=45/169
RA	675	.	NC_007779	4031700	0	T	C	bias_e_value=322.496	bias_p_value=6.94088e-05	fisher_strand_p_value=5.67771e-06	frequency=2.722359e-02	genotype_quality=697.6	ks_quality_p_value=0.929494	log10_base_likelihood=-6.47613	log10_qual_likelihood_position_model=7.1129	log10_strand_likelihood_position_model=5.24583	new_cov=6/0	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=24/178	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=30/178
RA	676	.	NC_007779	4035478	0	A	C	bias_e_value=295.127	bias_p_value=6.35183e-05	fisher_strand_p_value=4.79455e-06	frequency=2.870750e-02	genotype_quality=694.1	ks_quality_p_value=1	log10_base_likelihood=-7.80224	log10_qual_likelihood_position_model=8.60223	log10_strand_likelihood_position_model=5.31925	new_cov=0/6	polymorphism_quality=2.3	quality=2.3	quality_position_model=Inf	ref_cov=157/20	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=157/26
RA	677	.	NC_007779	4037745	0	G	T	bias_e_value=165.944	bias_p_value=3.57151e-05	fisher_strand_p_value=2.57506e-06	frequency=3.783417e-02	genotype_quality=951.1	ks_quality_p_value=1	log10_base_likelihood=-6.77607	log10_qual_likelihood_position_model=15.0332	log10_strand_likelihood_position_model=5.58921	new_cov=0/17	polymorphism_quality=1.3	quality=1.3	quality_position_model=Inf	ref_cov=147/121	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=147/138
RA	678	.	NC_007779	4043703	0	C	A	bias_e_value=1.32909	bias_p_value=2.86051e-07	fisher_strand_p_value=1.50457e-08	frequency=5.231380e-02	genotype_quality=915.4	ks_quality_p_value=1	log10_base_likelihood=-6.44342	log10_qual_likelihood_position_model=22.2899	log10_strand_likelihood_position_model=7.86028	new_cov=26/0	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=123/137	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=150/137
RA	679	.	NC_007779	4045420	0	G	T	bias_e_value=7197.94	bias_p_value=0.00154917	fisher_strand_p_value=0.000171092	frequency=4.398155e-02	genotype_quality=774.3	ks_quality_p_value=0.92896	log10_base_likelihood=-9.99979	log10_qual_likelihood_position_model=17.2643	log10_strand_likelihood_position_model=4.0678	new_cov=13/0	polymorphism_quality=4.6	quality=4.6	quality_position_model=Inf	ref_cov=103/116	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=116/116
RA	680	.	NC_007779	4055100	0	G	T	bias_e_value=9.24204e-10	bias_p_value=1.98911e-16	fisher_strand_p_value=5.87806e-18	frequency=1.467919e-01	genotype_quality=692.7	ks_quality_p_value=0.828102	log10_base_likelihood=-47.1685	log10_qual_likelihood_position_model=39.6518	log10_strand_likelihood_position_model=17.2308	new_cov=35/0	polymorphism_quality=42.1	quality=42.1	quality_position_model=Inf	ref_cov=49/139	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=84/139
RA	681	.	NC_007779	4055329	0	T	G	bias_e_value=1.33359e-21	bias_p_value=2.8702e-28	fisher_strand_p_value=4.1811e-30	frequency=1.108284e-01	genotype_quality=723.8	ks_quality_p_value=1	log10_base_likelihood=-22.6311	log10_qual_likelihood_position_model=36.7652	log10_strand_likelihood_position_model=29.3787	new_cov=33/0	polymorphism_quality=17.4	quality=17.4	quality_position_model=Inf	ref_cov=11/176	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=44/176
RA	682	.	NC_007779	4059485	0	T	.	bias_e_value=3854660	bias_p_value=0.829613	fisher_strand_p_value=0.61958	frequency=1.082039e-02	genotype_quality=1099.1	ks_quality_p_value=0.768828	log10_base_likelihood=-7.86164	log10_qual_likelihood_position_model=2.56914	log10_strand_likelihood_position_model=0.429213	new_cov=1/2	polymorphism_quality=2.4	quality=2.4	quality_position_model=9.63284e-07	ref_cov=139/135	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=140/137
RA	683	.	NC_007779	4062114	0	T	G	bias_e_value=2.26913e-18	bias_p_value=4.88371e-25	fisher_strand_p_value=7.99414e-27	frequency=1.460710e-01	genotype_quality=563.1	ks_quality_p_value=1	log10_base_likelihood=-21.2189	log10_qual_likelihood_position_model=38.477	log10_strand_likelihood_position_model=26.0972	new_cov=42/0	polymorphism_quality=15.9	quality=15.9	quality_position_model=Inf	ref_cov=21/128	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=63/128
RA	684	.	NC_007779	4064463	0	G	T	bias_e_value=0.197079	bias_p_value=4.2416e-08	fisher_strand_p_value=2.01777e-09	frequency=8.281994e-02	genotype_quality=868.1	ks_quality_p_value=1	log10_base_likelihood=-15.7214	log10_qual_likelihood_position_model=20.9186	log10_strand_likelihood_position_model=8.98878	new_cov=0/32	polymorphism_quality=10.4	quality=10.4	quality_position_model=Inf	ref_cov=131/128	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=131/160
RA	685	.	NC_007779	4065564	0	C	G	bias_e_value=33.397	bias_p_value=7.18781e-06	fisher_strand_p_value=4.6106e-07	frequency=4.605675e-02	genotype_quality=876.3	ks_quality_p_value=1	log10_base_likelihood=-8.28435	log10_qual_likelihood_position_model=13.7858	log10_strand_likelihood_position_model=6.33624	new_cov=14/0	polymorphism_quality=2.8	quality=2.8	quality_position_model=Inf	ref_cov=76/153	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=90/153
RA	686	.	NC_007779	4074533	0	T	G	bias_e_value=0.170094	bias_p_value=3.66083e-08	fisher_strand_p_value=1.72877e-09	frequency=4.572296e-02	genotype_quality=746.6	ks_quality_p_value=1	log10_base_likelihood=-9.04035	log10_qual_likelihood_position_model=20.21	log10_strand_likelihood_position_model=8.76226	new_cov=0/17	polymorphism_quality=3.6	quality=3.6	quality_position_model=Inf	ref_cov=152/58	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=152/75
RA	687	.	NC_007779	4074542	0	C	A	bias_e_value=0.186589	bias_p_value=4.01584e-08	fisher_strand_p_value=1.96874e-09	frequency=6.337976e-02	genotype_quality=812.1	ks_quality_p_value=0.96771	log10_base_likelihood=-16.5728	log10_qual_likelihood_position_model=21.8886	log10_strand_likelihood_position_model=8.70581	new_cov=0/18	polymorphism_quality=11.2	quality=11.2	quality_position_model=Inf	ref_cov=156/67	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=156/85
RA	688	.	NC_007779	4076934	0	A	C	bias_e_value=1.09592e-11	bias_p_value=2.35868e-18	fisher_strand_p_value=5.19487e-20	frequency=1.434355e-01	genotype_quality=754.5	ks_quality_p_value=1	log10_base_likelihood=-33.0728	log10_qual_likelihood_position_model=31.3957	log10_strand_likelihood_position_model=19.2844	new_cov=0/47	polymorphism_quality=27.9	quality=27.9	quality_position_model=Inf	ref_cov=152/74	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=152/122
RA	689	.	NC_007779	4078140	0	C	G	bias_e_value=0.0229322	bias_p_value=4.93555e-09	fisher_strand_p_value=2.12061e-10	frequency=6.138515e-02	genotype_quality=809.9	ks_quality_p_value=1	log10_base_likelihood=-12.4355	log10_qual_likelihood_position_model=17.6372	log10_strand_likelihood_position_model=9.67354	new_cov=16/0	polymorphism_quality=7.0	quality=7.0	quality_position_model=Inf	ref_cov=45/161	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=61/161
RA	690	.	NC_007779	4084209	0	A	G	bias_e_value=0.00313685	bias_p_value=6.75124e-10	fisher_strand_p_value=2.66333e-11	frequency=7.386589e-02	genotype_quality=791.6	ks_quality_p_value=1	log10_base_likelihood=-9.4454	log10_qual_likelihood_position_model=19.8034	log10_strand_likelihood_position_model=10.5746	new_cov=28/0	polymorphism_quality=4.0	quality=4.0	quality_position_model=Inf	ref_cov=92/147	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=120/147
RA	691	.	NC_007779	4090749	0	A	T	frequency=1	genotype_quality=1192.5	new_cov=160/139	quality=1192.5	ref_cov=0/0	tot_cov=160/140
RA	692	.	NC_007779	4098730	0	G	T	bias_e_value=0.71882	bias_p_value=1.54707e-07	fisher_strand_p_value=7.86899e-09	frequency=6.449604e-02	genotype_quality=825.3	ks_quality_p_value=1	log10_base_likelihood=-14.461	log10_qual_likelihood_position_model=18.6312	log10_strand_likelihood_position_model=8.10408	new_cov=0/25	polymorphism_quality=9.1	quality=9.1	quality_position_model=Inf	ref_cov=135/109	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=135/134
RA	693	.	NC_007779	4104299	0	C	G	bias_e_value=207.835	bias_p_value=4.4731e-05	fisher_strand_p_value=3.28692e-06	frequency=2.662563e-02	genotype_quality=723.2	ks_quality_p_value=0.998672	log10_base_likelihood=-6.1002	log10_qual_likelihood_position_model=8.2204	log10_strand_likelihood_position_model=5.48321	new_cov=0/5	polymorphism_quality=0.6	quality=0.6	quality_position_model=Inf	ref_cov=160/11	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=160/16
RA	694	.	NC_007779	4115400	1	.	C	bias_e_value=406936	bias_p_value=0.0875822	fisher_strand_p_value=0.0173235	frequency=1.309490e-02	genotype_quality=1080.6	ks_quality_p_value=1	log10_base_likelihood=-9.09148	log10_qual_likelihood_position_model=5.51749	log10_strand_likelihood_position_model=1.76136	new_cov=0/3	polymorphism_quality=3.6	quality=3.6	quality_position_model=0.00168064	ref_cov=169/57	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=169/60
RA	695	.	NC_007779	4123725	0	A	C	bias_e_value=0.00139949	bias_p_value=3.01204e-10	fisher_strand_p_value=1.15014e-11	frequency=5.392885e-02	genotype_quality=841.0	ks_quality_p_value=1	log10_base_likelihood=-8.11164	log10_qual_likelihood_position_model=30.0001	log10_strand_likelihood_position_model=10.9393	new_cov=0/29	polymorphism_quality=2.6	quality=2.6	quality_position_model=Inf	ref_cov=146/91	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=146/120
RA	696	.	NC_007779	4140347	0	A	C	bias_e_value=1.47655e-14	bias_p_value=3.17788e-21	fisher_strand_p_value=6.09347e-23	frequency=5.695295e-02	genotype_quality=867.6	ks_quality_p_value=1	log10_base_likelihood=-5.99535	log10_qual_likelihood_position_model=34.7448	log10_strand_likelihood_position_model=22.2151	new_cov=0/33	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=189/35	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=189/68
RA	697	.	NC_007779	4147012	0	A	C	bias_e_value=0.00740075	bias_p_value=1.59281e-09	fisher_strand_p_value=6.51336e-11	frequency=7.459402e-02	genotype_quality=771.3	ks_quality_p_value=1	log10_base_likelihood=-7.69679	log10_qual_likelihood_position_model=22.8217	log10_strand_likelihood_position_model=10.1862	new_cov=0/27	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=135/84	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=135/111
RA	698	.	NC_007779	4148388	0	G	A	bias_e_value=1128.92	bias_p_value=0.00024297	fisher_strand_p_value=2.06084e-05	frequency=3.192043e-02	genotype_quality=834.6	ks_quality_p_value=1	log10_base_likelihood=-6.54745	log10_qual_likelihood_position_model=11.8387	log10_strand_likelihood_position_model=4.68595	new_cov=0/8	polymorphism_quality=1.0	quality=1.0	quality_position_model=Inf	ref_cov=161/52	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=161/60
RA	699	.	NC_007779	4148399	0	A	C	bias_e_value=2.41844e-15	bias_p_value=5.20505e-22	fisher_strand_p_value=9.63966e-24	frequency=1.197424e-01	genotype_quality=776.7	ks_quality_p_value=1	log10_base_likelihood=-15.4524	log10_qual_likelihood_position_model=38.9368	log10_strand_likelihood_position_model=23.0159	new_cov=0/48	polymorphism_quality=10.1	quality=10.1	quality_position_model=Inf	ref_cov=157/55	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=157/103
RA	700	.	NC_007779	4159514	0	T	G	bias_e_value=9.73757e-15	bias_p_value=2.09575e-21	fisher_strand_p_value=3.98609e-23	frequency=7.567263e-02	genotype_quality=777.8	ks_quality_p_value=1	log10_base_likelihood=-7.31781	log10_qual_likelihood_position_model=38.6638	log10_strand_likelihood_position_model=22.3995	new_cov=50/0	polymorphism_quality=1.8	quality=1.8	quality_position_model=Inf	ref_cov=62/155	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=114/155
RA	701	.	NC_007779	4165991	0	A	C	frequency=1	genotype_quality=1299.2	new_cov=172/133	quality=1299.2	ref_cov=0/0	tot_cov=172/133
RA	702	.	NC_007779	4197139	0	T	G	bias_e_value=0.00018621	bias_p_value=4.00769e-11	fisher_strand_p_value=1.41702e-12	frequency=7.533979e-02	genotype_quality=638.4	ks_quality_p_value=1	log10_base_likelihood=-15.8819	log10_qual_likelihood_position_model=18.7227	log10_strand_likelihood_position_model=11.8486	new_cov=16/0	polymorphism_quality=10.5	quality=10.5	quality_position_model=Inf	ref_cov=23/140	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=39/140
RA	703	.	NC_007779	4200679	0	C	G	bias_e_value=76.3591	bias_p_value=1.64343e-05	fisher_strand_p_value=1.11905e-06	frequency=2.820873e-02	genotype_quality=840.9	ks_quality_p_value=0.998749	log10_base_likelihood=-6.39827	log10_qual_likelihood_position_model=10.9797	log10_strand_likelihood_position_model=5.95115	new_cov=0/7	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=182/26	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=182/33
RA	704	.	NC_007779	4200813	1	.	A	bias_e_value=3546440	bias_p_value=0.763278	fisher_strand_p_value=1	frequency=1.094913e-02	genotype_quality=1303.9	ks_quality_p_value=0.396483	log10_base_likelihood=-12.5569	log10_qual_likelihood_position_model=2.06514	log10_strand_likelihood_position_model=0.424381	new_cov=1/2	polymorphism_quality=7.2	quality=7.2	quality_position_model=4.2693e-12	ref_cov=136/135	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=137/137
RA	705	.	NC_007779	4203863	0	G	A	bias_e_value=817565	bias_p_value=0.175959	fisher_strand_p_value=0.0521408	frequency=1.206207e-02	genotype_quality=1358.6	ks_quality_p_value=0.81045	log10_base_likelihood=-6.71465	log10_qual_likelihood_position_model=2.29984	log10_strand_likelihood_position_model=1.28282	new_cov=4/0	polymorphism_quality=1.2	quality=1.2	quality_position_model=6.34034e-05	ref_cov=154/171	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=158/171
RA	706	.	NC_007779	4207565	0	C	A	bias_e_value=1528.03	bias_p_value=0.000328868	fisher_strand_p_value=2.87006e-05	frequency=3.450966e-02	genotype_quality=954.4	ks_quality_p_value=1	log10_base_likelihood=-5.76292	log10_qual_likelihood_position_model=20.4759	log10_strand_likelihood_position_model=4.65412	new_cov=19/1	polymorphism_quality=0.2	quality=0.2	quality_position_model=Inf	ref_cov=134/141	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=154/142
RA	707	.	NC_007779	4213860	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	708	.	NC_007779	4213861	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	709	.	NC_007779	4213862	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	710	.	NC_007779	4213864	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	711	.	NC_007779	4213866	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	712	.	NC_007779	4213867	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	713	.	NC_007779	4213868	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	714	.	NC_007779	4213869	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	715	.	NC_007779	4213870	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	716	.	NC_007779	4213871	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	717	.	NC_007779	4213872	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	718	.	NC_007779	4213874	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	719	.	NC_007779	4213875	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	720	.	NC_007779	4213877	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	721	.	NC_007779	4213878	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	722	.	NC_007779	4213879	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	723	.	NC_007779	4213880	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	724	.	NC_007779	4216464	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	725	.	NC_007779	4216465	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	726	.	NC_007779	4216466	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	727	.	NC_007779	4216468	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	728	.	NC_007779	4216470	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	729	.	NC_007779	4216471	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	730	.	NC_007779	4216472	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	731	.	NC_007779	4216473	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	732	.	NC_007779	4216474	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	733	.	NC_007779	4216475	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	734	.	NC_007779	4216476	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	735	.	NC_007779	4216477	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	736	.	NC_007779	4216478	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	737	.	NC_007779	4216479	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	738	.	NC_007779	4216480	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	739	.	NC_007779	4216481	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	740	.	NC_007779	4216484	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	741	.	NC_007779	4216485	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	742	.	NC_007779	4216486	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	743	.	NC_007779	4218867	0	A	T	bias_e_value=54376.2	bias_p_value=0.011703	fisher_strand_p_value=0.00156939	frequency=2.691746e-02	genotype_quality=1132.0	ks_quality_p_value=1	log10_base_likelihood=-6.2646	log10_qual_likelihood_position_model=16.3409	log10_strand_likelihood_position_model=2.80427	new_cov=9/0	polymorphism_quality=0.7	quality=0.7	quality_position_model=Inf	ref_cov=138/150	reject=EVALUE,POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=147/150
RA	744	.	NC_007779	4219520	0	C	A	bias_e_value=14.314	bias_p_value=3.08071e-06	fisher_strand_p_value=1.89814e-07	frequency=4.086018e-02	genotype_quality=1029.2	ks_quality_p_value=0.984044	log10_base_likelihood=-8.49584	log10_qual_likelihood_position_model=21.5788	log10_strand_likelihood_position_model=6.72167	new_cov=18/0	polymorphism_quality=3.0	quality=3.0	quality_position_model=Inf	ref_cov=111/164	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=130/164
RA	745	.	NC_007779	4220019	0	A	C	bias_e_value=6.93235e-13	bias_p_value=1.49201e-19	fisher_strand_p_value=3.09385e-21	frequency=1.568809e-01	genotype_quality=794.6	ks_quality_p_value=1	log10_base_likelihood=-24.8943	log10_qual_likelihood_position_model=58.4308	log10_strand_likelihood_position_model=20.5236	new_cov=0/64	polymorphism_quality=19.7	quality=19.7	quality_position_model=Inf	ref_cov=136/94	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=136/160
RA	746	.	NC_007779	4224248	1	.	T	bias_e_value=4155550	bias_p_value=0.894373	fisher_strand_p_value=0.612444	frequency=1.023865e-02	genotype_quality=1428.6	ks_quality_p_value=0.942343	log10_base_likelihood=-12.4155	log10_qual_likelihood_position_model=2.69371	log10_strand_likelihood_position_model=0.438538	new_cov=2/1	polymorphism_quality=7.0	quality=7.0	quality_position_model=2.70009e-11	ref_cov=140/150	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=142/151
RA	747	.	NC_007779	4226513	0	C	A	bias_e_value=0.0322949	bias_p_value=6.95063e-09	fisher_strand_p_value=3.03305e-10	frequency=5.296898e-02	genotype_quality=1120.7	ks_quality_p_value=1	log10_base_likelihood=-11.9356	log10_qual_likelihood_position_model=21.9216	log10_strand_likelihood_position_model=9.51812	new_cov=25/0	polymorphism_quality=6.5	quality=6.5	quality_position_model=Inf	ref_cov=122/189	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=147/189
RA	748	.	NC_007779	4227183	0	T	G	bias_e_value=4.60497e-21	bias_p_value=9.91098e-28	fisher_strand_p_value=1.47071e-29	frequency=1.135731e-01	genotype_quality=899.8	ks_quality_p_value=1	log10_base_likelihood=-17.5378	log10_qual_likelihood_position_model=41.9062	log10_strand_likelihood_position_model=28.8325	new_cov=59/0	polymorphism_quality=12.2	quality=12.2	quality_position_model=Inf	ref_cov=62/187	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=121/187
RA	749	.	NC_007779	4244592	0	G	C	bias_e_value=2.27589	bias_p_value=4.89826e-07	fisher_strand_p_value=2.65789e-08	frequency=5.274391e-02	genotype_quality=564.2	ks_quality_p_value=0.999195	log10_base_likelihood=-11.9527	log10_qual_likelihood_position_model=9.74274	log10_strand_likelihood_position_model=7.5775	new_cov=1/7	polymorphism_quality=6.6	quality=6.6	quality_position_model=Inf	ref_cov=132/5	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=133/12
RA	750	.	NC_007779	4272071	0	T	.	bias_e_value=3041890	bias_p_value=0.654686	fisher_strand_p_value=0.301555	frequency=9.760857e-03	genotype_quality=1234.7	ks_quality_p_value=0.977059	log10_base_likelihood=-7.50788	log10_qual_likelihood_position_model=2.44146	log10_strand_likelihood_position_model=0.595463	new_cov=2/1	polymorphism_quality=2.0	quality=2.0	quality_position_model=2.47147e-06	ref_cov=110/194	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=112/195
RA	751	.	NC_007779	4294403	0	C	G	bias_e_value=2.00602	bias_p_value=4.31743e-07	fisher_strand_p_value=2.32402e-08	frequency=5.505371e-02	genotype_quality=930.6	ks_quality_p_value=1	log10_base_likelihood=-9.74537	log10_qual_likelihood_position_model=16.8586	log10_strand_likelihood_position_model=7.63376	new_cov=19/0	polymorphism_quality=4.3	quality=4.3	quality_position_model=Inf	ref_cov=94/158	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=114/158
RA	752	.	NC_007779	4309615	0	C	G	bias_e_value=0.949244	bias_p_value=2.043e-07	fisher_strand_p_value=1.05487e-08	frequency=6.522560e-02	genotype_quality=699.2	ks_quality_p_value=1	log10_base_likelihood=-11.0552	log10_qual_likelihood_position_model=15.7731	log10_strand_likelihood_position_model=7.9768	new_cov=16/0	polymorphism_quality=5.6	quality=5.6	quality_position_model=Inf	ref_cov=54/134	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=70/134
RA	753	.	NC_007779	4310412	0	C	A	deleted=1	frequency=1	genotype_quality=1.2	new_cov=0/1	quality=1.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	754	.	NC_007779	4310415	0	T	A	deleted=1	frequency=1	genotype_quality=0.9	new_cov=0/1	quality=0.9	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	755	.	NC_007779	4311992	0	G	C	bias_e_value=1131.46	bias_p_value=0.000243517	fisher_strand_p_value=2.06592e-05	frequency=5.866480e-02	genotype_quality=501.2	ks_quality_p_value=1	log10_base_likelihood=-11.17	log10_qual_likelihood_position_model=9.76348	log10_strand_likelihood_position_model=4.69466	new_cov=2/6	polymorphism_quality=5.8	quality=5.8	quality_position_model=Inf	ref_cov=113/9	reject=FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=115/15
RA	756	.	NC_007779	4318994	0	A	G	bias_e_value=734.618	bias_p_value=0.000158107	fisher_strand_p_value=1.28978e-05	frequency=2.754307e-02	genotype_quality=612.7	ks_quality_p_value=1	log10_base_likelihood=-6.90638	log10_qual_likelihood_position_model=8.22809	log10_strand_likelihood_position_model=4.89396	new_cov=1/5	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=160/10	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=161/15
RA	757	.	NC_007779	4321435	0	G	C	bias_e_value=209.201	bias_p_value=4.5025e-05	fisher_strand_p_value=3.44381e-06	frequency=4.442978e-02	genotype_quality=445.1	ks_quality_p_value=0.959937	log10_base_likelihood=-9.70167	log10_qual_likelihood_position_model=6.87233	log10_strand_likelihood_position_model=5.46296	new_cov=5/0	polymorphism_quality=4.3	quality=4.3	quality_position_model=Inf	ref_cov=6/101	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=11/101
RA	758	.	NC_007779	4337469	0	A	C	bias_e_value=1.22834e-21	bias_p_value=2.64368e-28	fisher_strand_p_value=3.84645e-30	frequency=1.745234e-01	genotype_quality=684.4	ks_quality_p_value=1	log10_base_likelihood=-43.1903	log10_qual_likelihood_position_model=42.8188	log10_strand_likelihood_position_model=29.4149	new_cov=0/49	polymorphism_quality=38.1	quality=38.1	quality_position_model=Inf	ref_cov=157/30	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=157/79
RA	759	.	NC_007779	4342787	1	.	A	bias_e_value=3438230	bias_p_value=0.739987	fisher_strand_p_value=0.541567	frequency=7.352829e-03	genotype_quality=1316.5	ks_quality_p_value=0.68714	log10_base_likelihood=-7.42846	log10_qual_likelihood_position_model=2.5412	log10_strand_likelihood_position_model=0.378987	new_cov=2/0	polymorphism_quality=1.9	quality=1.9	quality_position_model=2.25931e-06	ref_cov=174/96	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=176/96
RA	760	.	NC_007779	4348529	0	T	G	bias_e_value=1.35304e-22	bias_p_value=2.91205e-29	fisher_strand_p_value=4.10331e-31	frequency=1.496973e-01	genotype_quality=739.8	ks_quality_p_value=1	log10_base_likelihood=-21.9598	log10_qual_likelihood_position_model=45.8144	log10_strand_likelihood_position_model=30.3869	new_cov=53/0	polymorphism_quality=16.7	quality=16.7	quality_position_model=Inf	ref_cov=37/169	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=91/169
RA	761	.	NC_007779	4351353	0	T	G	bias_e_value=5.12332e-09	bias_p_value=1.10266e-15	fisher_strand_p_value=2.81957e-17	frequency=5.739927e-02	genotype_quality=769.1	ks_quality_p_value=1	log10_base_likelihood=-8.15261	log10_qual_likelihood_position_model=33.4096	log10_strand_likelihood_position_model=16.5498	new_cov=27/0	polymorphism_quality=2.7	quality=2.7	quality_position_model=Inf	ref_cov=38/159	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=65/159
RA	762	.	NC_007779	4366253	0	A	G	bias_e_value=3955120	bias_p_value=0.851235	fisher_strand_p_value=0.639082	frequency=1.295185e-02	genotype_quality=1115.2	ks_quality_p_value=0.792999	log10_base_likelihood=-6.99342	log10_qual_likelihood_position_model=2.77073	log10_strand_likelihood_position_model=0.490364	new_cov=1/3	polymorphism_quality=1.5	quality=1.5	quality_position_model=1.47042e-05	ref_cov=128/171	reject=EVALUE,POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=129/174
RA	763	.	NC_007779	4371271	0	A	.	frequency=1	genotype_quality=1184.9	new_cov=127/110	quality=1184.9	ref_cov=0/0	tot_cov=127/110
RA	764	.	NC_007779	4371272	0	A	.	frequency=1	genotype_quality=1184.9	new_cov=127/110	quality=1184.9	ref_cov=0/0	tot_cov=127/110
RA	765	.	NC_007779	4393412	0	T	.	bias_e_value=1342770	bias_p_value=0.288996	fisher_strand_p_value=0.107167	frequency=1.066589e-02	genotype_quality=1115.8	ks_quality_p_value=0.772303	log10_base_likelihood=-7.74849	log10_qual_likelihood_position_model=1.60568	log10_strand_likelihood_position_model=0.969938	new_cov=0/3	polymorphism_quality=2.3	quality=2.3	quality_position_model=4.58922e-07	ref_cov=147/131	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=147/134
RA	766	.	NC_007779	4403831	0	G	T	bias_e_value=5336.91	bias_p_value=0.00114863	fisher_strand_p_value=0.000113955	frequency=2.736855e-02	genotype_quality=1025.4	ks_quality_p_value=1	log10_base_likelihood=-8.46746	log10_qual_likelihood_position_model=10.851	log10_strand_likelihood_position_model=3.94327	new_cov=0/11	polymorphism_quality=3.0	quality=3.0	quality_position_model=Inf	ref_cov=159/118	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=159/129
RA	767	.	NC_007779	4403968	1	.	T	bias_e_value=4075840	bias_p_value=0.877218	fisher_strand_p_value=1	frequency=6.557465e-03	genotype_quality=1468.7	ks_quality_p_value=0.547347	log10_base_likelihood=-7.67516	log10_qual_likelihood_position_model=1.65584	log10_strand_likelihood_position_model=0.300169	new_cov=1/1	polymorphism_quality=2.2	quality=2.2	quality_position_model=1.24489e-07	ref_cov=146/157	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=147/158
RA	768	.	NC_007779	4413578	0	A	.	bias_e_value=4619420	bias_p_value=0.994208	fisher_strand_p_value=1	frequency=9.247780e-03	genotype_quality=1250.1	ks_quality_p_value=0.894323	log10_base_likelihood=-7.48576	log10_qual_likelihood_position_model=2.20398	log10_strand_likelihood_position_model=0.424626	new_cov=2/1	polymorphism_quality=2.0	quality=2.0	quality_position_model=9.77569e-07	ref_cov=160/161	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=162/162
RA	769	.	NC_007779	4414724	1	.	T	bias_e_value=4166940	bias_p_value=0.896824	fisher_strand_p_value=0.635303	frequency=1.666641e-02	genotype_quality=1147.0	ks_quality_p_value=0.915507	log10_base_likelihood=-17.0875	log10_qual_likelihood_position_model=2.33097	log10_strand_likelihood_position_model=0.475051	new_cov=2/2	polymorphism_quality=11.8	quality=11.8	quality_position_model=2.20226e-16	ref_cov=89/147	reject=INDEL_HOMOPOLYMER	tot_cov=91/149
RA	770	.	NC_007779	4414725	0	T	.	bias_e_value=1804300	bias_p_value=0.388328	fisher_strand_p_value=0.147072	frequency=1.618195e-02	genotype_quality=961.1	ks_quality_p_value=0.861069	log10_base_likelihood=-10.785	log10_qual_likelihood_position_model=3.04966	log10_strand_likelihood_position_model=0.890725	new_cov=3/1	polymorphism_quality=5.4	quality=5.4	quality_position_model=8.57007e-09	ref_cov=89/154	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=92/155
RA	771	.	NC_007779	4419586	0	T	G	bias_e_value=7.74214e-18	bias_p_value=1.66629e-24	fisher_strand_p_value=2.78443e-26	frequency=2.367721e-01	genotype_quality=633.2	ks_quality_p_value=1	log10_base_likelihood=-58.2564	log10_qual_likelihood_position_model=42.9055	log10_strand_likelihood_position_model=25.575	new_cov=72/0	polymorphism_quality=53.2	quality=53.2	quality_position_model=Inf	ref_cov=70/131	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=142/131
RA	772	.	NC_007779	4423038	0	C	G	bias_e_value=0.000421779	bias_p_value=9.07768e-11	fisher_strand_p_value=3.30887e-12	frequency=6.926250e-02	genotype_quality=743.3	ks_quality_p_value=1	log10_base_likelihood=-16.0482	log10_qual_likelihood_position_model=16.7505	log10_strand_likelihood_position_model=11.4803	new_cov=16/0	polymorphism_quality=10.7	quality=10.7	quality_position_model=Inf	ref_cov=30/161	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=46/161
RA	773	.	NC_007779	4429120	0	G	T	bias_e_value=0.000301495	bias_p_value=6.48889e-11	fisher_strand_p_value=2.81705e-12	frequency=6.665993e-02	genotype_quality=1127.9	ks_quality_p_value=0.829087	log10_base_likelihood=-19.6431	log10_qual_likelihood_position_model=34.2019	log10_strand_likelihood_position_model=11.5502	new_cov=0/32	polymorphism_quality=14.4	quality=14.4	quality_position_model=Inf	ref_cov=188/129	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=188/162
RA	774	.	NC_007779	4455463	0	T	G	bias_e_value=6.06346e-17	bias_p_value=1.305e-23	fisher_strand_p_value=2.25976e-25	frequency=1.268716e-01	genotype_quality=669.6	ks_quality_p_value=1	log10_base_likelihood=-17.7473	log10_qual_likelihood_position_model=33.8733	log10_strand_likelihood_position_model=24.6459	new_cov=37/0	polymorphism_quality=12.4	quality=12.4	quality_position_model=Inf	ref_cov=25/154	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=62/154
RA	775	.	NC_007779	4476458	0	T	C	bias_e_value=3882360	bias_p_value=0.835576	fisher_strand_p_value=0.613306	frequency=1.051140e-02	genotype_quality=1119.4	ks_quality_p_value=0.789956	log10_base_likelihood=-5.70741	log10_qual_likelihood_position_model=1.91426	log10_strand_likelihood_position_model=0.43728	new_cov=2/1	polymorphism_quality=0.1	quality=0.1	quality_position_model=3.67087e-05	ref_cov=136/145	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=138/146
RA	776	.	NC_007779	4476910	0	T	G	bias_e_value=0.0339264	bias_p_value=7.30176e-09	fisher_strand_p_value=3.19346e-10	frequency=5.367613e-02	genotype_quality=496.3	ks_quality_p_value=1	log10_base_likelihood=-9.69972	log10_qual_likelihood_position_model=11.4238	log10_strand_likelihood_position_model=9.49574	new_cov=9/0	polymorphism_quality=4.3	quality=4.3	quality_position_model=Inf	ref_cov=7/121	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=16/121
RA	777	.	NC_007779	4477098	1	.	A	bias_e_value=1165640	bias_p_value=0.250874	fisher_strand_p_value=1	frequency=6.779671e-03	genotype_quality=1432.4	ks_quality_p_value=0.0680273	log10_base_likelihood=-7.92677	log10_qual_likelihood_position_model=1.4815	log10_strand_likelihood_position_model=0.31492	new_cov=1/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=4.67515e-08	ref_cov=174/119	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=175/120
RA	778	.	NC_007779	4484645	0	T	.	bias_e_value=2900220	bias_p_value=0.624195	fisher_strand_p_value=0.273374	frequency=8.917809e-03	genotype_quality=1344.0	ks_quality_p_value=0.989545	log10_base_likelihood=-7.55185	log10_qual_likelihood_position_model=2.47675	log10_strand_likelihood_position_model=0.685146	new_cov=3/0	polymorphism_quality=2.1	quality=2.1	quality_position_model=3.00335e-06	ref_cov=196/137	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=199/137
RA	779	.	NC_007779	4490145	0	T	G	bias_e_value=6.65065e-07	bias_p_value=1.43138e-13	fisher_strand_p_value=4.19704e-15	frequency=5.564833e-02	genotype_quality=739.1	ks_quality_p_value=1	log10_base_likelihood=-6.93819	log10_qual_likelihood_position_model=26.4583	log10_strand_likelihood_position_model=14.3771	new_cov=33/0	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=70/149	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=103/149
RA	780	.	NC_007779	4512406	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	781	.	NC_007779	4512407	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	782	.	NC_007779	4512408	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	783	.	NC_007779	4512409	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	784	.	NC_007779	4512410	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	785	.	NC_007779	4512412	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	786	.	NC_007779	4512413	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	787	.	NC_007779	4512414	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	788	.	NC_007779	4512415	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	789	.	NC_007779	4512416	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	790	.	NC_007779	4512417	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	791	.	NC_007779	4512418	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	792	.	NC_007779	4512419	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	793	.	NC_007779	4512420	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	794	.	NC_007779	4512421	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	795	.	NC_007779	4512422	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	796	.	NC_007779	4512423	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	797	.	NC_007779	4512425	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	798	.	NC_007779	4512426	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	799	.	NC_007779	4512427	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	800	.	NC_007779	4512428	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	801	.	NC_007779	4512430	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	802	.	NC_007779	4512431	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	803	.	NC_007779	4512432	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	804	.	NC_007779	4512434	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	805	.	NC_007779	4512435	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	806	.	NC_007779	4512436	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	807	.	NC_007779	4512437	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	808	.	NC_007779	4512438	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	809	.	NC_007779	4512439	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	810	.	NC_007779	4512440	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	811	.	NC_007779	4512442	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	812	.	NC_007779	4512443	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	813	.	NC_007779	4512444	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	814	.	NC_007779	4512445	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	815	.	NC_007779	4512446	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	816	.	NC_007779	4512447	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	817	.	NC_007779	4512449	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	818	.	NC_007779	4512450	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	819	.	NC_007779	4512451	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	820	.	NC_007779	4512452	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=1/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	821	.	NC_007779	4515100	0	T	.	bias_e_value=98510.8	bias_p_value=0.0212018	fisher_strand_p_value=0.106954	frequency=9.452820e-03	genotype_quality=1242.8	ks_quality_p_value=0.0293005	log10_base_likelihood=-7.59456	log10_qual_likelihood_position_model=2.26007	log10_strand_likelihood_position_model=0.970802	new_cov=0/3	polymorphism_quality=2.1	quality=2.1	quality_position_model=3.19939e-06	ref_cov=166/148	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=166/151
RA	822	.	NC_007779	4515413	0	T	G	bias_e_value=3.75393e-05	bias_p_value=8.07935e-12	fisher_strand_p_value=2.69843e-13	frequency=5.485439e-02	genotype_quality=700.1	ks_quality_p_value=1	log10_base_likelihood=-8.77617	log10_qual_likelihood_position_model=20.7471	log10_strand_likelihood_position_model=12.5689	new_cov=21/0	polymorphism_quality=3.3	quality=3.3	quality_position_model=Inf	ref_cov=39/147	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=61/147
RA	823	.	NC_007779	4515952	0	G	T	bias_e_value=308.743	bias_p_value=6.64488e-05	fisher_strand_p_value=5.03429e-06	frequency=3.673553e-02	genotype_quality=1002.7	ks_quality_p_value=1	log10_base_likelihood=-7.7025	log10_qual_likelihood_position_model=20.1308	log10_strand_likelihood_position_model=5.43514	new_cov=0/18	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=150/140	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=150/159
RA	824	.	NC_007779	4516697	0	T	G	bias_e_value=539.211	bias_p_value=0.000116051	fisher_strand_p_value=9.21421e-06	frequency=7.506943e-02	genotype_quality=602.9	ks_quality_p_value=1	log10_base_likelihood=-8.26021	log10_qual_likelihood_position_model=18.4866	log10_strand_likelihood_position_model=5.16167	new_cov=21/2	polymorphism_quality=2.8	quality=2.8	quality_position_model=Inf	ref_cov=84/109	reject=FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=105/111
RA	825	.	NC_007779	4526052	0	T	G	bias_e_value=4.64833e-13	bias_p_value=1.00043e-19	fisher_strand_p_value=2.0571e-21	frequency=6.363916e-02	genotype_quality=736.4	ks_quality_p_value=1	log10_base_likelihood=-5.93985	log10_qual_likelihood_position_model=30.0773	log10_strand_likelihood_position_model=20.6867	new_cov=35/0	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=38/159	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=73/159
RA	826	.	NC_007779	4533946	0	T	G	bias_e_value=1.84887e-06	bias_p_value=3.9792e-13	fisher_strand_p_value=1.20397e-14	frequency=5.350590e-02	genotype_quality=927.4	ks_quality_p_value=1	log10_base_likelihood=-8.26434	log10_qual_likelihood_position_model=29.8545	log10_strand_likelihood_position_model=13.9194	new_cov=36/0	polymorphism_quality=2.8	quality=2.8	quality_position_model=Inf	ref_cov=95/162	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=132/162
RA	827	.	NC_007779	4540870	0	T	G	bias_e_value=5.04834e-41	bias_p_value=1.08652e-47	fisher_strand_p_value=9.54148e-50	frequency=1.969218e-01	genotype_quality=791.3	ks_quality_p_value=1	log10_base_likelihood=-46.5619	log10_qual_likelihood_position_model=59.781	log10_strand_likelihood_position_model=49.0204	new_cov=76/0	polymorphism_quality=41.5	quality=41.5	quality_position_model=Inf	ref_cov=23/192	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=100/192
RA	828	.	NC_007779	4540877	0	A	T	bias_e_value=4.47952e-20	bias_p_value=9.64097e-27	fisher_strand_p_value=1.48142e-28	frequency=1.515012e-01	genotype_quality=887.0	ks_quality_p_value=1	log10_base_likelihood=-44.2558	log10_qual_likelihood_position_model=39.3339	log10_strand_likelihood_position_model=27.8293	new_cov=42/0	polymorphism_quality=39.1	quality=39.1	quality_position_model=Inf	ref_cov=33/190	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=75/190
RA	829	.	NC_007779	4540892	0	T	A	bias_e_value=0.000242088	bias_p_value=5.2103e-11	fisher_strand_p_value=1.86013e-12	frequency=6.821585e-02	genotype_quality=875.2	ks_quality_p_value=1	log10_base_likelihood=-12.1727	log10_qual_likelihood_position_model=24.3963	log10_strand_likelihood_position_model=11.7305	new_cov=20/0	polymorphism_quality=6.8	quality=6.8	quality_position_model=Inf	ref_cov=50/172	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=70/172
RA	830	.	NC_007779	4542789	0	A	C	bias_e_value=4.7781e-09	bias_p_value=1.02836e-15	fisher_strand_p_value=2.62477e-17	frequency=9.357977e-02	genotype_quality=845.8	ks_quality_p_value=1	log10_base_likelihood=-9.1009	log10_qual_likelihood_position_model=33.4385	log10_strand_likelihood_position_model=16.5809	new_cov=0/41	polymorphism_quality=3.6	quality=3.6	quality_position_model=Inf	ref_cov=160/84	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=160/125
RA	831	.	NC_007779	4546535	0	T	A	frequency=1	genotype_quality=1031.0	new_cov=144/108	quality=1031.0	ref_cov=0/0	tot_cov=144/108
RA	832	.	NC_007779	4546837	0	C	T	bias_e_value=4408560	bias_p_value=0.948825	fisher_strand_p_value=1	frequency=1.245975e-02	genotype_quality=1332.7	ks_quality_p_value=0.697635	log10_base_likelihood=-7.10164	log10_qual_likelihood_position_model=1.93458	log10_strand_likelihood_position_model=0.428618	new_cov=2/2	polymorphism_quality=1.6	quality=1.6	quality_position_model=1.29964e-06	ref_cov=145/170	reject=EVALUE	tot_cov=147/172
RA	833	.	NC_007779	4554525	1	.	T	bias_e_value=1272770	bias_p_value=0.273931	fisher_strand_p_value=0.106963	frequency=9.389877e-03	genotype_quality=991.3	ks_quality_p_value=0.718079	log10_base_likelihood=-8.06623	log10_qual_likelihood_position_model=2.16899	log10_strand_likelihood_position_model=0.970768	new_cov=2/0	polymorphism_quality=2.6	quality=2.6	quality_position_model=8.27902e-07	ref_cov=68/143	reject=POLYMORPHISM_STRAND	tot_cov=70/143
RA	834	.	NC_007779	4554532	0	T	C	bias_e_value=4963.84	bias_p_value=0.00106834	fisher_strand_p_value=0.000127113	frequency=4.007626e-02	genotype_quality=596.6	ks_quality_p_value=0.827215	log10_base_likelihood=-8.66147	log10_qual_likelihood_position_model=11.6291	log10_strand_likelihood_position_model=3.91904	new_cov=8/2	polymorphism_quality=3.2	quality=3.2	quality_position_model=Inf	ref_cov=36/148	reject=FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=44/150
RA	835	.	NC_007779	4554534	0	A	C	bias_e_value=2571.45	bias_p_value=0.000553436	fisher_strand_p_value=5.0835e-05	frequency=7.106781e-02	genotype_quality=497.4	ks_quality_p_value=1	log10_base_likelihood=-13.5213	log10_qual_likelihood_position_model=14.2537	log10_strand_likelihood_position_model=4.34188	new_cov=12/6	polymorphism_quality=8.2	quality=8.2	quality_position_model=Inf	ref_cov=32/136	reject=FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=45/144
RA	836	.	NC_007779	4556225	0	C	A	bias_e_value=8791.2	bias_p_value=0.00189207	fisher_strand_p_value=0.000198666	frequency=2.598667e-02	genotype_quality=1077.1	ks_quality_p_value=1	log10_base_likelihood=-5.79505	log10_qual_likelihood_position_model=13.4066	log10_strand_likelihood_position_model=3.87785	new_cov=13/0	polymorphism_quality=0.2	quality=0.2	quality_position_model=Inf	ref_cov=147/152	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=161/153
RA	837	.	NC_007779	4561440	1	.	T	bias_e_value=2823770	bias_p_value=0.607742	fisher_strand_p_value=0.299374	frequency=3.999996e-02	genotype_quality=1013.0	ks_quality_p_value=0.862303	log10_base_likelihood=-40.6177	log10_qual_likelihood_position_model=7.27309	log10_strand_likelihood_position_model=0.851906	new_cov=4/5	polymorphism_quality=35.5	quality=35.5	quality_position_model=9.04992e-35	ref_cov=137/79	reject=INDEL_HOMOPOLYMER	tot_cov=141/84
RA	838	.	NC_007779	4573184	0	T	G	bias_e_value=1.47124e-12	bias_p_value=3.16646e-19	fisher_strand_p_value=6.67238e-21	frequency=9.258270e-02	genotype_quality=944.1	ks_quality_p_value=1	log10_base_likelihood=-11.8049	log10_qual_likelihood_position_model=40.5029	log10_strand_likelihood_position_model=20.1954	new_cov=60/0	polymorphism_quality=6.4	quality=6.4	quality_position_model=Inf	ref_cov=112/165	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=172/165
RA	839	.	NC_007779	4578169	0	G	C	bias_e_value=25.4449	bias_p_value=5.47635e-06	fisher_strand_p_value=3.44855e-07	frequency=3.820515e-02	genotype_quality=742.3	ks_quality_p_value=1	log10_base_likelihood=-9.59179	log10_qual_likelihood_position_model=10.354	log10_strand_likelihood_position_model=6.46236	new_cov=8/0	polymorphism_quality=4.1	quality=4.1	quality_position_model=Inf	ref_cov=24/154	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=33/154
RA	840	.	NC_007779	4578176	0	A	G	bias_e_value=0.0757573	bias_p_value=1.63048e-08	fisher_strand_p_value=7.4032e-10	frequency=5.954123e-02	genotype_quality=748.2	ks_quality_p_value=1	log10_base_likelihood=-13.4452	log10_qual_likelihood_position_model=17.7551	log10_strand_likelihood_position_model=9.13058	new_cov=14/0	polymorphism_quality=8.1	quality=8.1	quality_position_model=Inf	ref_cov=38/158	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=52/158
RA	841	.	NC_007779	4584731	0	G	T	bias_e_value=1.12412	bias_p_value=2.41938e-07	fisher_strand_p_value=1.26082e-08	frequency=3.635693e-02	genotype_quality=970.3	ks_quality_p_value=1	log10_base_likelihood=-6.19314	log10_qual_likelihood_position_model=15.9083	log10_strand_likelihood_position_model=7.89935	new_cov=0/18	polymorphism_quality=0.7	quality=0.7	quality_position_model=Inf	ref_cov=184/96	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=184/115
RA	842	.	NC_007779	4587189	0	G	C	bias_e_value=0.483793	bias_p_value=1.04124e-07	fisher_strand_p_value=5.18614e-09	frequency=4.582596e-02	genotype_quality=925.5	ks_quality_p_value=1	log10_base_likelihood=-6.3514	log10_qual_likelihood_position_model=17.0923	log10_strand_likelihood_position_model=8.28516	new_cov=0/23	polymorphism_quality=0.8	quality=0.8	quality_position_model=Inf	ref_cov=156/109	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=156/133
RA	843	.	NC_007779	4610781	0	A	C	bias_e_value=2.15261e-05	bias_p_value=4.63292e-12	fisher_strand_p_value=1.51819e-13	frequency=6.860638e-02	genotype_quality=1009.6	ks_quality_p_value=1	log10_base_likelihood=-27.3791	log10_qual_likelihood_position_model=27.5064	log10_strand_likelihood_position_model=12.8187	new_cov=0/33	polymorphism_quality=22.2	quality=22.2	quality_position_model=Inf	ref_cov=180/108	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=180/141
RA	844	.	NC_007779	4610887	1	.	G	bias_e_value=4094760	bias_p_value=0.881288	fisher_strand_p_value=1	frequency=8.096695e-03	genotype_quality=1196.5	ks_quality_p_value=0.55417	log10_base_likelihood=-8.11369	log10_qual_likelihood_position_model=1.52884	log10_strand_likelihood_position_model=0.306164	new_cov=1/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=3.28535e-08	ref_cov=138/107	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=139/108
RA	845	.	NC_007779	4615146	0	T	G	bias_e_value=0.00335044	bias_p_value=7.21094e-10	fisher_strand_p_value=2.8524e-11	frequency=5.940580e-02	genotype_quality=557.2	ks_quality_p_value=1	log10_base_likelihood=-17.6975	log10_qual_likelihood_position_model=9.97287	log10_strand_likelihood_position_model=10.5448	new_cov=10/0	polymorphism_quality=12.4	quality=12.4	quality_position_model=Inf	ref_cov=8/136	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=18/136
RA	846	.	NC_007779	4635770	0	G	T	bias_e_value=1278.79	bias_p_value=0.000275225	fisher_strand_p_value=2.36173e-05	frequency=5.428791e-02	genotype_quality=763.2	ks_quality_p_value=1	log10_base_likelihood=-11.0335	log10_qual_likelihood_position_model=12.3525	log10_strand_likelihood_position_model=4.82666	new_cov=0/21	polymorphism_quality=5.6	quality=5.6	quality_position_model=Inf	ref_cov=108/144	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=109/166
RA	847	.	NC_007779	4636470	0	C	G	bias_e_value=1.65603e-22	bias_p_value=3.56416e-29	fisher_strand_p_value=5.03672e-31	frequency=2.161784e-01	genotype_quality=624.8	ks_quality_p_value=1	log10_base_likelihood=-73.1769	log10_qual_likelihood_position_model=36.8975	log10_strand_likelihood_position_model=30.2979	new_cov=49/0	polymorphism_quality=68.2	quality=68.2	quality_position_model=6.66262e-08	ref_cov=24/146	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=73/146
RA	848	.	NC_007779	4636473	0	A	G	bias_e_value=0.0647356	bias_p_value=1.39326e-08	fisher_strand_p_value=6.28409e-10	frequency=5.764866e-02	genotype_quality=596.8	ks_quality_p_value=0.999218	log10_base_likelihood=-11.134	log10_qual_likelihood_position_model=14.0471	log10_strand_likelihood_position_model=9.20176	new_cov=10/0	polymorphism_quality=5.7	quality=5.7	quality_position_model=Inf	ref_cov=14/141	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=24/141
RA	849	.	NC_007779	4644244	1	.	T	bias_e_value=3859090	bias_p_value=0.830568	fisher_strand_p_value=0.50313	frequency=6.492615e-03	genotype_quality=1479.4	ks_quality_p_value=0.949338	log10_base_likelihood=-7.28696	log10_qual_likelihood_position_model=3.05141	log10_strand_likelihood_position_model=0.522493	new_cov=2/0	polymorphism_quality=1.8	quality=1.8	quality_position_model=1.54074e-05	ref_cov=167/139	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=169/139
MC	850	.	NC_007779	274733	371972	0	0	left_inside_cov=0	left_outside_cov=241	right_inside_cov=0	right_outside_cov=241
MC	851	.	NC_007779	1288293	1288518	96	59	left_inside_cov=204	left_outside_cov=209	right_inside_cov=206	right_outside_cov=210
MC	852	.	NC_007779	1301041	1302376	1326	0	left_inside_cov=0	left_outside_cov=311	right_inside_cov=0	right_outside_cov=307
MC	853	.	NC_007779	1413639	1436698	0	0	left_inside_cov=0	left_outside_cov=318	right_inside_cov=0	right_outside_cov=315
MC	854	.	NC_007779	2176983	2178208	0	0	left_inside_cov=0	left_outside_cov=348	right_inside_cov=0	right_outside_cov=269
MC	855	.	NC_007779	2320795	2322130	1329	0	left_inside_cov=0	left_outside_cov=320	right_inside_cov=0	right_outside_cov=322
MC	856	.	NC_007779	3128840	3147473	1162	0	left_inside_cov=201	left_outside_cov=210	right_inside_cov=0	right_outside_cov=467
MC	857	.	NC_007779	3261134	3262337	1198	0	left_inside_cov=0	left_outside_cov=290	right_inside_cov=0	right_outside_cov=465
MC	858	.	NC_007779	3742936	3744271	1327	0	left_inside_cov=0	left_outside_cov=352	right_inside_cov=0	right_outside_cov=349
MC	859	.	NC_007779	3750591	3751789	1196	0	left_inside_cov=0	left_outside_cov=359	right_inside_cov=0	right_outside_cov=359
MC	860	.	NC_007779	3958123	3958156	0	0	left_inside_cov=0	left_outside_cov=296	right_inside_cov=0	right_outside_cov=293
MC	861	.	NC_007779	4310363	4311561	0	0	left_inside_cov=3	left_outside_cov=320	right_inside_cov=0	right_outside_cov=318
JC	862	.	NC_007779	1	1	NC_007779	4646332	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=129	coverage_plus=145	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__1__1__NC_007779__4646332__-1__0____101__101__0__0	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=94	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.01	new_junction_frequency=1.000000e+00	new_junction_read_count=275	pos_hash_score=135	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=274
JC	863	.	NC_007779	15391	1	NC_007779	458023	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=8	flanking_left=101	flanking_right=101	frequency=3.166784e-02	junction_possible_overlap_registers=86	key=NC_007779__15387__1__NC_007779__458023__-1__4____101__101__1__0	max_left=81	max_left_minus=45	max_left_plus=81	max_min_left=46	max_min_left_minus=45	max_min_left_plus=46	max_min_right=39	max_min_right_minus=0	max_min_right_plus=39	max_pos_hash_score=172	max_right=83	max_right_minus=52	max_right_plus=83	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.03	new_junction_frequency=3.166784e-02	new_junction_read_count=9	pos_hash_score=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=4	side_2_possible_overlap_registers=90	side_2_read_count=288	side_2_redundant=0	total_non_overlap_reads=9
JC	864	.	NC_007779	49661	1	NC_007779	273179	1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=15	flanking_left=101	flanking_right=101	frequency=1.178344e-01	junction_possible_overlap_registers=90	key=NC_007779__49661__1__NC_007779__273179__1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=93	max_min_left=49	max_min_left_minus=40	max_min_left_plus=49	max_min_right=48	max_min_right_minus=48	max_min_right_plus=42	max_pos_hash_score=180	max_right=89	max_right_minus=89	max_right_plus=89	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.14	new_junction_frequency=1.178344e-01	new_junction_read_count=37	pos_hash_score=34	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=277	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=35
JC	865	.	NC_007779	49664	-1	NC_007779	274373	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=8	flanking_left=101	flanking_right=101	frequency=6.270627e-02	junction_possible_overlap_registers=90	key=NC_007779__49664__-1__NC_007779__274373__-1__0____101__101__0__1	max_left=92	max_left_minus=92	max_left_plus=80	max_min_left=50	max_min_left_minus=50	max_min_left_plus=47	max_min_right=46	max_min_right_minus=46	max_min_right_plus=29	max_pos_hash_score=180	max_right=92	max_right_minus=80	max_right_plus=92	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.07	new_junction_frequency=6.270627e-02	new_junction_read_count=19	pos_hash_score=14	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=284	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=16
JC	866	.	NC_007779	273179	1	NC_007779	657877	1	0	alignment_overlap=0	coverage_minus=91	coverage_plus=89	flanking_left=101	flanking_right=101	frequency=6.453901e-01	junction_possible_overlap_registers=90	key=NC_007779__273179__1__NC_007779__657877__1__0____101__101__1__0	max_left=95	max_left_minus=95	max_left_plus=93	max_min_left=50	max_min_left_minus=49	max_min_left_plus=50	max_min_right=47	max_min_right_minus=46	max_min_right_plus=47	max_pos_hash_score=180	max_right=94	max_right_minus=94	max_right_plus=92	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.67	new_junction_frequency=6.453901e-01	new_junction_read_count=182	pos_hash_score=112	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.37	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=100	side_2_redundant=0	total_non_overlap_reads=180
JC	867	.	NC_007779	274373	-1	NC_007779	657880	-1	0	alignment_overlap=0	coverage_minus=77	coverage_plus=80	flanking_left=101	flanking_right=101	frequency=6.220472e-01	junction_possible_overlap_registers=90	key=NC_007779__274373__-1__NC_007779__657880__-1__0____101__101__1__0	max_left=83	max_left_minus=83	max_left_plus=83	max_min_left=50	max_min_left_minus=50	max_min_left_plus=49	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=94	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.58	new_junction_frequency=6.220472e-01	new_junction_read_count=158	pos_hash_score=97	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.35	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=157
JC	868	.	NC_007779	274732	-1	NC_007779	371973	1	0	alignment_overlap=8	coverage_minus=87	coverage_plus=114	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=80	key=NC_007779__274732__-1__NC_007779__371965__1__8____101__101__0__0	max_left=87	max_left_minus=87	max_left_plus=84	max_min_left=46	max_min_left_minus=46	max_min_left_plus=46	max_min_right=46	max_min_right_minus=46	max_min_right_plus=46	max_pos_hash_score=160	max_right=87	max_right_minus=87	max_right_plus=87	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.82	new_junction_frequency=1.000000e+00	new_junction_read_count=200	pos_hash_score=115	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=2	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=80	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=201
JC	869	.	NC_007779	289856	1	NC_007779	2176982	-1	-33	alignment_overlap=-33	coverage_minus=125	coverage_plus=100	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=57	key=NC_007779__289856__1__NC_007779__2176982__-1__-33__CTATTGCAATACCGCATTGTGAGGCGATTCATG__101__101__1__0	max_left=62	max_left_minus=62	max_left_plus=62	max_min_left=33	max_min_left_minus=33	max_min_left_plus=33	max_min_right=34	max_min_right_minus=33	max_min_right_plus=34	max_pos_hash_score=114	max_right=62	max_right_minus=62	max_right_plus=62	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.31	new_junction_frequency=1.000000e+00	new_junction_read_count=226	pos_hash_score=98	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=225	unique_read_sequence=CTATTGCAATACCGCATTGTGAGGCGATTCATG
JC	870	.	NC_007779	380484	1	NC_007779	381407	-1	0	alignment_overlap=0	coverage_minus=133	coverage_plus=109	flanking_left=101	flanking_right=101	frequency=NA	junction_possible_overlap_registers=90	key=NC_007779__380484__1__NC_007779__381407__-1__0____101__101__1__1	max_left=94	max_left_minus=90	max_left_plus=94	max_min_left=50	max_min_left_minus=49	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.89	new_junction_frequency=NA	new_junction_read_count=244	pos_hash_score=120	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=242
JC	871	.	NC_007779	381401	1	NC_007779	381812	-1	0	alignment_overlap=2	coverage_minus=124	coverage_plus=125	flanking_left=101	flanking_right=101	frequency=NA	junction_possible_overlap_registers=88	key=NC_007779__381401__1__NC_007779__381814__-1__2____101__101__1__1	max_left=93	max_left_minus=93	max_left_plus=92	max_min_left=49	max_min_left_minus=49	max_min_left_plus=49	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=176	max_right=93	max_right_minus=93	max_right_plus=93	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.93	new_junction_frequency=NA	new_junction_read_count=249	pos_hash_score=123	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=249
JC	872	.	NC_007779	458011	1	NC_007779	608570	-1	0	alignment_overlap=3	coverage_minus=11	coverage_plus=2	flanking_left=101	flanking_right=101	frequency=4.567280e-02	junction_possible_overlap_registers=87	key=NC_007779__458011__1__NC_007779__608573__-1__3____101__101__0__1	max_left=89	max_left_minus=89	max_left_plus=83	max_min_left=34	max_min_left_minus=34	max_min_left_plus=0	max_min_right=38	max_min_right_minus=35	max_min_right_plus=38	max_pos_hash_score=174	max_right=80	max_right_minus=80	max_right_plus=38	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.05	new_junction_frequency=4.567280e-02	new_junction_read_count=13	pos_hash_score=11	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=3	side_1_possible_overlap_registers=90	side_1_read_count=281	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=13
JC	873	.	NC_007779	608570	-1	NC_007779	1305025	1	0	alignment_overlap=3	coverage_minus=106	coverage_plus=134	flanking_left=101	flanking_right=101	frequency=9.223115e-01	junction_possible_overlap_registers=87	key=NC_007779__608573__-1__NC_007779__1305025__1__3____101__101__1__0	max_left=92	max_left_minus=91	max_left_plus=92	max_min_left=48	max_min_left_minus=48	max_min_left_plus=48	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=174	max_right=92	max_right_minus=92	max_right_plus=92	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.91	new_junction_frequency=9.223115e-01	new_junction_read_count=241	pos_hash_score=129	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.08	side_2_overlap=3	side_2_possible_overlap_registers=90	side_2_read_count=21	side_2_redundant=0	total_non_overlap_reads=240
JC	874	.	NC_007779	654213	-1	NC_007779	655413	1	0	alignment_overlap=5	coverage_minus=127	coverage_plus=116	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=85	key=NC_007779__654213__-1__NC_007779__655408__1__5____101__101__0__0	max_left=90	max_left_minus=89	max_left_plus=90	max_min_left=47	max_min_left_minus=47	max_min_left_plus=47	max_min_right=48	max_min_right_minus=48	max_min_right_plus=47	max_pos_hash_score=170	max_right=90	max_right_minus=90	max_right_plus=90	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.94	new_junction_frequency=1.000000e+00	new_junction_read_count=243	pos_hash_score=132	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=85	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=243
JC	875	.	NC_007779	1209367	1	NC_007779	1211196	1	0	alignment_overlap=16	coverage_minus=17	coverage_plus=31	flanking_left=101	flanking_right=101	frequency=2.315568e-01	junction_possible_overlap_registers=74	key=NC_007779__1209367__1__NC_007779__1211180__1__16____101__101__0__0	max_left=77	max_left_minus=53	max_left_plus=77	max_min_left=42	max_min_left_minus=42	max_min_left_plus=40	max_min_right=41	max_min_right_minus=41	max_min_right_plus=41	max_pos_hash_score=148	max_right=79	max_right_minus=79	max_right_plus=79	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.22	new_junction_frequency=2.315568e-01	new_junction_read_count=49	pos_hash_score=40	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=16	side_1_possible_overlap_registers=90	side_1_read_count=190	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=74	side_2_read_count=169	side_2_redundant=0	total_non_overlap_reads=48
JC	876	.	NC_007779	1209382	-1	NC_007779	1211179	-1	0	alignment_overlap=16	coverage_minus=29	coverage_plus=26	flanking_left=101	flanking_right=101	frequency=2.556422e-01	junction_possible_overlap_registers=74	key=NC_007779__1209382__-1__NC_007779__1211195__-1__16____101__101__0__0	max_left=74	max_left_minus=73	max_left_plus=74	max_min_left=41	max_min_left_minus=41	max_min_left_plus=39	max_min_right=40	max_min_right_minus=40	max_min_right_plus=38	max_pos_hash_score=148	max_right=78	max_right_minus=78	max_right_plus=77	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.24	new_junction_frequency=2.556422e-01	new_junction_read_count=55	pos_hash_score=45	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=16	side_1_possible_overlap_registers=90	side_1_read_count=184	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=74	side_2_read_count=169	side_2_redundant=0	total_non_overlap_reads=55
JC	877	.	NC_007779	1221489	1	NC_007779	1301041	1	0	alignment_overlap=2	coverage_minus=128	coverage_plus=120	flanking_left=101	flanking_right=101	frequency=9.658650e-01	junction_possible_overlap_registers=88	key=NC_007779__1221489__1__NC_007779__1301039__1__2____101__101__0__1	max_left=93	max_left_minus=93	max_left_plus=93	max_min_left=49	max_min_left_minus=49	max_min_left_plus=49	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=176	max_right=84	max_right_minus=84	max_right_plus=82	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.93	new_junction_frequency=9.658650e-01	new_junction_read_count=249	pos_hash_score=125	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=2	side_1_possible_overlap_registers=90	side_1_read_count=9	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=248
JC	878	.	NC_007779	1221495	-1	NC_007779	1302369	-1	0	alignment_overlap=0	coverage_minus=118	coverage_plus=87	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__1221495__-1__NC_007779__1302369__-1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=88	max_right_minus=88	max_right_plus=88	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.75	new_junction_frequency=1.000000e+00	new_junction_read_count=206	pos_hash_score=110	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=205
JC	879	.	NC_007779	1301040	-1	NC_007779	1302377	1	0	alignment_overlap=7	coverage_minus=113	coverage_plus=135	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=83	key=NC_007779__1301040__-1__NC_007779__1302370__1__7____101__101__0__0	max_left=88	max_left_minus=87	max_left_plus=88	max_min_left=46	max_min_left_minus=46	max_min_left_plus=46	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=166	max_right=88	max_right_minus=88	max_right_plus=88	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.99	new_junction_frequency=1.000000e+00	new_junction_read_count=249	pos_hash_score=127	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=83	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=248
JC	880	.	NC_007779	1305037	-1	NC_007779	2519723	1	0	alignment_overlap=4	coverage_minus=120	coverage_plus=117	flanking_left=101	flanking_right=101	frequency=9.253796e-01	junction_possible_overlap_registers=86	key=NC_007779__1305037__-1__NC_007779__2519719__1__4____101__101__0__1	max_left=91	max_left_minus=91	max_left_plus=91	max_min_left=48	max_min_left_minus=47	max_min_left_plus=48	max_min_right=48	max_min_right_minus=48	max_min_right_plus=48	max_pos_hash_score=172	max_right=90	max_right_minus=90	max_right_plus=90	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.91	new_junction_frequency=9.253796e-01	new_junction_read_count=237	pos_hash_score=134	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.07	side_1_overlap=4	side_1_possible_overlap_registers=90	side_1_read_count=20	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=237
JC	881	.	NC_007779	1397758	1	NC_007779	1672777	1	0	alignment_overlap=0	coverage_minus=98	coverage_plus=135	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__1397758__1__NC_007779__1672777__1__0____101__101__1__0	max_left=87	max_left_minus=87	max_left_plus=87	max_min_left=50	max_min_left_minus=50	max_min_left_plus=48	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=94	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.86	new_junction_frequency=1.000000e+00	new_junction_read_count=235	pos_hash_score=122	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=233
JC	882	.	NC_007779	1413638	-1	NC_007779	1436699	1	0	alignment_overlap=26	coverage_minus=86	coverage_plus=94	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=64	key=NC_007779__1413638__-1__NC_007779__1436673__1__26____101__101__0__0	max_left=69	max_left_minus=69	max_left_plus=69	max_min_left=36	max_min_left_minus=35	max_min_left_plus=36	max_min_right=37	max_min_right_minus=37	max_min_right_plus=36	max_pos_hash_score=128	max_right=69	max_right_minus=69	max_right_plus=69	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.94	new_junction_frequency=1.000000e+00	new_junction_read_count=183	pos_hash_score=98	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=64	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=180
JC	883	.	NC_007779	1672780	-1	NC_007779	1980209	1	0	alignment_overlap=0	coverage_minus=134	coverage_plus=101	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__1672780__-1__NC_007779__1980209__1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=94	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=85	max_right_minus=84	max_right_plus=85	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.86	new_junction_frequency=1.000000e+00	new_junction_read_count=236	pos_hash_score=120	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=235
JC	884	.	NC_007779	1907280	1	NC_007779	2412225	-1	0	alignment_overlap=0	coverage_minus=113	coverage_plus=103	flanking_left=101	flanking_right=101	frequency=9.515419e-01	junction_possible_overlap_registers=90	key=NC_007779__1907280__1__NC_007779__2412225__-1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=49	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=49	max_pos_hash_score=180	max_right=90	max_right_minus=90	max_right_plus=87	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.79	new_junction_frequency=9.515419e-01	new_junction_read_count=216	pos_hash_score=118	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=216
JC	885	.	NC_007779	1907288	-1	NC_007779	2411458	1	0	alignment_overlap=0	coverage_minus=121	coverage_plus=135	flanking_left=101	flanking_right=101	frequency=9.552239e-01	junction_possible_overlap_registers=90	key=NC_007779__1907288__-1__NC_007779__2411458__1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=49	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.94	new_junction_frequency=9.552239e-01	new_junction_read_count=256	pos_hash_score=134	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=12	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=256
JC	886	.	NC_007779	1980091	1	NC_007779	1980209	1	0	alignment_overlap=0	coverage_minus=138	coverage_plus=57	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__1980091__1__NC_007779__1980209__1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=49	max_min_left_plus=50	max_min_right=49	max_min_right_minus=49	max_min_right_plus=45	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=93	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.72	new_junction_frequency=1.000000e+00	new_junction_read_count=196	pos_hash_score=97	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=195
JC	887	.	NC_007779	1980095	-1	NC_007779	2176984	1	0	alignment_overlap=1	coverage_minus=136	coverage_plus=121	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=89	key=NC_007779__1980095__-1__NC_007779__2176983__1__1____101__101__0__1	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=49	max_min_left_minus=49	max_min_left_plus=49	max_min_right=50	max_min_right_minus=50	max_min_right_plus=48	max_pos_hash_score=178	max_right=92	max_right_minus=92	max_right_plus=92	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.95	new_junction_frequency=1.000000e+00	new_junction_read_count=258	pos_hash_score=128	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=257
JC	888	.	NC_007779	2178209	1	NC_007779	2412225	-1	0	alignment_overlap=0	coverage_minus=120	coverage_plus=128	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__2178209__1__NC_007779__2412225__-1__0____101__101__0__1	max_left=95	max_left_minus=94	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=90	max_right_minus=89	max_right_plus=90	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.91	new_junction_frequency=1.000000e+00	new_junction_read_count=248	pos_hash_score=125	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=248
JC	889	.	NC_007779	2320794	-1	NC_007779	2322131	1	0	alignment_overlap=6	coverage_minus=129	coverage_plus=138	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=84	key=NC_007779__2320794__-1__NC_007779__2322125__1__6____101__101__0__0	max_left=89	max_left_minus=89	max_left_plus=89	max_min_left=47	max_min_left_minus=47	max_min_left_plus=47	max_min_right=47	max_min_right_minus=45	max_min_right_plus=47	max_pos_hash_score=168	max_right=88	max_right_minus=88	max_right_plus=88	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.05	new_junction_frequency=1.000000e+00	new_junction_read_count=267	pos_hash_score=134	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=84	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=267
JC	890	.	NC_007779	2320794	1	NC_007779	2589834	-1	0	alignment_overlap=0	coverage_minus=85	coverage_plus=191	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__2320794__1__NC_007779__2589834__-1__0____101__101__1__0	max_left=84	max_left_minus=84	max_left_plus=82	max_min_left=50	max_min_left_minus=49	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.01	new_junction_frequency=1.000000e+00	new_junction_read_count=276	pos_hash_score=120	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=276
JC	891	.	NC_007779	2322124	-1	NC_007779	2589830	1	0	alignment_overlap=0	coverage_minus=153	coverage_plus=176	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__2322124__-1__NC_007779__2589830__1__0____101__101__1__0	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=48	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.20	new_junction_frequency=1.000000e+00	new_junction_read_count=329	pos_hash_score=150	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=329
JC	892	.	NC_007779	2411458	1	NC_007779	2985055	-1	0	alignment_overlap=0	coverage_minus=154	coverage_plus=142	flanking_left=101	flanking_right=101	frequency=9.769737e-01	junction_possible_overlap_registers=90	key=NC_007779__2411458__1__NC_007779__2985055__-1__0____101__101__1__0	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=48	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=94	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.09	new_junction_frequency=9.769737e-01	new_junction_read_count=297	pos_hash_score=141	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=7	side_2_redundant=0	total_non_overlap_reads=296
JC	893	.	NC_007779	2412225	-1	NC_007779	2985047	1	0	alignment_overlap=0	coverage_minus=131	coverage_plus=147	flanking_left=101	flanking_right=101	frequency=9.493243e-01	junction_possible_overlap_registers=90	key=NC_007779__2412225__-1__NC_007779__2985047__1__0____101__101__1__0	max_left=95	max_left_minus=94	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=94	max_right_minus=94	max_right_plus=94	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.03	new_junction_frequency=9.493243e-01	new_junction_read_count=281	pos_hash_score=140	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=15	side_2_redundant=0	total_non_overlap_reads=278
JC	894	.	NC_007779	2865229	1	NC_007779	2865274	-1	0	alignment_overlap=4	coverage_minus=126	coverage_plus=109	flanking_left=101	flanking_right=101	frequency=6.798478e-01	junction_possible_overlap_registers=86	key=NC_007779__2865229__1__NC_007779__2865278__-1__4____101__101__0__0	max_left=91	max_left_minus=91	max_left_plus=91	max_min_left=48	max_min_left_minus=48	max_min_left_plus=47	max_min_right=48	max_min_right_minus=46	max_min_right_plus=48	max_pos_hash_score=172	max_right=91	max_right_minus=91	max_right_plus=91	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.01	new_junction_frequency=6.798478e-01	new_junction_read_count=264	pos_hash_score=130	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=4	side_1_possible_overlap_registers=90	side_1_read_count=143	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.43	side_2_overlap=0	side_2_possible_overlap_registers=86	side_2_read_count=112	side_2_redundant=0	total_non_overlap_reads=235
JC	895	.	NC_007779	2865229	1	NC_007779	2865278	-1	-42	alignment_overlap=-42	coverage_minus=26	coverage_plus=14	flanking_left=101	flanking_right=101	frequency=3.571429e-01	junction_possible_overlap_registers=48	key=NC_007779__2865229__1__NC_007779__2865278__-1__-42__CGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAA__101__101__0__0	max_left=42	max_left_minus=42	max_left_plus=41	max_min_left=28	max_min_left_minus=27	max_min_left_plus=28	max_min_right=28	max_min_right_minus=28	max_min_right_plus=27	max_pos_hash_score=96	max_right=44	max_right_minus=44	max_right_plus=44	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.27	new_junction_frequency=3.571429e-01	new_junction_read_count=40	pos_hash_score=29	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.52	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=143	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.46	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=40	unique_read_sequence=CGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAA
JC	896	.	NC_007779	2941530	-1	NC_007779	4056221	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=1	flanking_left=101	flanking_right=101	frequency=9.720447e-03	junction_possible_overlap_registers=89	key=NC_007779__2941530__-1__NC_007779__4056220__1__1____101__101__0__0	max_left=42	max_left_minus=24	max_left_plus=42	max_min_left=42	max_min_left_minus=24	max_min_left_plus=42	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=178	max_right=86	max_right_minus=86	max_right_plus=58	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.01	new_junction_frequency=9.720447e-03	new_junction_read_count=3	pos_hash_score=3	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.23	side_1_overlap=1	side_1_possible_overlap_registers=90	side_1_read_count=337	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=89	side_2_read_count=278	side_2_redundant=0	total_non_overlap_reads=3
JC	897	.	NC_007779	3147474	1	NC_007779	3262328	-1	0	alignment_overlap=0	coverage_minus=151	coverage_plus=151	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3147474__1__NC_007779__3262328__-1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.11	new_junction_frequency=1.000000e+00	new_junction_read_count=303	pos_hash_score=154	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=302
JC	898	.	NC_007779	3186081	-1	NC_007779	3512753	1	0	alignment_overlap=1	coverage_minus=164	coverage_plus=145	flanking_left=101	flanking_right=101	frequency=9.936605e-01	junction_possible_overlap_registers=89	key=NC_007779__3186082__-1__NC_007779__3512753__1__1____101__101__1__0	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=49	max_min_left_minus=49	max_min_left_plus=49	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=178	max_right=94	max_right_minus=94	max_right_plus=94	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.15	new_junction_frequency=9.936605e-01	new_junction_read_count=310	pos_hash_score=141	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=1	side_2_possible_overlap_registers=90	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=309
JC	899	.	NC_007779	3261133	-1	NC_007779	3748109	-1	-6	alignment_overlap=-6	coverage_minus=131	coverage_plus=129	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=84	key=NC_007779__3261133__-1__NC_007779__3748109__-1__-6__CTTTGC__101__101__0__1	max_left=89	max_left_minus=89	max_left_plus=89	max_min_left=47	max_min_left_minus=47	max_min_left_plus=46	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=168	max_right=89	max_right_minus=89	max_right_plus=89	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.03	new_junction_frequency=1.000000e+00	new_junction_read_count=263	pos_hash_score=134	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=260	unique_read_sequence=CTTTGC
JC	900	.	NC_007779	3261134	1	NC_007779	3265774	1	0	alignment_overlap=0	coverage_minus=126	coverage_plus=114	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3261134__1__NC_007779__3265774__1__0____101__101__1__0	max_left=86	max_left_minus=86	max_left_plus=83	max_min_left=50	max_min_left_minus=50	max_min_left_plus=49	max_min_right=50	max_min_right_minus=48	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.88	new_junction_frequency=1.000000e+00	new_junction_read_count=241	pos_hash_score=124	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=240
JC	901	.	NC_007779	3261135	1	NC_007779	3262338	1	0	alignment_overlap=1	coverage_minus=151	coverage_plus=152	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=89	key=NC_007779__3261134__1__NC_007779__3262338__1__1____101__101__1__0	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=49	max_min_left_minus=48	max_min_left_plus=49	max_min_right=50	max_min_right_minus=49	max_min_right_plus=50	max_pos_hash_score=178	max_right=94	max_right_minus=94	max_right_plus=94	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.12	new_junction_frequency=1.000000e+00	new_junction_read_count=304	pos_hash_score=144	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=303
JC	902	.	NC_007779	3265777	-1	NC_007779	3365411	1	0	alignment_overlap=0	coverage_minus=167	coverage_plus=136	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3265777__-1__NC_007779__3365411__1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=49	max_min_right=50	max_min_right_minus=49	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.11	new_junction_frequency=1.000000e+00	new_junction_read_count=303	pos_hash_score=145	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=303
JC	903	.	NC_007779	3512759	-1	NC_007779	3744262	-1	0	alignment_overlap=1	coverage_minus=108	coverage_plus=141	flanking_left=101	flanking_right=101	frequency=9.883187e-01	junction_possible_overlap_registers=89	key=NC_007779__3512759__-1__NC_007779__3744263__-1__1____101__101__0__1	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=49	max_min_left_minus=48	max_min_left_plus=49	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=178	max_right=84	max_right_minus=84	max_right_plus=84	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.93	new_junction_frequency=9.883187e-01	new_junction_read_count=251	pos_hash_score=121	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=1	side_1_possible_overlap_registers=90	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=249
JC	904	.	NC_007779	3742935	-1	NC_007779	3744272	1	0	alignment_overlap=8	coverage_minus=161	coverage_plus=129	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=82	key=NC_007779__3742935__-1__NC_007779__3744264__1__8____101__101__0__0	max_left=87	max_left_minus=87	max_left_plus=87	max_min_left=46	max_min_left_minus=46	max_min_left_plus=46	max_min_right=46	max_min_right_minus=46	max_min_right_plus=46	max_pos_hash_score=164	max_right=87	max_right_minus=86	max_right_plus=87	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.16	new_junction_frequency=1.000000e+00	new_junction_read_count=290	pos_hash_score=129	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=82	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=290
JC	905	.	NC_007779	3744263	-1	NC_007779	3903274	1	0	alignment_overlap=0	coverage_minus=138	coverage_plus=120	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3744263__-1__NC_007779__3903274__1__0____101__101__1__0	max_left=88	max_left_minus=87	max_left_plus=88	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=49	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.94	new_junction_frequency=1.000000e+00	new_junction_read_count=258	pos_hash_score=130	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=258
JC	906	.	NC_007779	3746910	-1	NC_007779	3748110	1	0	alignment_overlap=4	coverage_minus=151	coverage_plus=133	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=86	key=NC_007779__3746910__-1__NC_007779__3748106__1__4____101__101__0__0	max_left=91	max_left_minus=91	max_left_plus=90	max_min_left=47	max_min_left_minus=46	max_min_left_plus=47	max_min_right=48	max_min_right_minus=47	max_min_right_plus=48	max_pos_hash_score=172	max_right=91	max_right_minus=91	max_right_plus=91	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.10	new_junction_frequency=1.000000e+00	new_junction_read_count=287	pos_hash_score=136	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=86	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=284
JC	907	.	NC_007779	3746911	1	NC_007779	3748646	-1	0	alignment_overlap=0	coverage_minus=128	coverage_plus=134	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3746911__1__NC_007779__3748646__-1__0____101__101__1__0	max_left=92	max_left_minus=92	max_left_plus=92	max_min_left=50	max_min_left_minus=50	max_min_left_plus=49	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=94	max_right_minus=94	max_right_plus=94	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.10	new_junction_frequency=1.000000e+00	new_junction_read_count=301	pos_hash_score=134	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=262
JC	908	.	NC_007779	3748105	-1	NC_007779	3748643	1	0	alignment_overlap=0	coverage_minus=152	coverage_plus=119	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3748105__-1__NC_007779__3748643__1__0____101__101__1__0	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=49	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.99	new_junction_frequency=1.000000e+00	new_junction_read_count=272	pos_hash_score=134	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=271
JC	909	.	NC_007779	3750590	-1	NC_007779	3751790	1	0	alignment_overlap=4	coverage_minus=159	coverage_plus=150	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=86	key=NC_007779__3750590__-1__NC_007779__3751786__1__4____101__101__0__0	max_left=91	max_left_minus=91	max_left_plus=91	max_min_left=48	max_min_left_minus=48	max_min_left_plus=48	max_min_right=48	max_min_right_minus=48	max_min_right_plus=47	max_pos_hash_score=172	max_right=91	max_right_minus=88	max_right_plus=91	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.19	new_junction_frequency=1.000000e+00	new_junction_read_count=311	pos_hash_score=147	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=86	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=309
JC	910	.	NC_007779	3903279	-1	NC_007779	4504190	-1	0	alignment_overlap=1	coverage_minus=151	coverage_plus=140	flanking_left=101	flanking_right=101	frequency=9.800850e-01	junction_possible_overlap_registers=89	key=NC_007779__3903279__-1__NC_007779__4504191__-1__1____101__101__0__1	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=49	max_min_left_minus=49	max_min_left_plus=49	max_min_right=50	max_min_right_minus=49	max_min_right_plus=50	max_pos_hash_score=178	max_right=94	max_right_minus=94	max_right_plus=94	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.08	new_junction_frequency=9.800850e-01	new_junction_read_count=292	pos_hash_score=137	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=1	side_1_possible_overlap_registers=90	side_1_read_count=6	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=291
JC	911	.	NC_007779	3958122	-1	NC_007779	3958157	1	0	alignment_overlap=2	coverage_minus=132	coverage_plus=120	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=88	key=NC_007779__3958122__-1__NC_007779__3958155__1__2____101__101__0__0	max_left=93	max_left_minus=93	max_left_plus=91	max_min_left=49	max_min_left_minus=49	max_min_left_plus=49	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=176	max_right=93	max_right_minus=93	max_right_plus=93	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.94	new_junction_frequency=1.000000e+00	new_junction_read_count=252	pos_hash_score=130	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=88	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=252
JC	912	.	NC_007779	3987186	1	NC_007779	4009203	-1	0	alignment_overlap=1	coverage_minus=155	coverage_plus=127	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=89	key=NC_007779__3987185__1__NC_007779__4009203__-1__1____101__101__1__0	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=49	max_min_left_minus=49	max_min_left_plus=49	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=178	max_right=94	max_right_minus=94	max_right_plus=94	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.05	new_junction_frequency=1.000000e+00	new_junction_read_count=283	pos_hash_score=142	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=282
JC	913	.	NC_007779	3988379	-1	NC_007779	4009199	1	0	alignment_overlap=0	coverage_minus=145	coverage_plus=137	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3988379__-1__NC_007779__4009199__1__0____101__101__1__0	max_left=86	max_left_minus=85	max_left_plus=86	max_min_left=50	max_min_left_minus=50	max_min_left_plus=47	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=94	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.04	new_junction_frequency=1.000000e+00	new_junction_read_count=284	pos_hash_score=128	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=282
JC	914	.	NC_007779	4310362	-1	NC_007779	4311562	1	0	alignment_overlap=4	coverage_minus=151	coverage_plus=130	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=86	key=NC_007779__4310362__-1__NC_007779__4311558__1__4____101__101__0__0	max_left=91	max_left_minus=90	max_left_plus=91	max_min_left=48	max_min_left_minus=46	max_min_left_plus=48	max_min_right=48	max_min_right_minus=48	max_min_right_plus=48	max_pos_hash_score=172	max_right=91	max_right_minus=91	max_right_plus=91	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.08	new_junction_frequency=1.000000e+00	new_junction_read_count=281	pos_hash_score=141	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=86	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=281
JC	915	.	NC_007779	4310363	1	NC_007779	4353540	1	0	alignment_overlap=0	coverage_minus=163	coverage_plus=123	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__4310363__1__NC_007779__4353540__1__0____101__101__1__0	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=49	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.05	new_junction_frequency=1.000000e+00	new_junction_read_count=288	pos_hash_score=140	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=286
JC	916	.	NC_007779	4311557	-1	NC_007779	4353543	-1	0	alignment_overlap=0	coverage_minus=127	coverage_plus=149	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__4311557__-1__NC_007779__4353543__-1__0____101__101__1__0	max_left=93	max_left_minus=93	max_left_plus=93	max_min_left=50	max_min_left_minus=48	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=94	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.05	new_junction_frequency=1.000000e+00	new_junction_read_count=286	pos_hash_score=127	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=276
JC	917	.	NC_007779	4355060	1	NC_007779	4502861	1	0	alignment_overlap=0	coverage_minus=126	coverage_plus=190	flanking_left=101	flanking_right=101	frequency=9.937304e-01	junction_possible_overlap_registers=90	key=NC_007779__4355060__1__NC_007779__4502861__1__0____101__101__0__1	max_left=95	max_left_minus=93	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.16	new_junction_frequency=9.937304e-01	new_junction_read_count=317	pos_hash_score=143	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=316
JC	918	.	NC_007779	4355066	-1	NC_007779	4504189	-1	0	alignment_overlap=2	coverage_minus=148	coverage_plus=136	flanking_left=101	flanking_right=101	frequency=9.897770e-01	junction_possible_overlap_registers=88	key=NC_007779__4355066__-1__NC_007779__4504191__-1__2____101__101__0__1	max_left=93	max_left_minus=93	max_left_plus=92	max_min_left=49	max_min_left_minus=48	max_min_left_plus=49	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=176	max_right=93	max_right_minus=93	max_right_plus=93	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.06	new_junction_frequency=9.897770e-01	new_junction_read_count=284	pos_hash_score=144	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=2	side_1_possible_overlap_registers=90	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=284
JC	919	.	NC_007779	4547362	1	NC_007779	4547676	1	0	alignment_overlap=9	coverage_minus=22	coverage_plus=17	flanking_left=101	flanking_right=101	frequency=1.703801e-01	junction_possible_overlap_registers=81	key=NC_007779__4547362__1__NC_007779__4547667__1__9____101__101__0__0	max_left=85	max_left_minus=85	max_left_plus=84	max_min_left=45	max_min_left_minus=44	max_min_left_plus=45	max_min_right=46	max_min_right_minus=43	max_min_right_plus=46	max_pos_hash_score=162	max_right=86	max_right_minus=83	max_right_plus=86	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.16	new_junction_frequency=1.703801e-01	new_junction_read_count=39	pos_hash_score=36	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=9	side_1_possible_overlap_registers=90	side_1_read_count=182	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=81	side_2_read_count=216	side_2_redundant=0	total_non_overlap_reads=39
JC	920	.	NC_007779	4547370	-1	NC_007779	4547666	-1	0	alignment_overlap=9	coverage_minus=26	coverage_plus=18	flanking_left=101	flanking_right=101	frequency=1.859679e-01	junction_possible_overlap_registers=81	key=NC_007779__4547370__-1__NC_007779__4547675__-1__9____101__101__0__0	max_left=81	max_left_minus=81	max_left_plus=80	max_min_left=45	max_min_left_minus=45	max_min_left_plus=43	max_min_right=45	max_min_right_minus=45	max_min_right_plus=37	max_pos_hash_score=162	max_right=85	max_right_minus=85	max_right_plus=82	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.18	new_junction_frequency=1.859679e-01	new_junction_read_count=44	pos_hash_score=38	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=9	side_1_possible_overlap_registers=90	side_1_read_count=188	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=81	side_2_read_count=216	side_2_redundant=0	total_non_overlap_reads=44
UN	921	.	NC_007779	15485	16633
UN	922	.	NC_007779	19895	20465
UN	923	.	NC_007779	223635	223642
UN	924	.	NC_007779	223838	224675
UN	925	.	NC_007779	224989	225488
UN	926	.	NC_007779	225835	225923
UN	927	.	NC_007779	226121	226202
UN	928	.	NC_007779	226399	226505
UN	929	.	NC_007779	226701	226870
UN	930	.	NC_007779	227085	228591
UN	931	.	NC_007779	228787	228911
UN	932	.	NC_007779	269859	270421
UN	933	.	NC_007779	270706	270712
UN	934	.	NC_007779	273277	274275
UN	935	.	NC_007779	274733	365379
UN	936	.	NC_007779	365381	365381
UN	937	.	NC_007779	365385	365386
UN	938	.	NC_007779	365390	365510
UN	939	.	NC_007779	365607	365636
UN	940	.	NC_007779	365670	371972
UN	941	.	NC_007779	380576	381723
UN	942	.	NC_007779	391029	392101
UN	943	.	NC_007779	525194	525848
UN	944	.	NC_007779	566089	567161
UN	945	.	NC_007779	573903	574918
UN	946	.	NC_007779	580439	580490
UN	947	.	NC_007779	607328	608477
UN	948	.	NC_007779	654214	655412
UN	949	.	NC_007779	688366	689377
UN	950	.	NC_007779	730322	730467
UN	951	.	NC_007779	730827	730860
UN	952	.	NC_007779	732504	732614
UN	953	.	NC_007779	733123	733151
UN	954	.	NC_007779	734995	735024
UN	955	.	NC_007779	1050344	1050399
UN	956	.	NC_007779	1050559	1050736
UN	957	.	NC_007779	1094763	1095829
UN	958	.	NC_007779	1105717	1106860
UN	959	.	NC_007779	1270766	1270799
UN	960	.	NC_007779	1271823	1271871
UN	961	.	NC_007779	1288372	1288460
UN	962	.	NC_007779	1301041	1302376
UN	963	.	NC_007779	1397851	1398859
UN	964	.	NC_007779	1413639	1436698
UN	965	.	NC_007779	1469721	1470864
UN	966	.	NC_007779	1471108	1472133
UN	967	.	NC_007779	1530138	1530792
UN	968	.	NC_007779	1533980	1534024
UN	969	.	NC_007779	1572480	1572486
UN	970	.	NC_007779	1572677	1572963
UN	971	.	NC_007779	1573216	1573420
UN	972	.	NC_007779	1634762	1634838
UN	973	.	NC_007779	1635034	1635246
UN	974	.	NC_007779	1635439	1635541
UN	975	.	NC_007779	1635909	1636254
UN	976	.	NC_007779	1636451	1636638
UN	977	.	NC_007779	1637648	1637699
UN	978	.	NC_007779	1652655	1653167
UN	979	.	NC_007779	1980303	1981310
UN	980	.	NC_007779	2068409	2068504
UN	981	.	NC_007779	2068700	2068747
UN	982	.	NC_007779	2068961	2069339
UN	983	.	NC_007779	2071174	2072316
UN	984	.	NC_007779	2103980	2104988
UN	985	.	NC_007779	2172403	2173467
UN	986	.	NC_007779	2176983	2178208
UN	987	.	NC_007779	2292347	2293349
UN	988	.	NC_007779	2308005	2308023
UN	989	.	NC_007779	2308231	2308249
UN	990	.	NC_007779	2320795	2322130
UN	991	.	NC_007779	2411554	2412127
UN	992	.	NC_007779	2519814	2520966
UN	993	.	NC_007779	2724817	2727806
UN	994	.	NC_007779	2728091	2728121
UN	995	.	NC_007779	2728320	2729507
UN	996	.	NC_007779	2729833	2729930
UN	997	.	NC_007779	2995112	2995112
UN	998	.	NC_007779	2995114	2996257
UN	999	.	NC_007779	3128894	3147473
UN	1000	.	NC_007779	3184842	3185985
UN	1001	.	NC_007779	3261134	3262337
UN	1002	.	NC_007779	3365505	3366513
UN	1003	.	NC_007779	3423612	3424411
UN	1004	.	NC_007779	3424606	3426562
UN	1005	.	NC_007779	3426758	3426847
UN	1006	.	NC_007779	3427045	3428592
UN	1007	.	NC_007779	3459669	3460046
UN	1008	.	NC_007779	3460237	3460348
UN	1009	.	NC_007779	3465131	3468011
UN	1010	.	NC_007779	3468300	3468330
UN	1011	.	NC_007779	3468559	3470289
UN	1012	.	NC_007779	3596172	3597191
UN	1013	.	NC_007779	3597394	3597855
UN	1014	.	NC_007779	3598088	3598748
UN	1015	.	NC_007779	3598944	3599186
UN	1016	.	NC_007779	3599296	3599491
UN	1017	.	NC_007779	3599687	3600854
UN	1018	.	NC_007779	3601046	3601421
UN	1019	.	NC_007779	3689826	3689895
UN	1020	.	NC_007779	3690160	3690355
UN	1021	.	NC_007779	3690552	3690668
UN	1022	.	NC_007779	3690874	3691014
UN	1023	.	NC_007779	3691208	3692523
UN	1024	.	NC_007779	3692789	3693186
UN	1025	.	NC_007779	3693384	3694550
UN	1026	.	NC_007779	3694746	3694928
UN	1027	.	NC_007779	3694930	3694930
UN	1028	.	NC_007779	3742936	3744271
UN	1029	.	NC_007779	3746911	3748109
UN	1030	.	NC_007779	3750591	3751789
UN	1031	.	NC_007779	3874863	3874904
UN	1032	.	NC_007779	3875224	3876240
UN	1033	.	NC_007779	3876439	3878053
UN	1034	.	NC_007779	3958123	3958156
UN	1035	.	NC_007779	3973174	3973377
UN	1036	.	NC_007779	3973631	3973913
UN	1037	.	NC_007779	3974108	3974116
UN	1038	.	NC_007779	3987277	3988288
UN	1039	.	NC_007779	4015543	4015587
UN	1040	.	NC_007779	4017853	4017897
UN	1041	.	NC_007779	4018214	4019232
UN	1042	.	NC_007779	4019430	4021046
UN	1043	.	NC_007779	4056320	4056890
UN	1044	.	NC_007779	4169476	4169587
UN	1045	.	NC_007779	4169778	4170155
UN	1046	.	NC_007779	4211520	4211762
UN	1047	.	NC_007779	4211960	4213508
UN	1048	.	NC_007779	4213669	4215790
UN	1049	.	NC_007779	4215986	4216660
UN	1050	.	NC_007779	4299523	4299551
UN	1051	.	NC_007779	4299747	4299777
UN	1052	.	NC_007779	4310363	4311561
UN	1053	.	NC_007779	4502953	4504094
UN	1054	.	NC_007779	4512230	4513265