#=GENOME_DIFF	1.0
#=AUTHOR	breseq 0.25c 
#=CREATED	23:04:06 06 Mar 2015
#=REFSEQ	/data/savita/refseq/NC_007779.gbk
#=READSEQ	4_D22_AGTTCC_L001_R2_001.fastq
SNP	1	980	NC_007779	13269	G	frequency=7.990360e-02
SNP	2	981	NC_007779	13271	T	frequency=7.953739e-02
SNP	3	982	NC_007779	13275	C	frequency=9.316063e-02
SNP	4	983	NC_007779	13279	G	frequency=9.544611e-02
SNP	5	984	NC_007779	13281	T	frequency=9.843683e-02
SNP	6	985	NC_007779	13291	C	frequency=1.165061e-01
SNP	7	986	NC_007779	13293	G	frequency=1.076498e-01
SNP	8	987	NC_007779	13298	C	frequency=1.121912e-01
SNP	9	988	NC_007779	13299	C	frequency=1.121693e-01
SNP	10	989	NC_007779	13302	C	frequency=1.107464e-01
SNP	11	990	NC_007779	13309	C	frequency=1.052222e-01
SNP	12	991	NC_007779	13310	G	frequency=1.066093e-01
SNP	13	992	NC_007779	13311	C	frequency=1.057940e-01
SNP	14	993	NC_007779	13317	G	frequency=1.087456e-01
SNP	15	994	NC_007779	13320	C	frequency=1.114244e-01
SNP	16	995	NC_007779	13323	G	frequency=1.112909e-01
SNP	17	996	NC_007779	13329	G	frequency=1.229753e-01
SNP	18	997	NC_007779	13338	C	frequency=1.375003e-01
SNP	19	998	NC_007779	13356	G	frequency=1.091781e-01
SNP	20	999	NC_007779	13365	T	frequency=8.619595e-02
SNP	21	1000	NC_007779	13368	G	frequency=8.099556e-02
SNP	22	1001	NC_007779	13373	A	frequency=7.512093e-02
SNP	23	1002	NC_007779	13383	C	frequency=5.853128e-02
SNP	24	1003	NC_007779	13389	C	frequency=5.953789e-02
SNP	25	1004	NC_007779	13391	A	frequency=5.950260e-02
SNP	26	1005	NC_007779	13400	A	frequency=6.077719e-02
SNP	27	1006	NC_007779	13402	C	frequency=6.111622e-02
SNP	28	1007	NC_007779	13403	G	frequency=6.103992e-02
SNP	29	1008	NC_007779	13404	C	frequency=6.114578e-02
SNP	30	1014	NC_007779	30930	C	frequency=2.627373e-02
SNP	31	1015	NC_007779	30939	C	frequency=2.566910e-02
SNP	32	1016	NC_007779	30940	C	frequency=2.629089e-02
SNP	33	1017	NC_007779	30941	T	frequency=2.465439e-02
SNP	34	1018	NC_007779	30942	G	frequency=2.612877e-02
SNP	35	1019	NC_007779	30945	A	frequency=2.683449e-02
SNP	36	1020	NC_007779	30950	C	frequency=2.620411e-02
SNP	37	1021	NC_007779	30951	G	frequency=3.055382e-02
SNP	38	1022	NC_007779	30957	T	frequency=2.721024e-02
SNP	39	1023	NC_007779	30963	T	frequency=2.881145e-02
SNP	40	1025	NC_007779	30975	G	frequency=2.767754e-02
SNP	41	1026	NC_007779	30978	T	frequency=2.549362e-02
SNP	42	1027	NC_007779	30984	T	frequency=2.798843e-02
SNP	43	1028	NC_007779	30993	G	frequency=2.610970e-02
SNP	44	1029	NC_007779	30994	T	frequency=2.371693e-02
SNP	45	1030	NC_007779	30996	C	frequency=2.601051e-02
SNP	46	1031	NC_007779	30999	A	frequency=2.667427e-02
SNP	47	1032	NC_007779	31002	C	frequency=2.605820e-02
SNP	48	1033	NC_007779	31003	T	frequency=2.642345e-02
SNP	49	1034	NC_007779	31005	C	frequency=2.725983e-02
SNP	50	1045	NC_007779	66457	A	frequency=1
SNP	51	1049	NC_007779	80397	C	frequency=5.254126e-02
SNP	52	1051	NC_007779	80403	A	frequency=5.059671e-02
SNP	53	1052	NC_007779	80409	A	frequency=8.798695e-02
SNP	54	1053	NC_007779	80415	C	frequency=1.065116e-01
SNP	55	1054	NC_007779	80430	A	frequency=1.047106e-01
SNP	56	1055	NC_007779	80447	T	frequency=1.086259e-01
SNP	57	1056	NC_007779	80448	C	frequency=1.128631e-01
SNP	58	1057	NC_007779	80454	G	frequency=1.105690e-01
SNP	59	1058	NC_007779	80457	A	frequency=1.124535e-01
SNP	60	1059	NC_007779	80460	A	frequency=1.138310e-01
SNP	61	1060	NC_007779	80466	C	frequency=1.176124e-01
SNP	62	1061	NC_007779	80469	T	frequency=1.177254e-01
SNP	63	1062	NC_007779	80472	A	frequency=1.097193e-01
SNP	64	1065	NC_007779	80484	A	frequency=9.012270e-02
SNP	65	1066	NC_007779	80487	A	frequency=8.971405e-02
SNP	66	1067	NC_007779	80495	C	frequency=6.027937e-02
SNP	67	1073	NC_007779	97880	T	frequency=1
SNP	68	1080	NC_007779	109400	C	frequency=3.476048e-02
SNP	69	1101	NC_007779	167632	A	frequency=1
SNP	70	1104	NC_007779	190413	C	frequency=6.471109e-02
SNP	71	1106	NC_007779	190423	G	frequency=7.053900e-02
SNP	72	1107	NC_007779	190428	C	frequency=7.129812e-02
SNP	73	1108	NC_007779	190432	C	frequency=6.638050e-02
SNP	74	1109	NC_007779	190434	G	frequency=6.854773e-02
SNP	75	1110	NC_007779	190437	C	frequency=6.599331e-02
SNP	76	1111	NC_007779	190445	G	frequency=6.879282e-02
SNP	77	1112	NC_007779	190446	C	frequency=7.200336e-02
SNP	78	1113	NC_007779	190449	C	frequency=6.624985e-02
SNP	79	1114	NC_007779	190455	T	frequency=6.648588e-02
SNP	80	1115	NC_007779	190457	A	frequency=6.835079e-02
SNP	81	1116	NC_007779	190458	C	frequency=6.754541e-02
SNP	82	1117	NC_007779	190464	T	frequency=6.888628e-02
SNP	83	1118	NC_007779	190468	C	frequency=6.280994e-02
SNP	84	1119	NC_007779	190469	C	frequency=6.463718e-02
SNP	85	1120	NC_007779	190470	G	frequency=6.481695e-02
SNP	86	1121	NC_007779	190479	C	frequency=6.500673e-02
SNP	87	1122	NC_007779	190497	C	frequency=5.852509e-02
SNP	88	1132	NC_007779	224686	G	frequency=5.246940e-01
SNP	89	1133	NC_007779	224713	C	frequency=2.601576e-01
SNP	90	1134	NC_007779	224725	A	frequency=2.141814e-01
SNP	91	1135	NC_007779	224759	G	frequency=1.534963e-01
SNP	92	1136	NC_007779	224768	A	frequency=1.411529e-01
SNP	93	1137	NC_007779	224769	T	frequency=1.429949e-01
SNP	94	1158	NC_007779	224892	A	frequency=2.436643e-01
INS	95	1161	NC_007779	224902	A	frequency=2.449007e-01	insert_position=1
SNP	96	1162	NC_007779	224903	C	frequency=2.503581e-01
SNP	97	1164	NC_007779	224906	T	frequency=2.720003e-01
SNP	98	1165	NC_007779	224907	G	frequency=2.686825e-01
SNP	99	1166	NC_007779	224908	T	frequency=2.678380e-01
SNP	100	1167	NC_007779	224910	G	frequency=2.702088e-01
SNP	101	1168	NC_007779	224911	T	frequency=2.682457e-01
SNP	102	1169	NC_007779	224915	G	frequency=2.719007e-01
SNP	103	1170	NC_007779	224920	G	frequency=2.922730e-01
SNP	104	1171	NC_007779	224921	T	frequency=2.894812e-01
SNP	105	1172	NC_007779	224923	A	frequency=3.014064e-01
SNP	106	1176	NC_007779	224937	T	frequency=2.860203e-01
SNP	107	1182	NC_007779	224968	A	frequency=3.500681e-01
SNP	108	1234	NC_007779	274547	G	frequency=1
DEL	109	3248,3263	NC_007779	274733	97240	frequency=1
SNP	110	1302	NC_007779	547694	G	frequency=1
INS	111	1303	NC_007779	547831	G	frequency=1	insert_position=1
SNP	112	1305	NC_007779	556858	T	frequency=1
SNP	113	1306	NC_007779	569996	C	frequency=1
DEL	114	3249,3268	NC_007779	654214	1199	frequency=1
SNP	115	1337	NC_007779	725818	G	frequency=8.048058e-02
SNP	116	1338	NC_007779	725822	G	frequency=1.053805e-01
SNP	117	1339	NC_007779	725827	T	frequency=1.270971e-01
SNP	118	1340	NC_007779	725830	C	frequency=1.277227e-01
SNP	119	1353	NC_007779	725890	T	frequency=1.634350e-01
SNP	120	1354	NC_007779	725908	A	frequency=1.538882e-01
SNP	121	1355	NC_007779	725917	G	frequency=1.210384e-01
SNP	122	1356	NC_007779	725920	G	frequency=9.691048e-02
SNP	123	1357	NC_007779	725925	G	frequency=6.094456e-02
SNP	124	1358	NC_007779	725926	G	frequency=6.090403e-02
SNP	125	1359	NC_007779	725929	T	frequency=5.868244e-02
SNP	126	1360	NC_007779	725932	C	frequency=5.848789e-02
SNP	127	1361	NC_007779	725934	T	frequency=5.919075e-02
SNP	128	1362	NC_007779	725937	A	frequency=5.989170e-02
SNP	129	1363	NC_007779	725941	C	frequency=5.936146e-02
SNP	130	1364	NC_007779	725943	C	frequency=5.881929e-02
SNP	131	1365	NC_007779	725946	T	frequency=5.744648e-02
SNP	132	1366	NC_007779	725947	G	frequency=6.121302e-02
SNP	133	1367	NC_007779	725956	C	frequency=6.151724e-02
SNP	134	1368	NC_007779	725957	T	frequency=5.800104e-02
SNP	135	1369	NC_007779	725959	T	frequency=5.789042e-02
SNP	136	1370	NC_007779	725965	C	frequency=4.050732e-02
SNP	137	1371	NC_007779	725966	T	frequency=4.063034e-02
SNP	138	1372	NC_007779	725967	G	frequency=4.077721e-02
SNP	139	1374	NC_007779	725977	G	frequency=1.774693e-02
SNP	140	1376	NC_007779	726501	C	frequency=4.898071e-02
SNP	141	1377	NC_007779	726502	A	frequency=4.882383e-02
SNP	142	1378	NC_007779	726519	A	frequency=5.056477e-02
SNP	143	1380	NC_007779	726535	C	frequency=5.418110e-02
SNP	144	1381	NC_007779	726538	G	frequency=5.145025e-02
SNP	145	1382	NC_007779	726541	T	frequency=5.095291e-02
SNP	146	1383	NC_007779	726544	C	frequency=5.125952e-02
SNP	147	1384	NC_007779	726550	C	frequency=6.249905e-02
SNP	148	1385	NC_007779	726551	G	frequency=6.314611e-02
SNP	149	1386	NC_007779	726552	T	frequency=6.300735e-02
SNP	150	1387	NC_007779	726554	G	frequency=6.316948e-02
SNP	151	1388	NC_007779	726556	G	frequency=6.311607e-02
SNP	152	1389	NC_007779	726565	A	frequency=5.658865e-02
SNP	153	1390	NC_007779	726568	G	frequency=5.553293e-02
SNP	154	1391	NC_007779	726571	C	frequency=5.448914e-02
SNP	155	1392	NC_007779	726577	C	frequency=5.418396e-02
SNP	156	1393	NC_007779	726583	G	frequency=5.429506e-02
SNP	157	1408	NC_007779	749354	A	frequency=1
SNP	158	1411	NC_007779	758440	A	frequency=1
SNP	159	1414	NC_007779	815429	C	frequency=2.735519e-02
SNP	160	1415	NC_007779	815437	A	frequency=5.145931e-02
SNP	161	1416	NC_007779	815450	C	frequency=9.428167e-02
SNP	162	1417	NC_007779	815453	T	frequency=9.774637e-02
SNP	163	1418	NC_007779	815456	T	frequency=9.269905e-02
SNP	164	1419	NC_007779	815460	C	frequency=9.462833e-02
SNP	165	1420	NC_007779	815462	G	frequency=9.483480e-02
SNP	166	1421	NC_007779	815471	G	frequency=1.313925e-01
SNP	167	1422	NC_007779	815474	C	frequency=1.336980e-01
SNP	168	1423	NC_007779	815477	C	frequency=1.293435e-01
SNP	169	1424	NC_007779	815480	C	frequency=1.303940e-01
SNP	170	1426	NC_007779	815486	C	frequency=1.819835e-01
SNP	171	1427	NC_007779	815489	G	frequency=1.851125e-01
SNP	172	1429	NC_007779	815504	A	frequency=2.277808e-01
SNP	173	1430	NC_007779	815522	G	frequency=2.068682e-01
SNP	174	1431	NC_007779	815525	G	frequency=2.061071e-01
SNP	175	1432	NC_007779	815528	G	frequency=2.055683e-01
SNP	176	1433	NC_007779	815532	T	frequency=1.935482e-01
SNP	177	1434	NC_007779	815540	G	frequency=1.861048e-01
SNP	178	1435	NC_007779	815543	G	frequency=1.632662e-01
SNP	179	1436	NC_007779	815555	T	frequency=1.448941e-01
SNP	180	1437	NC_007779	815561	G	frequency=1.273208e-01
SNP	181	1438	NC_007779	815573	C	frequency=1.137853e-01
SNP	182	1439	NC_007779	815576	G	frequency=9.125614e-02
SNP	183	1440	NC_007779	815579	A	frequency=7.750511e-02
SNP	184	1443	NC_007779	846307	C	frequency=3.116035e-02
SNP	185	1444	NC_007779	846315	C	frequency=4.499817e-02
SNP	186	1445	NC_007779	846316	G	frequency=4.513454e-02
SNP	187	1446	NC_007779	846322	G	frequency=5.599403e-02
SNP	188	1447	NC_007779	846328	A	frequency=5.014896e-02
SNP	189	1448	NC_007779	846331	C	frequency=5.413914e-02
SNP	190	1450	NC_007779	846334	A	frequency=5.803204e-02
SNP	191	1451	NC_007779	846337	G	frequency=5.612803e-02
SNP	192	1452	NC_007779	846344	C	frequency=5.516577e-02
SNP	193	1453	NC_007779	846346	A	frequency=5.628014e-02
SNP	194	1454	NC_007779	846352	G	frequency=5.637741e-02
SNP	195	1455	NC_007779	846355	G	frequency=5.718660e-02
SNP	196	1456	NC_007779	846358	G	frequency=5.690622e-02
SNP	197	1457	NC_007779	846361	A	frequency=5.892611e-02
SNP	198	1458	NC_007779	846364	C	frequency=5.996132e-02
SNP	199	1460	NC_007779	846368	C	frequency=5.959988e-02
SNP	200	1461	NC_007779	846369	C	frequency=5.182171e-02
SNP	201	1462	NC_007779	846371	A	frequency=5.252266e-02
SNP	202	1464	NC_007779	846373	G	frequency=5.320454e-02
SNP	203	1465	NC_007779	846376	C	frequency=5.776215e-02
SNP	204	1466	NC_007779	846400	C	frequency=1.165709e-01
SNP	205	1467	NC_007779	846406	G	frequency=9.064436e-02
SNP	206	1468	NC_007779	846409	G	frequency=8.213520e-02
SNP	207	1469	NC_007779	846415	T	frequency=7.850742e-02
SNP	208	1470	NC_007779	846417	G	frequency=8.128405e-02
SNP	209	1471	NC_007779	846418	C	frequency=7.601309e-02
SNP	210	1472	NC_007779	846424	T	frequency=7.342529e-02
SNP	211	1473	NC_007779	846426	C	frequency=7.650518e-02
SNP	212	1474	NC_007779	846429	T	frequency=7.371044e-02
SNP	213	1475	NC_007779	846430	G	frequency=7.748318e-02
SNP	214	1476	NC_007779	846436	T	frequency=8.021021e-02
SNP	215	1477	NC_007779	846439	A	frequency=7.971430e-02
SNP	216	1478	NC_007779	846442	A	frequency=7.705259e-02
SNP	217	1479	NC_007779	846448	G	frequency=7.704306e-02
SNP	218	1480	NC_007779	846451	A	frequency=7.810163e-02
SNP	219	1481	NC_007779	846454	T	frequency=7.553959e-02
SNP	220	1482	NC_007779	846463	C	frequency=7.108927e-02
SNP	221	1483	NC_007779	846466	G	frequency=3.703690e-02
SNP	222	1484	NC_007779	846469	G	frequency=3.853321e-02
SNP	223	1485	NC_007779	846472	C	frequency=3.843880e-02
SNP	224	1490	NC_007779	887234	A	frequency=1
SNP	225	1500	NC_007779	987574	T	frequency=1
SNP	226	1512	NC_007779	1093686	C	frequency=1
SNP	227	1514	NC_007779	1097580	T	frequency=2.243586e-01
SNP	228	1524	NC_007779	1170573	T	frequency=1
SNP	229	1527	NC_007779	1197797	T	frequency=4.283619e-02
SNP	230	1528	NC_007779	1197809	T	frequency=3.383446e-02
SNP	231	1529	NC_007779	1197822	C	frequency=3.343010e-02
SNP	232	1530	NC_007779	1197824	G	frequency=3.343105e-02
SNP	233	1531	NC_007779	1213001	C	frequency=2.826118e-02
SNP	234	1532	NC_007779	1213013	C	frequency=2.773571e-02
SNP	235	1533	NC_007779	1213026	T	frequency=2.822876e-02
SNP	236	1534	NC_007779	1213028	A	frequency=2.796268e-02
SNP	237	1543	NC_007779	1282104	G	frequency=2.875233e-02
SNP	238	1544	NC_007779	1282105	C	frequency=2.890301e-02
SNP	239	1545	NC_007779	1282110	C	frequency=2.949238e-02
SNP	240	1546	NC_007779	1282115	A	frequency=3.124619e-02
SNP	241	1547	NC_007779	1282118	G	frequency=2.904797e-02
SNP	242	1548	NC_007779	1282121	A	frequency=2.819538e-02
SNP	243	1549	NC_007779	1282124	A	frequency=2.874279e-02
SNP	244	1550	NC_007779	1282127	A	frequency=3.313446e-02
SNP	245	1551	NC_007779	1282130	G	frequency=2.773190e-02
SNP	246	1552	NC_007779	1282135	T	frequency=2.990818e-02
SNP	247	1553	NC_007779	1282136	C	frequency=2.995968e-02
SNP	248	1554	NC_007779	1282142	C	frequency=2.966881e-02
SNP	249	1555	NC_007779	1282145	G	frequency=3.021240e-02
SNP	250	1556	NC_007779	1282148	C	frequency=3.015232e-02
SNP	251	1557	NC_007779	1282154	T	frequency=2.790928e-02
SNP	252	1558	NC_007779	1282157	A	frequency=2.969456e-02
SNP	253	1559	NC_007779	1282160	G	frequency=3.022957e-02
SNP	254	1560	NC_007779	1282163	C	frequency=3.153038e-02
SNP	255	1561	NC_007779	1282165	G	frequency=3.161240e-02
SNP	256	1562	NC_007779	1282174	T	frequency=2.878475e-02
SNP	257	1563	NC_007779	1282178	T	frequency=2.941608e-02
SNP	258	1564	NC_007779	1288364	A	frequency=1
SNP	259	1565	NC_007779	1288370	G	frequency=1
SNP	260	1567	NC_007779	1288462	C	frequency=1
DEL	261	3250,3273	NC_007779	1301041	1336	frequency=1
SNP	262	1572	NC_007779	1318876	A	frequency=1
SNP	263	1576	NC_007779	1333301	A	frequency=2.954292e-02
SNP	264	1577	NC_007779	1333305	G	frequency=3.062725e-02
SNP	265	1578	NC_007779	1333310	G	frequency=2.558422e-02
SNP	266	1579	NC_007779	1333316	G	frequency=2.735901e-02
SNP	267	1580	NC_007779	1333320	G	frequency=2.685070e-02
SNP	268	1581	NC_007779	1333323	A	frequency=2.714634e-02
SNP	269	1582	NC_007779	1333324	T	frequency=2.694130e-02
SNP	270	1583	NC_007779	1333325	G	frequency=2.799225e-02
SNP	271	1584	NC_007779	1333327	C	frequency=2.570248e-02
SNP	272	1586	NC_007779	1333329	C	frequency=2.375603e-02
SNP	273	1587	NC_007779	1333337	G	frequency=2.422237e-02
SNP	274	1588	NC_007779	1333340	A	frequency=2.390003e-02
SNP	275	1589	NC_007779	1333343	C	frequency=2.344227e-02
DEL	276	3251,3276	NC_007779	1413639	23060	frequency=1
SNP	277	1633	NC_007779	1483588	A	frequency=1
SNP	278	1635	NC_007779	1485314	C	frequency=1.038041e-01
SNP	279	1637	NC_007779	1485320	T	frequency=1.032224e-01
SNP	280	1638	NC_007779	1485321	G	frequency=1.034045e-01
SNP	281	1639	NC_007779	1485322	G	frequency=1.016870e-01
SNP	282	1640	NC_007779	1485323	C	frequency=1.029530e-01
SNP	283	1641	NC_007779	1485325	G	frequency=1.029329e-01
SNP	284	1642	NC_007779	1485326	C	frequency=1.029062e-01
SNP	285	1643	NC_007779	1485332	A	frequency=1.032710e-01
SNP	286	1644	NC_007779	1485336	T	frequency=1.094241e-01
SNP	287	1646	NC_007779	1485339	C	frequency=8.937502e-02
SNP	288	1647	NC_007779	1485340	G	frequency=8.416796e-02
SNP	289	1648	NC_007779	1485341	T	frequency=8.508158e-02
SNP	290	1649	NC_007779	1485342	G	frequency=8.673716e-02
SNP	291	1650	NC_007779	1485353	C	frequency=1.244578e-01
SNP	292	1651	NC_007779	1485359	C	frequency=1.304083e-01
SNP	293	1652	NC_007779	1485362	C	frequency=1.300597e-01
SNP	294	1653	NC_007779	1485365	T	frequency=1.274180e-01
SNP	295	1654	NC_007779	1485368	G	frequency=1.307869e-01
SNP	296	1655	NC_007779	1485386	C	frequency=1.191869e-01
SNP	297	1656	NC_007779	1485389	C	frequency=9.749556e-02
SNP	298	1657	NC_007779	1485395	C	frequency=7.943153e-02
SNP	299	1658	NC_007779	1485398	C	frequency=7.905436e-02
SNP	300	1659	NC_007779	1485399	C	frequency=7.810879e-02
SNP	301	1660	NC_007779	1485404	G	frequency=7.722044e-02
SNP	302	1661	NC_007779	1485407	A	frequency=8.324671e-02
SNP	303	1662	NC_007779	1485413	A	frequency=7.722855e-02
SNP	304	1663	NC_007779	1485416	G	frequency=8.025789e-02
SNP	305	1664	NC_007779	1485417	C	frequency=7.820988e-02
SNP	306	1666	NC_007779	1485419	T	frequency=8.684444e-02
SNP	307	1667	NC_007779	1485420	A	frequency=8.617306e-02
SNP	308	1668	NC_007779	1485422	T	frequency=9.108305e-02
SNP	309	1669	NC_007779	1485430	A	frequency=8.177042e-02
SNP	310	1670	NC_007779	1485434	C	frequency=7.697058e-02
SNP	311	1671	NC_007779	1485437	A	frequency=7.321835e-02
SNP	312	1672	NC_007779	1485440	T	frequency=6.593418e-02
SNP	313	1673	NC_007779	1485443	G	frequency=6.626606e-02
SNP	314	1674	NC_007779	1485446	G	frequency=6.626749e-02
SNP	315	1675	NC_007779	1485461	G	frequency=4.734373e-02
SNP	316	1676	NC_007779	1485467	G	frequency=1.810551e-02
SNP	317	1695	NC_007779	1486010	C	frequency=2.798176e-02
SNP	318	1696	NC_007779	1486011	A	frequency=2.799320e-02
SNP	319	1697	NC_007779	1486012	G	frequency=2.802086e-02
SNP	320	1698	NC_007779	1486016	G	frequency=2.760124e-02
SNP	321	1699	NC_007779	1486019	G	frequency=2.787971e-02
SNP	322	1700	NC_007779	1486022	A	frequency=2.747726e-02
SNP	323	1701	NC_007779	1486025	T	frequency=2.697372e-02
SNP	324	1702	NC_007779	1486031	T	frequency=2.729988e-02
SNP	325	1703	NC_007779	1486037	C	frequency=3.206921e-02
SNP	326	1704	NC_007779	1486046	G	frequency=5.502033e-02
SNP	327	1705	NC_007779	1486064	C	frequency=5.544472e-02
SNP	328	1706	NC_007779	1486070	T	frequency=5.058050e-02
SNP	329	1707	NC_007779	1486073	C	frequency=5.124569e-02
SNP	330	1708	NC_007779	1486076	T	frequency=4.867649e-02
SNP	331	1709	NC_007779	1486083	G	frequency=4.692936e-02
SNP	332	1710	NC_007779	1486085	A	frequency=4.836321e-02
SNP	333	1711	NC_007779	1486086	C	frequency=4.907131e-02
DEL	334	1729	NC_007779	1496775	1	frequency=1
SNP	335	1757	NC_007779	1539932	G	frequency=7.585335e-02
SNP	336	1758	NC_007779	1539935	G	frequency=7.481575e-02
SNP	337	1759	NC_007779	1539937	C	frequency=7.599401e-02
SNP	338	1760	NC_007779	1539957	G	frequency=9.086275e-02
SNP	339	1761	NC_007779	1539958	T	frequency=9.250832e-02
SNP	340	1762	NC_007779	1539968	C	frequency=6.867170e-02
SNP	341	1763	NC_007779	1539971	C	frequency=6.437540e-02
SNP	342	1765	NC_007779	1539978	G	frequency=4.182339e-02
SNP	343	1766	NC_007779	1539979	A	frequency=3.919315e-02
SNP	344	1767	NC_007779	1539988	A	frequency=3.825569e-02
SNP	345	1768	NC_007779	1539989	A	frequency=3.786850e-02
SNP	346	1769	NC_007779	1539991	A	frequency=3.196812e-02
SNP	347	1770	NC_007779	1539995	A	frequency=3.684902e-02
SNP	348	1771	NC_007779	1539999	G	frequency=3.747272e-02
SNP	349	1772	NC_007779	1540001	C	frequency=3.705120e-02
SNP	350	1773	NC_007779	1540004	G	frequency=3.684044e-02
SNP	351	1774	NC_007779	1540007	C	frequency=3.678989e-02
SNP	352	1775	NC_007779	1540009	A	frequency=3.655434e-02
SNP	353	1776	NC_007779	1540016	C	frequency=3.858566e-02
SNP	354	1777	NC_007779	1540019	A	frequency=3.701973e-02
SNP	355	1778	NC_007779	1540022	G	frequency=2.191067e-02
SNP	356	1779	NC_007779	1540024	T	frequency=2.223778e-02
SNP	357	1780	NC_007779	1540028	A	frequency=2.283859e-02
SNP	358	1814	NC_007779	1615814	A	frequency=1
DEL	359	1820	NC_007779	1669599	1	frequency=1
SNP	360	1863	NC_007779	1844073	A	frequency=1
SNP	361	1866	NC_007779	1864922	G	frequency=2.872181e-02
SNP	362	1867	NC_007779	1864931	T	frequency=6.807232e-02
SNP	363	1868	NC_007779	1864956	A	frequency=6.975126e-02
SNP	364	1869	NC_007779	1864964	G	frequency=7.098961e-02
SNP	365	1870	NC_007779	1864968	C	frequency=7.238102e-02
SNP	366	1871	NC_007779	1864970	G	frequency=6.919861e-02
SNP	367	1872	NC_007779	1864971	G	frequency=6.994772e-02
SNP	368	1873	NC_007779	1864976	C	frequency=6.859493e-02
SNP	369	1874	NC_007779	1864979	G	frequency=6.999254e-02
INS	370	1875	NC_007779	1864988	G	frequency=7.563066e-02	insert_position=1
SNP	371	1876	NC_007779	1864990	G	frequency=7.564020e-02
DEL	372	1877	NC_007779	1864993	1	frequency=7.256985e-02
SNP	373	1878	NC_007779	1864994	C	frequency=7.255268e-02
SNP	374	1879	NC_007779	1865000	C	frequency=8.293724e-02
SNP	375	1880	NC_007779	1865010	A	frequency=5.163097e-02
SNP	376	1881	NC_007779	1865012	C	frequency=5.396843e-02
SNP	377	1890	NC_007779	1918872	A	frequency=1
SNP	378	1894	NC_007779	1973476	A	frequency=1
SNP	379	1901	NC_007779	2005401	T	frequency=1
SNP	380	1917	NC_007779	2170094	A	frequency=1
SNP	381	1919	NC_007779	2178210	C	frequency=4.999542e-02
SNP	382	1929	NC_007779	2251498	A	frequency=6.138325e-02
SNP	383	1930	NC_007779	2251499	T	frequency=6.135607e-02
SNP	384	1931	NC_007779	2251503	G	frequency=6.300783e-02
SNP	385	1932	NC_007779	2251507	C	frequency=6.878138e-02
SNP	386	1933	NC_007779	2251514	G	frequency=7.828331e-02
SNP	387	1934	NC_007779	2251515	C	frequency=7.857180e-02
SNP	388	1935	NC_007779	2251519	A	frequency=7.815790e-02
SNP	389	1936	NC_007779	2251522	G	frequency=7.020760e-02
SNP	390	1937	NC_007779	2251525	G	frequency=7.053900e-02
SNP	391	1938	NC_007779	2251528	C	frequency=7.112026e-02
SNP	392	1939	NC_007779	2251531	T	frequency=7.056522e-02
SNP	393	1940	NC_007779	2251532	G	frequency=6.878376e-02
SNP	394	1941	NC_007779	2251537	C	frequency=6.858158e-02
SNP	395	1942	NC_007779	2251539	C	frequency=6.769562e-02
SNP	396	1943	NC_007779	2251543	A	frequency=6.842661e-02
SNP	397	1944	NC_007779	2251545	T	frequency=6.795788e-02
SNP	398	1945	NC_007779	2251555	A	frequency=6.768084e-02
SNP	399	1946	NC_007779	2251556	A	frequency=6.838894e-02
SNP	400	1947	NC_007779	2251575	T	frequency=8.080912e-02
SNP	401	1949	NC_007779	2251579	A	frequency=7.205439e-02
SNP	402	1950	NC_007779	2251585	G	frequency=5.272102e-02
DEL	403	3253,3284	NC_007779	2320795	1336	frequency=1
SNP	404	1973	NC_007779	2406075	T	frequency=1
SNP	405	1980	NC_007779	2416102	A	frequency=1
SNP	406	1996	NC_007779	2538628	T	frequency=1
SNP	407	2041	NC_007779	2705435	G	frequency=4.516125e-02
SNP	408	2129	NC_007779	2731753	G	frequency=4.339218e-02
SNP	409	2130	NC_007779	2731755	C	frequency=4.328060e-02
SNP	410	2131	NC_007779	2731756	C	frequency=4.303074e-02
SNP	411	2132	NC_007779	2731762	G	frequency=9.969950e-02
SNP	412	2133	NC_007779	2731768	C	frequency=1.393490e-01
SNP	413	2134	NC_007779	2731786	G	frequency=1.470337e-01
SNP	414	2136	NC_007779	2731794	C	frequency=1.432629e-01
SNP	415	2137	NC_007779	2731795	G	frequency=1.412168e-01
SNP	416	2138	NC_007779	2731798	C	frequency=1.427102e-01
SNP	417	2139	NC_007779	2731804	G	frequency=1.405635e-01
SNP	418	2140	NC_007779	2731805	C	frequency=1.433568e-01
SNP	419	2141	NC_007779	2731806	T	frequency=1.440945e-01
SNP	420	2142	NC_007779	2731807	C	frequency=1.443224e-01
SNP	421	2143	NC_007779	2731813	A	frequency=1.517005e-01
SNP	422	2144	NC_007779	2731814	C	frequency=1.518655e-01
SNP	423	2145	NC_007779	2731816	G	frequency=1.626019e-01
SNP	424	2146	NC_007779	2731822	G	frequency=1.587119e-01
SNP	425	2147	NC_007779	2731825	C	frequency=1.458645e-01
SNP	426	2148	NC_007779	2731827	G	frequency=1.460223e-01
SNP	427	2149	NC_007779	2731840	C	frequency=1.421800e-01
SNP	428	2150	NC_007779	2731855	C	frequency=6.195402e-02
SNP	429	2151	NC_007779	2731858	C	frequency=6.194496e-02
SNP	430	2152	NC_007779	2731861	G	frequency=3.048992e-02
SNP	431	2153	NC_007779	2739249	G	frequency=4.049492e-02
SNP	432	2154	NC_007779	2739252	G	frequency=4.378605e-02
SNP	433	2155	NC_007779	2739255	G	frequency=4.308319e-02
SNP	434	2156	NC_007779	2739257	T	frequency=4.295635e-02
SNP	435	2157	NC_007779	2739258	G	frequency=4.310417e-02
SNP	436	2158	NC_007779	2739270	T	frequency=4.228497e-02
SNP	437	2159	NC_007779	2739276	A	frequency=4.173183e-02
SNP	438	2160	NC_007779	2739279	G	frequency=4.130459e-02
SNP	439	2161	NC_007779	2739281	G	frequency=4.113960e-02
SNP	440	2162	NC_007779	2739282	C	frequency=4.095554e-02
SNP	441	2163	NC_007779	2739284	G	frequency=4.081631e-02
SNP	442	2164	NC_007779	2739285	G	frequency=4.001904e-02
SNP	443	2166	NC_007779	2739292	A	frequency=4.209423e-02
SNP	444	2167	NC_007779	2739293	C	frequency=4.695034e-02
SNP	445	2168	NC_007779	2739294	C	frequency=4.308319e-02
SNP	446	2169	NC_007779	2739300	C	frequency=4.248619e-02
SNP	447	2170	NC_007779	2739306	G	frequency=4.392719e-02
SNP	448	2171	NC_007779	2739309	G	frequency=4.264259e-02
SNP	449	2172	NC_007779	2739312	C	frequency=4.363632e-02
SNP	450	2173	NC_007779	2739321	C	frequency=2.875423e-02
SNP	451	2183	NC_007779	2801044	G	frequency=2.775764e-02
SNP	452	2184	NC_007779	2801048	C	frequency=2.751827e-02
SNP	453	2185	NC_007779	2801050	G	frequency=2.810383e-02
SNP	454	2186	NC_007779	2801060	A	frequency=2.766991e-02
SNP	455	2187	NC_007779	2801061	C	frequency=2.779198e-02
SNP	456	2188	NC_007779	2801062	C	frequency=2.756119e-02
SNP	457	2189	NC_007779	2801063	A	frequency=2.726841e-02
SNP	458	2190	NC_007779	2801065	C	frequency=2.754307e-02
SNP	459	2191	NC_007779	2801068	T	frequency=2.763748e-02
SNP	460	2192	NC_007779	2801071	G	frequency=2.737331e-02
SNP	461	2193	NC_007779	2801074	T	frequency=2.737236e-02
SNP	462	2195	NC_007779	2801095	G	frequency=6.474543e-02
SNP	463	2197	NC_007779	2801107	C	frequency=6.847811e-02
SNP	464	2198	NC_007779	2801110	G	frequency=6.445980e-02
SNP	465	2199	NC_007779	2801119	T	frequency=6.628895e-02
SNP	466	2200	NC_007779	2801125	C	frequency=6.572342e-02
SNP	467	2201	NC_007779	2801128	G	frequency=6.528378e-02
SNP	468	2202	NC_007779	2801134	G	frequency=4.601669e-02
SNP	469	2203	NC_007779	2801137	T	frequency=3.795433e-02
SNP	470	2204	NC_007779	2801139	A	frequency=3.841305e-02
SNP	471	2205	NC_007779	2801140	G	frequency=3.844929e-02
SNP	472	2206	NC_007779	2801143	C	frequency=4.041481e-02
SNP	473	2207	NC_007779	2801149	T	frequency=3.820610e-02
SNP	474	2208	NC_007779	2801152	C	frequency=3.905964e-02
SNP	475	2209	NC_007779	2801156	T	frequency=3.835773e-02
SNP	476	2210	NC_007779	2801157	C	frequency=3.874111e-02
SNP	477	2211	NC_007779	2801158	G	frequency=3.860569e-02
SNP	478	2212	NC_007779	2801161	C	frequency=4.136181e-02
SNP	479	2219	NC_007779	2802052	A	frequency=7.414818e-02
SNP	480	2220	NC_007779	2802067	T	frequency=6.998014e-02
SNP	481	2221	NC_007779	2802070	G	frequency=7.201004e-02
SNP	482	2222	NC_007779	2802073	T	frequency=6.903648e-02
SNP	483	2223	NC_007779	2802076	G	frequency=7.223988e-02
SNP	484	2224	NC_007779	2802079	C	frequency=7.126713e-02
SNP	485	2225	NC_007779	2802098	G	frequency=7.025290e-02
SNP	486	2226	NC_007779	2802100	T	frequency=7.169151e-02
SNP	487	2227	NC_007779	2802109	G	frequency=7.306004e-02
SNP	488	2228	NC_007779	2802112	T	frequency=6.680393e-02
SNP	489	2235	NC_007779	2802195	C	frequency=7.894182e-02
SNP	490	2237	NC_007779	2802200	C	frequency=7.818365e-02
SNP	491	2238	NC_007779	2802205	T	frequency=7.608700e-02
SNP	492	2239	NC_007779	2802208	C	frequency=7.496452e-02
SNP	493	2240	NC_007779	2802211	G	frequency=7.688665e-02
SNP	494	2241	NC_007779	2802217	C	frequency=7.402229e-02
SNP	495	2243	NC_007779	2802227	G	frequency=7.307625e-02
SNP	496	2244	NC_007779	2802232	T	frequency=7.367277e-02
SNP	497	2245	NC_007779	2802239	G	frequency=7.135677e-02
SNP	498	2246	NC_007779	2802241	T	frequency=6.991577e-02
SNP	499	2247	NC_007779	2802244	C	frequency=7.022238e-02
SNP	500	2249	NC_007779	2802251	T	frequency=7.104492e-02
SNP	501	2250	NC_007779	2802253	G	frequency=7.108307e-02
SNP	502	2251	NC_007779	2802256	G	frequency=6.583357e-02
SNP	503	2252	NC_007779	2802277	T	frequency=5.343103e-02
INS	504	3293	NC_007779	2865274	GCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACG	frequency=7.063255e-01
INS	505	3294	NC_007779	2865278	TTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGC	frequency=4.926387e-01
SNP	506	2264	NC_007779	2866111	G	frequency=1
SNP	507	2270	NC_007779	2905383	C	frequency=1.765442e-02
SNP	508	2272	NC_007779	2905395	C	frequency=1.800060e-02
SNP	509	2273	NC_007779	2905398	G	frequency=1.796246e-02
SNP	510	2274	NC_007779	2905401	G	frequency=1.849365e-02
SNP	511	2276	NC_007779	2905405	G	frequency=1.864910e-02
SNP	512	2278	NC_007779	2905408	G	frequency=1.906204e-02
SNP	513	2279	NC_007779	2905409	G	frequency=1.951218e-02
SNP	514	2280	NC_007779	2905412	C	frequency=1.956367e-02
DEL	515	2283	NC_007779	2905431	1	frequency=2.014828e-02
SNP	516	2284	NC_007779	2905432	A	frequency=2.087688e-02
SNP	517	2286	NC_007779	2905437	T	frequency=2.115726e-02
INS	518	2287	NC_007779	2905438	A	frequency=2.183342e-02	insert_position=1
SNP	519	2288	NC_007779	2905439	G	frequency=2.029705e-02
SNP	520	2291	NC_007779	2908098	A	frequency=2.789974e-02
SNP	521	2292	NC_007779	2908106	A	frequency=4.899883e-02
SNP	522	2293	NC_007779	2908122	T	frequency=5.754280e-02
SNP	523	2294	NC_007779	2908125	A	frequency=5.796671e-02
SNP	524	2295	NC_007779	2908134	G	frequency=6.194782e-02
SNP	525	2296	NC_007779	2908137	G	frequency=6.046915e-02
SNP	526	2297	NC_007779	2908143	G	frequency=5.954790e-02
SNP	527	2298	NC_007779	2908146	C	frequency=6.345940e-02
SNP	528	2299	NC_007779	2908149	G	frequency=6.332541e-02
SNP	529	2300	NC_007779	2908155	C	frequency=6.689644e-02
SNP	530	2301	NC_007779	2908160	A	frequency=6.689548e-02
SNP	531	2302	NC_007779	2908161	G	frequency=6.691599e-02
SNP	532	2303	NC_007779	2908165	T	frequency=6.805420e-02
SNP	533	2304	NC_007779	2908170	G	frequency=6.970978e-02
SNP	534	2305	NC_007779	2908173	G	frequency=7.462120e-02
SNP	535	2306	NC_007779	2908176	C	frequency=7.939100e-02
SNP	536	2307	NC_007779	2908179	G	frequency=7.017708e-02
SNP	537	2308	NC_007779	2908182	C	frequency=6.181288e-02
SNP	538	2309	NC_007779	2908185	A	frequency=4.513741e-02
SNP	539	2310	NC_007779	2908190	G	frequency=4.498005e-02
SNP	540	2319	NC_007779	3003330	A	frequency=1
SNP	541	2321	NC_007779	3033057	A	frequency=6.469631e-02
SNP	542	2322	NC_007779	3033060	C	frequency=6.689119e-02
SNP	543	2323	NC_007779	3033063	A	frequency=6.638193e-02
SNP	544	2324	NC_007779	3033066	G	frequency=6.477833e-02
SNP	545	2325	NC_007779	3033069	T	frequency=6.666183e-02
SNP	546	2326	NC_007779	3033075	C	frequency=6.348467e-02
SNP	547	2327	NC_007779	3033077	T	frequency=6.318808e-02
SNP	548	2328	NC_007779	3033078	A	frequency=6.313705e-02
SNP	549	2329	NC_007779	3033081	G	frequency=6.772852e-02
SNP	550	2330	NC_007779	3033084	G	frequency=6.711006e-02
SNP	551	2331	NC_007779	3033087	G	frequency=7.006216e-02
INS	552	2332	NC_007779	3033089	G	frequency=6.639051e-02	insert_position=1
DEL	553	2333	NC_007779	3033093	1	frequency=6.398678e-02
SNP	554	2334	NC_007779	3033103	A	frequency=6.249714e-02
SNP	555	2336	NC_007779	3033108	C	frequency=6.411409e-02
SNP	556	2337	NC_007779	3033120	G	frequency=6.168365e-02
SNP	557	2342	NC_007779	3049815	T	frequency=1
DEL	558	3296	NC_007779	3175000	3	frequency=1.074169e-01
SNP	559	2398	NC_007779	3306750	A	frequency=4.879999e-02
SNP	560	2399	NC_007779	3306753	G	frequency=4.959869e-02
SNP	561	2400	NC_007779	3306762	G	frequency=4.842854e-02
SNP	562	2401	NC_007779	3306765	C	frequency=4.690742e-02
SNP	563	2402	NC_007779	3306768	G	frequency=4.926920e-02
SNP	564	2403	NC_007779	3306769	T	frequency=4.816103e-02
SNP	565	2404	NC_007779	3306772	G	frequency=4.834175e-02
SNP	566	2405	NC_007779	3306773	A	frequency=4.849339e-02
SNP	567	2406	NC_007779	3306774	A	frequency=4.641581e-02
SNP	568	2407	NC_007779	3306777	G	frequency=4.874897e-02
SNP	569	2408	NC_007779	3306780	G	frequency=4.855680e-02
SNP	570	2409	NC_007779	3306798	A	frequency=3.535557e-02
SNP	571	2410	NC_007779	3306801	A	frequency=1.978970e-02
SNP	572	2411	NC_007779	3306804	C	frequency=1.905918e-02
SNP	573	2417	NC_007779	3314445	G	frequency=9.208345e-02
SNP	574	2418	NC_007779	3314448	G	frequency=9.972572e-02
SNP	575	2419	NC_007779	3314454	A	frequency=1.162100e-01
SNP	576	2420	NC_007779	3314457	A	frequency=1.221089e-01
SNP	577	2421	NC_007779	3314460	T	frequency=1.120152e-01
SNP	578	2422	NC_007779	3314472	A	frequency=1.050086e-01
SNP	579	2423	NC_007779	3314474	T	frequency=1.045742e-01
SNP	580	2424	NC_007779	3314475	C	frequency=1.046104e-01
SNP	581	2425	NC_007779	3314476	G	frequency=1.034069e-01
SNP	582	2426	NC_007779	3314481	A	frequency=1.061945e-01
SNP	583	2427	NC_007779	3314484	G	frequency=1.070938e-01
SNP	584	2428	NC_007779	3314487	C	frequency=1.096497e-01
SNP	585	2429	NC_007779	3314489	A	frequency=1.100340e-01
SNP	586	2430	NC_007779	3314492	T	frequency=1.123819e-01
SNP	587	2432	NC_007779	3314511	G	frequency=1.050720e-01
SNP	588	2433	NC_007779	3314513	C	frequency=1.038532e-01
SNP	589	2434	NC_007779	3314514	G	frequency=1.038103e-01
SNP	590	2435	NC_007779	3314523	C	frequency=1.087751e-01
SNP	591	2436	NC_007779	3314524	T	frequency=1.096029e-01
SNP	592	2437	NC_007779	3314529	A	frequency=7.108545e-02
SNP	593	2438	NC_007779	3314532	A	frequency=7.124949e-02
SNP	594	2441	NC_007779	3326032	A	frequency=4.067612e-02
SNP	595	2442	NC_007779	3326035	C	frequency=4.123783e-02
SNP	596	2443	NC_007779	3326038	G	frequency=4.110241e-02
SNP	597	2445	NC_007779	3326050	A	frequency=1.249156e-01
DEL	598	2446	NC_007779	3326059	1	frequency=1.157780e-01
SNP	599	2447	NC_007779	3326062	T	frequency=1.175041e-01
SNP	600	2448	NC_007779	3326064	T	frequency=1.136923e-01
INS	601	2449	NC_007779	3326067	C	frequency=1.178579e-01	insert_position=1
SNP	602	2450	NC_007779	3326071	G	frequency=1.165862e-01
SNP	603	2451	NC_007779	3326077	A	frequency=1.141405e-01
SNP	604	2452	NC_007779	3326079	T	frequency=1.140938e-01
SNP	605	2453	NC_007779	3326080	A	frequency=1.152730e-01
SNP	606	2454	NC_007779	3326085	A	frequency=1.149554e-01
SNP	607	2455	NC_007779	3326092	G	frequency=1.153097e-01
SNP	608	2456	NC_007779	3326098	A	frequency=1.159229e-01
SNP	609	2457	NC_007779	3326101	G	frequency=1.182675e-01
SNP	610	2458	NC_007779	3326107	G	frequency=1.220956e-01
SNP	611	2459	NC_007779	3326125	G	frequency=9.708834e-02
SNP	612	2460	NC_007779	3326134	C	frequency=4.841805e-02
DEL	613	3302	NC_007779	3342930	3	frequency=2.931351e-02
SNP	614	2470	NC_007779	3397813	G	frequency=1
SNP	615	2479	NC_007779	3441343	G	frequency=8.946562e-02
SNP	616	2480	NC_007779	3441347	A	frequency=9.569693e-02
SNP	617	2481	NC_007779	3441352	G	frequency=1.223383e-01
SNP	618	2482	NC_007779	3441356	G	frequency=1.210704e-01
SNP	619	2483	NC_007779	3441358	G	frequency=1.208730e-01
SNP	620	2485	NC_007779	3441364	T	frequency=1.354003e-01
SNP	621	2486	NC_007779	3441370	C	frequency=1.414814e-01
SNP	622	2487	NC_007779	3441376	C	frequency=1.412997e-01
SNP	623	2488	NC_007779	3441379	C	frequency=1.398635e-01
SNP	624	2489	NC_007779	3441380	A	frequency=1.402693e-01
SNP	625	2490	NC_007779	3441382	C	frequency=1.453176e-01
SNP	626	2491	NC_007779	3441388	C	frequency=1.678386e-01
SNP	627	2492	NC_007779	3441391	G	frequency=1.671648e-01
SNP	628	2493	NC_007779	3441401	A	frequency=1.621385e-01
SNP	629	2494	NC_007779	3441402	A	frequency=1.655045e-01
SNP	630	2495	NC_007779	3441403	G	frequency=1.655393e-01
SNP	631	2496	NC_007779	3441404	G	frequency=1.727066e-01
SNP	632	2497	NC_007779	3441406	C	frequency=1.732254e-01
SNP	633	2498	NC_007779	3441431	C	frequency=1.235862e-01
SNP	634	2499	NC_007779	3441440	T	frequency=7.454395e-02
SNP	635	2500	NC_007779	3441441	C	frequency=7.428074e-02
SNP	636	2502	NC_007779	3441452	G	frequency=3.835869e-02
SNP	637	2503	NC_007779	3441454	T	frequency=3.861332e-02
SNP	638	2506	NC_007779	3441952	T	frequency=7.627487e-02
SNP	639	2507	NC_007779	3441958	C	frequency=7.401657e-02
SNP	640	2509	NC_007779	3441967	C	frequency=7.163715e-02
SNP	641	2510	NC_007779	3441970	C	frequency=7.137918e-02
SNP	642	2511	NC_007779	3441976	G	frequency=7.015133e-02
SNP	643	2512	NC_007779	3441977	G	frequency=7.006550e-02
SNP	644	2513	NC_007779	3441979	A	frequency=6.894493e-02
SNP	645	2514	NC_007779	3441985	C	frequency=9.510851e-02
SNP	646	2515	NC_007779	3441988	C	frequency=9.348297e-02
SNP	647	2516	NC_007779	3442007	A	frequency=1.214991e-01
SNP	648	2517	NC_007779	3442017	C	frequency=1.244326e-01
SNP	649	2518	NC_007779	3442018	T	frequency=1.207356e-01
SNP	650	2519	NC_007779	3442021	C	frequency=1.171532e-01
SNP	651	2520	NC_007779	3442024	C	frequency=1.137271e-01
SNP	652	2521	NC_007779	3442030	A	frequency=1.238894e-01
SNP	653	2522	NC_007779	3442033	C	frequency=1.207767e-01
INS	654	2523	NC_007779	3442037	C	frequency=5.172443e-02	insert_position=1
SNP	655	2524	NC_007779	3442040	A	frequency=5.170107e-02
SNP	656	2526	NC_007779	3442044	C	frequency=5.327892e-02
SNP	657	2527	NC_007779	3442048	T	frequency=5.321741e-02
SNP	658	2528	NC_007779	3442049	A	frequency=5.313635e-02
SNP	659	2529	NC_007779	3442050	C	frequency=5.604219e-02
SNP	660	2530	NC_007779	3442054	C	frequency=5.821896e-02
SNP	661	2531	NC_007779	3442063	C	frequency=5.397081e-02
SNP	662	2532	NC_007779	3442069	C	frequency=5.727148e-02
SNP	663	2533	NC_007779	3442075	G	frequency=4.082394e-02
SNP	664	2534	NC_007779	3442078	G	frequency=3.875637e-02
SNP	665	2535	NC_007779	3442084	C	frequency=2.686787e-02
SNP	666	2559	NC_007779	3449979	T	frequency=3.192806e-02
SNP	667	2560	NC_007779	3449991	A	frequency=8.116341e-02
SNP	668	2561	NC_007779	3449994	T	frequency=8.073282e-02
SNP	669	2562	NC_007779	3449997	C	frequency=8.104706e-02
SNP	670	2563	NC_007779	3450003	C	frequency=7.890797e-02
SNP	671	2564	NC_007779	3450006	A	frequency=7.631826e-02
SNP	672	2565	NC_007779	3450008	C	frequency=7.660151e-02
SNP	673	2566	NC_007779	3450012	G	frequency=7.554340e-02
SNP	674	2567	NC_007779	3450018	C	frequency=7.713270e-02
SNP	675	2568	NC_007779	3450021	G	frequency=5.938244e-02
SNP	676	2569	NC_007779	3450024	C	frequency=6.524944e-02
SNP	677	2570	NC_007779	3450030	A	frequency=6.432772e-02
SNP	678	2571	NC_007779	3450039	G	frequency=6.554127e-02
SNP	679	2572	NC_007779	3450048	C	frequency=6.895065e-02
SNP	680	2573	NC_007779	3450051	A	frequency=6.661797e-02
SNP	681	2574	NC_007779	3450069	G	frequency=6.319618e-02
SNP	682	2576	NC_007779	3450210	A	frequency=3.993225e-02
SNP	683	2577	NC_007779	3450213	A	frequency=3.858280e-02
SNP	684	2578	NC_007779	3450219	C	frequency=3.996563e-02
SNP	685	2579	NC_007779	3450220	A	frequency=4.199314e-02
SNP	686	2580	NC_007779	3450221	G	frequency=4.200840e-02
SNP	687	2581	NC_007779	3450234	A	frequency=1.257415e-01
SNP	688	2582	NC_007779	3450240	G	frequency=1.222887e-01
SNP	689	2583	NC_007779	3450246	C	frequency=1.265302e-01
SNP	690	2584	NC_007779	3450247	T	frequency=1.307540e-01
SNP	691	2585	NC_007779	3450248	T	frequency=1.318774e-01
SNP	692	2586	NC_007779	3450252	C	frequency=1.308465e-01
SNP	693	2587	NC_007779	3450254	G	frequency=1.302490e-01
SNP	694	2588	NC_007779	3450255	C	frequency=1.300092e-01
SNP	695	2589	NC_007779	3450258	G	frequency=1.314702e-01
SNP	696	2590	NC_007779	3450261	G	frequency=1.267796e-01
SNP	697	2591	NC_007779	3450265	A	frequency=1.267009e-01
SNP	698	2592	NC_007779	3450267	A	frequency=1.270275e-01
SNP	699	2593	NC_007779	3450270	A	frequency=1.254478e-01
SNP	700	2594	NC_007779	3450273	C	frequency=1.226802e-01
SNP	701	2595	NC_007779	3450279	G	frequency=1.158376e-01
SNP	702	2596	NC_007779	3450303	C	frequency=8.647823e-02
SNP	703	2597	NC_007779	3451558	G	frequency=5.100060e-02
SNP	704	2598	NC_007779	3451560	T	frequency=5.008984e-02
SNP	705	2599	NC_007779	3451569	G	frequency=9.323502e-02
SNP	706	2600	NC_007779	3451570	C	frequency=9.625769e-02
SNP	707	2601	NC_007779	3451585	G	frequency=1.626644e-01
SNP	708	2602	NC_007779	3451588	A	frequency=1.626754e-01
SNP	709	2603	NC_007779	3451600	C	frequency=1.891565e-01
SNP	710	2604	NC_007779	3451602	G	frequency=1.872373e-01
SNP	711	2605	NC_007779	3451605	T	frequency=1.926861e-01
SNP	712	2606	NC_007779	3451606	T	frequency=1.926641e-01
SNP	713	2607	NC_007779	3451615	C	frequency=2.324581e-01
SNP	714	2608	NC_007779	3451624	A	frequency=2.620554e-01
SNP	715	2609	NC_007779	3451630	G	frequency=2.782459e-01
SNP	716	2610	NC_007779	3451648	A	frequency=3.087134e-01
SNP	717	2612	NC_007779	3451677	T	frequency=2.756529e-01
SNP	718	2613	NC_007779	3451680	T	frequency=2.468009e-01
SNP	719	2614	NC_007779	3451682	G	frequency=2.461348e-01
SNP	720	2615	NC_007779	3451683	A	frequency=2.460361e-01
SNP	721	2616	NC_007779	3451687	C	frequency=2.476544e-01
SNP	722	2617	NC_007779	3451689	G	frequency=2.530208e-01
SNP	723	2618	NC_007779	3451702	A	frequency=2.587657e-01
SNP	724	2619	NC_007779	3451708	A	frequency=2.510481e-01
SNP	725	2620	NC_007779	3451714	C	frequency=2.411947e-01
SNP	726	2621	NC_007779	3451726	T	frequency=4.626751e-02
SNP	727	2622	NC_007779	3451731	G	frequency=1.867771e-01
SNP	728	2623	NC_007779	3451735	C	frequency=1.612687e-01
SNP	729	2624	NC_007779	3451753	G	frequency=1.157684e-01
SNP	730	2625	NC_007779	3451756	C	frequency=9.955788e-02
SNP	731	2626	NC_007779	3451759	C	frequency=6.274605e-02
SNP	732	2627	NC_007779	3451761	A	frequency=6.208038e-02
SNP	733	2628	NC_007779	3451762	A	frequency=6.207323e-02
SNP	734	2629	NC_007779	3451768	G	frequency=6.147194e-02
SNP	735	2630	NC_007779	3451769	A	frequency=6.237698e-02
SNP	736	2631	NC_007779	3451770	A	frequency=6.273890e-02
SNP	737	2632	NC_007779	3451772	G	frequency=6.139803e-02
SNP	738	2633	NC_007779	3451773	G	frequency=6.057596e-02
SNP	739	2635	NC_007779	3451783	G	frequency=5.896950e-02
SNP	740	2636	NC_007779	3451788	A	frequency=5.750322e-02
SNP	741	2637	NC_007779	3451792	G	frequency=4.594231e-02
SNP	742	2638	NC_007779	3451795	G	frequency=4.494190e-02
SNP	743	2639	NC_007779	3451799	A	frequency=3.176022e-02
SNP	744	2642	NC_007779	3453379	C	frequency=3.538322e-02
SNP	745	2643	NC_007779	3453399	G	frequency=3.565979e-02
SNP	746	2644	NC_007779	3453400	G	frequency=3.736973e-02
SNP	747	2645	NC_007779	3453409	A	frequency=3.603554e-02
SNP	748	2646	NC_007779	3453415	G	frequency=3.480816e-02
SNP	749	2647	NC_007779	3453421	C	frequency=3.544903e-02
SNP	750	2648	NC_007779	3453424	G	frequency=3.855991e-02
SNP	751	2649	NC_007779	3453433	A	frequency=3.975487e-02
SNP	752	2650	NC_007779	3453438	T	frequency=4.057312e-02
SNP	753	2651	NC_007779	3453441	C	frequency=3.997231e-02
SNP	754	2652	NC_007779	3453442	A	frequency=3.988075e-02
SNP	755	2653	NC_007779	3453444	T	frequency=3.982925e-02
SNP	756	2654	NC_007779	3453446	G	frequency=3.961754e-02
SNP	757	2655	NC_007779	3453448	C	frequency=3.818703e-02
SNP	758	2656	NC_007779	3453454	G	frequency=3.816509e-02
SNP	759	2657	NC_007779	3453459	T	frequency=3.222752e-02
SNP	760	2658	NC_007779	3453814	G	frequency=3.785706e-02
SNP	761	2659	NC_007779	3453829	A	frequency=5.700827e-02
SNP	762	2660	NC_007779	3453832	C	frequency=5.834103e-02
SNP	763	2661	NC_007779	3453835	A	frequency=5.974054e-02
SNP	764	2662	NC_007779	3453838	C	frequency=6.426048e-02
SNP	765	2663	NC_007779	3453847	C	frequency=6.601334e-02
SNP	766	2664	NC_007779	3453849	G	frequency=6.279039e-02
SNP	767	2665	NC_007779	3453856	C	frequency=6.244230e-02
SNP	768	2667	NC_007779	3453865	C	frequency=6.392336e-02
SNP	769	2668	NC_007779	3453867	G	frequency=6.632853e-02
SNP	770	2669	NC_007779	3453868	A	frequency=6.625557e-02
SNP	771	2671	NC_007779	3453871	C	frequency=6.421614e-02
SNP	772	2672	NC_007779	3453879	A	frequency=6.176805e-02
SNP	773	2673	NC_007779	3453895	G	frequency=6.189966e-02
SNP	774	2695	NC_007779	3460411	G	frequency=4.435253e-02
SNP	775	2696	NC_007779	3460414	A	frequency=4.364204e-02
SNP	776	2697	NC_007779	3460417	G	frequency=4.342556e-02
SNP	777	2698	NC_007779	3460420	G	frequency=4.339409e-02
SNP	778	2699	NC_007779	3460423	A	frequency=3.586769e-02
SNP	779	2700	NC_007779	3460429	A	frequency=3.434277e-02
SNP	780	2701	NC_007779	3460447	A	frequency=3.341389e-02
SNP	781	2702	NC_007779	3460468	C	frequency=5.320930e-02
SNP	782	2703	NC_007779	3460471	G	frequency=5.516005e-02
SNP	783	2704	NC_007779	3460473	T	frequency=5.583239e-02
SNP	784	2705	NC_007779	3460474	G	frequency=5.622673e-02
SNP	785	2706	NC_007779	3460486	G	frequency=5.983400e-02
SNP	786	2708	NC_007779	3460492	A	frequency=3.767776e-02
SNP	787	2709	NC_007779	3460493	G	frequency=3.808403e-02
SNP	788	2710	NC_007779	3460494	C	frequency=4.078388e-02
SNP	789	2711	NC_007779	3460498	G	frequency=7.450724e-02
SNP	790	2735	NC_007779	3682560	A	frequency=7.694197e-02
SNP	791	2737	NC_007779	3682571	G	frequency=7.658195e-02
SNP	792	2739	NC_007779	3682577	C	frequency=7.451773e-02
SNP	793	2740	NC_007779	3682595	C	frequency=8.036566e-02
SNP	794	2741	NC_007779	3682601	T	frequency=8.049393e-02
SNP	795	2742	NC_007779	3682607	G	frequency=8.627510e-02
SNP	796	2743	NC_007779	3682613	A	frequency=8.396721e-02
SNP	797	2744	NC_007779	3682616	C	frequency=8.781147e-02
SNP	798	2745	NC_007779	3682622	A	frequency=8.669186e-02
SNP	799	2746	NC_007779	3682628	A	frequency=8.451509e-02
SNP	800	2747	NC_007779	3682637	G	frequency=8.353186e-02
SNP	801	2748	NC_007779	3682643	C	frequency=5.953979e-02
SNP	802	2749	NC_007779	3682646	G	frequency=4.498386e-02
SNP	803	2768	NC_007779	3717810	C	frequency=4.077435e-02
SNP	804	2769	NC_007779	3717816	G	frequency=4.094696e-02
SNP	805	2771	NC_007779	3717820	A	frequency=4.326057e-02
SNP	806	2772	NC_007779	3717825	A	frequency=4.496384e-02
SNP	807	2773	NC_007779	3717826	A	frequency=4.500294e-02
SNP	808	2774	NC_007779	3717827	A	frequency=4.535961e-02
SNP	809	2775	NC_007779	3717828	C	frequency=4.511547e-02
SNP	810	2776	NC_007779	3717834	G	frequency=4.225063e-02
SNP	811	2777	NC_007779	3717837	G	frequency=3.969097e-02
SNP	812	2778	NC_007779	3717840	C	frequency=4.520702e-02
SNP	813	2779	NC_007779	3717844	A	frequency=4.440308e-02
SNP	814	2780	NC_007779	3717858	C	frequency=4.119301e-02
SNP	815	2782	NC_007779	3717873	C	frequency=6.544161e-02
SNP	816	2783	NC_007779	3717876	C	frequency=6.816864e-02
SNP	817	2784	NC_007779	3717880	G	frequency=7.739830e-02
SNP	818	2785	NC_007779	3717888	C	frequency=8.275127e-02
SNP	819	2786	NC_007779	3717891	G	frequency=6.557083e-02
SNP	820	2787	NC_007779	3717892	T	frequency=6.562853e-02
SNP	821	2788	NC_007779	3717895	G	frequency=6.490040e-02
SNP	822	2790	NC_007779	3717908	A	frequency=6.977892e-02
SNP	823	2791	NC_007779	3717909	G	frequency=6.975079e-02
SNP	824	2792	NC_007779	3717913	G	frequency=6.889057e-02
SNP	825	2793	NC_007779	3717915	C	frequency=7.174492e-02
SNP	826	2794	NC_007779	3717918	C	frequency=7.221937e-02
SNP	827	2795	NC_007779	3717921	G	frequency=7.333565e-02
SNP	828	2796	NC_007779	3717924	T	frequency=7.362843e-02
SNP	829	2797	NC_007779	3717925	A	frequency=7.366562e-02
SNP	830	2798	NC_007779	3717931	G	frequency=7.685566e-02
SNP	831	2799	NC_007779	3717932	T	frequency=7.643080e-02
SNP	832	2800	NC_007779	3717933	C	frequency=7.659435e-02
SNP	833	2801	NC_007779	3717937	G	frequency=7.564974e-02
SNP	834	2802	NC_007779	3717939	G	frequency=7.718325e-02
SNP	835	2803	NC_007779	3717942	G	frequency=7.792997e-02
SNP	836	2805	NC_007779	3717963	C	frequency=6.816721e-02
DEL	837	3256,3304	NC_007779	3742936	1336	frequency=1
DEL	838	2816	NC_007779	3750122	1	frequency=9.625463e-01
SNP	839	2817	NC_007779	3750123	T	frequency=3.730106e-02
DEL	840	3257,3309	NC_007779	3750591	1199	frequency=1
SNP	841	2824	NC_007779	3818803	C	frequency=1.652431e-02
SNP	842	2839	NC_007779	3884404	C	frequency=4.842281e-02
SNP	843	2841	NC_007779	3884425	C	frequency=5.171490e-02
SNP	844	2842	NC_007779	3884434	C	frequency=2.833652e-02
SNP	845	2844	NC_007779	3884436	C	frequency=2.853203e-02
SNP	846	2845	NC_007779	3884437	G	frequency=2.866173e-02
SNP	847	2847	NC_007779	3884446	C	frequency=4.909277e-02
SNP	848	2849	NC_007779	3884452	G	frequency=5.236435e-02
SNP	849	2851	NC_007779	3884461	C	frequency=4.973936e-02
SNP	850	2852	NC_007779	3884464	C	frequency=4.932165e-02
SNP	851	2853	NC_007779	3884473	C	frequency=4.778290e-02
SNP	852	2854	NC_007779	3884474	A	frequency=4.871225e-02
SNP	853	2855	NC_007779	3884476	C	frequency=4.908752e-02
SNP	854	2856	NC_007779	3884479	A	frequency=4.784870e-02
SNP	855	2857	NC_007779	3884482	C	frequency=4.581451e-02
SNP	856	2858	NC_007779	3884485	G	frequency=5.131912e-02
SNP	857	2864	NC_007779	3898657	G	frequency=1
DEL	858	3258,3311	NC_007779	3958123	34	frequency=1
SNP	859	2888	NC_007779	4051684	C	frequency=8.053684e-02
SNP	860	2889	NC_007779	4051688	C	frequency=8.207560e-02
SNP	861	2890	NC_007779	4051689	G	frequency=7.822847e-02
SNP	862	2891	NC_007779	4051690	A	frequency=7.707977e-02
SNP	863	2892	NC_007779	4051694	A	frequency=8.462906e-02
SNP	864	2893	NC_007779	4051695	A	frequency=8.303022e-02
SNP	865	2894	NC_007779	4051699	C	frequency=8.146667e-02
SNP	866	2895	NC_007779	4051705	C	frequency=7.949781e-02
SNP	867	2896	NC_007779	4051706	A	frequency=7.987595e-02
SNP	868	2897	NC_007779	4051708	G	frequency=9.136677e-02
SNP	869	2898	NC_007779	4051711	C	frequency=8.734798e-02
SNP	870	2899	NC_007779	4051723	A	frequency=8.630466e-02
SNP	871	2900	NC_007779	4051729	G	frequency=6.829262e-02
SNP	872	2901	NC_007779	4051732	C	frequency=6.827307e-02
SNP	873	2902	NC_007779	4051741	C	frequency=3.962231e-02
SNP	874	2914	NC_007779	4090749	T	frequency=1
SNP	875	2922	NC_007779	4153710	C	frequency=4.958057e-02
SNP	876	2925	NC_007779	4165991	C	frequency=1
SNP	877	2926	NC_007779	4166073	G	frequency=6.634045e-02
SNP	878	2927	NC_007779	4166076	C	frequency=6.507683e-02
SNP	879	2928	NC_007779	4166098	A	frequency=9.219980e-02
SNP	880	2929	NC_007779	4166101	G	frequency=1.052203e-01
SNP	881	2930	NC_007779	4166103	G	frequency=1.052299e-01
SNP	882	2931	NC_007779	4166106	C	frequency=1.052389e-01
SNP	883	2932	NC_007779	4166107	G	frequency=1.049600e-01
SNP	884	2933	NC_007779	4166109	T	frequency=1.049356e-01
SNP	885	2934	NC_007779	4166112	C	frequency=9.231901e-02
SNP	886	2935	NC_007779	4166115	T	frequency=9.247589e-02
SNP	887	2936	NC_007779	4166127	G	frequency=9.916592e-02
SNP	888	2937	NC_007779	4166142	C	frequency=1.039720e-01
SNP	889	2938	NC_007779	4166145	C	frequency=1.019096e-01
SNP	890	2939	NC_007779	4166149	A	frequency=1.040993e-01
SNP	891	2940	NC_007779	4166151	G	frequency=1.049786e-01
SNP	892	2941	NC_007779	4166153	T	frequency=1.036844e-01
SNP	893	2942	NC_007779	4166157	C	frequency=9.943962e-02
SNP	894	2943	NC_007779	4166164	T	frequency=4.088974e-02
SNP	895	2945	NC_007779	4166169	C	frequency=3.080273e-02
SNP	896	2950	NC_007779	4168097	C	frequency=3.815746e-02
SNP	897	2951	NC_007779	4168098	A	frequency=3.841972e-02
SNP	898	2952	NC_007779	4168100	A	frequency=3.842831e-02
SNP	899	2953	NC_007779	4168107	T	frequency=3.943253e-02
SNP	900	2954	NC_007779	4168110	A	frequency=3.642559e-02
SNP	901	2955	NC_007779	4168114	G	frequency=3.624249e-02
SNP	902	2956	NC_007779	4168122	G	frequency=3.745747e-02
SNP	903	2957	NC_007779	4168123	T	frequency=3.349686e-02
SNP	904	2958	NC_007779	4168124	C	frequency=3.426743e-02
SNP	905	2959	NC_007779	4168125	C	frequency=3.454304e-02
SNP	906	2960	NC_007779	4168129	T	frequency=3.581047e-02
SNP	907	2961	NC_007779	4168130	C	frequency=3.570938e-02
SNP	908	2962	NC_007779	4168131	C	frequency=3.569889e-02
SNP	909	2963	NC_007779	4168137	G	frequency=3.717422e-02
SNP	910	2964	NC_007779	4168140	T	frequency=3.694725e-02
SNP	911	2965	NC_007779	4168146	T	frequency=3.343773e-02
SNP	912	2966	NC_007779	4168153	G	frequency=2.015972e-02
SNP	913	2967	NC_007779	4168155	T	frequency=2.036572e-02
SNP	914	2968	NC_007779	4168158	T	frequency=2.125931e-02
SNP	915	2970	NC_007779	4168164	G	frequency=2.139854e-02
SNP	916	2972	NC_007779	4168290	G	frequency=7.774591e-02
SNP	917	2973	NC_007779	4168293	C	frequency=7.690668e-02
SNP	918	2974	NC_007779	4168303	G	frequency=1.073818e-01
SNP	919	2975	NC_007779	4168306	C	frequency=1.070318e-01
SNP	920	2976	NC_007779	4168308	G	frequency=1.065998e-01
SNP	921	2977	NC_007779	4168317	C	frequency=1.027746e-01
SNP	922	2978	NC_007779	4168329	G	frequency=1.038995e-01
SNP	923	2979	NC_007779	4168335	G	frequency=9.896803e-02
SNP	924	2980	NC_007779	4168338	C	frequency=1.006308e-01
SNP	925	2981	NC_007779	4168344	A	frequency=9.825754e-02
SNP	926	2982	NC_007779	4168348	A	frequency=9.622288e-02
SNP	927	2983	NC_007779	4168350	C	frequency=9.571791e-02
SNP	928	2984	NC_007779	4168356	C	frequency=9.972191e-02
SNP	929	2985	NC_007779	4168374	C	frequency=8.256197e-02
SNP	930	2986	NC_007779	4168377	G	frequency=6.392002e-02
SNP	931	2987	NC_007779	4168380	C	frequency=5.599117e-02
SNP	932	2988	NC_007779	4168387	A	frequency=2.776337e-02
SNP	933	2996	NC_007779	4169320	T	frequency=2.291393e-01
SNP	934	2997	NC_007779	4169326	C	frequency=2.135639e-01
SNP	935	2998	NC_007779	4169330	G	frequency=1.640539e-01
SNP	936	2999	NC_007779	4169331	C	frequency=1.565008e-01
SNP	937	3000	NC_007779	4169332	T	frequency=1.536417e-01
SNP	938	3002	NC_007779	4169338	C	frequency=2.957821e-01
SNP	939	3003	NC_007779	4169350	C	frequency=3.172803e-01
SNP	940	3004	NC_007779	4169351	A	frequency=3.111973e-01
SNP	941	3005	NC_007779	4169353	C	frequency=3.084073e-01
SNP	942	3006	NC_007779	4169356	G	frequency=3.027449e-01
SNP	943	3007	NC_007779	4169395	T	frequency=3.539553e-01
SNP	944	3008	NC_007779	4169401	T	frequency=3.558636e-01
SNP	945	3009	NC_007779	4169404	C	frequency=3.551774e-01
SNP	946	3010	NC_007779	4169407	C	frequency=3.553829e-01
SNP	947	3011	NC_007779	4169410	T	frequency=3.582902e-01
SNP	948	3012	NC_007779	4169413	C	frequency=3.580608e-01
SNP	949	3013	NC_007779	4169419	T	frequency=3.676033e-01
SNP	950	3015	NC_007779	4169444	G	frequency=2.976027e-01
SNP	951	3016	NC_007779	4169446	T	frequency=3.248458e-01
SNP	952	3017	NC_007779	4169449	C	frequency=3.545399e-01
SNP	953	3018	NC_007779	4169454	C	frequency=3.735080e-01
SNP	954	3019	NC_007779	4169458	C	frequency=3.659072e-01
SNP	955	3020	NC_007779	4169464	T	frequency=3.332591e-01
DEL	956	3259,3314	NC_007779	4310363	1199	frequency=1
SNP	957	3162	NC_007779	4347339	T	frequency=2.293615e-01
SNP	958	3164	NC_007779	4348801	T	frequency=1.502695e-01
SNP	959	3165	NC_007779	4353540	C	frequency=9.420395e-03
DEL	960	3166,3167	NC_007779	4371271	2	frequency=1
SNP	961	3216	NC_007779	4546535	A	frequency=1
SNP	962	3228	NC_007779	4633709	A	frequency=2.890587e-02
SNP	963	3230	NC_007779	4633715	G	frequency=2.949333e-02
SNP	964	3231	NC_007779	4633720	C	frequency=3.369617e-02
SNP	965	3232	NC_007779	4633721	G	frequency=2.989578e-02
SNP	966	3233	NC_007779	4633736	G	frequency=3.144360e-02
SNP	967	3234	NC_007779	4633738	T	frequency=3.087616e-02
SNP	968	3235	NC_007779	4633740	T	frequency=3.196526e-02
SNP	969	3236	NC_007779	4633745	T	frequency=3.159428e-02
SNP	970	3237	NC_007779	4633759	A	frequency=3.392887e-02
SNP	971	3238	NC_007779	4633760	A	frequency=3.393173e-02
SNP	972	3240	NC_007779	4633762	A	frequency=3.392124e-02
SNP	973	3241	NC_007779	4633774	C	frequency=3.242302e-02
SNP	974	3242	NC_007779	4633775	G	frequency=3.248405e-02
SNP	975	3243	NC_007779	4633778	A	frequency=3.127670e-02
RA	976	.	NC_007779	301	1	.	T	bias_e_value=2772970	bias_p_value=0.596808	fisher_strand_p_value=0.502962	frequency=9.346008e-03	genotype_quality=1018.9	ks_quality_p_value=0.497392	log10_base_likelihood=-8.34943	log10_qual_likelihood_position_model=1.32514	log10_strand_likelihood_position_model=0.518726	new_cov=0/2	polymorphism_quality=2.9	quality=2.9	quality_position_model=1.91624e-08	ref_cov=96/116	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=96/118
RA	977	.	NC_007779	5595	0	G	T	bias_e_value=342278	bias_p_value=0.0736663	fisher_strand_p_value=0.0139776	frequency=3.439140e-02	genotype_quality=803.9	ks_quality_p_value=1	log10_base_likelihood=-7.32646	log10_qual_likelihood_position_model=11.9223	log10_strand_likelihood_position_model=2.12007	new_cov=1/11	polymorphism_quality=1.8	quality=1.8	quality_position_model=Inf	ref_cov=109/128	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=110/139
RA	978	.	NC_007779	10627	1	.	C	bias_e_value=1307500	bias_p_value=0.281406	fisher_strand_p_value=0.0797418	frequency=1.297379e-02	genotype_quality=1102.6	ks_quality_p_value=1	log10_base_likelihood=-8.29555	log10_qual_likelihood_position_model=4.1029	log10_strand_likelihood_position_model=1.09831	new_cov=0/3	polymorphism_quality=2.8	quality=2.8	quality_position_model=6.95219e-05	ref_cov=131/97	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=131/100
RA	979	.	NC_007779	11143	0	G	T	bias_e_value=0.264425	bias_p_value=5.69105e-08	fisher_strand_p_value=2.74764e-09	frequency=6.961966e-02	genotype_quality=776.9	ks_quality_p_value=1	log10_base_likelihood=-8.82513	log10_qual_likelihood_position_model=21.3626	log10_strand_likelihood_position_model=8.56104	new_cov=0/24	polymorphism_quality=3.4	quality=3.4	quality_position_model=Inf	ref_cov=125/86	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=125/111
RA	980	.	NC_007779	13269	0	A	G	bias_e_value=4323620	bias_p_value=0.930544	fisher_strand_p_value=0.657868	frequency=7.990360e-02	genotype_quality=918.0	ks_quality_p_value=0.989932	log10_base_likelihood=-56.6052	log10_qual_likelihood_position_model=7.59684	log10_strand_likelihood_position_model=0.833659	new_cov=10/12	polymorphism_quality=51.5	quality=51.5	quality_position_model=1.549e-50	ref_cov=132/121	tot_cov=142/133
RA	981	.	NC_007779	13271	0	C	T	bias_e_value=4346440	bias_p_value=0.935455	fisher_strand_p_value=0.66294	frequency=7.953739e-02	genotype_quality=977.1	ks_quality_p_value=1	log10_base_likelihood=-52.098	log10_qual_likelihood_position_model=8.86624	log10_strand_likelihood_position_model=0.804479	new_cov=10/12	polymorphism_quality=47.0	quality=47.0	quality_position_model=9.2215e-45	ref_cov=129/125	tot_cov=139/137
RA	982	.	NC_007779	13275	0	A	C	bias_e_value=4362920	bias_p_value=0.939003	fisher_strand_p_value=0.686212	frequency=9.316063e-02	genotype_quality=931.1	ks_quality_p_value=0.978867	log10_base_likelihood=-85.2758	log10_qual_likelihood_position_model=10.9492	log10_strand_likelihood_position_model=0.827623	new_cov=12/14	polymorphism_quality=80.3	quality=80.3	quality_position_model=5.95299e-76	ref_cov=128/125	tot_cov=140/139
RA	983	.	NC_007779	13279	0	A	G	bias_e_value=4579770	bias_p_value=0.985674	fisher_strand_p_value=0.838178	frequency=9.544611e-02	genotype_quality=879.9	ks_quality_p_value=0.996896	log10_base_likelihood=-67.0541	log10_qual_likelihood_position_model=8.96976	log10_strand_likelihood_position_model=0.805561	new_cov=12/14	polymorphism_quality=62.0	quality=62.0	quality_position_model=1.11865e-59	ref_cov=121/125	tot_cov=133/139
RA	984	.	NC_007779	13281	0	C	T	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=9.843683e-02	genotype_quality=921.4	ks_quality_p_value=0.999196	log10_base_likelihood=-65.3418	log10_qual_likelihood_position_model=12.2832	log10_strand_likelihood_position_model=0.795016	new_cov=13/14	polymorphism_quality=60.3	quality=60.3	quality_position_model=1.21239e-54	ref_cov=119/127	tot_cov=132/141
RA	985	.	NC_007779	13291	0	G	C	bias_e_value=4416550	bias_p_value=0.950546	fisher_strand_p_value=0.703159	frequency=1.165061e-01	genotype_quality=943.0	ks_quality_p_value=0.999009	log10_base_likelihood=-98.5833	log10_qual_likelihood_position_model=8.24567	log10_strand_likelihood_position_model=0.879199	new_cov=14/17	polymorphism_quality=93.6	quality=93.6	quality_position_model=5.9267e-92	ref_cov=118/117	tot_cov=132/134
RA	986	.	NC_007779	13293	0	T	G	bias_e_value=4320390	bias_p_value=0.929849	fisher_strand_p_value=0.705251	frequency=1.076498e-01	genotype_quality=913.8	ks_quality_p_value=0.921132	log10_base_likelihood=-108.089	log10_qual_likelihood_position_model=11.5962	log10_strand_likelihood_position_model=0.87252	new_cov=14/17	polymorphism_quality=103.2	quality=103.2	quality_position_model=3.94928e-98	ref_cov=128/129	tot_cov=142/146
RA	987	.	NC_007779	13298	0	G	C	bias_e_value=4418990	bias_p_value=0.95107	fisher_strand_p_value=0.704595	frequency=1.121912e-01	genotype_quality=986.9	ks_quality_p_value=0.999084	log10_base_likelihood=-91.7488	log10_qual_likelihood_position_model=11.4771	log10_strand_likelihood_position_model=0.870903	new_cov=14/17	polymorphism_quality=86.8	quality=86.8	quality_position_model=7.18119e-82	ref_cov=122/123	tot_cov=136/140
RA	988	.	NC_007779	13299	0	T	C	bias_e_value=568500	bias_p_value=0.122355	fisher_strand_p_value=0.706685	frequency=1.121693e-01	genotype_quality=768.3	ks_quality_p_value=0.0373602	log10_base_likelihood=-83.4022	log10_qual_likelihood_position_model=9.85625	log10_strand_likelihood_position_model=0.85809	new_cov=14/17	polymorphism_quality=78.4	quality=78.4	quality_position_model=3.87452e-75	ref_cov=120/124	tot_cov=138/141
RA	989	.	NC_007779	13302	0	T	C	bias_e_value=4136280	bias_p_value=0.890225	fisher_strand_p_value=0.704595	frequency=1.107464e-01	genotype_quality=805.4	ks_quality_p_value=0.808514	log10_base_likelihood=-76.2044	log10_qual_likelihood_position_model=11.0368	log10_strand_likelihood_position_model=0.870903	new_cov=14/17	polymorphism_quality=71.2	quality=71.2	quality_position_model=1.01368e-66	ref_cov=122/123	tot_cov=137/140
RA	990	.	NC_007779	13309	0	A	C	bias_e_value=4589060	bias_p_value=0.987675	fisher_strand_p_value=0.853081	frequency=1.052222e-01	genotype_quality=963.0	ks_quality_p_value=0.993058	log10_base_likelihood=-106.701	log10_qual_likelihood_position_model=10.4359	log10_strand_likelihood_position_model=0.843341	new_cov=15/17	polymorphism_quality=101.8	quality=101.8	quality_position_model=6.24564e-98	ref_cov=134/138	tot_cov=149/155
RA	991	.	NC_007779	13310	0	C	G	bias_e_value=4646310	bias_p_value=0.999995	fisher_strand_p_value=1	frequency=1.066093e-01	genotype_quality=1086.3	ks_quality_p_value=0.996821	log10_base_likelihood=-95.2633	log10_qual_likelihood_position_model=12.5514	log10_strand_likelihood_position_model=0.835422	new_cov=15/17	polymorphism_quality=90.3	quality=90.3	quality_position_model=2.36519e-84	ref_cov=130/138	tot_cov=145/155
RA	992	.	NC_007779	13311	0	T	C	bias_e_value=4588970	bias_p_value=0.987654	fisher_strand_p_value=0.853038	frequency=1.057940e-01	genotype_quality=956.2	ks_quality_p_value=0.992961	log10_base_likelihood=-81.9119	log10_qual_likelihood_position_model=15.5204	log10_strand_likelihood_position_model=0.843097	new_cov=15/17	polymorphism_quality=76.9	quality=76.9	quality_position_model=5.62268e-68	ref_cov=133/137	tot_cov=148/154
RA	993	.	NC_007779	13317	0	C	G	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=1.087456e-01	genotype_quality=1081.2	ks_quality_p_value=1	log10_base_likelihood=-98.5404	log10_qual_likelihood_position_model=10.2643	log10_strand_likelihood_position_model=0.835419	new_cov=16/17	polymorphism_quality=93.6	quality=93.6	quality_position_model=6.24396e-90	ref_cov=131/139	tot_cov=147/156
RA	994	.	NC_007779	13320	0	A	C	bias_e_value=4646200	bias_p_value=0.999971	fisher_strand_p_value=1	frequency=1.114244e-01	genotype_quality=939.5	ks_quality_p_value=0.992399	log10_base_likelihood=-109.96	log10_qual_likelihood_position_model=13.3516	log10_strand_likelihood_position_model=0.834881	new_cov=16/17	polymorphism_quality=105.0	quality=105.0	quality_position_model=2.77292e-98	ref_cov=128/135	tot_cov=144/152
RA	995	.	NC_007779	13323	0	A	G	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=1.112909e-01	genotype_quality=923.3	ks_quality_p_value=0.999153	log10_base_likelihood=-89.2229	log10_qual_likelihood_position_model=9.68598	log10_strand_likelihood_position_model=0.834881	new_cov=16/17	polymorphism_quality=84.3	quality=84.3	quality_position_model=3.60478e-81	ref_cov=128/135	tot_cov=144/152
RA	996	.	NC_007779	13329	0	A	G	bias_e_value=3130640	bias_p_value=0.673787	fisher_strand_p_value=0.486354	frequency=1.229753e-01	genotype_quality=867.9	ks_quality_p_value=0.638661	log10_base_likelihood=-98.8235	log10_qual_likelihood_position_model=13.5434	log10_strand_likelihood_position_model=0.974942	new_cov=20/17	polymorphism_quality=93.9	quality=93.9	quality_position_model=8.68673e-87	ref_cov=125/138	tot_cov=145/155
RA	997	.	NC_007779	13338	0	G	C	bias_e_value=3373080	bias_p_value=0.725967	fisher_strand_p_value=0.482789	frequency=1.375003e-01	genotype_quality=899.1	ks_quality_p_value=0.741971	log10_base_likelihood=-118.986	log10_qual_likelihood_position_model=11.5461	log10_strand_likelihood_position_model=0.973604	new_cov=20/17	polymorphism_quality=114.1	quality=114.1	quality_position_model=5.33782e-109	ref_cov=110/122	tot_cov=130/139
RA	998	.	NC_007779	13356	0	T	G	bias_e_value=3503840	bias_p_value=0.754109	fisher_strand_p_value=0.447414	frequency=1.091781e-01	genotype_quality=895.3	ks_quality_p_value=0.864307	log10_base_likelihood=-109.43	log10_qual_likelihood_position_model=8.33018	log10_strand_likelihood_position_model=0.997124	new_cov=18/13	polymorphism_quality=104.5	quality=104.5	quality_position_model=1.27129e-102	ref_cov=125/128	tot_cov=143/141
RA	999	.	NC_007779	13365	0	C	T	bias_e_value=4117230	bias_p_value=0.886124	fisher_strand_p_value=0.672112	frequency=8.619595e-02	genotype_quality=969.9	ks_quality_p_value=0.836867	log10_base_likelihood=-57.8937	log10_qual_likelihood_position_model=10.2376	log10_strand_likelihood_position_model=0.830175	new_cov=13/11	polymorphism_quality=52.8	quality=52.8	quality_position_model=3.50666e-49	ref_cov=123/130	tot_cov=137/141
RA	1000	.	NC_007779	13368	0	A	G	bias_e_value=4547330	bias_p_value=0.978692	fisher_strand_p_value=0.820682	frequency=8.099556e-02	genotype_quality=865.7	ks_quality_p_value=0.97577	log10_base_likelihood=-54.7528	log10_qual_likelihood_position_model=7.34901	log10_strand_likelihood_position_model=0.7791	new_cov=11/10	polymorphism_quality=49.7	quality=49.7	quality_position_model=5.58606e-49	ref_cov=114/124	tot_cov=125/134
RA	1001	.	NC_007779	13373	0	T	A	bias_e_value=4290240	bias_p_value=0.923361	fisher_strand_p_value=0.649103	frequency=7.512093e-02	genotype_quality=985.1	ks_quality_p_value=0.978234	log10_base_likelihood=-57.6183	log10_qual_likelihood_position_model=7.34003	log10_strand_likelihood_position_model=0.789268	new_cov=11/9	polymorphism_quality=52.6	quality=52.6	quality_position_model=7.41242e-52	ref_cov=121/125	tot_cov=132/134
RA	1002	.	NC_007779	13383	0	G	C	bias_e_value=3724830	bias_p_value=0.801672	fisher_strand_p_value=0.784373	frequency=5.853128e-02	genotype_quality=916.3	ks_quality_p_value=0.561642	log10_base_likelihood=-38.592	log10_qual_likelihood_position_model=9.72953	log10_strand_likelihood_position_model=0.716603	new_cov=8/6	polymorphism_quality=33.4	quality=33.4	quality_position_model=2.15891e-30	ref_cov=113/112	tot_cov=121/118
RA	1003	.	NC_007779	13389	0	G	C	bias_e_value=3910720	bias_p_value=0.84168	fisher_strand_p_value=0.592071	frequency=5.953789e-02	genotype_quality=921.8	ks_quality_p_value=0.832687	log10_base_likelihood=-41.2039	log10_qual_likelihood_position_model=5.25004	log10_strand_likelihood_position_model=0.73973	new_cov=8/6	polymorphism_quality=36.1	quality=36.1	quality_position_model=1.65188e-37	ref_cov=108/113	tot_cov=116/119
RA	1004	.	NC_007779	13391	0	C	A	bias_e_value=3171960	bias_p_value=0.68268	fisher_strand_p_value=0.592071	frequency=5.950260e-02	genotype_quality=916.6	ks_quality_p_value=0.537608	log10_base_likelihood=-34.9844	log10_qual_likelihood_position_model=4.47788	log10_strand_likelihood_position_model=0.73973	new_cov=8/6	polymorphism_quality=29.8	quality=29.8	quality_position_model=5.02734e-32	ref_cov=108/113	tot_cov=116/119
RA	1005	.	NC_007779	13400	0	C	A	bias_e_value=4255280	bias_p_value=0.915836	fisher_strand_p_value=0.78817	frequency=6.077719e-02	genotype_quality=894.9	ks_quality_p_value=0.785187	log10_base_likelihood=-34.9336	log10_qual_likelihood_position_model=5.8155	log10_strand_likelihood_position_model=0.687936	new_cov=8/6	polymorphism_quality=29.8	quality=29.8	quality_position_model=1.11634e-30	ref_cov=113/103	tot_cov=121/109
RA	1006	.	NC_007779	13402	0	A	C	bias_e_value=4220800	bias_p_value=0.908414	fisher_strand_p_value=1	frequency=6.111622e-02	genotype_quality=821.7	ks_quality_p_value=0.60378	log10_base_likelihood=-45.8244	log10_qual_likelihood_position_model=4.58353	log10_strand_likelihood_position_model=0.676475	new_cov=8/6	polymorphism_quality=40.7	quality=40.7	quality_position_model=6.87601e-43	ref_cov=115/100	tot_cov=123/106
RA	1007	.	NC_007779	13403	0	A	G	bias_e_value=4559630	bias_p_value=0.98134	fisher_strand_p_value=1	frequency=6.103992e-02	genotype_quality=801.8	ks_quality_p_value=0.813144	log10_base_likelihood=-35.1575	log10_qual_likelihood_position_model=5.58035	log10_strand_likelihood_position_model=0.676475	new_cov=8/6	polymorphism_quality=30.0	quality=30.0	quality_position_model=3.74776e-31	ref_cov=115/100	tot_cov=123/106
RA	1008	.	NC_007779	13404	0	A	C	bias_e_value=4070770	bias_p_value=0.876125	fisher_strand_p_value=1	frequency=6.114578e-02	genotype_quality=810.9	ks_quality_p_value=0.545538	log10_base_likelihood=-46.1706	log10_qual_likelihood_position_model=5.95551	log10_strand_likelihood_position_model=0.676475	new_cov=8/6	polymorphism_quality=41.1	quality=41.1	quality_position_model=7.38965e-42	ref_cov=115/100	tot_cov=123/106
RA	1009	.	NC_007779	15382	0	A	G	bias_e_value=3.24142e-06	bias_p_value=6.97631e-13	fisher_strand_p_value=2.14844e-14	frequency=1.022491e-01	genotype_quality=541.0	ks_quality_p_value=1	log10_base_likelihood=-13.5499	log10_qual_likelihood_position_model=20.7425	log10_strand_likelihood_position_model=13.6679	new_cov=23/0	polymorphism_quality=8.2	quality=8.2	quality_position_model=Inf	ref_cov=32/127	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=55/127
RA	1010	.	NC_007779	17050	0	A	C	bias_e_value=2.59466e-07	bias_p_value=5.58433e-14	fisher_strand_p_value=1.59217e-15	frequency=1.867089e-01	genotype_quality=243.5	ks_quality_p_value=1	log10_base_likelihood=-10.3384	log10_qual_likelihood_position_model=20.8565	log10_strand_likelihood_position_model=14.798	new_cov=0/28	polymorphism_quality=4.9	quality=4.9	quality_position_model=Inf	ref_cov=64/14	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=64/42
RA	1011	.	NC_007779	29486	0	C	A	bias_e_value=130.233	bias_p_value=2.80291e-05	fisher_strand_p_value=1.98358e-06	frequency=6.116486e-02	genotype_quality=607.0	ks_quality_p_value=1	log10_base_likelihood=-8.70091	log10_qual_likelihood_position_model=11.6398	log10_strand_likelihood_position_model=5.70255	new_cov=0/12	polymorphism_quality=3.2	quality=3.2	quality_position_model=Inf	ref_cov=106/47	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=106/59
RA	1012	.	NC_007779	29496	0	T	A	bias_e_value=0.00779368	bias_p_value=1.67738e-09	fisher_strand_p_value=6.87434e-11	frequency=1.136727e-01	genotype_quality=585.4	ks_quality_p_value=1	log10_base_likelihood=-19.7084	log10_qual_likelihood_position_model=26.6194	log10_strand_likelihood_position_model=10.1628	new_cov=0/22	polymorphism_quality=14.4	quality=14.4	quality_position_model=Inf	ref_cov=112/48	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=112/70
RA	1013	.	NC_007779	29503	0	T	C	bias_e_value=0.000531761	bias_p_value=1.14448e-10	fisher_strand_p_value=4.20858e-12	frequency=9.933949e-02	genotype_quality=568.1	ks_quality_p_value=1	log10_base_likelihood=-11.1588	log10_qual_likelihood_position_model=21.8517	log10_strand_likelihood_position_model=11.3759	new_cov=0/27	polymorphism_quality=5.7	quality=5.7	quality_position_model=Inf	ref_cov=117/58	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=117/85
RA	1014	.	NC_007779	30930	0	T	C	bias_e_value=3598520	bias_p_value=0.774486	fisher_strand_p_value=0.425822	frequency=2.627373e-02	genotype_quality=818.3	ks_quality_p_value=0.960032	log10_base_likelihood=-9.79599	log10_qual_likelihood_position_model=5.81789	log10_strand_likelihood_position_model=0.679157	new_cov=2/4	polymorphism_quality=4.4	quality=4.4	quality_position_model=4.21736e-05	ref_cov=117/103	tot_cov=119/107
RA	1015	.	NC_007779	30939	0	T	C	bias_e_value=3707630	bias_p_value=0.79797	fisher_strand_p_value=0.437752	frequency=2.566910e-02	genotype_quality=795.5	ks_quality_p_value=0.996111	log10_base_likelihood=-8.36713	log10_qual_likelihood_position_model=6.16818	log10_strand_likelihood_position_model=0.648583	new_cov=2/4	polymorphism_quality=2.9	quality=2.9	quality_position_model=0.00328682	ref_cov=113/106	tot_cov=115/110
RA	1016	.	NC_007779	30940	0	T	C	bias_e_value=3655060	bias_p_value=0.786655	fisher_strand_p_value=0.437752	frequency=2.629089e-02	genotype_quality=806.6	ks_quality_p_value=0.965539	log10_base_likelihood=-9.05369	log10_qual_likelihood_position_model=5.12228	log10_strand_likelihood_position_model=0.648583	new_cov=2/4	polymorphism_quality=3.6	quality=3.6	quality_position_model=4.38646e-05	ref_cov=113/106	tot_cov=115/110
RA	1017	.	NC_007779	30941	0	A	T	bias_e_value=3722210	bias_p_value=0.801108	fisher_strand_p_value=0.43985	frequency=2.465439e-02	genotype_quality=839.4	ks_quality_p_value=1	log10_base_likelihood=-10.4857	log10_qual_likelihood_position_model=5.55958	log10_strand_likelihood_position_model=0.644197	new_cov=2/4	polymorphism_quality=5.1	quality=5.1	quality_position_model=3.89594e-06	ref_cov=114/108	tot_cov=116/112
RA	1018	.	NC_007779	30942	0	C	G	bias_e_value=4341980	bias_p_value=0.934496	fisher_strand_p_value=0.683352	frequency=2.612877e-02	genotype_quality=925.3	ks_quality_p_value=0.966728	log10_base_likelihood=-13.1562	log10_qual_likelihood_position_model=5.50799	log10_strand_likelihood_position_model=0.624361	new_cov=2/4	polymorphism_quality=7.8	quality=7.8	quality_position_model=5.60333e-09	ref_cov=112/111	tot_cov=114/115
RA	1019	.	NC_007779	30945	0	C	A	bias_e_value=4255910	bias_p_value=0.915972	fisher_strand_p_value=0.683705	frequency=2.683449e-02	genotype_quality=878.2	ks_quality_p_value=0.905569	log10_base_likelihood=-13.7024	log10_qual_likelihood_position_model=6.18142	log10_strand_likelihood_position_model=0.608908	new_cov=2/4	polymorphism_quality=8.3	quality=8.3	quality_position_model=7.30321e-09	ref_cov=107/110	tot_cov=109/114
RA	1020	.	NC_007779	30950	0	T	C	bias_e_value=4152290	bias_p_value=0.893671	fisher_strand_p_value=0.684504	frequency=2.620411e-02	genotype_quality=859.4	ks_quality_p_value=0.84128	log10_base_likelihood=-11.8264	log10_qual_likelihood_position_model=4.27352	log10_strand_likelihood_position_model=0.59867	new_cov=2/4	polymorphism_quality=6.4	quality=6.4	quality_position_model=6.60887e-09	ref_cov=108/114	tot_cov=110/118
RA	1021	.	NC_007779	30951	0	T	G	bias_e_value=3604160	bias_p_value=0.775701	fisher_strand_p_value=0.448443	frequency=3.055382e-02	genotype_quality=862.6	ks_quality_p_value=0.91464	log10_base_likelihood=-19.4183	log10_qual_likelihood_position_model=5.51955	log10_strand_likelihood_position_model=0.736831	new_cov=2/5	polymorphism_quality=14.1	quality=14.1	quality_position_model=3.01739e-15	ref_cov=108/114	tot_cov=110/119
RA	1022	.	NC_007779	30957	0	G	T	bias_e_value=3756940	bias_p_value=0.808581	fisher_strand_p_value=0.449066	frequency=2.721024e-02	genotype_quality=913.6	ks_quality_p_value=1	log10_base_likelihood=-11.9753	log10_qual_likelihood_position_model=4.58676	log10_strand_likelihood_position_model=0.732216	new_cov=2/5	polymorphism_quality=6.6	quality=6.6	quality_position_model=1.33965e-08	ref_cov=109/116	tot_cov=111/121
RA	1023	.	NC_007779	30963	0	C	T	bias_e_value=3780880	bias_p_value=0.813734	fisher_strand_p_value=0.456049	frequency=2.881145e-02	genotype_quality=884.4	ks_quality_p_value=0.998928	log10_base_likelihood=-11.2954	log10_qual_likelihood_position_model=6.11958	log10_strand_likelihood_position_model=0.692441	new_cov=2/5	polymorphism_quality=5.9	quality=5.9	quality_position_model=2.39868e-06	ref_cov=105/120	tot_cov=107/125
RA	1024	.	NC_007779	30972	0	G	A	bias_e_value=4383780	bias_p_value=0.943492	fisher_strand_p_value=0.686031	frequency=2.592564e-02	genotype_quality=848.2	ks_quality_p_value=0.99593	log10_base_likelihood=-7.32088	log10_qual_likelihood_position_model=7.74574	log10_strand_likelihood_position_model=0.583574	new_cov=2/4	polymorphism_quality=1.8	quality=1.8	quality_position_model=Inf	ref_cov=102/112	reject=EVALUE	tot_cov=104/116
RA	1025	.	NC_007779	30975	0	C	G	bias_e_value=4367080	bias_p_value=0.939897	fisher_strand_p_value=0.685586	frequency=2.767754e-02	genotype_quality=864.5	ks_quality_p_value=0.983054	log10_base_likelihood=-10.9702	log10_qual_likelihood_position_model=6.23921	log10_strand_likelihood_position_model=0.586045	new_cov=2/4	polymorphism_quality=5.6	quality=5.6	quality_position_model=5.42071e-06	ref_cov=100/109	tot_cov=102/113
RA	1026	.	NC_007779	30978	0	C	T	bias_e_value=4388740	bias_p_value=0.94456	fisher_strand_p_value=0.686058	frequency=2.549362e-02	genotype_quality=843.0	ks_quality_p_value=1	log10_base_likelihood=-7.9962	log10_qual_likelihood_position_model=7.1477	log10_strand_likelihood_position_model=0.582767	new_cov=2/4	polymorphism_quality=2.5	quality=2.5	quality_position_model=0.135858	ref_cov=100/110	tot_cov=102/114
RA	1027	.	NC_007779	30984	0	C	T	bias_e_value=4375210	bias_p_value=0.941649	fisher_strand_p_value=0.683167	frequency=2.798843e-02	genotype_quality=821.1	ks_quality_p_value=0.993088	log10_base_likelihood=-9.43881	log10_qual_likelihood_position_model=5.76852	log10_strand_likelihood_position_model=0.615675	new_cov=2/4	polymorphism_quality=4.0	quality=4.0	quality_position_model=7.66206e-05	ref_cov=102/103	tot_cov=104/107
RA	1028	.	NC_007779	30993	0	A	G	bias_e_value=4335090	bias_p_value=0.933013	fisher_strand_p_value=0.683465	frequency=2.610970e-02	genotype_quality=844.2	ks_quality_p_value=0.961371	log10_base_likelihood=-10.8969	log10_qual_likelihood_position_model=6.17948	log10_strand_likelihood_position_model=0.616691	new_cov=2/4	polymorphism_quality=5.5	quality=5.5	quality_position_model=6.03124e-06	ref_cov=110/111	tot_cov=112/115
RA	1029	.	NC_007779	30994	0	A	T	bias_e_value=4266730	bias_p_value=0.918302	fisher_strand_p_value=0.683465	frequency=2.371693e-02	genotype_quality=862.9	ks_quality_p_value=0.913058	log10_base_likelihood=-10.381	log10_qual_likelihood_position_model=6.48947	log10_strand_likelihood_position_model=0.616691	new_cov=2/4	polymorphism_quality=5.0	quality=5.0	quality_position_model=4.47276e-05	ref_cov=110/111	tot_cov=112/115
RA	1030	.	NC_007779	30996	0	G	C	bias_e_value=4377390	bias_p_value=0.942118	fisher_strand_p_value=0.683465	frequency=2.601051e-02	genotype_quality=924.9	ks_quality_p_value=0.994428	log10_base_likelihood=-12.2134	log10_qual_likelihood_position_model=5.51706	log10_strand_likelihood_position_model=0.616691	new_cov=2/4	polymorphism_quality=6.8	quality=6.8	quality_position_model=5.27464e-08	ref_cov=110/111	tot_cov=112/115
RA	1031	.	NC_007779	30999	0	T	A	bias_e_value=4281840	bias_p_value=0.921553	fisher_strand_p_value=0.683316	frequency=2.667427e-02	genotype_quality=851.9	ks_quality_p_value=0.923467	log10_base_likelihood=-12.0449	log10_qual_likelihood_position_model=6.89218	log10_strand_likelihood_position_model=0.620346	new_cov=2/4	polymorphism_quality=6.6	quality=6.6	quality_position_model=2.13208e-06	ref_cov=109/109	tot_cov=111/113
RA	1032	.	NC_007779	31002	0	T	C	bias_e_value=2610110	bias_p_value=0.561756	fisher_strand_p_value=0.4458	frequency=2.605820e-02	genotype_quality=823.3	ks_quality_p_value=0.506417	log10_base_likelihood=-11.3461	log10_qual_likelihood_position_model=5.39212	log10_strand_likelihood_position_model=0.632136	new_cov=2/4	polymorphism_quality=5.9	quality=5.9	quality_position_model=3.2139e-07	ref_cov=112/109	tot_cov=114/113
RA	1033	.	NC_007779	31003	0	G	T	bias_e_value=3539150	bias_p_value=0.761708	fisher_strand_p_value=0.443708	frequency=2.642345e-02	genotype_quality=881.3	ks_quality_p_value=0.889751	log10_base_likelihood=-11.0232	log10_qual_likelihood_position_model=5.60386	log10_strand_likelihood_position_model=0.636154	new_cov=2/4	polymorphism_quality=5.6	quality=5.6	quality_position_model=1.16733e-06	ref_cov=112/108	tot_cov=114/112
RA	1034	.	NC_007779	31005	0	A	C	bias_e_value=3500400	bias_p_value=0.753369	fisher_strand_p_value=0.431837	frequency=2.725983e-02	genotype_quality=816.4	ks_quality_p_value=0.893683	log10_base_likelihood=-17.0029	log10_qual_likelihood_position_model=3.96867	log10_strand_likelihood_position_model=0.662235	new_cov=2/4	polymorphism_quality=11.7	quality=11.7	quality_position_model=1.9168e-14	ref_cov=112/102	tot_cov=114/106
RA	1035	.	NC_007779	34111	1	.	T	bias_e_value=199972	bias_p_value=0.0430388	fisher_strand_p_value=0.124554	frequency=1.769924e-02	genotype_quality=1084.0	ks_quality_p_value=0.0583215	log10_base_likelihood=-17.4457	log10_qual_likelihood_position_model=3.09175	log10_strand_likelihood_position_model=1.11005	new_cov=4/0	polymorphism_quality=12.1	quality=12.1	quality_position_model=2.49083e-15	ref_cov=116/106	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=120/106
RA	1036	.	NC_007779	38106	0	C	G	bias_e_value=0.151003	bias_p_value=3.24994e-08	fisher_strand_p_value=1.52574e-09	frequency=8.698463e-02	genotype_quality=568.7	ks_quality_p_value=1	log10_base_likelihood=-11.5541	log10_qual_likelihood_position_model=18.3639	log10_strand_likelihood_position_model=8.81652	new_cov=0/17	polymorphism_quality=6.1	quality=6.1	quality_position_model=Inf	ref_cov=112/40	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=112/57
RA	1037	.	NC_007779	39910	0	G	T	bias_e_value=26633.8	bias_p_value=0.00573223	fisher_strand_p_value=0.000692727	frequency=8.360720e-02	genotype_quality=544.8	ks_quality_p_value=1	log10_base_likelihood=-10.2807	log10_qual_likelihood_position_model=15.0299	log10_strand_likelihood_position_model=3.24391	new_cov=0/21	polymorphism_quality=4.9	quality=4.9	quality_position_model=Inf	ref_cov=55/118	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=55/139
RA	1038	.	NC_007779	47305	0	G	T	bias_e_value=0.833361	bias_p_value=1.79359e-07	fisher_strand_p_value=9.19576e-09	frequency=7.580853e-02	genotype_quality=661.8	ks_quality_p_value=1	log10_base_likelihood=-7.68406	log10_qual_likelihood_position_model=18.7948	log10_strand_likelihood_position_model=8.03641	new_cov=0/22	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=111/73	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=111/96
RA	1039	.	NC_007779	48338	0	T	G	bias_e_value=245.151	bias_p_value=5.27622e-05	fisher_strand_p_value=3.95452e-06	frequency=4.542160e-02	genotype_quality=369.6	ks_quality_p_value=0.992092	log10_base_likelihood=-9.06394	log10_qual_likelihood_position_model=6.51125	log10_strand_likelihood_position_model=5.40291	new_cov=5/0	polymorphism_quality=3.6	quality=3.6	quality_position_model=Inf	ref_cov=6/98	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=11/98
RA	1040	.	NC_007779	50358	0	G	T	bias_e_value=25.3204	bias_p_value=5.44955e-06	fisher_strand_p_value=3.43054e-07	frequency=6.769657e-02	genotype_quality=660.7	ks_quality_p_value=1	log10_base_likelihood=-8.24165	log10_qual_likelihood_position_model=15.6169	log10_strand_likelihood_position_model=6.64825	new_cov=0/21	polymorphism_quality=2.8	quality=2.8	quality_position_model=Inf	ref_cov=107/89	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=107/110
RA	1041	.	NC_007779	57100	1	.	T	bias_e_value=3183280	bias_p_value=0.685117	fisher_strand_p_value=0.372504	frequency=2.463055e-02	genotype_quality=948.3	ks_quality_p_value=0.860226	log10_base_likelihood=-22.3251	log10_qual_likelihood_position_model=3.92453	log10_strand_likelihood_position_model=0.741773	new_cov=4/1	polymorphism_quality=17.1	quality=17.1	quality_position_model=8.32989e-20	ref_cov=103/95	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=107/96
RA	1042	.	NC_007779	61542	0	C	G	bias_e_value=0.0928326	bias_p_value=1.99798e-08	fisher_strand_p_value=9.16042e-10	frequency=9.547138e-02	genotype_quality=434.4	ks_quality_p_value=1	log10_base_likelihood=-16.9332	log10_qual_likelihood_position_model=12.3486	log10_strand_likelihood_position_model=9.03808	new_cov=12/0	polymorphism_quality=11.6	quality=11.6	quality_position_model=Inf	ref_cov=14/94	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=26/94
RA	1043	.	NC_007779	63419	0	T	.	bias_e_value=4020660	bias_p_value=0.86534	fisher_strand_p_value=0.585177	frequency=1.320744e-02	genotype_quality=899.3	ks_quality_p_value=0.902634	log10_base_likelihood=-8.29055	log10_qual_likelihood_position_model=1.31114	log10_strand_likelihood_position_model=0.483412	new_cov=2/1	polymorphism_quality=2.8	quality=2.8	quality_position_model=1.96025e-08	ref_cov=98/125	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=100/127
RA	1044	.	NC_007779	65299	1	.	G	bias_e_value=2346600	bias_p_value=0.505043	fisher_strand_p_value=0.208803	frequency=8.810043e-03	genotype_quality=1121.4	ks_quality_p_value=0.908521	log10_base_likelihood=-7.72843	log10_qual_likelihood_position_model=0.836117	log10_strand_likelihood_position_model=0.680264	new_cov=2/0	polymorphism_quality=2.2	quality=2.2	quality_position_model=3.84942e-08	ref_cov=102/123	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=104/123
RA	1045	.	NC_007779	66457	0	C	A	frequency=1	genotype_quality=1000.1	new_cov=139/110	quality=1000.1	ref_cov=0/1	tot_cov=139/111
RA	1046	.	NC_007779	70602	0	G	T	bias_e_value=0.00035052	bias_p_value=7.54402e-11	fisher_strand_p_value=2.73072e-12	frequency=1.211290e-01	genotype_quality=683.7	ks_quality_p_value=1	log10_base_likelihood=-20.9476	log10_qual_likelihood_position_model=23.3139	log10_strand_likelihood_position_model=11.5637	new_cov=0/34	polymorphism_quality=15.7	quality=15.7	quality_position_model=Inf	ref_cov=115/80	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=115/114
RA	1047	.	NC_007779	75074	0	T	G	bias_e_value=1.06859e-25	bias_p_value=2.29986e-32	fisher_strand_p_value=2.94064e-34	frequency=2.410636e-01	genotype_quality=411.1	ks_quality_p_value=1	log10_base_likelihood=-55.0104	log10_qual_likelihood_position_model=45.0656	log10_strand_likelihood_position_model=33.5316	new_cov=55/0	polymorphism_quality=49.9	quality=49.9	quality_position_model=Inf	ref_cov=16/123	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=72/125
RA	1048	.	NC_007779	75079	0	C	T	bias_e_value=80.1172	bias_p_value=1.72431e-05	fisher_strand_p_value=1.17679e-06	frequency=3.879356e-02	genotype_quality=563.3	ks_quality_p_value=1	log10_base_likelihood=-5.88128	log10_qual_likelihood_position_model=8.5265	log10_strand_likelihood_position_model=5.9293	new_cov=7/0	polymorphism_quality=0.3	quality=0.3	quality_position_model=Inf	ref_cov=17/126	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=24/126
RA	1049	.	NC_007779	80397	0	T	C	bias_e_value=4594160	bias_p_value=0.988772	fisher_strand_p_value=1	frequency=5.254126e-02	genotype_quality=783.2	ks_quality_p_value=0.85394	log10_base_likelihood=-28.1048	log10_qual_likelihood_position_model=6.08732	log10_strand_likelihood_position_model=0.639891	new_cov=7/5	polymorphism_quality=22.9	quality=22.9	quality_position_model=1.44954e-23	ref_cov=119/97	tot_cov=126/102
RA	1050	.	NC_007779	80400	0	C	G	bias_e_value=4364940	bias_p_value=0.939437	fisher_strand_p_value=1	frequency=5.093718e-02	genotype_quality=912.6	ks_quality_p_value=0.672804	log10_base_likelihood=-33.6216	log10_qual_likelihood_position_model=6.07164	log10_strand_likelihood_position_model=0.634921	new_cov=7/5	polymorphism_quality=28.4	quality=28.4	quality_position_model=3.75518e-29	ref_cov=125/98	reject=SURROUNDING_HOMOPOLYMER	tot_cov=133/103
RA	1051	.	NC_007779	80403	0	T	A	bias_e_value=3799310	bias_p_value=0.817702	fisher_strand_p_value=1	frequency=5.059671e-02	genotype_quality=889.1	ks_quality_p_value=0.460642	log10_base_likelihood=-34.4673	log10_qual_likelihood_position_model=7.01818	log10_strand_likelihood_position_model=0.633369	new_cov=7/5	polymorphism_quality=29.3	quality=29.3	quality_position_model=4.72828e-29	ref_cov=127/98	tot_cov=134/103
RA	1052	.	NC_007779	80409	0	T	A	bias_e_value=2513470	bias_p_value=0.540957	fisher_strand_p_value=0.653457	frequency=8.798695e-02	genotype_quality=870.6	ks_quality_p_value=0.324536	log10_base_likelihood=-68.5493	log10_qual_likelihood_position_model=10.0878	log10_strand_likelihood_position_model=0.840119	new_cov=11/11	polymorphism_quality=63.5	quality=63.5	quality_position_model=5.06772e-60	ref_cov=130/98	tot_cov=141/109
RA	1053	.	NC_007779	80415	0	T	C	bias_e_value=2154490	bias_p_value=0.463697	fisher_strand_p_value=0.836646	frequency=1.065116e-01	genotype_quality=736.2	ks_quality_p_value=0.198145	log10_base_likelihood=-73.9608	log10_qual_likelihood_position_model=9.67626	log10_strand_likelihood_position_model=0.800235	new_cov=15/11	polymorphism_quality=69.0	quality=69.0	quality_position_model=6.62203e-66	ref_cov=119/99	tot_cov=134/110
RA	1054	.	NC_007779	80430	0	G	A	bias_e_value=3388570	bias_p_value=0.7293	fisher_strand_p_value=0.679353	frequency=1.047106e-01	genotype_quality=798.5	ks_quality_p_value=0.532089	log10_base_likelihood=-66.838	log10_qual_likelihood_position_model=9.72135	log10_strand_likelihood_position_model=0.851524	new_cov=15/11	polymorphism_quality=61.8	quality=61.8	quality_position_model=1.16466e-58	ref_cov=115/107	tot_cov=130/118
RA	1055	.	NC_007779	80447	0	G	T	bias_e_value=504270	bias_p_value=0.108531	fisher_strand_p_value=1	frequency=1.086259e-01	genotype_quality=883.9	ks_quality_p_value=0.0226742	log10_base_likelihood=-71.1533	log10_qual_likelihood_position_model=10.7517	log10_strand_likelihood_position_model=0.790697	new_cov=15/11	polymorphism_quality=66.1	quality=66.1	quality_position_model=5.10508e-62	ref_cov=118/95	tot_cov=133/106
RA	1056	.	NC_007779	80448	0	T	C	bias_e_value=310790	bias_p_value=0.0668892	fisher_strand_p_value=0.837284	frequency=1.128631e-01	genotype_quality=695.5	ks_quality_p_value=0.0148241	log10_base_likelihood=-74.2908	log10_qual_likelihood_position_model=9.76873	log10_strand_likelihood_position_model=0.793265	new_cov=15/11	polymorphism_quality=69.3	quality=69.3	quality_position_model=3.76409e-66	ref_cov=114/93	tot_cov=130/105
RA	1057	.	NC_007779	80454	0	A	G	bias_e_value=1760950	bias_p_value=0.378998	fisher_strand_p_value=0.83556	frequency=1.105690e-01	genotype_quality=718.2	ks_quality_p_value=0.146205	log10_base_likelihood=-73.7672	log10_qual_likelihood_position_model=7.81178	log10_strand_likelihood_position_model=0.806268	new_cov=15/11	polymorphism_quality=68.8	quality=68.8	quality_position_model=1.41436e-67	ref_cov=113/96	tot_cov=128/107
RA	1058	.	NC_007779	80457	0	C	A	bias_e_value=2402100	bias_p_value=0.516988	fisher_strand_p_value=0.835091	frequency=1.124535e-01	genotype_quality=857.8	ks_quality_p_value=0.235867	log10_base_likelihood=-70.9719	log10_qual_likelihood_position_model=7.81903	log10_strand_likelihood_position_model=0.812065	new_cov=15/11	polymorphism_quality=66.0	quality=66.0	quality_position_model=9.29846e-65	ref_cov=110/95	tot_cov=125/106
RA	1059	.	NC_007779	80460	0	G	A	bias_e_value=4346190	bias_p_value=0.935403	fisher_strand_p_value=0.681788	frequency=1.138310e-01	genotype_quality=723.2	ks_quality_p_value=0.972168	log10_base_likelihood=-62.6679	log10_qual_likelihood_position_model=12.2047	log10_strand_likelihood_position_model=0.823764	new_cov=15/11	polymorphism_quality=57.6	quality=57.6	quality_position_model=5.23427e-52	ref_cov=107/95	tot_cov=122/106
RA	1060	.	NC_007779	80466	0	G	C	bias_e_value=3370740	bias_p_value=0.725462	fisher_strand_p_value=0.834741	frequency=1.176124e-01	genotype_quality=772.4	ks_quality_p_value=0.428545	log10_base_likelihood=-84.1624	log10_qual_likelihood_position_model=6.66823	log10_strand_likelihood_position_model=0.807682	new_cov=15/11	polymorphism_quality=79.2	quality=79.2	quality_position_model=3.78472e-79	ref_cov=105/90	tot_cov=120/101
RA	1061	.	NC_007779	80469	0	G	T	bias_e_value=994758	bias_p_value=0.214095	fisher_strand_p_value=0.834741	frequency=1.177254e-01	genotype_quality=787.7	ks_quality_p_value=0.065712	log10_base_likelihood=-76.5661	log10_qual_likelihood_position_model=8.84796	log10_strand_likelihood_position_model=0.807682	new_cov=15/11	polymorphism_quality=71.6	quality=71.6	quality_position_model=2.41826e-69	ref_cov=105/90	tot_cov=120/101
RA	1062	.	NC_007779	80472	0	G	A	bias_e_value=3747200	bias_p_value=0.806485	fisher_strand_p_value=0.68076	frequency=1.097193e-01	genotype_quality=765.1	ks_quality_p_value=0.65582	log10_base_likelihood=-67.5006	log10_qual_likelihood_position_model=7.17581	log10_strand_likelihood_position_model=0.831423	new_cov=15/11	polymorphism_quality=62.5	quality=62.5	quality_position_model=6.6978e-62	ref_cov=110/99	tot_cov=125/110
RA	1063	.	NC_007779	80475	0	A	G	bias_e_value=24627.6	bias_p_value=0.00530045	fisher_strand_p_value=0.835164	frequency=1.110735e-01	genotype_quality=696.4	ks_quality_p_value=0.000758809	log10_base_likelihood=-74.6321	log10_qual_likelihood_position_model=9.71176	log10_strand_likelihood_position_model=0.817412	new_cov=15/11	polymorphism_quality=69.6	quality=69.6	quality_position_model=1.5859e-66	ref_cov=111/97	reject=KS_QUALITY_P_VALUE	tot_cov=126/108
RA	1064	.	NC_007779	80478	0	C	G	bias_e_value=4032920	bias_p_value=0.867979	fisher_strand_p_value=0.671558	frequency=1.091113e-01	genotype_quality=807.7	ks_quality_p_value=0.792724	log10_base_likelihood=-79.3021	log10_qual_likelihood_position_model=7.66083	log10_strand_likelihood_position_model=0.859822	new_cov=15/10	polymorphism_quality=74.3	quality=74.3	quality_position_model=3.16498e-73	ref_cov=109/96	reject=SURROUNDING_HOMOPOLYMER	tot_cov=124/107
RA	1065	.	NC_007779	80484	0	G	A	bias_e_value=956474	bias_p_value=0.205856	fisher_strand_p_value=0.348372	frequency=9.012270e-02	genotype_quality=738.2	ks_quality_p_value=0.14938	log10_base_likelihood=-48.6603	log10_qual_likelihood_position_model=10.3216	log10_strand_likelihood_position_model=0.997922	new_cov=13/7	polymorphism_quality=43.6	quality=43.6	quality_position_model=1.19879e-39	ref_cov=104/97	tot_cov=117/104
RA	1066	.	NC_007779	80487	0	G	A	bias_e_value=3239130	bias_p_value=0.697137	fisher_strand_p_value=0.348194	frequency=8.971405e-02	genotype_quality=764.6	ks_quality_p_value=0.951064	log10_base_likelihood=-49.4024	log10_qual_likelihood_position_model=6.62843	log10_strand_likelihood_position_model=1.00896	new_cov=13/7	polymorphism_quality=44.3	quality=44.3	quality_position_model=4.27027e-44	ref_cov=104/98	tot_cov=117/105
RA	1067	.	NC_007779	80495	0	T	C	bias_e_value=2209210	bias_p_value=0.475474	fisher_strand_p_value=0.789664	frequency=6.027937e-02	genotype_quality=810.3	ks_quality_p_value=0.218325	log10_base_likelihood=-35.2099	log10_qual_likelihood_position_model=8.83451	log10_strand_likelihood_position_model=0.683458	new_cov=8/6	polymorphism_quality=30.0	quality=30.0	quality_position_model=6.42201e-28	ref_cov=115/103	tot_cov=123/109
RA	1068	.	NC_007779	80499	0	C	G	bias_e_value=1693570	bias_p_value=0.364495	fisher_strand_p_value=0.121644	frequency=1.788235e-02	genotype_quality=892.2	ks_quality_p_value=0.948309	log10_base_likelihood=-8.8075	log10_qual_likelihood_position_model=2.61207	log10_strand_likelihood_position_model=1.20811	new_cov=4/0	polymorphism_quality=3.3	quality=3.3	quality_position_model=7.15574e-07	ref_cov=108/111	reject=POLYMORPHISM_STRAND	tot_cov=112/111
RA	1069	.	NC_007779	80500	0	A	G	bias_e_value=1700210	bias_p_value=0.365926	fisher_strand_p_value=0.121644	frequency=1.776218e-02	genotype_quality=837.5	ks_quality_p_value=0.953762	log10_base_likelihood=-6.59747	log10_qual_likelihood_position_model=3.58914	log10_strand_likelihood_position_model=1.20811	new_cov=4/0	polymorphism_quality=1.1	quality=1.1	quality_position_model=0.00173442	ref_cov=108/111	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=112/111
RA	1070	.	NC_007779	80502	0	C	G	bias_e_value=1729410	bias_p_value=0.37221	fisher_strand_p_value=0.12152	frequency=1.853466e-02	genotype_quality=875.1	ks_quality_p_value=0.978888	log10_base_likelihood=-8.3743	log10_qual_likelihood_position_model=3.56636	log10_strand_likelihood_position_model=1.20827	new_cov=4/0	polymorphism_quality=2.9	quality=2.9	quality_position_model=2.0287e-05	ref_cov=104/107	reject=POLYMORPHISM_STRAND	tot_cov=108/107
RA	1071	.	NC_007779	89555	0	G	T	bias_e_value=506.207	bias_p_value=0.000108948	fisher_strand_p_value=8.8778e-06	frequency=5.285072e-02	genotype_quality=723.6	ks_quality_p_value=0.969088	log10_base_likelihood=-5.91394	log10_qual_likelihood_position_model=17.4641	log10_strand_likelihood_position_model=5.05169	new_cov=15/0	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=92/117	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=107/117
RA	1072	.	NC_007779	89566	0	C	T	bias_e_value=515.287	bias_p_value=0.000110902	fisher_strand_p_value=8.77107e-06	frequency=5.377674e-02	genotype_quality=728.7	ks_quality_p_value=1	log10_base_likelihood=-6.98428	log10_qual_likelihood_position_model=13.4457	log10_strand_likelihood_position_model=5.05695	new_cov=15/0	polymorphism_quality=1.5	quality=1.5	quality_position_model=Inf	ref_cov=91/116	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=106/116
RA	1073	.	NC_007779	97880	0	C	T	frequency=1	genotype_quality=892.9	new_cov=111/114	quality=892.9	ref_cov=0/0	tot_cov=111/114
RA	1074	.	NC_007779	101246	0	T	G	bias_e_value=50.8644	bias_p_value=1.09472e-05	fisher_strand_p_value=7.23078e-07	frequency=5.840874e-02	genotype_quality=364.8	ks_quality_p_value=1	log10_base_likelihood=-17.9902	log10_qual_likelihood_position_model=8.49363	log10_strand_likelihood_position_model=6.14082	new_cov=9/0	polymorphism_quality=12.7	quality=12.7	quality_position_model=3.67194e-05	ref_cov=18/87	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=27/87
RA	1075	.	NC_007779	107544	1	.	T	bias_e_value=2122980	bias_p_value=0.456914	fisher_strand_p_value=1	frequency=9.389877e-03	genotype_quality=1031.0	ks_quality_p_value=0.162027	log10_base_likelihood=-8.14652	log10_qual_likelihood_position_model=1.43723	log10_strand_likelihood_position_model=0.307112	new_cov=1/1	polymorphism_quality=2.7	quality=2.7	quality_position_model=2.44969e-08	ref_cov=120/91	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=121/92
RA	1076	.	NC_007779	109382	0	A	G	bias_e_value=1217140	bias_p_value=0.261958	fisher_strand_p_value=0.0721974	frequency=2.962208e-02	genotype_quality=949.5	ks_quality_p_value=1	log10_base_likelihood=-14.3955	log10_qual_likelihood_position_model=8.16631	log10_strand_likelihood_position_model=1.33724	new_cov=1/7	polymorphism_quality=9.0	quality=9.0	quality_position_model=8.99315e-07	ref_cov=115/128	reject=POLYMORPHISM_STRAND	tot_cov=116/135
RA	1077	.	NC_007779	109388	0	A	G	bias_e_value=1162030	bias_p_value=0.250096	fisher_strand_p_value=0.0688662	frequency=3.142262e-02	genotype_quality=948.1	ks_quality_p_value=0.983616	log10_base_likelihood=-14.7063	log10_qual_likelihood_position_model=6.06384	log10_strand_likelihood_position_model=1.3969	new_cov=1/7	polymorphism_quality=9.4	quality=9.4	quality_position_model=3.31397e-09	ref_cov=119/126	reject=POLYMORPHISM_STRAND	tot_cov=120/133
RA	1078	.	NC_007779	109397	0	T	A	bias_e_value=1095570	bias_p_value=0.235793	fisher_strand_p_value=0.0659121	frequency=3.232098e-02	genotype_quality=957.9	ks_quality_p_value=0.948264	log10_base_likelihood=-18.6776	log10_qual_likelihood_position_model=6.47535	log10_strand_likelihood_position_model=1.51976	new_cov=1/7	polymorphism_quality=13.4	quality=13.4	quality_position_model=1.0066e-12	ref_cov=122/117	reject=POLYMORPHISM_STRAND	tot_cov=123/124
RA	1079	.	NC_007779	109398	0	T	A	bias_e_value=1130970	bias_p_value=0.243412	fisher_strand_p_value=0.0659121	frequency=3.222656e-02	genotype_quality=957.9	ks_quality_p_value=0.99029	log10_base_likelihood=-17.0598	log10_qual_likelihood_position_model=6.92098	log10_strand_likelihood_position_model=1.51976	new_cov=1/7	polymorphism_quality=11.7	quality=11.7	quality_position_model=1.29118e-10	ref_cov=122/117	reject=POLYMORPHISM_STRAND	tot_cov=123/124
RA	1080	.	NC_007779	109400	0	G	C	bias_e_value=2128420	bias_p_value=0.458086	fisher_strand_p_value=0.172559	frequency=3.476048e-02	genotype_quality=1011.5	ks_quality_p_value=0.9427	log10_base_likelihood=-23.0496	log10_qual_likelihood_position_model=5.17221	log10_strand_likelihood_position_model=1.12351	new_cov=2/7	polymorphism_quality=17.8	quality=17.8	quality_position_model=6.86603e-19	ref_cov=121/121	tot_cov=123/128
RA	1081	.	NC_007779	109401	0	A	G	bias_e_value=912791	bias_p_value=0.196454	fisher_strand_p_value=0.0660501	frequency=3.168011e-02	genotype_quality=930.5	ks_quality_p_value=0.740221	log10_base_likelihood=-17.7946	log10_qual_likelihood_position_model=3.89713	log10_strand_likelihood_position_model=1.50891	new_cov=1/7	polymorphism_quality=12.5	quality=12.5	quality_position_model=1.84383e-14	ref_cov=124/120	reject=POLYMORPHISM_STRAND	tot_cov=125/127
RA	1082	.	NC_007779	109403	0	C	T	bias_e_value=926030	bias_p_value=0.199304	fisher_strand_p_value=0.0660158	frequency=3.151417e-02	genotype_quality=975.4	ks_quality_p_value=0.754953	log10_base_likelihood=-15.8588	log10_qual_likelihood_position_model=6.10963	log10_strand_likelihood_position_model=1.5194	new_cov=1/7	polymorphism_quality=10.5	quality=10.5	quality_position_model=3.2348e-10	ref_cov=125/120	reject=POLYMORPHISM_STRAND	tot_cov=126/127
RA	1083	.	NC_007779	109406	0	C	G	bias_e_value=1148260	bias_p_value=0.247132	fisher_strand_p_value=0.0670753	frequency=3.167629e-02	genotype_quality=1029.1	ks_quality_p_value=0.993516	log10_base_likelihood=-18.9031	log10_qual_likelihood_position_model=5.61985	log10_strand_likelihood_position_model=1.44676	new_cov=1/7	polymorphism_quality=13.6	quality=13.6	quality_position_model=6.72001e-14	ref_cov=121/123	reject=POLYMORPHISM_STRAND	tot_cov=122/130
RA	1084	.	NC_007779	109407	0	T	C	bias_e_value=1068380	bias_p_value=0.229942	fisher_strand_p_value=0.0670922	frequency=3.141689e-02	genotype_quality=953.9	ks_quality_p_value=0.900322	log10_base_likelihood=-17.9501	log10_qual_likelihood_position_model=4.94333	log10_strand_likelihood_position_model=1.44722	new_cov=1/7	polymorphism_quality=12.6	quality=12.6	quality_position_model=1.28612e-13	ref_cov=122/124	reject=POLYMORPHISM_STRAND	tot_cov=123/131
RA	1085	.	NC_007779	109424	0	T	C	bias_e_value=890487	bias_p_value=0.191654	fisher_strand_p_value=0.0678155	frequency=2.813148e-02	genotype_quality=1045.3	ks_quality_p_value=0.697625	log10_base_likelihood=-18.5476	log10_qual_likelihood_position_model=3.85851	log10_strand_likelihood_position_model=1.43529	new_cov=1/7	polymorphism_quality=13.2	quality=13.2	quality_position_model=2.43384e-15	ref_cov=136/140	reject=POLYMORPHISM_STRAND	tot_cov=137/147
RA	1086	.	NC_007779	109427	0	G	C	bias_e_value=1743180	bias_p_value=0.375173	fisher_strand_p_value=0.122025	frequency=2.409840e-02	genotype_quality=1193.4	ks_quality_p_value=0.986278	log10_base_likelihood=-17.4074	log10_qual_likelihood_position_model=3.70542	log10_strand_likelihood_position_model=1.2013	new_cov=1/6	polymorphism_quality=12.1	quality=12.1	quality_position_model=1.4181e-14	ref_cov=139/144	reject=POLYMORPHISM_STRAND	tot_cov=140/150
RA	1087	.	NC_007779	109430	0	T	C	bias_e_value=1299280	bias_p_value=0.279636	fisher_strand_p_value=0.122361	frequency=2.384567e-02	genotype_quality=1103.9	ks_quality_p_value=0.645983	log10_base_likelihood=-15.7454	log10_qual_likelihood_position_model=3.96309	log10_strand_likelihood_position_model=1.19472	new_cov=1/6	polymorphism_quality=10.4	quality=10.4	quality_position_model=1.25782e-12	ref_cov=140/146	reject=POLYMORPHISM_STRAND	tot_cov=141/152
RA	1088	.	NC_007779	109433	0	A	C	bias_e_value=1961700	bias_p_value=0.422203	fisher_strand_p_value=0.215897	frequency=2.104568e-02	genotype_quality=1115.8	ks_quality_p_value=0.66493	log10_base_likelihood=-17.4602	log10_qual_likelihood_position_model=3.83384	log10_strand_likelihood_position_model=0.969529	new_cov=1/5	polymorphism_quality=12.1	quality=12.1	quality_position_model=9.83896e-15	ref_cov=136/143	reject=POLYMORPHISM_STRAND	tot_cov=137/148
RA	1089	.	NC_007779	109436	0	A	G	bias_e_value=722398	bias_p_value=0.155477	fisher_strand_p_value=0.216299	frequency=2.103710e-02	genotype_quality=1066.4	ks_quality_p_value=0.166164	log10_base_likelihood=-12.3102	log10_qual_likelihood_position_model=3.63075	log10_strand_likelihood_position_model=0.96347	new_cov=1/5	polymorphism_quality=6.9	quality=6.9	quality_position_model=1.08885e-09	ref_cov=135/143	reject=POLYMORPHISM_STRAND	tot_cov=136/148
RA	1090	.	NC_007779	109440	0	G	T	bias_e_value=2177210	bias_p_value=0.468588	fisher_strand_p_value=0.214661	frequency=2.075672e-02	genotype_quality=1190.7	ks_quality_p_value=0.78501	log10_base_likelihood=-10.8826	log10_qual_likelihood_position_model=3.32375	log10_strand_likelihood_position_model=0.993431	new_cov=1/5	polymorphism_quality=5.5	quality=5.5	quality_position_model=1.66233e-08	ref_cov=139/142	reject=POLYMORPHISM_STRAND	tot_cov=140/147
RA	1091	.	NC_007779	109442	0	G	C	bias_e_value=1376440	bias_p_value=0.296243	fisher_strand_p_value=0.214638	frequency=2.103233e-02	genotype_quality=1180.6	ks_quality_p_value=0.39925	log10_base_likelihood=-15.9102	log10_qual_likelihood_position_model=2.50812	log10_strand_likelihood_position_model=0.993189	new_cov=1/5	polymorphism_quality=10.6	quality=10.6	quality_position_model=1.75813e-14	ref_cov=138/141	reject=POLYMORPHISM_STRAND	tot_cov=139/146
RA	1092	.	NC_007779	109445	0	G	T	bias_e_value=261555	bias_p_value=0.0562928	fisher_strand_p_value=0.215514	frequency=2.113533e-02	genotype_quality=1162.7	ks_quality_p_value=0.0466437	log10_base_likelihood=-10.9145	log10_qual_likelihood_position_model=4.50158	log10_strand_likelihood_position_model=0.974844	new_cov=1/5	polymorphism_quality=5.5	quality=5.5	quality_position_model=2.43459e-07	ref_cov=135/141	reject=POLYMORPHISM_STRAND	tot_cov=136/146
RA	1093	.	NC_007779	109457	0	T	G	bias_e_value=62644.8	bias_p_value=0.0134826	fisher_strand_p_value=0.21864	frequency=2.289295e-02	genotype_quality=988.4	ks_quality_p_value=0.00845514	log10_base_likelihood=-18.197	log10_qual_likelihood_position_model=5.05565	log10_strand_likelihood_position_model=0.933224	new_cov=1/5	polymorphism_quality=12.9	quality=12.9	quality_position_model=2.81348e-14	ref_cov=122/134	reject=POLYMORPHISM_STRAND	tot_cov=123/139
RA	1094	.	NC_007779	109463	0	T	G	bias_e_value=235441	bias_p_value=0.0506725	fisher_strand_p_value=0.217849	frequency=2.196789e-02	genotype_quality=1025.3	ks_quality_p_value=0.0406105	log10_base_likelihood=-17.1364	log10_qual_likelihood_position_model=4.98139	log10_strand_likelihood_position_model=0.942877	new_cov=1/5	polymorphism_quality=11.8	quality=11.8	quality_position_model=2.90462e-13	ref_cov=128/139	reject=POLYMORPHISM_STRAND	tot_cov=129/144
RA	1095	.	NC_007779	119384	0	T	G	bias_e_value=3.33574e-17	bias_p_value=7.1793e-24	fisher_strand_p_value=1.23023e-25	frequency=2.140617e-01	genotype_quality=406.0	ks_quality_p_value=1	log10_base_likelihood=-38.4328	log10_qual_likelihood_position_model=40.4985	log10_strand_likelihood_position_model=24.91	new_cov=52/0	polymorphism_quality=33.3	quality=33.3	quality_position_model=Inf	ref_cov=29/106	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=81/106
RA	1096	.	NC_007779	119389	0	C	A	bias_e_value=10.1602	bias_p_value=2.18672e-06	fisher_strand_p_value=1.29715e-07	frequency=6.308222e-02	genotype_quality=611.8	ks_quality_p_value=1	log10_base_likelihood=-7.75482	log10_qual_likelihood_position_model=13.2093	log10_strand_likelihood_position_model=6.88701	new_cov=17/0	polymorphism_quality=2.3	quality=2.3	quality_position_model=Inf	ref_cov=60/106	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=77/106
RA	1097	.	NC_007779	134366	0	G	T	bias_e_value=2.31725	bias_p_value=4.98726e-07	fisher_strand_p_value=2.73986e-08	frequency=7.253218e-02	genotype_quality=831.5	ks_quality_p_value=0.987934	log10_base_likelihood=-17.1461	log10_qual_likelihood_position_model=19.0858	log10_strand_likelihood_position_model=7.56227	new_cov=0/23	polymorphism_quality=11.8	quality=11.8	quality_position_model=Inf	ref_cov=131/104	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=131/127
RA	1098	.	NC_007779	136449	1	.	T	bias_e_value=3817240	bias_p_value=0.82156	fisher_strand_p_value=0.504845	frequency=1.010036e-02	genotype_quality=969.0	ks_quality_p_value=0.922371	log10_base_likelihood=-7.74998	log10_qual_likelihood_position_model=2.25668	log10_strand_likelihood_position_model=0.504416	new_cov=2/0	polymorphism_quality=2.3	quality=2.3	quality_position_model=7.12895e-07	ref_cov=109/87	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=111/87
RA	1099	.	NC_007779	137009	0	G	T	bias_e_value=57.3795	bias_p_value=1.23494e-05	fisher_strand_p_value=8.34866e-07	frequency=6.971645e-02	genotype_quality=649.3	ks_quality_p_value=0.985439	log10_base_likelihood=-13.9585	log10_qual_likelihood_position_model=20.9484	log10_strand_likelihood_position_model=6.09016	new_cov=15/1	polymorphism_quality=8.6	quality=8.6	quality_position_model=Inf	ref_cov=55/124	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=70/125
RA	1100	.	NC_007779	158557	0	G	T	bias_e_value=13493.7	bias_p_value=0.00290417	fisher_strand_p_value=0.000321127	frequency=3.639603e-02	genotype_quality=749.1	ks_quality_p_value=1	log10_base_likelihood=-5.81675	log10_qual_likelihood_position_model=12.8028	log10_strand_likelihood_position_model=3.49332	new_cov=0/11	polymorphism_quality=0.3	quality=0.3	quality_position_model=Inf	ref_cov=112/98	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=112/111
RA	1101	.	NC_007779	167632	0	C	A	frequency=1	genotype_quality=729.9	new_cov=99/83	quality=729.9	ref_cov=0/0	tot_cov=99/83
RA	1102	.	NC_007779	175694	0	T	G	bias_e_value=5.64678e-16	bias_p_value=1.21532e-22	fisher_strand_p_value=2.19064e-24	frequency=1.349263e-01	genotype_quality=571.3	ks_quality_p_value=1	log10_base_likelihood=-16.1681	log10_qual_likelihood_position_model=34.4947	log10_strand_likelihood_position_model=23.6594	new_cov=54/0	polymorphism_quality=10.8	quality=10.8	quality_position_model=Inf	ref_cov=51/133	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=106/133
RA	1103	.	NC_007779	179256	1	.	A	bias_e_value=3461380	bias_p_value=0.74497	fisher_strand_p_value=0.497608	frequency=9.523392e-03	genotype_quality=1021.8	ks_quality_p_value=0.758043	log10_base_likelihood=-8.56398	log10_qual_likelihood_position_model=0.996747	log10_strand_likelihood_position_model=0.604143	new_cov=2/0	polymorphism_quality=3.1	quality=3.1	quality_position_model=6.47126e-09	ref_cov=103/105	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=105/105
RA	1104	.	NC_007779	190413	0	T	C	bias_e_value=191261	bias_p_value=0.0411639	fisher_strand_p_value=0.314958	frequency=6.471109e-02	genotype_quality=806.1	ks_quality_p_value=0.0218617	log10_base_likelihood=-41.9649	log10_qual_likelihood_position_model=7.98753	log10_strand_likelihood_position_model=0.920969	new_cov=10/6	polymorphism_quality=36.8	quality=36.8	quality_position_model=2.45055e-35	ref_cov=113/118	tot_cov=123/124
RA	1105	.	NC_007779	190422	0	A	T	bias_e_value=3793080	bias_p_value=0.81636	fisher_strand_p_value=0.616934	frequency=6.879616e-02	genotype_quality=901.7	ks_quality_p_value=0.743864	log10_base_likelihood=-48.6262	log10_qual_likelihood_position_model=6.31962	log10_strand_likelihood_position_model=0.805302	new_cov=10/7	polymorphism_quality=43.5	quality=43.5	quality_position_model=7.8623e-44	ref_cov=115/115	reject=SURROUNDING_HOMOPOLYMER	tot_cov=125/122
RA	1106	.	NC_007779	190423	0	T	G	bias_e_value=3262450	bias_p_value=0.702155	fisher_strand_p_value=0.620649	frequency=7.053900e-02	genotype_quality=846.3	ks_quality_p_value=0.540924	log10_base_likelihood=-58.1482	log10_qual_likelihood_position_model=6.71136	log10_strand_likelihood_position_model=0.774834	new_cov=10/7	polymorphism_quality=53.1	quality=53.1	quality_position_model=4.91939e-53	ref_cov=115/109	tot_cov=125/116
RA	1107	.	NC_007779	190428	0	T	C	bias_e_value=4318430	bias_p_value=0.929428	fisher_strand_p_value=0.808589	frequency=7.129812e-02	genotype_quality=874.4	ks_quality_p_value=0.802205	log10_base_likelihood=-47.2155	log10_qual_likelihood_position_model=6.58074	log10_strand_likelihood_position_model=0.745307	new_cov=10/8	polymorphism_quality=42.1	quality=42.1	quality_position_model=3.28008e-42	ref_cov=119/115	tot_cov=129/123
RA	1108	.	NC_007779	190432	0	G	C	bias_e_value=2626980	bias_p_value=0.565388	fisher_strand_p_value=0.620074	frequency=6.638050e-02	genotype_quality=1010.1	ks_quality_p_value=0.368037	log10_base_likelihood=-52.2598	log10_qual_likelihood_position_model=5.38828	log10_strand_likelihood_position_model=0.782281	new_cov=10/7	polymorphism_quality=47.2	quality=47.2	quality_position_model=1.9277e-48	ref_cov=122/117	tot_cov=132/124
RA	1109	.	NC_007779	190434	0	T	G	bias_e_value=3955500	bias_p_value=0.851316	fisher_strand_p_value=0.619879	frequency=6.854773e-02	genotype_quality=871.2	ks_quality_p_value=0.817757	log10_base_likelihood=-58.2589	log10_qual_likelihood_position_model=7.01815	log10_strand_likelihood_position_model=0.780826	new_cov=10/7	polymorphism_quality=53.2	quality=53.2	quality_position_model=7.84982e-53	ref_cov=118/113	tot_cov=128/120
RA	1110	.	NC_007779	190437	0	T	C	bias_e_value=771066	bias_p_value=0.165952	fisher_strand_p_value=0.620787	frequency=6.599331e-02	genotype_quality=847.3	ks_quality_p_value=0.0630361	log10_base_likelihood=-40.6296	log10_qual_likelihood_position_model=10.8296	log10_strand_likelihood_position_model=0.776495	new_cov=10/7	polymorphism_quality=35.5	quality=35.5	quality_position_model=2.81831e-31	ref_cov=119/113	tot_cov=129/120
RA	1111	.	NC_007779	190445	0	C	G	bias_e_value=3710420	bias_p_value=0.79857	fisher_strand_p_value=0.620753	frequency=6.879282e-02	genotype_quality=973.3	ks_quality_p_value=0.703617	log10_base_likelihood=-52.0504	log10_qual_likelihood_position_model=6.52976	log10_strand_likelihood_position_model=0.776089	new_cov=10/7	polymorphism_quality=47.0	quality=47.0	quality_position_model=4.32614e-47	ref_cov=118/112	tot_cov=128/119
RA	1112	.	NC_007779	190446	0	T	C	bias_e_value=4050100	bias_p_value=0.871676	fisher_strand_p_value=0.809841	frequency=7.200336e-02	genotype_quality=850.7	ks_quality_p_value=0.66467	log10_base_likelihood=-43.3784	log10_qual_likelihood_position_model=8.04253	log10_strand_likelihood_position_model=0.736417	new_cov=10/8	polymorphism_quality=38.3	quality=38.3	quality_position_model=6.8616e-37	ref_cov=118/111	tot_cov=128/119
RA	1113	.	NC_007779	190449	0	T	C	bias_e_value=1535920	bias_p_value=0.330566	fisher_strand_p_value=0.618114	frequency=6.624985e-02	genotype_quality=865.9	ks_quality_p_value=0.161999	log10_base_likelihood=-41.9398	log10_qual_likelihood_position_model=8.07723	log10_strand_likelihood_position_model=0.796111	new_cov=10/7	polymorphism_quality=36.8	quality=36.8	quality_position_model=2.39409e-35	ref_cov=120/118	tot_cov=130/125
RA	1114	.	NC_007779	190455	0	C	T	bias_e_value=4254600	bias_p_value=0.915689	fisher_strand_p_value=0.618554	frequency=6.648588e-02	genotype_quality=919.2	ks_quality_p_value=1	log10_base_likelihood=-36.9198	log10_qual_likelihood_position_model=8.5785	log10_strand_likelihood_position_model=0.79088	new_cov=10/7	polymorphism_quality=31.8	quality=31.8	quality_position_model=8.5953e-30	ref_cov=119/116	tot_cov=129/123
RA	1115	.	NC_007779	190457	0	G	A	bias_e_value=4257550	bias_p_value=0.916324	fisher_strand_p_value=0.619879	frequency=6.835079e-02	genotype_quality=907.5	ks_quality_p_value=1	log10_base_likelihood=-38.265	log10_qual_likelihood_position_model=10.8999	log10_strand_likelihood_position_model=0.780826	new_cov=10/7	polymorphism_quality=33.1	quality=33.1	quality_position_model=8.09145e-29	ref_cov=118/113	tot_cov=128/120
RA	1116	.	NC_007779	190458	0	T	C	bias_e_value=2140580	bias_p_value=0.460702	fisher_strand_p_value=0.620822	frequency=6.754541e-02	genotype_quality=809.5	ks_quality_p_value=0.264352	log10_base_likelihood=-40.7278	log10_qual_likelihood_position_model=7.98832	log10_strand_likelihood_position_model=0.776894	new_cov=10/7	polymorphism_quality=35.6	quality=35.6	quality_position_model=3.09236e-34	ref_cov=120/114	tot_cov=130/121
RA	1117	.	NC_007779	190464	0	C	T	bias_e_value=4552650	bias_p_value=0.979838	fisher_strand_p_value=0.807878	frequency=6.888628e-02	genotype_quality=941.4	ks_quality_p_value=0.997714	log10_base_likelihood=-39.3988	log10_qual_likelihood_position_model=10.9901	log10_strand_likelihood_position_model=0.758607	new_cov=10/8	polymorphism_quality=34.3	quality=34.3	quality_position_model=6.82036e-30	ref_cov=121/121	tot_cov=131/129
RA	1118	.	NC_007779	190468	0	G	C	bias_e_value=3192630	bias_p_value=0.687128	fisher_strand_p_value=0.617764	frequency=6.280994e-02	genotype_quality=1051.8	ks_quality_p_value=0.521573	log10_base_likelihood=-42.947	log10_qual_likelihood_position_model=12.1913	log10_strand_likelihood_position_model=0.806919	new_cov=10/7	polymorphism_quality=37.8	quality=37.8	quality_position_model=3.29655e-32	ref_cov=124/124	tot_cov=134/131
RA	1119	.	NC_007779	190469	0	T	C	bias_e_value=4251580	bias_p_value=0.915041	fisher_strand_p_value=0.617398	frequency=6.463718e-02	genotype_quality=914.5	ks_quality_p_value=0.99969	log10_base_likelihood=-41.1619	log10_qual_likelihood_position_model=7.84228	log10_strand_likelihood_position_model=0.811676	new_cov=10/7	polymorphism_quality=36.0	quality=36.0	quality_position_model=8.73598e-35	ref_cov=122/123	tot_cov=132/130
RA	1120	.	NC_007779	190470	0	T	G	bias_e_value=4245400	bias_p_value=0.91371	fisher_strand_p_value=0.617398	frequency=6.481695e-02	genotype_quality=939.8	ks_quality_p_value=0.995244	log10_base_likelihood=-52.238	log10_qual_likelihood_position_model=9.5949	log10_strand_likelihood_position_model=0.811676	new_cov=10/7	polymorphism_quality=47.2	quality=47.2	quality_position_model=3.66189e-44	ref_cov=122/123	tot_cov=132/130
RA	1121	.	NC_007779	190479	0	T	C	bias_e_value=853515	bias_p_value=0.183696	fisher_strand_p_value=0.461483	frequency=6.500673e-02	genotype_quality=863.6	ks_quality_p_value=0.0969164	log10_base_likelihood=-42.0358	log10_qual_likelihood_position_model=8.51725	log10_strand_likelihood_position_model=0.83849	new_cov=10/7	polymorphism_quality=36.9	quality=36.9	quality_position_model=5.86225e-35	ref_cov=119/125	tot_cov=129/132
RA	1122	.	NC_007779	190497	0	T	C	bias_e_value=3987550	bias_p_value=0.858215	fisher_strand_p_value=0.60979	frequency=5.852509e-02	genotype_quality=955.2	ks_quality_p_value=0.848191	log10_base_likelihood=-39.0045	log10_qual_likelihood_position_model=6.38929	log10_strand_likelihood_position_model=0.78263	new_cov=9/7	polymorphism_quality=33.9	quality=33.9	quality_position_model=4.17992e-34	ref_cov=123/134	tot_cov=132/141
RA	1123	.	NC_007779	193477	1	.	G	bias_e_value=2660780	bias_p_value=0.572662	fisher_strand_p_value=0.235767	frequency=1.047039e-02	genotype_quality=935.8	ks_quality_p_value=0.988981	log10_base_likelihood=-7.6958	log10_qual_likelihood_position_model=2.20954	log10_strand_likelihood_position_model=0.627516	new_cov=2/0	polymorphism_quality=2.2	quality=2.2	quality_position_model=9.73837e-07	ref_cov=91/98	reject=POLYMORPHISM_STRAND	tot_cov=93/98
RA	1124	.	NC_007779	193480	0	C	G	bias_e_value=9.10266e-07	bias_p_value=1.95911e-13	fisher_strand_p_value=5.81507e-15	frequency=1.793618e-01	genotype_quality=495.6	ks_quality_p_value=0.997311	log10_base_likelihood=-39.9781	log10_qual_likelihood_position_model=23.0701	log10_strand_likelihood_position_model=14.2354	new_cov=32/0	polymorphism_quality=34.8	quality=34.8	quality_position_model=0.000195949	ref_cov=40/99	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=72/100
RA	1125	.	NC_007779	193483	0	C	G	bias_e_value=0.00146529	bias_p_value=3.15366e-10	fisher_strand_p_value=1.20641e-11	frequency=1.155853e-01	genotype_quality=492.2	ks_quality_p_value=1	log10_base_likelihood=-12.8049	log10_qual_likelihood_position_model=20.9287	log10_strand_likelihood_position_model=10.9185	new_cov=23/0	polymorphism_quality=7.4	quality=7.4	quality_position_model=Inf	ref_cov=39/100	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=62/100
RA	1126	.	NC_007779	193489	0	G	T	bias_e_value=2.30021e-05	bias_p_value=4.9506e-12	fisher_strand_p_value=1.62595e-13	frequency=1.448946e-01	genotype_quality=573.7	ks_quality_p_value=1	log10_base_likelihood=-19.5637	log10_qual_likelihood_position_model=20.7137	log10_strand_likelihood_position_model=12.7889	new_cov=29/0	polymorphism_quality=14.3	quality=14.3	quality_position_model=Inf	ref_cov=46/106	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=75/106
RA	1127	.	NC_007779	193496	0	A	T	bias_e_value=0.000242377	bias_p_value=5.21652e-11	fisher_strand_p_value=1.86244e-12	frequency=1.376505e-01	genotype_quality=560.2	ks_quality_p_value=1	log10_base_likelihood=-39.7332	log10_qual_likelihood_position_model=27.1747	log10_strand_likelihood_position_model=11.7299	new_cov=24/0	polymorphism_quality=34.6	quality=34.6	quality_position_model=0.0226325	ref_cov=40/108	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=64/108
RA	1128	.	NC_007779	201737	1	.	G	bias_e_value=1425130	bias_p_value=0.306721	fisher_strand_p_value=0.0980517	frequency=1.546288e-02	genotype_quality=915.4	ks_quality_p_value=0.917907	log10_base_likelihood=-11.5604	log10_qual_likelihood_position_model=3.32263	log10_strand_likelihood_position_model=1.00855	new_cov=3/0	polymorphism_quality=6.2	quality=6.2	quality_position_model=3.44468e-09	ref_cov=87/104	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=90/104
RA	1129	.	NC_007779	204470	0	C	A	bias_e_value=104455	bias_p_value=0.0224811	fisher_strand_p_value=0.00338381	frequency=3.874302e-02	genotype_quality=631.0	ks_quality_p_value=0.992091	log10_base_likelihood=-8.52336	log10_qual_likelihood_position_model=12.589	log10_strand_likelihood_position_model=2.64938	new_cov=0/9	polymorphism_quality=3.1	quality=3.1	quality_position_model=Inf	ref_cov=94/92	reject=POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=94/101
RA	1130	.	NC_007779	212548	0	T	G	bias_e_value=0.0148109	bias_p_value=3.18765e-09	fisher_strand_p_value=1.34326e-10	frequency=9.441614e-02	genotype_quality=502.5	ks_quality_p_value=1	log10_base_likelihood=-9.70074	log10_qual_likelihood_position_model=27.4774	log10_strand_likelihood_position_model=9.87184	new_cov=28/0	polymorphism_quality=4.3	quality=4.3	quality_position_model=Inf	ref_cov=62/95	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=91/95
RA	1131	.	NC_007779	215133	1	.	A	bias_e_value=1839420	bias_p_value=0.395886	fisher_strand_p_value=0.228727	frequency=1.156044e-02	genotype_quality=836.0	ks_quality_p_value=0.569772	log10_base_likelihood=-8.35863	log10_qual_likelihood_position_model=1.25034	log10_strand_likelihood_position_model=0.640683	new_cov=0/2	polymorphism_quality=2.9	quality=2.9	quality_position_model=2.097e-08	ref_cov=90/81	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=90/83
RA	1132	.	NC_007779	224686	0	T	G	bias_e_value=4379430	bias_p_value=0.942557	fisher_strand_p_value=0.797802	frequency=5.246940e-01	genotype_quality=91.7	ks_quality_p_value=0.853338	log10_base_likelihood=-102.411	log10_qual_likelihood_position_model=5.79742	log10_strand_likelihood_position_model=0.705219	new_cov=20/12	polymorphism_quality=97.5	quality=97.5	quality_position_model=2.03157e-98	ref_cov=17/12	tot_cov=37/24
RA	1133	.	NC_007779	224713	0	T	C	bias_e_value=82104.5	bias_p_value=0.0176708	fisher_strand_p_value=0.416685	frequency=2.601576e-01	genotype_quality=308.8	ks_quality_p_value=0.00607679	log10_base_likelihood=-97.5091	log10_qual_likelihood_position_model=11.3697	log10_strand_likelihood_position_model=0.934915	new_cov=20/12	polymorphism_quality=92.6	quality=92.6	quality_position_model=1.08977e-87	ref_cov=49/42	tot_cov=69/54
RA	1134	.	NC_007779	224725	0	T	A	bias_e_value=2334210	bias_p_value=0.502376	fisher_strand_p_value=0.426721	frequency=2.141814e-01	genotype_quality=426.9	ks_quality_p_value=0.440806	log10_base_likelihood=-96.2424	log10_qual_likelihood_position_model=15.8825	log10_strand_likelihood_position_model=0.956884	new_cov=20/12	polymorphism_quality=91.3	quality=91.3	quality_position_model=7.14505e-82	ref_cov=63/54	tot_cov=83/66
RA	1135	.	NC_007779	224759	0	T	G	bias_e_value=4473950	bias_p_value=0.9629	fisher_strand_p_value=1	frequency=1.534963e-01	genotype_quality=780.6	ks_quality_p_value=0.740274	log10_base_likelihood=-131.706	log10_qual_likelihood_position_model=13.4212	log10_strand_likelihood_position_model=0.854705	new_cov=20/17	polymorphism_quality=126.8	quality=126.8	quality_position_model=5.52445e-120	ref_cov=107/97	tot_cov=127/114
RA	1136	.	NC_007779	224768	0	C	A	bias_e_value=4597340	bias_p_value=0.989455	fisher_strand_p_value=0.859413	frequency=1.411529e-01	genotype_quality=929.1	ks_quality_p_value=0.998745	log10_base_likelihood=-104.625	log10_qual_likelihood_position_model=17.2189	log10_strand_likelihood_position_model=0.874748	new_cov=20/17	polymorphism_quality=99.7	quality=99.7	quality_position_model=5.09449e-89	ref_cov=115/110	tot_cov=135/127
RA	1137	.	NC_007779	224769	0	C	T	bias_e_value=4597980	bias_p_value=0.989593	fisher_strand_p_value=0.859245	frequency=1.429949e-01	genotype_quality=908.4	ks_quality_p_value=1	log10_base_likelihood=-94.2602	log10_qual_likelihood_position_model=17.5976	log10_strand_likelihood_position_model=0.873812	new_cov=20/17	polymorphism_quality=89.3	quality=89.3	quality_position_model=3.00775e-78	ref_cov=113/108	tot_cov=133/125
RA	1138	.	NC_007779	224772	1	.	G	bias_e_value=2517950	bias_p_value=0.541922	fisher_strand_p_value=0.212742	frequency=2.586174e-02	genotype_quality=1102.5	ks_quality_p_value=0.999771	log10_base_likelihood=-26.3452	log10_qual_likelihood_position_model=7.78095	log10_strand_likelihood_position_model=1.02245	new_cov=1/5	polymorphism_quality=21.1	quality=21.1	quality_position_model=1.09408e-19	ref_cov=114/112	reject=POLYMORPHISM_STRAND	tot_cov=115/117
RA	1139	.	NC_007779	224775	0	A	T	bias_e_value=2498920	bias_p_value=0.537826	fisher_strand_p_value=0.217651	frequency=2.469254e-02	genotype_quality=924.8	ks_quality_p_value=0.965114	log10_base_likelihood=-12.2486	log10_qual_likelihood_position_model=6.59543	log10_strand_likelihood_position_model=0.938995	new_cov=1/5	polymorphism_quality=6.9	quality=6.9	quality_position_model=1.3776e-06	ref_cov=113/123	reject=POLYMORPHISM_STRAND	tot_cov=114/128
RA	1140	.	NC_007779	224777	0	T	G	bias_e_value=2603270	bias_p_value=0.560284	fisher_strand_p_value=0.224773	frequency=2.470016e-02	genotype_quality=929.8	ks_quality_p_value=1	log10_base_likelihood=-14.4076	log10_qual_likelihood_position_model=6.77086	log10_strand_likelihood_position_model=0.885519	new_cov=1/5	polymorphism_quality=9.1	quality=9.1	quality_position_model=1.06953e-08	ref_cov=108/126	reject=POLYMORPHISM_STRAND	tot_cov=109/131
RA	1141	.	NC_007779	224778	0	T	C	bias_e_value=2586970	bias_p_value=0.556777	fisher_strand_p_value=0.224773	frequency=2.468681e-02	genotype_quality=918.0	ks_quality_p_value=0.989585	log10_base_likelihood=-9.95964	log10_qual_likelihood_position_model=6.35903	log10_strand_likelihood_position_model=0.885519	new_cov=1/5	polymorphism_quality=4.5	quality=4.5	quality_position_model=0.000176445	ref_cov=108/126	reject=POLYMORPHISM_STRAND	tot_cov=109/131
RA	1142	.	NC_007779	224779	0	T	G	bias_e_value=2602930	bias_p_value=0.560212	fisher_strand_p_value=0.224773	frequency=2.469063e-02	genotype_quality=922.0	ks_quality_p_value=0.999786	log10_base_likelihood=-14.1265	log10_qual_likelihood_position_model=6.38543	log10_strand_likelihood_position_model=0.885519	new_cov=1/5	polymorphism_quality=8.8	quality=8.8	quality_position_model=8.35077e-09	ref_cov=108/126	reject=POLYMORPHISM_STRAND	tot_cov=109/131
RA	1143	.	NC_007779	224790	0	A	.	bias_e_value=201634	bias_p_value=0.0433964	fisher_strand_p_value=0.0628158	frequency=1.959515e-02	genotype_quality=980.9	ks_quality_p_value=0.1168	log10_base_likelihood=-13.9276	log10_qual_likelihood_position_model=4.64289	log10_strand_likelihood_position_model=1.38017	new_cov=0/5	polymorphism_quality=8.6	quality=8.6	quality_position_model=6.97295e-10	ref_cov=119/131	reject=POLYMORPHISM_STRAND	tot_cov=119/136
RA	1144	.	NC_007779	224791	0	T	.	bias_e_value=330980	bias_p_value=0.0712347	fisher_strand_p_value=0.0639424	frequency=1.982594e-02	genotype_quality=974.6	ks_quality_p_value=0.209735	log10_base_likelihood=-13.5438	log10_qual_likelihood_position_model=5.2916	log10_strand_likelihood_position_model=1.35426	new_cov=0/5	polymorphism_quality=8.2	quality=8.2	quality_position_model=7.55215e-09	ref_cov=116/131	reject=POLYMORPHISM_STRAND	tot_cov=116/136
RA	1145	.	NC_007779	224794	0	G	T	bias_e_value=1124050	bias_p_value=0.241921	fisher_strand_p_value=0.0647682	frequency=1.957130e-02	genotype_quality=1028.1	ks_quality_p_value=0.999358	log10_base_likelihood=-7.34749	log10_qual_likelihood_position_model=7.05315	log10_strand_likelihood_position_model=1.33812	new_cov=0/5	polymorphism_quality=1.8	quality=1.8	quality_position_model=Inf	ref_cov=115/132	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=115/137
RA	1146	.	NC_007779	224796	0	G	T	bias_e_value=1079110	bias_p_value=0.23225	fisher_strand_p_value=0.0666602	frequency=1.968575e-02	genotype_quality=998.6	ks_quality_p_value=0.918523	log10_base_likelihood=-8.23425	log10_qual_likelihood_position_model=3.45701	log10_strand_likelihood_position_model=1.30618	new_cov=0/5	polymorphism_quality=2.8	quality=2.8	quality_position_model=2.77317e-05	ref_cov=113/134	reject=POLYMORPHISM_STRAND	tot_cov=113/139
RA	1147	.	NC_007779	224799	0	T	C	bias_e_value=1101040	bias_p_value=0.236969	fisher_strand_p_value=0.0667471	frequency=2.068329e-02	genotype_quality=963.0	ks_quality_p_value=0.942764	log10_base_likelihood=-9.60305	log10_qual_likelihood_position_model=3.97116	log10_strand_likelihood_position_model=1.30465	new_cov=0/5	polymorphism_quality=4.2	quality=4.2	quality_position_model=3.49289e-06	ref_cov=112/133	reject=POLYMORPHISM_STRAND	tot_cov=113/138
RA	1148	.	NC_007779	224801	0	C	T	bias_e_value=1115210	bias_p_value=0.240019	fisher_strand_p_value=0.0669552	frequency=1.930332e-02	genotype_quality=1041.2	ks_quality_p_value=0.956357	log10_base_likelihood=-8.73586	log10_qual_likelihood_position_model=3.46522	log10_strand_likelihood_position_model=1.30214	new_cov=0/5	polymorphism_quality=3.3	quality=3.3	quality_position_model=8.30101e-06	ref_cov=115/137	reject=POLYMORPHISM_STRAND	tot_cov=115/142
RA	1149	.	NC_007779	224803	0	G	T	bias_e_value=1141680	bias_p_value=0.245716	fisher_strand_p_value=0.0661184	frequency=1.948738e-02	genotype_quality=1033.6	ks_quality_p_value=1	log10_base_likelihood=-7.28767	log10_qual_likelihood_position_model=7.18196	log10_strand_likelihood_position_model=1.31485	new_cov=0/5	polymorphism_quality=1.8	quality=1.8	quality_position_model=Inf	ref_cov=114/134	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=114/139
RA	1150	.	NC_007779	224805	0	A	G	bias_e_value=1084660	bias_p_value=0.233445	fisher_strand_p_value=0.0638199	frequency=1.921940e-02	genotype_quality=981.3	ks_quality_p_value=0.966117	log10_base_likelihood=-8.45624	log10_qual_likelihood_position_model=4.96952	log10_strand_likelihood_position_model=1.35768	new_cov=0/5	polymorphism_quality=3.0	quality=3.0	quality_position_model=0.000756664	ref_cov=119/134	reject=POLYMORPHISM_STRAND	tot_cov=119/139
RA	1151	.	NC_007779	224806	0	A	C	bias_e_value=992167	bias_p_value=0.213538	fisher_strand_p_value=0.0638199	frequency=1.935863e-02	genotype_quality=980.0	ks_quality_p_value=0.856482	log10_base_likelihood=-12.7868	log10_qual_likelihood_position_model=4.07578	log10_strand_likelihood_position_model=1.35768	new_cov=0/5	polymorphism_quality=7.4	quality=7.4	quality_position_model=2.56757e-09	ref_cov=119/134	reject=POLYMORPHISM_STRAND	tot_cov=119/139
RA	1152	.	NC_007779	224807	0	C	T	bias_e_value=1116420	bias_p_value=0.24028	fisher_strand_p_value=0.0641379	frequency=1.866722e-02	genotype_quality=1051.0	ks_quality_p_value=0.99985	log10_base_likelihood=-6.86388	log10_qual_likelihood_position_model=6.60707	log10_strand_likelihood_position_model=1.3515	new_cov=0/5	polymorphism_quality=1.3	quality=1.3	quality_position_model=Inf	ref_cov=120/136	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=120/141
RA	1153	.	NC_007779	224811	0	G	.	bias_e_value=1105170	bias_p_value=0.237858	fisher_strand_p_value=0.0632592	frequency=2.013969e-02	genotype_quality=1006.7	ks_quality_p_value=0.999834	log10_base_likelihood=-12.9162	log10_qual_likelihood_position_model=6.85427	log10_strand_likelihood_position_model=1.36841	new_cov=0/5	polymorphism_quality=7.5	quality=7.5	quality_position_model=1.44763e-06	ref_cov=115/128	reject=POLYMORPHISM_STRAND	tot_cov=115/133
RA	1154	.	NC_007779	224813	0	G	T	bias_e_value=1095060	bias_p_value=0.235682	fisher_strand_p_value=0.0624717	frequency=1.887703e-02	genotype_quality=1037.1	ks_quality_p_value=0.999847	log10_base_likelihood=-6.36345	log10_qual_likelihood_position_model=7.91277	log10_strand_likelihood_position_model=1.38962	new_cov=0/5	polymorphism_quality=0.8	quality=0.8	quality_position_model=Inf	ref_cov=121/132	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=121/137
RA	1155	.	NC_007779	224821	0	C	G	bias_e_value=994215	bias_p_value=0.213978	fisher_strand_p_value=0.0622331	frequency=1.987934e-02	genotype_quality=988.5	ks_quality_p_value=0.880759	log10_base_likelihood=-11.2767	log10_qual_likelihood_position_model=3.70139	log10_strand_likelihood_position_model=1.39473	new_cov=0/5	polymorphism_quality=5.9	quality=5.9	quality_position_model=4.14864e-08	ref_cov=118/128	reject=POLYMORPHISM_STRAND	tot_cov=118/133
RA	1156	.	NC_007779	224829	0	C	T	bias_e_value=1011560	bias_p_value=0.217713	fisher_strand_p_value=0.0621751	frequency=1.914215e-02	genotype_quality=998.4	ks_quality_p_value=0.902346	log10_base_likelihood=-8.44043	log10_qual_likelihood_position_model=4.11072	log10_strand_likelihood_position_model=1.39808	new_cov=0/5	polymorphism_quality=3.0	quality=3.0	quality_position_model=0.000103583	ref_cov=122/132	reject=POLYMORPHISM_STRAND	tot_cov=122/137
RA	1157	.	NC_007779	224887	0	A	G	bias_e_value=4854.46	bias_p_value=0.00104479	fisher_strand_p_value=0.11619	frequency=2.372036e-01	genotype_quality=824.4	ks_quality_p_value=0.000882897	log10_base_likelihood=-246.785	log10_qual_likelihood_position_model=16.1371	log10_strand_likelihood_position_model=1.59262	new_cov=48/29	polymorphism_quality=242.0	quality=242.0	quality_position_model=9.38509e-232	ref_cov=128/121	reject=KS_QUALITY_P_VALUE	tot_cov=177/150
RA	1158	.	NC_007779	224892	0	T	A	bias_e_value=25686.1	bias_p_value=0.00552826	fisher_strand_p_value=0.149407	frequency=2.436643e-01	genotype_quality=823.6	ks_quality_p_value=0.00444938	log10_base_likelihood=-272.666	log10_qual_likelihood_position_model=20.5507	log10_strand_likelihood_position_model=1.44765	new_cov=48/29	polymorphism_quality=267.9	quality=267.9	quality_position_model=2.19016e-253	ref_cov=126/113	tot_cov=174/142
RA	1159	.	NC_007779	224901	1	.	C	bias_e_value=1083470	bias_p_value=0.233188	fisher_strand_p_value=0.252744	frequency=1.003075e-02	genotype_quality=929.5	ks_quality_p_value=0.243587	log10_base_likelihood=-10.945	log10_qual_likelihood_position_model=3.17174	log10_strand_likelihood_position_model=0.802183	new_cov=3/0	polymorphism_quality=5.5	quality=5.5	quality_position_model=6.34984e-09	ref_cov=159/137	reject=POLYMORPHISM_STRAND	tot_cov=162/137
RA	1160	.	NC_007779	224901	2	.	A	bias_e_value=697614	bias_p_value=0.150143	fisher_strand_p_value=0.501829	frequency=6.689072e-03	genotype_quality=930.0	ks_quality_p_value=0.0684459	log10_base_likelihood=-7.71919	log10_qual_likelihood_position_model=1.47713	log10_strand_likelihood_position_model=0.533547	new_cov=2/0	polymorphism_quality=2.2	quality=2.2	quality_position_model=1.27686e-07	ref_cov=160/137	reject=POLYMORPHISM_STRAND	tot_cov=162/137
RA	1161	.	NC_007779	224902	1	.	A	bias_e_value=1984400	bias_p_value=0.427089	fisher_strand_p_value=0.279883	frequency=2.449007e-01	genotype_quality=753.6	ks_quality_p_value=0.521951	log10_base_likelihood=-388.691	log10_qual_likelihood_position_model=15.5392	log10_strand_likelihood_position_model=1.22692	new_cov=43/29	polymorphism_quality=inf	quality=inf	quality_position_model=0	ref_cov=116/106	tot_cov=159/135
RA	1162	.	NC_007779	224903	0	G	C	bias_e_value=2186050	bias_p_value=0.47049	fisher_strand_p_value=0.22354	frequency=2.503581e-01	genotype_quality=744.3	ks_quality_p_value=0.758619	log10_base_likelihood=-258.957	log10_qual_likelihood_position_model=11.4464	log10_strand_likelihood_position_model=1.323	new_cov=44/29	polymorphism_quality=254.2	quality=254.2	quality_position_model=6.67579e-249	ref_cov=113/106	tot_cov=159/135
RA	1163	.	NC_007779	224903	1	.	C	bias_e_value=1354220	bias_p_value=0.291461	fisher_strand_p_value=0.501637	frequency=6.802559e-03	genotype_quality=899.9	ks_quality_p_value=0.166968	log10_base_likelihood=-7.77851	log10_qual_likelihood_position_model=1.31675	log10_strand_likelihood_position_model=0.535161	new_cov=2/0	polymorphism_quality=2.3	quality=2.3	quality_position_model=7.59332e-08	ref_cov=157/135	reject=POLYMORPHISM_STRAND	tot_cov=159/135
RA	1164	.	NC_007779	224906	0	C	T	bias_e_value=1636760	bias_p_value=0.352269	fisher_strand_p_value=0.136893	frequency=2.720003e-01	genotype_quality=643.1	ks_quality_p_value=0.80179	log10_base_likelihood=-227.149	log10_qual_likelihood_position_model=11.9837	log10_strand_likelihood_position_model=1.47073	new_cov=46/29	polymorphism_quality=222.4	quality=222.4	quality_position_model=2.22923e-216	ref_cov=102/98	tot_cov=150/127
RA	1165	.	NC_007779	224907	0	C	G	bias_e_value=1464660	bias_p_value=0.315229	fisher_strand_p_value=0.172933	frequency=2.686825e-01	genotype_quality=669.2	ks_quality_p_value=0.541046	log10_base_likelihood=-269.222	log10_qual_likelihood_position_model=14.1439	log10_strand_likelihood_position_model=1.41396	new_cov=45/29	polymorphism_quality=264.5	quality=264.5	quality_position_model=2.19501e-256	ref_cov=102/98	tot_cov=149/127
RA	1166	.	NC_007779	224908	0	G	T	bias_e_value=2237800	bias_p_value=0.481628	fisher_strand_p_value=0.175924	frequency=2.678380e-01	genotype_quality=683.4	ks_quality_p_value=1	log10_base_likelihood=-227.811	log10_qual_likelihood_position_model=23.9818	log10_strand_likelihood_position_model=1.37208	new_cov=45/29	polymorphism_quality=223.1	quality=223.1	quality_position_model=3.95649e-205	ref_cov=104/98	tot_cov=149/127
RA	1167	.	NC_007779	224910	0	C	G	bias_e_value=1923950	bias_p_value=0.414079	fisher_strand_p_value=0.173821	frequency=2.702088e-01	genotype_quality=665.9	ks_quality_p_value=0.801986	log10_base_likelihood=-263.752	log10_qual_likelihood_position_model=14.0434	log10_strand_likelihood_position_model=1.38982	new_cov=45/29	polymorphism_quality=259.0	quality=259.0	quality_position_model=4.91396e-251	ref_cov=102/97	tot_cov=149/127
RA	1168	.	NC_007779	224911	0	C	T	bias_e_value=2213530	bias_p_value=0.476404	fisher_strand_p_value=0.172933	frequency=2.682457e-01	genotype_quality=656.4	ks_quality_p_value=1	log10_base_likelihood=-195.022	log10_qual_likelihood_position_model=35.3515	log10_strand_likelihood_position_model=1.41396	new_cov=45/29	polymorphism_quality=190.2	quality=190.2	quality_position_model=7.09989e-161	ref_cov=102/98	tot_cov=149/127
RA	1169	.	NC_007779	224915	0	A	G	bias_e_value=466123	bias_p_value=0.100321	fisher_strand_p_value=0.135745	frequency=2.719007e-01	genotype_quality=617.1	ks_quality_p_value=0.151265	log10_base_likelihood=-237.162	log10_qual_likelihood_position_model=17.6049	log10_strand_likelihood_position_model=1.45868	new_cov=45/29	polymorphism_quality=232.4	quality=232.4	quality_position_model=8.70899999999999e-221	ref_cov=100/98	tot_cov=147/127
RA	1170	.	NC_007779	224920	0	A	G	bias_e_value=1560130	bias_p_value=0.335777	fisher_strand_p_value=0.102735	frequency=2.922730e-01	genotype_quality=583.9	ks_quality_p_value=0.996828	log10_base_likelihood=-245.14	log10_qual_likelihood_position_model=16.7992	log10_strand_likelihood_position_model=1.55873	new_cov=47/29	polymorphism_quality=240.4	quality=240.4	quality_position_model=1.76947e-229	ref_cov=93/91	tot_cov=140/120
RA	1171	.	NC_007779	224921	0	A	T	bias_e_value=1244340	bias_p_value=0.267811	fisher_strand_p_value=0.0744377	frequency=2.894812e-01	genotype_quality=603.3	ks_quality_p_value=1	log10_base_likelihood=-256.069	log10_qual_likelihood_position_model=19.8666	log10_strand_likelihood_position_model=1.70361	new_cov=47/28	polymorphism_quality=251.3	quality=251.3	quality_position_model=3.34073e-237	ref_cov=92/92	tot_cov=139/120
RA	1172	.	NC_007779	224923	0	G	A	bias_e_value=1832440	bias_p_value=0.394384	fisher_strand_p_value=0.129586	frequency=3.014064e-01	genotype_quality=573.2	ks_quality_p_value=1	log10_base_likelihood=-229.253	log10_qual_likelihood_position_model=17.1525	log10_strand_likelihood_position_model=1.54554	new_cov=47/29	polymorphism_quality=224.5	quality=224.5	quality_position_model=3.09745e-213	ref_cov=89/87	tot_cov=136/116
RA	1173	.	NC_007779	224926	0	G	A	bias_e_value=1384870	bias_p_value=0.298056	fisher_strand_p_value=0.128527	frequency=3.076115e-01	genotype_quality=543.4	ks_quality_p_value=0.672495	log10_base_likelihood=-232.643	log10_qual_likelihood_position_model=15.073	log10_strand_likelihood_position_model=1.50717	new_cov=47/29	polymorphism_quality=227.9	quality=227.9	quality_position_model=9.49721e-219	ref_cov=87/84	reject=SURROUNDING_HOMOPOLYMER	tot_cov=134/113
RA	1174	.	NC_007779	224933	0	A	G	bias_e_value=35176.2	bias_p_value=0.00757074	fisher_strand_p_value=0.000951386	frequency=2.816949e-01	genotype_quality=513.7	ks_quality_p_value=1	log10_base_likelihood=-194.931	log10_qual_likelihood_position_model=16.5316	log10_strand_likelihood_position_model=3.32944	new_cov=47/16	polymorphism_quality=190.1	quality=190.1	quality_position_model=1.03748e-177	ref_cov=80/79	reject=FISHER_STRAND_P_VALUE	tot_cov=127/108
RA	1175	.	NC_007779	224935	0	T	G	bias_e_value=2804.94	bias_p_value=0.000603688	fisher_strand_p_value=0.0923016	frequency=3.277044e-01	genotype_quality=471.0	ks_quality_p_value=0.000606086	log10_base_likelihood=-302.921	log10_qual_likelihood_position_model=23.1263	log10_strand_likelihood_position_model=1.64287	new_cov=47/29	polymorphism_quality=298.2	quality=298.2	quality_position_model=6.82063e-281	ref_cov=77/79	reject=KS_QUALITY_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=124/108
RA	1176	.	NC_007779	224937	0	A	T	bias_e_value=47716.7	bias_p_value=0.0102698	fisher_strand_p_value=0.00134991	frequency=2.860203e-01	genotype_quality=492.1	ks_quality_p_value=1	log10_base_likelihood=-178.042	log10_qual_likelihood_position_model=35.1697	log10_strand_likelihood_position_model=3.19844	new_cov=47/16	polymorphism_quality=173.2	quality=173.2	quality_position_model=2.89053e-142	ref_cov=74/72	tot_cov=121/101
RA	1177	.	NC_007779	224939	0	A	T	bias_e_value=0.419647	bias_p_value=9.03179e-08	fisher_strand_p_value=2.05509e-05	frequency=6.188679e-02	genotype_quality=520.0	ks_quality_p_value=0.000217277	log10_base_likelihood=-40.1668	log10_qual_likelihood_position_model=8.14735	log10_strand_likelihood_position_model=4.68717	new_cov=0/13	polymorphism_quality=35.0	quality=35.0	quality_position_model=1.42593e-29	ref_cov=115/82	reject=POLYMORPHISM_STRAND,KS_QUALITY_P_VALUE,FISHER_STRAND_P_VALUE	tot_cov=115/95
RA	1178	.	NC_007779	224941	0	A	C	bias_e_value=6139.51	bias_p_value=0.00132137	fisher_strand_p_value=0.000151794	frequency=3.001022e-01	genotype_quality=449.0	ks_quality_p_value=0.87716	log10_base_likelihood=-253.371	log10_qual_likelihood_position_model=12.4077	log10_strand_likelihood_position_model=4.08914	new_cov=47/16	polymorphism_quality=248.6	quality=248.6	quality_position_model=1.40056e-239	ref_cov=68/79	reject=FISHER_STRAND_P_VALUE	tot_cov=115/95
RA	1179	.	NC_007779	224942	0	C	T	bias_e_value=6453.71	bias_p_value=0.00138899	fisher_strand_p_value=0.000140749	frequency=3.010807e-01	genotype_quality=456.5	ks_quality_p_value=1	log10_base_likelihood=-189.549	log10_qual_likelihood_position_model=17.2753	log10_strand_likelihood_position_model=4.16242	new_cov=47/16	polymorphism_quality=184.8	quality=184.8	quality_position_model=9.62707e-171	ref_cov=67/79	reject=FISHER_STRAND_P_VALUE	tot_cov=114/95
RA	1180	.	NC_007779	224943	0	T	C	bias_e_value=9800.31	bias_p_value=0.00210926	fisher_strand_p_value=0.0002348	frequency=2.992887e-01	genotype_quality=440.5	ks_quality_p_value=0.955417	log10_base_likelihood=-199.165	log10_qual_likelihood_position_model=10.7741	log10_strand_likelihood_position_model=3.95281	new_cov=46/16	polymorphism_quality=194.4	quality=194.4	quality_position_model=4.33039e-187	ref_cov=67/78	reject=FISHER_STRAND_P_VALUE	tot_cov=113/94
RA	1181	.	NC_007779	224943	1	.	C	bias_e_value=0.000201501	bias_p_value=4.33678e-11	fisher_strand_p_value=1.41012e-05	frequency=6.842136e-02	genotype_quality=458.5	ks_quality_p_value=1.09056e-07	log10_base_likelihood=-65.1539	log10_qual_likelihood_position_model=9.22296	log10_strand_likelihood_position_model=4.85074	new_cov=0/13	polymorphism_quality=60.1	quality=60.1	quality_position_model=1.87047e-53	ref_cov=106/71	reject=POLYMORPHISM_STRAND,KS_QUALITY_P_VALUE,FISHER_STRAND_P_VALUE	tot_cov=106/84
RA	1182	.	NC_007779	224968	0	G	A	bias_e_value=2454630	bias_p_value=0.528293	fisher_strand_p_value=0.212985	frequency=3.500681e-01	genotype_quality=203.1	ks_quality_p_value=0.957838	log10_base_likelihood=-109.512	log10_qual_likelihood_position_model=7.6266	log10_strand_likelihood_position_model=1.15134	new_cov=21/14	polymorphism_quality=104.6	quality=104.6	quality_position_model=2.96155e-103	ref_cov=30/35	tot_cov=51/49
RA	1183	.	NC_007779	227969	0	A	G	frequency=1	genotype_quality=0.7	new_cov=0/2	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	1184	.	NC_007779	227979	0	G	A	frequency=1	genotype_quality=0.7	new_cov=1/3	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/3
RA	1185	.	NC_007779	227980	0	C	G	frequency=1	genotype_quality=0.7	new_cov=1/3	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/3
RA	1186	.	NC_007779	227989	0	T	C	frequency=1	genotype_quality=0.7	new_cov=1/3	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/3
RA	1187	.	NC_007779	228004	0	G	A	frequency=1	genotype_quality=0.7	new_cov=15/5	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=15/5
RA	1188	.	NC_007779	228016	0	C	T	frequency=1	genotype_quality=0.7	new_cov=15/6	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=15/6
RA	1189	.	NC_007779	228017	0	T	G	frequency=1	genotype_quality=0.7	new_cov=15/6	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=15/6
RA	1190	.	NC_007779	228023	0	T	C	frequency=1	genotype_quality=0.7	new_cov=15/6	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=15/6
RA	1191	.	NC_007779	228039	0	A	C	frequency=1	genotype_quality=0.7	new_cov=15/6	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=15/6
RA	1192	.	NC_007779	228042	0	A	C	frequency=1	genotype_quality=0.7	new_cov=15/6	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=15/6
RA	1193	.	NC_007779	228044	0	G	A	frequency=1	genotype_quality=0.7	new_cov=15/6	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=15/6
RA	1194	.	NC_007779	228051	0	G	C	frequency=1	genotype_quality=0.7	new_cov=15/6	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=15/6
RA	1195	.	NC_007779	228052	0	G	C	frequency=1	genotype_quality=0.7	new_cov=15/6	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=15/6
RA	1196	.	NC_007779	228055	0	A	C	frequency=1	genotype_quality=0.7	new_cov=15/6	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=15/6
RA	1197	.	NC_007779	228057	0	T	G	frequency=1	genotype_quality=0.7	new_cov=15/6	quality=0.7	ref_cov=0/0	reject=EVALUE	tot_cov=15/6
RA	1198	.	NC_007779	228063	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=14/4	reject=EVALUE	tot_cov=14/4
RA	1199	.	NC_007779	228064	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=14/4
RA	1200	.	NC_007779	228065	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=14/3	reject=EVALUE	tot_cov=14/3
RA	1201	.	NC_007779	228066	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=14/3	reject=EVALUE	tot_cov=14/3
RA	1202	.	NC_007779	228068	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=14/3	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=14/3
RA	1203	.	NC_007779	228070	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=14/3	reject=EVALUE	tot_cov=14/3
RA	1204	.	NC_007779	228071	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=14/3	reject=EVALUE	tot_cov=14/3
RA	1205	.	NC_007779	228073	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=14/3	reject=EVALUE	tot_cov=14/3
RA	1206	.	NC_007779	228074	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=14/3	reject=EVALUE	tot_cov=14/3
RA	1207	.	NC_007779	228076	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=14/3	reject=EVALUE	tot_cov=14/3
RA	1208	.	NC_007779	228077	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=14/3
RA	1209	.	NC_007779	228078	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=14/3	reject=EVALUE	tot_cov=14/3
RA	1210	.	NC_007779	228079	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=14/3
RA	1211	.	NC_007779	228081	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=14/3	reject=EVALUE	tot_cov=14/3
RA	1212	.	NC_007779	228082	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=14/3	reject=EVALUE	tot_cov=14/3
RA	1213	.	NC_007779	228083	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=14/3	reject=EVALUE	tot_cov=14/3
RA	1214	.	NC_007779	228084	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=13/3
RA	1215	.	NC_007779	228087	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=4/1
RA	1216	.	NC_007779	228088	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=4/1
RA	1217	.	NC_007779	228089	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=4/1	reject=EVALUE	tot_cov=4/1
RA	1218	.	NC_007779	228090	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=4/1	reject=EVALUE	tot_cov=4/1
RA	1219	.	NC_007779	228092	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=4/1
RA	1220	.	NC_007779	228095	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	1221	.	NC_007779	228096	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1222	.	NC_007779	228097	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1223	.	NC_007779	228099	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	1224	.	NC_007779	228100	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	1225	.	NC_007779	228101	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	1226	.	NC_007779	228102	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	1227	.	NC_007779	228103	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	1228	.	NC_007779	228105	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	1229	.	NC_007779	228106	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	1230	.	NC_007779	228852	0	C	A	frequency=1	genotype_quality=-0.1	new_cov=1/0	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1231	.	NC_007779	233118	0	T	C	bias_e_value=25.1285	bias_p_value=5.40826e-06	fisher_strand_p_value=3.40281e-07	frequency=6.210184e-02	genotype_quality=465.8	ks_quality_p_value=1	log10_base_likelihood=-9.62147	log10_qual_likelihood_position_model=12.0241	log10_strand_likelihood_position_model=6.47283	new_cov=1/8	polymorphism_quality=4.2	quality=4.2	quality_position_model=Inf	ref_cov=112/11	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=113/19
RA	1232	.	NC_007779	252970	0	A	C	bias_e_value=2.68863e-10	bias_p_value=5.78656e-17	fisher_strand_p_value=1.37353e-18	frequency=1.033559e-01	genotype_quality=534.9	ks_quality_p_value=1	log10_base_likelihood=-7.70478	log10_qual_likelihood_position_model=33.4811	log10_strand_likelihood_position_model=17.8622	new_cov=0/44	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=116/54	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=116/99
RA	1233	.	NC_007779	265564	0	T	G	bias_e_value=0.030121	bias_p_value=6.48274e-09	fisher_strand_p_value=2.81992e-10	frequency=6.859875e-02	genotype_quality=520.2	ks_quality_p_value=1	log10_base_likelihood=-5.64343	log10_qual_likelihood_position_model=20.7353	log10_strand_likelihood_position_model=9.54976	new_cov=26/0	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=60/97	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=86/97
RA	1234	.	NC_007779	274547	0	A	G	frequency=1	genotype_quality=870.5	new_cov=93/114	quality=870.5	ref_cov=0/0	tot_cov=93/114
RA	1235	.	NC_007779	329646	0	G	A	deleted=1	frequency=1	genotype_quality=33.9	new_cov=2/7	quality=33.9	ref_cov=0/0	tot_cov=2/7
RA	1236	.	NC_007779	329647	0	C	A	deleted=1	frequency=1	genotype_quality=33.6	new_cov=2/7	quality=33.6	ref_cov=0/0	tot_cov=2/7
RA	1237	.	NC_007779	329654	0	T	A	deleted=1	frequency=1	genotype_quality=32.1	new_cov=2/7	quality=32.1	ref_cov=0/0	tot_cov=2/7
RA	1238	.	NC_007779	329661	0	A	C	deleted=1	frequency=1	genotype_quality=61.7	new_cov=5/11	quality=61.7	ref_cov=0/0	tot_cov=5/11
RA	1239	.	NC_007779	329668	0	G	A	deleted=1	frequency=1	genotype_quality=63.2	new_cov=5/11	quality=63.2	ref_cov=0/0	tot_cov=5/11
RA	1240	.	NC_007779	329670	0	G	T	deleted=1	frequency=1	genotype_quality=62.9	new_cov=5/11	quality=62.9	ref_cov=0/0	tot_cov=5/11
RA	1241	.	NC_007779	329671	0	G	T	deleted=1	frequency=1	genotype_quality=61.9	new_cov=5/11	quality=61.9	ref_cov=0/0	tot_cov=5/11
RA	1242	.	NC_007779	329673	0	A	C	deleted=1	frequency=1	genotype_quality=63.7	new_cov=5/11	quality=63.7	ref_cov=0/0	tot_cov=5/11
RA	1243	.	NC_007779	329691	0	C	T	deleted=1	frequency=1	genotype_quality=59.4	new_cov=5/11	quality=59.4	ref_cov=0/0	tot_cov=5/11
RA	1244	.	NC_007779	329692	0	T	A	deleted=1	frequency=1	genotype_quality=59.7	new_cov=5/11	quality=59.7	ref_cov=0/0	tot_cov=5/11
RA	1245	.	NC_007779	329698	0	C	A	deleted=1	frequency=1	genotype_quality=59.3	new_cov=5/11	quality=59.3	ref_cov=0/0	tot_cov=5/11
RA	1246	.	NC_007779	329700	0	G	C	deleted=1	frequency=1	genotype_quality=65.8	new_cov=5/11	quality=65.8	ref_cov=0/0	tot_cov=5/11
RA	1247	.	NC_007779	329703	0	G	A	deleted=1	frequency=1	genotype_quality=57.1	new_cov=5/11	quality=57.1	ref_cov=0/0	tot_cov=5/11
RA	1248	.	NC_007779	329709	0	C	T	deleted=1	frequency=1	genotype_quality=63.0	new_cov=5/11	quality=63.0	ref_cov=0/0	tot_cov=5/11
RA	1249	.	NC_007779	329712	0	G	T	deleted=1	frequency=1	genotype_quality=61.4	new_cov=5/11	quality=61.4	ref_cov=0/0	tot_cov=5/11
RA	1250	.	NC_007779	329715	0	T	C	deleted=1	frequency=1	genotype_quality=68.0	new_cov=5/11	quality=68.0	ref_cov=0/0	tot_cov=5/11
RA	1251	.	NC_007779	329718	0	G	C	deleted=1	frequency=1	genotype_quality=68.2	new_cov=5/11	quality=68.2	ref_cov=0/0	tot_cov=5/11
RA	1252	.	NC_007779	329724	0	C	T	deleted=1	frequency=1	genotype_quality=64.0	new_cov=5/11	quality=64.0	ref_cov=0/0	tot_cov=5/11
RA	1253	.	NC_007779	329727	0	T	C	deleted=1	frequency=1	genotype_quality=67.5	new_cov=5/11	quality=67.5	ref_cov=0/0	tot_cov=5/11
RA	1254	.	NC_007779	329730	0	C	T	deleted=1	frequency=1	genotype_quality=62.1	new_cov=5/11	quality=62.1	ref_cov=0/0	tot_cov=5/11
RA	1255	.	NC_007779	329731	0	C	G	deleted=1	frequency=1	genotype_quality=65.3	new_cov=5/11	quality=65.3	ref_cov=0/0	tot_cov=5/11
RA	1256	.	NC_007779	330822	0	A	T	deleted=1	frequency=1	genotype_quality=0.9	new_cov=0/1	quality=0.9	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1257	.	NC_007779	365514	0	C	T	deleted=1	frequency=1	genotype_quality=4.0	new_cov=1/0	quality=4.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1258	.	NC_007779	365524	0	G	.	deleted=1	frequency=1	genotype_quality=4.4	new_cov=1/0	quality=4.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1259	.	NC_007779	374799	0	T	G	bias_e_value=7.36613e-17	bias_p_value=1.58536e-23	fisher_strand_p_value=2.7547e-25	frequency=1.209888e-01	genotype_quality=456.7	ks_quality_p_value=1	log10_base_likelihood=-11.5165	log10_qual_likelihood_position_model=30.5414	log10_strand_likelihood_position_model=24.5599	new_cov=31/0	polymorphism_quality=6.1	quality=6.1	quality_position_model=Inf	ref_cov=10/125	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=41/125
RA	1260	.	NC_007779	379237	0	G	.	bias_e_value=2158480	bias_p_value=0.464555	fisher_strand_p_value=0.625185	frequency=2.579689e-02	genotype_quality=621.6	ks_quality_p_value=0.265929	log10_base_likelihood=-11.9599	log10_qual_likelihood_position_model=3.31418	log10_strand_likelihood_position_model=0.484175	new_cov=2/2	polymorphism_quality=6.6	quality=6.6	quality_position_model=3.80017e-10	ref_cov=96/55	reject=INDEL_HOMOPOLYMER	tot_cov=98/57
RA	1261	.	NC_007779	387560	0	A	C	bias_e_value=5.00151e-09	bias_p_value=1.07644e-15	fisher_strand_p_value=2.75079e-17	frequency=1.038537e-01	genotype_quality=592.1	ks_quality_p_value=1	log10_base_likelihood=-11.9819	log10_qual_likelihood_position_model=29.2987	log10_strand_likelihood_position_model=16.5605	new_cov=0/37	polymorphism_quality=6.6	quality=6.6	quality_position_model=Inf	ref_cov=126/52	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=126/89
RA	1262	.	NC_007779	387917	0	T	G	bias_e_value=9.38125	bias_p_value=2.01907e-06	fisher_strand_p_value=1.1917e-07	frequency=8.027315e-02	genotype_quality=368.9	ks_quality_p_value=1	log10_base_likelihood=-14.5452	log10_qual_likelihood_position_model=13.5662	log10_strand_likelihood_position_model=6.93409	new_cov=3/10	polymorphism_quality=9.2	quality=9.2	quality_position_model=Inf	ref_cov=103/9	reject=FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=106/19
RA	1263	.	NC_007779	387919	0	A	G	bias_e_value=0.157049	bias_p_value=3.38006e-08	fisher_strand_p_value=1.5899e-09	frequency=6.750679e-02	genotype_quality=388.2	ks_quality_p_value=1	log10_base_likelihood=-11.9373	log10_qual_likelihood_position_model=10.2479	log10_strand_likelihood_position_model=8.79863	new_cov=0/9	polymorphism_quality=6.5	quality=6.5	quality_position_model=Inf	ref_cov=108/8	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=108/17
RA	1264	.	NC_007779	418928	0	C	G	bias_e_value=20.2803	bias_p_value=4.3648e-06	fisher_strand_p_value=2.70733e-07	frequency=7.554436e-02	genotype_quality=420.8	ks_quality_p_value=1	log10_base_likelihood=-9.29997	log10_qual_likelihood_position_model=10.2813	log10_strand_likelihood_position_model=6.56746	new_cov=11/0	polymorphism_quality=3.8	quality=3.8	quality_position_model=Inf	ref_cov=24/88	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=35/88
RA	1265	.	NC_007779	432858	0	T	G	bias_e_value=1.92155e-07	bias_p_value=4.13562e-14	fisher_strand_p_value=1.16882e-15	frequency=1.346650e-01	genotype_quality=464.2	ks_quality_p_value=1	log10_base_likelihood=-14.2274	log10_qual_likelihood_position_model=26.7812	log10_strand_likelihood_position_model=14.9532	new_cov=49/0	polymorphism_quality=8.9	quality=8.9	quality_position_model=Inf	ref_cov=65/90	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=114/90
RA	1266	.	NC_007779	440767	0	G	T	bias_e_value=0.0273034	bias_p_value=5.87633e-09	fisher_strand_p_value=2.54477e-10	frequency=1.009870e-01	genotype_quality=716.2	ks_quality_p_value=1	log10_base_likelihood=-22.2595	log10_qual_likelihood_position_model=19.9915	log10_strand_likelihood_position_model=9.59435	new_cov=0/27	polymorphism_quality=17.0	quality=17.0	quality_position_model=Inf	ref_cov=121/82	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=121/111
RA	1267	.	NC_007779	450484	0	G	T	bias_e_value=161.985	bias_p_value=3.48631e-05	fisher_strand_p_value=2.71293e-06	frequency=3.882217e-02	genotype_quality=689.1	ks_quality_p_value=0.9248	log10_base_likelihood=-7.76544	log10_qual_likelihood_position_model=14.9038	log10_strand_likelihood_position_model=5.56656	new_cov=10/0	polymorphism_quality=2.3	quality=2.3	quality_position_model=Inf	ref_cov=48/139	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=58/139
RA	1268	.	NC_007779	457333	0	T	C	bias_e_value=2532520	bias_p_value=0.545057	fisher_strand_p_value=0.217681	frequency=2.472401e-02	genotype_quality=894.4	ks_quality_p_value=0.986418	log10_base_likelihood=-11.6917	log10_qual_likelihood_position_model=5.78626	log10_strand_likelihood_position_model=0.938274	new_cov=1/5	polymorphism_quality=6.3	quality=6.3	quality_position_model=7.50977e-07	ref_cov=112/122	reject=POLYMORPHISM_STRAND	tot_cov=114/127
RA	1269	.	NC_007779	457336	0	A	G	bias_e_value=2418750	bias_p_value=0.520571	fisher_strand_p_value=0.219218	frequency=2.511692e-02	genotype_quality=900.9	ks_quality_p_value=0.908608	log10_base_likelihood=-12.147	log10_qual_likelihood_position_model=3.44326	log10_strand_likelihood_position_model=0.923992	new_cov=1/5	polymorphism_quality=6.8	quality=6.8	quality_position_model=9.36467e-10	ref_cov=110/122	reject=POLYMORPHISM_STRAND	tot_cov=111/127
RA	1270	.	NC_007779	457338	0	A	T	bias_e_value=2324770	bias_p_value=0.500345	fisher_strand_p_value=0.221417	frequency=2.426720e-02	genotype_quality=949.6	ks_quality_p_value=0.844056	log10_base_likelihood=-14.9501	log10_qual_likelihood_position_model=3.46872	log10_strand_likelihood_position_model=0.908324	new_cov=1/5	polymorphism_quality=9.6	quality=9.6	quality_position_model=1.30151e-12	ref_cov=113/128	reject=POLYMORPHISM_STRAND	tot_cov=114/133
RA	1271	.	NC_007779	457339	0	T	G	bias_e_value=2465230	bias_p_value=0.530575	fisher_strand_p_value=0.221508	frequency=2.447987e-02	genotype_quality=940.6	ks_quality_p_value=0.927479	log10_base_likelihood=-16.6964	log10_qual_likelihood_position_model=4.26693	log10_strand_likelihood_position_model=0.907388	new_cov=1/5	polymorphism_quality=11.4	quality=11.4	quality_position_model=1.40418e-13	ref_cov=112/127	reject=POLYMORPHISM_STRAND	tot_cov=113/132
RA	1272	.	NC_007779	457343	0	C	A	bias_e_value=2233860	bias_p_value=0.480778	fisher_strand_p_value=0.222226	frequency=2.591705e-02	genotype_quality=946.0	ks_quality_p_value=0.789448	log10_base_likelihood=-15.2647	log10_qual_likelihood_position_model=3.43487	log10_strand_likelihood_position_model=0.900405	new_cov=1/5	polymorphism_quality=9.9	quality=9.9	quality_position_model=5.63817e-13	ref_cov=105/120	reject=POLYMORPHISM_STRAND	tot_cov=106/125
RA	1273	.	NC_007779	457345	0	G	C	bias_e_value=2225340	bias_p_value=0.478946	fisher_strand_p_value=0.225753	frequency=2.629948e-02	genotype_quality=929.2	ks_quality_p_value=0.772457	log10_base_likelihood=-15.9106	log10_qual_likelihood_position_model=4.28235	log10_strand_likelihood_position_model=0.878434	new_cov=1/5	polymorphism_quality=10.6	quality=10.6	quality_position_model=8.59442e-13	ref_cov=102/120	reject=POLYMORPHISM_STRAND	tot_cov=103/125
RA	1274	.	NC_007779	457351	0	A	G	bias_e_value=2548420	bias_p_value=0.548481	fisher_strand_p_value=0.217713	frequency=2.504253e-02	genotype_quality=912.9	ks_quality_p_value=0.996529	log10_base_likelihood=-11.2545	log10_qual_likelihood_position_model=4.82273	log10_strand_likelihood_position_model=0.93754	new_cov=1/5	polymorphism_quality=5.8	quality=5.8	quality_position_model=2.12905e-07	ref_cov=111/121	reject=POLYMORPHISM_STRAND	tot_cov=112/126
RA	1275	.	NC_007779	457355	0	T	A	bias_e_value=2387010	bias_p_value=0.513741	fisher_strand_p_value=0.217817	frequency=2.583027e-02	genotype_quality=898.9	ks_quality_p_value=0.895143	log10_base_likelihood=-14.8521	log10_qual_likelihood_position_model=3.41125	log10_strand_likelihood_position_model=0.935268	new_cov=1/5	polymorphism_quality=9.5	quality=9.5	quality_position_model=1.52496e-12	ref_cov=108/118	reject=POLYMORPHISM_STRAND	tot_cov=109/123
RA	1276	.	NC_007779	457357	0	G	T	bias_e_value=2279780	bias_p_value=0.490663	fisher_strand_p_value=0.217117	frequency=2.584457e-02	genotype_quality=950.0	ks_quality_p_value=0.834427	log10_base_likelihood=-11.3665	log10_qual_likelihood_position_model=3.4037	log10_strand_likelihood_position_model=0.941911	new_cov=1/5	polymorphism_quality=6.0	quality=6.0	quality_position_model=5.64273e-09	ref_cov=108/117	reject=POLYMORPHISM_STRAND	tot_cov=109/122
RA	1277	.	NC_007779	457361	0	G	T	bias_e_value=2578210	bias_p_value=0.554892	fisher_strand_p_value=0.22139	frequency=2.616501e-02	genotype_quality=935.0	ks_quality_p_value=0.999052	log10_base_likelihood=-10.8122	log10_qual_likelihood_position_model=5.31905	log10_strand_likelihood_position_model=0.905685	new_cov=1/5	polymorphism_quality=5.4	quality=5.4	quality_position_model=1.86764e-06	ref_cov=104/118	reject=POLYMORPHISM_STRAND	tot_cov=105/123
RA	1278	.	NC_007779	457363	0	T	C	bias_e_value=2528470	bias_p_value=0.544187	fisher_strand_p_value=0.220564	frequency=2.653027e-02	genotype_quality=824.8	ks_quality_p_value=0.970963	log10_base_likelihood=-11.7164	log10_qual_likelihood_position_model=6.13624	log10_strand_likelihood_position_model=0.911137	new_cov=1/5	polymorphism_quality=6.3	quality=6.3	quality_position_model=1.53535e-06	ref_cov=103/116	reject=POLYMORPHISM_STRAND	tot_cov=104/121
RA	1279	.	NC_007779	457366	0	T	C	bias_e_value=2480610	bias_p_value=0.533885	fisher_strand_p_value=0.218608	frequency=2.572346e-02	genotype_quality=845.6	ks_quality_p_value=0.949378	log10_base_likelihood=-9.75259	log10_qual_likelihood_position_model=7.62344	log10_strand_likelihood_position_model=0.927891	new_cov=1/5	polymorphism_quality=4.3	quality=4.3	quality_position_model=0.00818579	ref_cov=107/118	reject=POLYMORPHISM_STRAND	tot_cov=108/123
RA	1280	.	NC_007779	457372	0	T	C	bias_e_value=2444040	bias_p_value=0.526016	fisher_strand_p_value=0.215852	frequency=2.680969e-02	genotype_quality=828.4	ks_quality_p_value=0.93849	log10_base_likelihood=-12.3861	log10_qual_likelihood_position_model=5.48537	log10_strand_likelihood_position_model=0.953591	new_cov=1/5	polymorphism_quality=7.0	quality=7.0	quality_position_model=7.23086e-08	ref_cov=105/112	reject=POLYMORPHISM_STRAND	tot_cov=106/117
RA	1281	.	NC_007779	457375	0	G	T	bias_e_value=2343690	bias_p_value=0.504418	fisher_strand_p_value=0.214184	frequency=2.713299e-02	genotype_quality=900.5	ks_quality_p_value=0.883941	log10_base_likelihood=-11.3924	log10_qual_likelihood_position_model=4.34557	log10_strand_likelihood_position_model=0.975301	new_cov=1/5	polymorphism_quality=6.0	quality=6.0	quality_position_model=5.37758e-08	ref_cov=105/109	reject=POLYMORPHISM_STRAND	tot_cov=106/114
RA	1282	.	NC_007779	457376	0	A	G	bias_e_value=2463920	bias_p_value=0.530294	fisher_strand_p_value=0.213013	frequency=2.728271e-02	genotype_quality=816.7	ks_quality_p_value=0.963634	log10_base_likelihood=-12.2758	log10_qual_likelihood_position_model=4.47021	log10_strand_likelihood_position_model=0.998347	new_cov=1/5	polymorphism_quality=6.9	quality=6.9	quality_position_model=9.36452e-09	ref_cov=106/107	reject=POLYMORPHISM_STRAND	tot_cov=107/112
RA	1283	.	NC_007779	457384	0	T	C	bias_e_value=2394890	bias_p_value=0.515437	fisher_strand_p_value=0.212416	frequency=2.685642e-02	genotype_quality=846.2	ks_quality_p_value=0.922797	log10_base_likelihood=-13.6461	log10_qual_likelihood_position_model=3.26749	log10_strand_likelihood_position_model=1.03012	new_cov=1/5	polymorphism_quality=8.3	quality=8.3	quality_position_model=2.31569e-11	ref_cov=110/107	reject=POLYMORPHISM_STRAND	tot_cov=111/112
RA	1284	.	NC_007779	457387	0	T	C	bias_e_value=311613	bias_p_value=0.0670664	fisher_strand_p_value=0.114402	frequency=2.674007e-02	genotype_quality=854.5	ks_quality_p_value=0.108847	log10_base_likelihood=-13.9855	log10_qual_likelihood_position_model=3.78989	log10_strand_likelihood_position_model=1.07018	new_cov=1/5	polymorphism_quality=8.6	quality=8.6	quality_position_model=3.91526e-11	ref_cov=113/105	reject=POLYMORPHISM_STRAND	tot_cov=114/110
RA	1285	.	NC_007779	457388	0	T	G	bias_e_value=354969	bias_p_value=0.0763977	fisher_strand_p_value=0.115657	frequency=2.763653e-02	genotype_quality=846.5	ks_quality_p_value=0.126414	log10_base_likelihood=-18.1072	log10_qual_likelihood_position_model=4.32041	log10_strand_likelihood_position_model=1.06319	new_cov=1/5	polymorphism_quality=12.8	quality=12.8	quality_position_model=8.41534e-15	ref_cov=109/102	reject=POLYMORPHISM_STRAND	tot_cov=110/107
RA	1286	.	NC_007779	457389	0	G	T	bias_e_value=294834	bias_p_value=0.0634552	fisher_strand_p_value=0.115741	frequency=2.724266e-02	genotype_quality=898.9	ks_quality_p_value=0.100528	log10_base_likelihood=-10.8738	log10_qual_likelihood_position_model=5.19133	log10_strand_likelihood_position_model=1.06286	new_cov=1/5	polymorphism_quality=5.5	quality=5.5	quality_position_model=1.72883e-06	ref_cov=110/103	reject=POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=111/108
RA	1287	.	NC_007779	457392	0	G	C	bias_e_value=114094	bias_p_value=0.0245558	fisher_strand_p_value=0.109937	frequency=2.688980e-02	genotype_quality=911.0	ks_quality_p_value=0.0338799	log10_base_likelihood=-17.0098	log10_qual_likelihood_position_model=3.31297	log10_strand_likelihood_position_model=1.09519	new_cov=1/5	polymorphism_quality=11.7	quality=11.7	quality_position_model=1.11959e-14	ref_cov=114/103	reject=POLYMORPHISM_STRAND	tot_cov=115/108
RA	1288	.	NC_007779	457414	0	T	G	bias_e_value=97041.2	bias_p_value=0.0208855	fisher_strand_p_value=0.0437894	frequency=1.825809e-02	genotype_quality=851.9	ks_quality_p_value=0.0703148	log10_base_likelihood=-11.5041	log10_qual_likelihood_position_model=3.79875	log10_strand_likelihood_position_model=1.35863	new_cov=0/4	polymorphism_quality=6.1	quality=6.1	quality_position_model=2.7948e-08	ref_cov=118/97	reject=POLYMORPHISM_STRAND	tot_cov=118/101
RA	1289	.	NC_007779	457417	0	A	G	bias_e_value=1003560	bias_p_value=0.215989	fisher_strand_p_value=0.094695	frequency=1.383877e-02	genotype_quality=847.5	ks_quality_p_value=0.586157	log10_base_likelihood=-6.01753	log10_qual_likelihood_position_model=1.89078	log10_strand_likelihood_position_model=1.02367	new_cov=0/3	polymorphism_quality=0.5	quality=0.5	quality_position_model=6.80492e-05	ref_cov=117/96	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=117/99
RA	1290	.	NC_007779	465801	0	C	A	bias_e_value=0.0260701	bias_p_value=5.6109e-09	fisher_strand_p_value=2.42873e-10	frequency=1.089153e-01	genotype_quality=519.0	ks_quality_p_value=0.998361	log10_base_likelihood=-22.8225	log10_qual_likelihood_position_model=19.7512	log10_strand_likelihood_position_model=9.61462	new_cov=0/19	polymorphism_quality=17.6	quality=17.6	quality_position_model=Inf	ref_cov=105/38	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=105/57
RA	1291	.	NC_007779	480442	1	.	G	bias_e_value=3891030	bias_p_value=0.837442	fisher_strand_p_value=0.497455	frequency=1.111031e-02	genotype_quality=879.2	ks_quality_p_value=0.979122	log10_base_likelihood=-7.56635	log10_qual_likelihood_position_model=3.031	log10_strand_likelihood_position_model=0.585296	new_cov=2/0	polymorphism_quality=2.1	quality=2.1	quality_position_model=8.67979e-06	ref_cov=90/88	reject=POLYMORPHISM_STRAND	tot_cov=92/88
RA	1292	.	NC_007779	492774	0	C	A	bias_e_value=3111.53	bias_p_value=0.000669675	fisher_strand_p_value=6.27225e-05	frequency=5.358934e-02	genotype_quality=641.8	ks_quality_p_value=1	log10_base_likelihood=-8.57574	log10_qual_likelihood_position_model=11.1001	log10_strand_likelihood_position_model=4.21682	new_cov=1/9	polymorphism_quality=3.1	quality=3.1	quality_position_model=Inf	ref_cov=122/41	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=123/50
RA	1293	.	NC_007779	497102	1	.	A	bias_e_value=1560950	bias_p_value=0.335953	fisher_strand_p_value=0.10305	frequency=1.469994e-02	genotype_quality=625.7	ks_quality_p_value=0.994528	log10_base_likelihood=-5.91029	log10_qual_likelihood_position_model=3.96284	log10_strand_likelihood_position_model=0.986952	new_cov=0/2	polymorphism_quality=0.4	quality=0.4	quality_position_model=0.0156764	ref_cov=92/42	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=92/44
RA	1294	.	NC_007779	503058	0	T	C	bias_e_value=0.000123451	bias_p_value=2.65696e-11	fisher_strand_p_value=9.25497e-13	frequency=1.087971e-01	genotype_quality=548.7	ks_quality_p_value=1	log10_base_likelihood=-12.8192	log10_qual_likelihood_position_model=23.0638	log10_strand_likelihood_position_model=12.0336	new_cov=0/26	polymorphism_quality=7.4	quality=7.4	quality_position_model=Inf	ref_cov=112/46	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=112/72
RA	1295	.	NC_007779	513848	0	A	C	bias_e_value=1.06227e-11	bias_p_value=2.28625e-18	fisher_strand_p_value=5.03181e-20	frequency=1.165380e-01	genotype_quality=505.4	ks_quality_p_value=1	log10_base_likelihood=-19.2596	log10_qual_likelihood_position_model=28.2418	log10_strand_likelihood_position_model=19.2983	new_cov=0/32	polymorphism_quality=14.0	quality=14.0	quality_position_model=Inf	ref_cov=124/26	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=124/58
RA	1296	.	NC_007779	519615	0	T	G	bias_e_value=6.64374	bias_p_value=1.42989e-06	fisher_strand_p_value=8.26088e-08	frequency=7.135391e-02	genotype_quality=578.2	ks_quality_p_value=1	log10_base_likelihood=-9.51034	log10_qual_likelihood_position_model=18.3393	log10_strand_likelihood_position_model=7.08297	new_cov=18/0	polymorphism_quality=4.1	quality=4.1	quality_position_model=Inf	ref_cov=64/108	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=82/108
RA	1297	.	NC_007779	522430	1	.	T	bias_e_value=4621430	bias_p_value=0.99464	fisher_strand_p_value=1	frequency=1.704502e-02	genotype_quality=848.3	ks_quality_p_value=0.898268	log10_base_likelihood=-13.0863	log10_qual_likelihood_position_model=1.41741	log10_strand_likelihood_position_model=0.37553	new_cov=2/1	polymorphism_quality=7.7	quality=7.7	quality_position_model=2.40073e-13	ref_cov=98/75	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=100/76
RA	1298	.	NC_007779	524490	0	T	G	bias_e_value=4.74038e-07	bias_p_value=1.02024e-13	fisher_strand_p_value=2.96124e-15	frequency=1.233377e-01	genotype_quality=511.9	ks_quality_p_value=1	log10_base_likelihood=-17.4187	log10_qual_likelihood_position_model=24.0385	log10_strand_likelihood_position_model=14.5285	new_cov=28/0	polymorphism_quality=12.1	quality=12.1	quality_position_model=Inf	ref_cov=38/119	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=66/119
RA	1299	.	NC_007779	527270	0	A	C	bias_e_value=0.405102	bias_p_value=8.71875e-08	fisher_strand_p_value=4.30257e-09	frequency=8.280230e-02	genotype_quality=432.4	ks_quality_p_value=1	log10_base_likelihood=-9.06524	log10_qual_likelihood_position_model=17.0178	log10_strand_likelihood_position_model=8.36627	new_cov=0/17	polymorphism_quality=3.6	quality=3.6	quality_position_model=Inf	ref_cov=94/36	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=94/54
RA	1300	.	NC_007779	535125	0	T	G	bias_e_value=3.1789e-05	bias_p_value=6.84175e-12	fisher_strand_p_value=2.27203e-13	frequency=8.688545e-02	genotype_quality=497.4	ks_quality_p_value=1	log10_base_likelihood=-10.8942	log10_qual_likelihood_position_model=22.1962	log10_strand_likelihood_position_model=12.9446	new_cov=37/0	polymorphism_quality=5.5	quality=5.5	quality_position_model=Inf	ref_cov=62/99	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=99/99
RA	1301	.	NC_007779	535142	0	A	G	bias_e_value=3.79048	bias_p_value=8.158e-07	fisher_strand_p_value=4.55649e-08	frequency=7.270813e-02	genotype_quality=524.8	ks_quality_p_value=1	log10_base_likelihood=-7.16093	log10_qual_likelihood_position_model=13.3709	log10_strand_likelihood_position_model=7.34137	new_cov=17/0	polymorphism_quality=1.7	quality=1.7	quality_position_model=Inf	ref_cov=50/100	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=67/100
RA	1302	.	NC_007779	547694	0	A	G	frequency=1	genotype_quality=1011.0	new_cov=123/126	quality=1011.0	ref_cov=0/0	tot_cov=123/126
RA	1303	.	NC_007779	547831	1	.	G	frequency=1	genotype_quality=872.4	new_cov=101/111	quality=872.4	ref_cov=0/0	tot_cov=101/111
RA	1304	.	NC_007779	556653	0	A	C	bias_e_value=4.63893e-07	bias_p_value=9.98407e-14	fisher_strand_p_value=2.896e-15	frequency=6.720638e-02	genotype_quality=505.6	ks_quality_p_value=1	log10_base_likelihood=-6.9373	log10_qual_likelihood_position_model=20.5271	log10_strand_likelihood_position_model=14.5382	new_cov=0/19	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=127/17	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=127/36
RA	1305	.	NC_007779	556858	0	A	T	frequency=1	genotype_quality=911.7	new_cov=120/107	quality=911.7	ref_cov=0/0	tot_cov=120/108
RA	1306	.	NC_007779	569996	0	G	C	frequency=1	genotype_quality=807.5	new_cov=95/94	quality=807.5	ref_cov=0/0	tot_cov=96/94
RA	1307	.	NC_007779	589157	0	T	G	bias_e_value=7.44661e-14	bias_p_value=1.60269e-20	fisher_strand_p_value=3.17351e-22	frequency=1.176190e-01	genotype_quality=492.9	ks_quality_p_value=1	log10_base_likelihood=-9.30493	log10_qual_likelihood_position_model=36.0616	log10_strand_likelihood_position_model=21.4985	new_cov=38/0	polymorphism_quality=3.9	quality=3.9	quality_position_model=Inf	ref_cov=27/120	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=65/120
RA	1308	.	NC_007779	595481	0	T	G	bias_e_value=5.34384e-08	bias_p_value=1.15012e-14	fisher_strand_p_value=3.13392e-16	frequency=1.080613e-01	genotype_quality=511.7	ks_quality_p_value=1	log10_base_likelihood=-9.27039	log10_qual_likelihood_position_model=31.3686	log10_strand_likelihood_position_model=15.5442	new_cov=47/0	polymorphism_quality=3.8	quality=3.8	quality_position_model=Inf	ref_cov=66/101	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=114/101
RA	1309	.	NC_007779	596507	0	A	.	bias_e_value=4646320	bias_p_value=0.999998	fisher_strand_p_value=1	frequency=1.337814e-02	genotype_quality=894.9	ks_quality_p_value=0.998063	log10_base_likelihood=-7.75733	log10_qual_likelihood_position_model=2.33479	log10_strand_likelihood_position_model=0.416409	new_cov=2/1	polymorphism_quality=2.3	quality=2.3	quality_position_model=6.84044e-07	ref_cov=112/109	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=114/110
RA	1310	.	NC_007779	598799	0	T	G	bias_e_value=1.40588e-05	bias_p_value=3.02579e-12	fisher_strand_p_value=9.77437e-14	frequency=1.100044e-01	genotype_quality=376.1	ks_quality_p_value=1	log10_base_likelihood=-12.1584	log10_qual_likelihood_position_model=19.7351	log10_strand_likelihood_position_model=13.0099	new_cov=16/0	polymorphism_quality=6.8	quality=6.8	quality_position_model=Inf	ref_cov=10/98	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=26/98
RA	1311	.	NC_007779	598802	0	T	G	bias_e_value=0.0346586	bias_p_value=7.45934e-09	fisher_strand_p_value=3.26556e-10	frequency=7.524967e-02	genotype_quality=391.6	ks_quality_p_value=1	log10_base_likelihood=-7.01264	log10_qual_likelihood_position_model=15.4239	log10_strand_likelihood_position_model=9.48604	new_cov=12/0	polymorphism_quality=1.5	quality=1.5	quality_position_model=Inf	ref_cov=13/99	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=25/99
RA	1312	.	NC_007779	606688	0	T	.	bias_e_value=893756	bias_p_value=0.192357	fisher_strand_p_value=0.285481	frequency=1.233768e-02	genotype_quality=957.7	ks_quality_p_value=0.166528	log10_base_likelihood=-8.29719	log10_qual_likelihood_position_model=2.83622	log10_strand_likelihood_position_model=0.640673	new_cov=3/0	polymorphism_quality=2.8	quality=2.8	quality_position_model=1.06791e-06	ref_cov=146/94	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=149/94
RA	1313	.	NC_007779	606911	1	.	G	bias_e_value=26946.4	bias_p_value=0.0057995	fisher_strand_p_value=0.000870626	frequency=3.703690e-02	genotype_quality=881.2	ks_quality_p_value=0.806297	log10_base_likelihood=-32.4786	log10_qual_likelihood_position_model=2.12364	log10_strand_likelihood_position_model=3.06017	new_cov=7/0	polymorphism_quality=27.3	quality=27.3	quality_position_model=1.55552e-29	ref_cov=64/118	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,INDEL_HOMOPOLYMER	tot_cov=71/118
RA	1314	.	NC_007779	612991	0	C	G	bias_e_value=0.00058782	bias_p_value=1.26513e-10	fisher_strand_p_value=4.67012e-12	frequency=9.294128e-02	genotype_quality=495.0	ks_quality_p_value=1	log10_base_likelihood=-23.3355	log10_qual_likelihood_position_model=14.6945	log10_strand_likelihood_position_model=11.3307	new_cov=0/13	polymorphism_quality=18.1	quality=18.1	quality_position_model=Inf	ref_cov=113/11	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=113/24
RA	1315	.	NC_007779	616029	0	C	A	bias_e_value=0.470428	bias_p_value=1.01247e-07	fisher_strand_p_value=5.14785e-09	frequency=6.794405e-02	genotype_quality=646.4	ks_quality_p_value=0.978173	log10_base_likelihood=-12.7188	log10_qual_likelihood_position_model=18.2081	log10_strand_likelihood_position_model=8.28837	new_cov=0/15	polymorphism_quality=7.3	quality=7.3	quality_position_model=Inf	ref_cov=133/44	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=133/59
RA	1316	.	NC_007779	625345	0	A	.	bias_e_value=3781740	bias_p_value=0.81392	fisher_strand_p_value=1	frequency=1.243973e-02	genotype_quality=943.9	ks_quality_p_value=0.455797	log10_base_likelihood=-8.2234	log10_qual_likelihood_position_model=2.24867	log10_strand_likelihood_position_model=0.388233	new_cov=2/1	polymorphism_quality=2.7	quality=2.7	quality_position_model=1.70821e-07	ref_cov=130/108	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=132/109
RA	1317	.	NC_007779	645484	0	A	C	bias_e_value=0.000150417	bias_p_value=3.23732e-11	fisher_strand_p_value=1.13575e-12	frequency=7.171917e-02	genotype_quality=681.4	ks_quality_p_value=1	log10_base_likelihood=-6.57777	log10_qual_likelihood_position_model=23.8772	log10_strand_likelihood_position_model=11.9447	new_cov=0/26	polymorphism_quality=1.1	quality=1.1	quality_position_model=Inf	ref_cov=141/62	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=142/88
RA	1318	.	NC_007779	645970	0	T	G	bias_e_value=9.91582e-13	bias_p_value=2.13412e-19	fisher_strand_p_value=4.45915e-21	frequency=1.817555e-01	genotype_quality=399.9	ks_quality_p_value=1	log10_base_likelihood=-44.8877	log10_qual_likelihood_position_model=27.1098	log10_strand_likelihood_position_model=20.3507	new_cov=30/0	polymorphism_quality=39.8	quality=39.8	quality_position_model=Inf	ref_cov=15/109	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=45/109
RA	1319	.	NC_007779	646440	0	C	A	bias_e_value=5.52375e-10	bias_p_value=1.18884e-16	fisher_strand_p_value=2.89411e-18	frequency=1.158624e-01	genotype_quality=491.1	ks_quality_p_value=0.992426	log10_base_likelihood=-46.3293	log10_qual_likelihood_position_model=15.8243	log10_strand_likelihood_position_model=17.5385	new_cov=0/16	polymorphism_quality=41.2	quality=41.2	quality_position_model=4.76646e-15	ref_cov=119/3	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=119/19
RA	1320	.	NC_007779	660356	0	T	G	bias_e_value=6.81076e-15	bias_p_value=1.46584e-21	fisher_strand_p_value=2.76881e-23	frequency=1.631842e-01	genotype_quality=424.4	ks_quality_p_value=1	log10_base_likelihood=-21.5446	log10_qual_likelihood_position_model=32.2265	log10_strand_likelihood_position_model=22.5577	new_cov=44/0	polymorphism_quality=16.3	quality=16.3	quality_position_model=Inf	ref_cov=28/109	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=73/109
RA	1321	.	NC_007779	665062	0	C	A	bias_e_value=0.260069	bias_p_value=5.5973e-08	fisher_strand_p_value=2.78649e-09	frequency=8.639812e-02	genotype_quality=564.2	ks_quality_p_value=0.968995	log10_base_likelihood=-14.6447	log10_qual_likelihood_position_model=19.1394	log10_strand_likelihood_position_model=8.55494	new_cov=0/17	polymorphism_quality=9.3	quality=9.3	quality_position_model=Inf	ref_cov=113/43	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=113/60
RA	1322	.	NC_007779	686495	0	A	C	bias_e_value=8.70143e-09	bias_p_value=1.87275e-15	fisher_strand_p_value=4.85626e-17	frequency=1.038103e-01	genotype_quality=616.7	ks_quality_p_value=1	log10_base_likelihood=-26.0662	log10_qual_likelihood_position_model=31.2827	log10_strand_likelihood_position_model=16.3181	new_cov=2/24	polymorphism_quality=20.8	quality=20.8	quality_position_model=Inf	ref_cov=157/20	reject=FISHER_STRAND_P_VALUE	tot_cov=159/44
RA	1323	.	NC_007779	687133	0	A	C	bias_e_value=0.630088	bias_p_value=1.3561e-07	fisher_strand_p_value=6.84928e-09	frequency=5.676603e-02	genotype_quality=581.4	ks_quality_p_value=1	log10_base_likelihood=-9.36989	log10_qual_likelihood_position_model=17.8563	log10_strand_likelihood_position_model=8.16436	new_cov=0/15	polymorphism_quality=3.9	quality=3.9	quality_position_model=Inf	ref_cov=127/43	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=127/59
RA	1324	.	NC_007779	688155	0	T	G	bias_e_value=0.000139303	bias_p_value=2.99812e-11	fisher_strand_p_value=1.04891e-12	frequency=6.798267e-02	genotype_quality=670.7	ks_quality_p_value=1	log10_base_likelihood=-11.2386	log10_qual_likelihood_position_model=34.0004	log10_strand_likelihood_position_model=11.9793	new_cov=32/0	polymorphism_quality=5.8	quality=5.8	quality_position_model=Inf	ref_cov=77/127	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=110/127
RA	1325	.	NC_007779	697558	1	.	T	bias_e_value=901757	bias_p_value=0.194079	fisher_strand_p_value=0.233312	frequency=1.041603e-02	genotype_quality=933.0	ks_quality_p_value=0.206192	log10_base_likelihood=-8.21521	log10_qual_likelihood_position_model=2.16293	log10_strand_likelihood_position_model=0.632064	new_cov=2/0	polymorphism_quality=2.7	quality=2.7	quality_position_model=2.5407e-07	ref_cov=91/99	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=93/99
RA	1326	.	NC_007779	704593	0	T	G	bias_e_value=1.36871e-07	bias_p_value=2.94579e-14	fisher_strand_p_value=8.24415e-16	frequency=7.468796e-02	genotype_quality=538.0	ks_quality_p_value=1	log10_base_likelihood=-9.00976	log10_qual_likelihood_position_model=23.2149	log10_strand_likelihood_position_model=15.0839	new_cov=28/0	polymorphism_quality=3.6	quality=3.6	quality_position_model=Inf	ref_cov=36/122	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=65/122
RA	1327	.	NC_007779	704668	0	T	G	bias_e_value=1.78199e-08	bias_p_value=3.83526e-15	fisher_strand_p_value=1.01388e-16	frequency=5.422449e-02	genotype_quality=562.9	ks_quality_p_value=1	log10_base_likelihood=-5.67459	log10_qual_likelihood_position_model=24.4338	log10_strand_likelihood_position_model=15.994	new_cov=22/0	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=22/142	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=44/142
RA	1328	.	NC_007779	706278	1	.	G	bias_e_value=901240	bias_p_value=0.193968	fisher_strand_p_value=0.0577628	frequency=1.183414e-02	genotype_quality=818.6	ks_quality_p_value=0.832202	log10_base_likelihood=-7.92912	log10_qual_likelihood_position_model=1.53307	log10_strand_likelihood_position_model=1.23835	new_cov=2/0	polymorphism_quality=2.4	quality=2.4	quality_position_model=4.75891e-07	ref_cov=39/128	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=41/128
RA	1329	.	NC_007779	706386	0	T	.	bias_e_value=828991	bias_p_value=0.178418	fisher_strand_p_value=0.251864	frequency=1.537514e-02	genotype_quality=771.9	ks_quality_p_value=0.170874	log10_base_likelihood=-8.36137	log10_qual_likelihood_position_model=4.33705	log10_strand_likelihood_position_model=0.799865	new_cov=3/0	polymorphism_quality=2.9	quality=2.9	quality_position_model=5.05813e-05	ref_cov=103/89	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=106/89
RA	1330	.	NC_007779	725797	0	G	A	bias_e_value=620264	bias_p_value=0.133495	fisher_strand_p_value=0.0305248	frequency=1.816273e-02	genotype_quality=867.3	ks_quality_p_value=0.966948	log10_base_likelihood=-6.48019	log10_qual_likelihood_position_model=3.5554	log10_strand_likelihood_position_model=1.51535	new_cov=0/4	polymorphism_quality=0.9	quality=0.9	quality_position_model=0.00473512	ref_cov=126/88	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=126/92
RA	1331	.	NC_007779	725799	0	T	C	bias_e_value=472945	bias_p_value=0.101789	fisher_strand_p_value=0.0281432	frequency=1.807308e-02	genotype_quality=811.5	ks_quality_p_value=0.743067	log10_base_likelihood=-7.35892	log10_qual_likelihood_position_model=3.1246	log10_strand_likelihood_position_model=1.55063	new_cov=0/4	polymorphism_quality=1.9	quality=1.9	quality_position_model=0.000190654	ref_cov=129/87	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=129/91
RA	1332	.	NC_007779	725800	0	A	C	bias_e_value=527315	bias_p_value=0.113491	fisher_strand_p_value=0.0252366	frequency=1.850128e-02	genotype_quality=822.1	ks_quality_p_value=0.950764	log10_base_likelihood=-9.92144	log10_qual_likelihood_position_model=2.64782	log10_strand_likelihood_position_model=1.59797	new_cov=0/4	polymorphism_quality=4.5	quality=4.5	quality_position_model=1.38096e-07	ref_cov=129/83	reject=POLYMORPHISM_STRAND	tot_cov=129/87
RA	1333	.	NC_007779	725803	0	G	A	bias_e_value=499886	bias_p_value=0.107587	fisher_strand_p_value=0.0252366	frequency=1.836395e-02	genotype_quality=858.7	ks_quality_p_value=0.888608	log10_base_likelihood=-6.79556	log10_qual_likelihood_position_model=3.86738	log10_strand_likelihood_position_model=1.59797	new_cov=0/4	polymorphism_quality=1.3	quality=1.3	quality_position_model=0.00582454	ref_cov=129/83	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=129/87
RA	1334	.	NC_007779	725806	0	G	C	bias_e_value=391049	bias_p_value=0.0841629	fisher_strand_p_value=0.0219605	frequency=1.920986e-02	genotype_quality=841.0	ks_quality_p_value=0.750688	log10_base_likelihood=-10.0254	log10_qual_likelihood_position_model=2.32831	log10_strand_likelihood_position_model=1.65836	new_cov=0/4	polymorphism_quality=4.6	quality=4.6	quality_position_model=5.81412e-08	ref_cov=127/77	reject=POLYMORPHISM_STRAND	tot_cov=127/81
RA	1335	.	NC_007779	725809	0	A	G	bias_e_value=425607	bias_p_value=0.0916006	fisher_strand_p_value=0.0219605	frequency=1.911736e-02	genotype_quality=783.3	ks_quality_p_value=0.834282	log10_base_likelihood=-7.33952	log10_qual_likelihood_position_model=4.55722	log10_strand_likelihood_position_model=1.65836	new_cov=0/4	polymorphism_quality=1.8	quality=1.8	quality_position_model=0.0100619	ref_cov=127/77	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=127/81
RA	1336	.	NC_007779	725812	0	G	C	bias_e_value=439674	bias_p_value=0.0946281	fisher_strand_p_value=0.0197057	frequency=1.883221e-02	genotype_quality=830.4	ks_quality_p_value=0.968355	log10_base_likelihood=-8.45425	log10_qual_likelihood_position_model=4.17859	log10_strand_likelihood_position_model=1.70541	new_cov=0/4	polymorphism_quality=3.0	quality=3.0	quality_position_model=0.000252322	ref_cov=131/76	reject=POLYMORPHISM_STRAND	tot_cov=131/80
RA	1337	.	NC_007779	725818	0	A	G	bias_e_value=1478390	bias_p_value=0.318185	fisher_strand_p_value=0.117281	frequency=8.048058e-02	genotype_quality=683.7	ks_quality_p_value=0.808451	log10_base_likelihood=-43.4139	log10_qual_likelihood_position_model=8.52361	log10_strand_likelihood_position_model=1.34417	new_cov=7/10	polymorphism_quality=38.3	quality=38.3	quality_position_model=7.87754e-36	ref_cov=122/72	tot_cov=129/82
RA	1338	.	NC_007779	725822	0	C	G	bias_e_value=341786	bias_p_value=0.0735604	fisher_strand_p_value=0.0141912	frequency=1.053805e-01	genotype_quality=772.5	ks_quality_p_value=0.983203	log10_base_likelihood=-64.5618	log10_qual_likelihood_position_model=14.6943	log10_strand_likelihood_position_model=2.085	new_cov=8/15	polymorphism_quality=59.5	quality=59.5	quality_position_model=3.83718e-50	ref_cov=121/74	tot_cov=129/89
RA	1339	.	NC_007779	725827	0	C	T	bias_e_value=61774.6	bias_p_value=0.0132953	fisher_strand_p_value=0.00182132	frequency=1.270971e-01	genotype_quality=691.6	ks_quality_p_value=0.998675	log10_base_likelihood=-71.8798	log10_qual_likelihood_position_model=10.0438	log10_strand_likelihood_position_model=3.02047	new_cov=8/20	polymorphism_quality=66.9	quality=66.9	quality_position_model=3.20768e-61	ref_cov=117/75	tot_cov=125/95
RA	1340	.	NC_007779	725830	0	T	C	bias_e_value=68051.5	bias_p_value=0.0146463	fisher_strand_p_value=0.00203498	frequency=1.277227e-01	genotype_quality=656.8	ks_quality_p_value=1	log10_base_likelihood=-76.0464	log10_qual_likelihood_position_model=9.76776	log10_strand_likelihood_position_model=2.91758	new_cov=8/20	polymorphism_quality=71.1	quality=71.1	quality_position_model=8.80336e-66	ref_cov=115/76	tot_cov=123/96
RA	1341	.	NC_007779	725840	0	T	G	bias_e_value=3541.21	bias_p_value=0.000762151	fisher_strand_p_value=7.27483e-05	frequency=1.372933e-01	genotype_quality=698.4	ks_quality_p_value=0.994549	log10_base_likelihood=-110.793	log10_qual_likelihood_position_model=11.366	log10_strand_likelihood_position_model=4.35851	new_cov=8/24	polymorphism_quality=105.9	quality=105.9	quality_position_model=1.41125e-97	ref_cov=127/74	reject=FISHER_STRAND_P_VALUE	tot_cov=135/98
RA	1342	.	NC_007779	725841	0	G	A	bias_e_value=3470.52	bias_p_value=0.000746938	fisher_strand_p_value=7.07579e-05	frequency=1.378155e-01	genotype_quality=706.0	ks_quality_p_value=1	log10_base_likelihood=-79.0053	log10_qual_likelihood_position_model=16.1792	log10_strand_likelihood_position_model=4.37842	new_cov=8/24	polymorphism_quality=74.0	quality=74.0	quality_position_model=7.50593e-61	ref_cov=126/73	reject=FISHER_STRAND_P_VALUE	tot_cov=134/97
RA	1343	.	NC_007779	725842	0	G	C	bias_e_value=3527.63	bias_p_value=0.00075923	fisher_strand_p_value=7.36837e-05	frequency=1.390848e-01	genotype_quality=766.7	ks_quality_p_value=0.977765	log10_base_likelihood=-101.023	log10_qual_likelihood_position_model=11.2387	log10_strand_likelihood_position_model=4.34039	new_cov=8/24	polymorphism_quality=96.1	quality=96.1	quality_position_model=6.2693e-88	ref_cov=125/73	reject=FISHER_STRAND_P_VALUE	tot_cov=133/97
RA	1344	.	NC_007779	725845	0	G	A	bias_e_value=3157.28	bias_p_value=0.000679522	fisher_strand_p_value=6.37409e-05	frequency=1.395535e-01	genotype_quality=677.9	ks_quality_p_value=1	log10_base_likelihood=-73.9201	log10_qual_likelihood_position_model=21.7806	log10_strand_likelihood_position_model=4.49698	new_cov=8/24	polymorphism_quality=68.9	quality=68.9	quality_position_model=5.30445e-50	ref_cov=126/71	reject=FISHER_STRAND_P_VALUE	tot_cov=135/95
RA	1345	.	NC_007779	725848	0	G	A	bias_e_value=1745.83	bias_p_value=0.000375744	fisher_strand_p_value=3.3806e-05	frequency=1.408787e-01	genotype_quality=709.4	ks_quality_p_value=0.982516	log10_base_likelihood=-88.6544	log10_qual_likelihood_position_model=11.0207	log10_strand_likelihood_position_model=4.81337	new_cov=8/25	polymorphism_quality=83.7	quality=83.7	quality_position_model=2.85335e-75	ref_cov=129/72	reject=FISHER_STRAND_P_VALUE	tot_cov=137/97
RA	1346	.	NC_007779	725850	0	A	T	bias_e_value=1704.21	bias_p_value=0.000366787	fisher_strand_p_value=4.27331e-05	frequency=1.403604e-01	genotype_quality=741.1	ks_quality_p_value=0.756964	log10_base_likelihood=-103.05	log10_qual_likelihood_position_model=11.1872	log10_strand_likelihood_position_model=4.5523	new_cov=8/25	polymorphism_quality=98.1	quality=98.1	quality_position_model=8.43249e-90	ref_cov=127/75	reject=FISHER_STRAND_P_VALUE	tot_cov=135/100
RA	1347	.	NC_007779	725857	0	C	T	bias_e_value=1443.98	bias_p_value=0.000310779	fisher_strand_p_value=3.78974e-05	frequency=1.396623e-01	genotype_quality=709.4	ks_quality_p_value=0.711816	log10_base_likelihood=-86.411	log10_qual_likelihood_position_model=10.3938	log10_strand_likelihood_position_model=4.65091	new_cov=8/25	polymorphism_quality=81.4	quality=81.4	quality_position_model=8.19853e-74	ref_cov=128/74	reject=FISHER_STRAND_P_VALUE	tot_cov=136/99
RA	1348	.	NC_007779	725863	0	C	G	bias_e_value=2425.78	bias_p_value=0.000522084	fisher_strand_p_value=4.76741e-05	frequency=1.430864e-01	genotype_quality=736.0	ks_quality_p_value=1	log10_base_likelihood=-100.345	log10_qual_likelihood_position_model=10.7631	log10_strand_likelihood_position_model=4.47188	new_cov=8/25	polymorphism_quality=95.4	quality=95.4	quality_position_model=1.35513e-87	ref_cov=122/73	reject=FISHER_STRAND_P_VALUE	tot_cov=130/98
RA	1349	.	NC_007779	725864	0	G	C	bias_e_value=2205.6	bias_p_value=0.000474697	fisher_strand_p_value=4.31947e-05	frequency=1.448083e-01	genotype_quality=730.5	ks_quality_p_value=0.994023	log10_base_likelihood=-106.9	log10_qual_likelihood_position_model=9.63796	log10_strand_likelihood_position_model=4.53188	new_cov=8/25	polymorphism_quality=102.0	quality=102.0	quality_position_model=3.11405e-95	ref_cov=122/72	reject=FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=130/98
RA	1350	.	NC_007779	725866	0	G	C	bias_e_value=2421.89	bias_p_value=0.000521247	fisher_strand_p_value=4.76741e-05	frequency=1.446199e-01	genotype_quality=741.1	ks_quality_p_value=0.998235	log10_base_likelihood=-103.172	log10_qual_likelihood_position_model=12.7026	log10_strand_likelihood_position_model=4.47188	new_cov=8/25	polymorphism_quality=98.2	quality=98.2	quality_position_model=1.74676e-88	ref_cov=122/73	reject=FISHER_STRAND_P_VALUE	tot_cov=130/98
RA	1351	.	NC_007779	725883	0	G	A	bias_e_value=84.9157	bias_p_value=1.82759e-05	fisher_strand_p_value=0.0238465	frequency=1.645641e-01	genotype_quality=669.0	ks_quality_p_value=5.25279e-05	log10_base_likelihood=-112.228	log10_qual_likelihood_position_model=13.583	log10_strand_likelihood_position_model=2.03168	new_cov=15/25	polymorphism_quality=107.3	quality=107.3	quality_position_model=3.99331e-99	ref_cov=117/86	reject=KS_QUALITY_P_VALUE	tot_cov=132/111
RA	1352	.	NC_007779	725884	0	C	T	bias_e_value=137.439	bias_p_value=2.95801e-05	fisher_strand_p_value=0.0238465	frequency=1.644969e-01	genotype_quality=667.1	ks_quality_p_value=8.81456e-05	log10_base_likelihood=-109.553	log10_qual_likelihood_position_model=17.6369	log10_strand_likelihood_position_model=2.03168	new_cov=15/25	polymorphism_quality=104.6	quality=104.6	quality_position_model=2.21734e-92	ref_cov=117/86	reject=KS_QUALITY_P_VALUE	tot_cov=132/111
RA	1353	.	NC_007779	725890	0	A	T	bias_e_value=3222.31	bias_p_value=0.000693517	fisher_strand_p_value=0.0391883	frequency=1.634350e-01	genotype_quality=752.5	ks_quality_p_value=0.00166354	log10_base_likelihood=-128.146	log10_qual_likelihood_position_model=19.5098	log10_strand_likelihood_position_model=1.86834	new_cov=16/25	polymorphism_quality=123.3	quality=123.3	quality_position_model=2.6613e-109	ref_cov=120/89	tot_cov=136/114
RA	1354	.	NC_007779	725908	0	G	A	bias_e_value=254977	bias_p_value=0.0548771	fisher_strand_p_value=0.0189283	frequency=1.538882e-01	genotype_quality=694.4	ks_quality_p_value=0.514873	log10_base_likelihood=-91.6193	log10_qual_likelihood_position_model=17.7738	log10_strand_likelihood_position_model=2.10683	new_cov=14/23	polymorphism_quality=86.7	quality=86.7	quality_position_model=3.46911e-74	ref_cov=120/82	tot_cov=134/105
RA	1355	.	NC_007779	725917	0	C	G	bias_e_value=588348	bias_p_value=0.126626	fisher_strand_p_value=0.063137	frequency=1.210384e-01	genotype_quality=777.6	ks_quality_p_value=0.436898	log10_base_likelihood=-84.2474	log10_qual_likelihood_position_model=12.5846	log10_strand_likelihood_position_model=1.61267	new_cov=10/17	polymorphism_quality=79.3	quality=79.3	quality_position_model=1.71356e-72	ref_cov=112/84	tot_cov=122/101
RA	1356	.	NC_007779	725920	0	T	G	bias_e_value=1038010	bias_p_value=0.223405	fisher_strand_p_value=0.260119	frequency=9.691048e-02	genotype_quality=759.3	ks_quality_p_value=0.223327	log10_base_likelihood=-74.9739	log10_qual_likelihood_position_model=13.2233	log10_strand_likelihood_position_model=1.11842	new_cov=9/13	polymorphism_quality=70.0	quality=70.0	quality_position_model=4.81984e-63	ref_cov=114/91	tot_cov=123/104
RA	1357	.	NC_007779	725925	0	A	G	bias_e_value=3478880	bias_p_value=0.748737	fisher_strand_p_value=0.405075	frequency=6.094456e-02	genotype_quality=739.1	ks_quality_p_value=0.940792	log10_base_likelihood=-31.5095	log10_qual_likelihood_position_model=6.68246	log10_strand_likelihood_position_model=0.799227	new_cov=9/4	polymorphism_quality=26.3	quality=26.3	quality_position_model=3.06261e-26	ref_cov=113/87	tot_cov=122/91
RA	1358	.	NC_007779	725926	0	A	G	bias_e_value=3316210	bias_p_value=0.713726	fisher_strand_p_value=0.405075	frequency=6.090403e-02	genotype_quality=730.5	ks_quality_p_value=0.85535	log10_base_likelihood=-30.3364	log10_qual_likelihood_position_model=6.84179	log10_strand_likelihood_position_model=0.799227	new_cov=9/4	polymorphism_quality=25.1	quality=25.1	quality_position_model=6.77164e-25	ref_cov=113/87	tot_cov=122/91
RA	1359	.	NC_007779	725929	0	A	T	bias_e_value=3483080	bias_p_value=0.749642	fisher_strand_p_value=0.399941	frequency=5.868244e-02	genotype_quality=789.6	ks_quality_p_value=0.955219	log10_base_likelihood=-31.7592	log10_qual_likelihood_position_model=8.71	log10_strand_likelihood_position_model=0.820755	new_cov=9/4	polymorphism_quality=26.6	quality=26.6	quality_position_model=2.00473e-24	ref_cov=116/92	tot_cov=125/96
RA	1360	.	NC_007779	725932	0	T	C	bias_e_value=2380930	bias_p_value=0.512433	fisher_strand_p_value=0.401424	frequency=5.848789e-02	genotype_quality=767.8	ks_quality_p_value=0.483725	log10_base_likelihood=-31.7677	log10_qual_likelihood_position_model=7.638	log10_strand_likelihood_position_model=0.814777	new_cov=9/4	polymorphism_quality=26.6	quality=26.6	quality_position_model=1.60473e-25	ref_cov=117/92	tot_cov=126/96
RA	1361	.	NC_007779	725934	0	C	T	bias_e_value=3533970	bias_p_value=0.760594	fisher_strand_p_value=0.397239	frequency=5.919075e-02	genotype_quality=804.5	ks_quality_p_value=0.990821	log10_base_likelihood=-29.8663	log10_qual_likelihood_position_model=7.23402	log10_strand_likelihood_position_model=0.83315	new_cov=9/4	polymorphism_quality=24.7	quality=24.7	quality_position_model=5.43906e-24	ref_cov=114/92	tot_cov=123/96
RA	1362	.	NC_007779	725937	0	C	A	bias_e_value=3511040	bias_p_value=0.755658	fisher_strand_p_value=0.390415	frequency=5.989170e-02	genotype_quality=847.5	ks_quality_p_value=0.994678	log10_base_likelihood=-29.5447	log10_qual_likelihood_position_model=7.68232	log10_strand_likelihood_position_model=0.901059	new_cov=9/4	polymorphism_quality=24.3	quality=24.3	quality_position_model=3.81662e-23	ref_cov=108/95	tot_cov=117/100
RA	1363	.	NC_007779	725941	0	A	C	bias_e_value=3406020	bias_p_value=0.733055	fisher_strand_p_value=0.39156	frequency=5.936146e-02	genotype_quality=777.6	ks_quality_p_value=0.932641	log10_base_likelihood=-41.7966	log10_qual_likelihood_position_model=6.23615	log10_strand_likelihood_position_model=0.8787	new_cov=9/4	polymorphism_quality=36.7	quality=36.7	quality_position_model=5.67059e-37	ref_cov=111/95	tot_cov=120/99
RA	1364	.	NC_007779	725943	0	A	C	bias_e_value=2150320	bias_p_value=0.462798	fisher_strand_p_value=0.390692	frequency=5.881929e-02	genotype_quality=776.5	ks_quality_p_value=0.423038	log10_base_likelihood=-42.3024	log10_qual_likelihood_position_model=6.35335	log10_strand_likelihood_position_model=0.912687	new_cov=9/4	polymorphism_quality=37.2	quality=37.2	quality_position_model=2.49361e-37	ref_cov=110/98	tot_cov=119/102
RA	1365	.	NC_007779	725946	0	G	T	bias_e_value=3191660	bias_p_value=0.68692	fisher_strand_p_value=0.391353	frequency=5.744648e-02	genotype_quality=877.9	ks_quality_p_value=0.82285	log10_base_likelihood=-34.728	log10_qual_likelihood_position_model=6.56072	log10_strand_likelihood_position_model=0.891611	new_cov=9/4	polymorphism_quality=29.6	quality=29.6	quality_position_model=1.62611e-29	ref_cov=114/99	tot_cov=123/103
RA	1366	.	NC_007779	725947	0	A	G	bias_e_value=3253320	bias_p_value=0.700191	fisher_strand_p_value=0.582372	frequency=6.121302e-02	genotype_quality=750.6	ks_quality_p_value=0.573394	log10_base_likelihood=-32.3079	log10_qual_likelihood_position_model=6.84525	log10_strand_likelihood_position_model=0.775059	new_cov=9/5	polymorphism_quality=27.1	quality=27.1	quality_position_model=6.61504e-27	ref_cov=112/96	tot_cov=121/101
RA	1367	.	NC_007779	725956	0	T	C	bias_e_value=2686140	bias_p_value=0.578121	fisher_strand_p_value=0.268242	frequency=6.151724e-02	genotype_quality=775.5	ks_quality_p_value=0.883305	log10_base_likelihood=-32.7052	log10_qual_likelihood_position_model=6.98737	log10_strand_likelihood_position_model=1.03675	new_cov=10/4	polymorphism_quality=27.5	quality=27.5	quality_position_model=6.71586e-27	ref_cov=112/100	tot_cov=122/104
RA	1368	.	NC_007779	725957	0	G	T	bias_e_value=2484660	bias_p_value=0.534757	fisher_strand_p_value=0.26523	frequency=5.800104e-02	genotype_quality=865.5	ks_quality_p_value=0.784589	log10_base_likelihood=-34.8821	log10_qual_likelihood_position_model=7.24508	log10_strand_likelihood_position_model=0.939842	new_cov=9/4	polymorphism_quality=29.7	quality=29.7	quality_position_model=6.22622e-29	ref_cov=110/101	tot_cov=119/105
RA	1369	.	NC_007779	725959	0	C	T	bias_e_value=2823930	bias_p_value=0.607776	fisher_strand_p_value=0.26523	frequency=5.789042e-02	genotype_quality=829.8	ks_quality_p_value=0.973405	log10_base_likelihood=-29.3504	log10_qual_likelihood_position_model=5.75985	log10_strand_likelihood_position_model=0.939842	new_cov=9/4	polymorphism_quality=24.1	quality=24.1	quality_position_model=7.51257e-25	ref_cov=110/101	tot_cov=119/105
RA	1370	.	NC_007779	725965	0	G	C	bias_e_value=3297220	bias_p_value=0.709639	fisher_strand_p_value=0.518655	frequency=4.050732e-02	genotype_quality=878.0	ks_quality_p_value=0.660643	log10_base_likelihood=-24.4938	log10_qual_likelihood_position_model=4.67857	log10_strand_likelihood_position_model=0.670752	new_cov=6/3	polymorphism_quality=19.3	quality=19.3	quality_position_model=2.61705e-21	ref_cov=116/97	tot_cov=122/100
RA	1371	.	NC_007779	725966	0	G	T	bias_e_value=3898150	bias_p_value=0.838974	fisher_strand_p_value=0.517033	frequency=4.063034e-02	genotype_quality=859.4	ks_quality_p_value=0.946179	log10_base_likelihood=-21.7751	log10_qual_likelihood_position_model=6.04549	log10_strand_likelihood_position_model=0.674681	new_cov=6/3	polymorphism_quality=16.5	quality=16.5	quality_position_model=3.61641e-17	ref_cov=115/97	tot_cov=122/100
RA	1372	.	NC_007779	725967	0	C	G	bias_e_value=3388080	bias_p_value=0.729195	fisher_strand_p_value=0.512295	frequency=4.077721e-02	genotype_quality=854.1	ks_quality_p_value=0.705402	log10_base_likelihood=-24.4346	log10_qual_likelihood_position_model=5.68702	log10_strand_likelihood_position_model=0.687893	new_cov=6/3	polymorphism_quality=19.2	quality=19.2	quality_position_model=3.27329e-20	ref_cov=113/98	tot_cov=120/101
RA	1373	.	NC_007779	725974	0	T	G	bias_e_value=2880440	bias_p_value=0.619939	fisher_strand_p_value=1	frequency=1.852608e-02	genotype_quality=779.6	ks_quality_p_value=0.267275	log10_base_likelihood=-10.5301	log10_qual_likelihood_position_model=3.68208	log10_strand_likelihood_position_model=0.431993	new_cov=2/2	polymorphism_quality=5.1	quality=5.1	quality_position_model=2.3704e-08	ref_cov=117/94	reject=SURROUNDING_HOMOPOLYMER	tot_cov=120/96
RA	1374	.	NC_007779	725977	0	C	G	bias_e_value=4630150	bias_p_value=0.996517	fisher_strand_p_value=1	frequency=1.774693e-02	genotype_quality=889.2	ks_quality_p_value=0.917707	log10_base_likelihood=-7.91924	log10_qual_likelihood_position_model=3.95863	log10_strand_likelihood_position_model=0.435869	new_cov=2/2	polymorphism_quality=2.4	quality=2.4	quality_position_model=2.43379e-05	ref_cov=124/96	tot_cov=126/98
RA	1375	.	NC_007779	725980	0	T	C	bias_e_value=4631460	bias_p_value=0.996799	fisher_strand_p_value=1	frequency=1.808643e-02	genotype_quality=834.0	ks_quality_p_value=0.921056	log10_base_likelihood=-6.90013	log10_qual_likelihood_position_model=3.26033	log10_strand_likelihood_position_model=0.433475	new_cov=2/2	polymorphism_quality=1.4	quality=1.4	quality_position_model=5.28709e-05	ref_cov=120/95	reject=EVALUE	tot_cov=122/97
RA	1376	.	NC_007779	726501	0	A	C	bias_e_value=6994.67	bias_p_value=0.00150542	fisher_strand_p_value=0.0406541	frequency=4.898071e-02	genotype_quality=881.1	ks_quality_p_value=0.00378671	log10_base_likelihood=-39.286	log10_qual_likelihood_position_model=6.43177	log10_strand_likelihood_position_model=1.57529	new_cov=10/2	polymorphism_quality=34.1	quality=34.1	quality_position_model=1.50858e-33	ref_cov=122/111	tot_cov=132/113
RA	1377	.	NC_007779	726502	0	C	A	bias_e_value=19276.1	bias_p_value=0.00414867	fisher_strand_p_value=0.0421379	frequency=4.882383e-02	genotype_quality=966.2	ks_quality_p_value=0.0113932	log10_base_likelihood=-25.4395	log10_qual_likelihood_position_model=6.13419	log10_strand_likelihood_position_model=1.54909	new_cov=10/2	polymorphism_quality=20.2	quality=20.2	quality_position_model=6.63827e-20	ref_cov=123/110	tot_cov=133/112
RA	1378	.	NC_007779	726519	0	G	A	bias_e_value=11212.7	bias_p_value=0.00241324	fisher_strand_p_value=0.070215	frequency=5.056477e-02	genotype_quality=882.8	ks_quality_p_value=0.00371496	log10_base_likelihood=-28.7883	log10_qual_likelihood_position_model=5.27381	log10_strand_likelihood_position_model=1.54114	new_cov=10/2	polymorphism_quality=23.6	quality=23.6	quality_position_model=3.62756e-24	ref_cov=119/106	tot_cov=129/108
RA	1379	.	NC_007779	726520	0	T	G	bias_e_value=867.355	bias_p_value=0.000186675	fisher_strand_p_value=0.0701216	frequency=5.128908e-02	genotype_quality=815.6	ks_quality_p_value=0.000220424	log10_base_likelihood=-41.2317	log10_qual_likelihood_position_model=7.35059	log10_strand_likelihood_position_model=1.52451	new_cov=10/2	polymorphism_quality=36.1	quality=36.1	quality_position_model=1.24066e-34	ref_cov=118/104	reject=KS_QUALITY_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=128/106
RA	1380	.	NC_007779	726535	0	T	C	bias_e_value=689809	bias_p_value=0.148463	fisher_strand_p_value=0.0416711	frequency=5.418110e-02	genotype_quality=773.5	ks_quality_p_value=0.812336	log10_base_likelihood=-27.0551	log10_qual_likelihood_position_model=7.56512	log10_strand_likelihood_position_model=1.55236	new_cov=10/2	polymorphism_quality=21.8	quality=21.8	quality_position_model=4.34996e-20	ref_cov=110/99	tot_cov=120/101
RA	1381	.	NC_007779	726538	0	A	G	bias_e_value=148515	bias_p_value=0.031964	fisher_strand_p_value=0.0372105	frequency=5.145025e-02	genotype_quality=807.8	ks_quality_p_value=0.136771	log10_base_likelihood=-30.3785	log10_qual_likelihood_position_model=6.73409	log10_strand_likelihood_position_model=1.64891	new_cov=10/2	polymorphism_quality=25.2	quality=25.2	quality_position_model=3.44544e-24	ref_cov=113/108	tot_cov=123/110
RA	1382	.	NC_007779	726541	0	C	T	bias_e_value=448784	bias_p_value=0.096589	fisher_strand_p_value=0.0362404	frequency=5.095291e-02	genotype_quality=878.4	ks_quality_p_value=0.540253	log10_base_likelihood=-26.5609	log10_qual_likelihood_position_model=6.45945	log10_strand_likelihood_position_model=1.67881	new_cov=10/2	polymorphism_quality=21.3	quality=21.3	quality_position_model=1.40542e-20	ref_cov=113/110	tot_cov=123/112
RA	1383	.	NC_007779	726544	0	T	C	bias_e_value=4801.3	bias_p_value=0.00103335	fisher_strand_p_value=0.0389514	frequency=5.125952e-02	genotype_quality=802.5	ks_quality_p_value=0.00260166	log10_base_likelihood=-31.0669	log10_qual_likelihood_position_model=8.90602	log10_strand_likelihood_position_model=1.60701	new_cov=10/2	polymorphism_quality=25.9	quality=25.9	quality_position_model=9.8472e-23	ref_cov=115/107	tot_cov=125/109
RA	1384	.	NC_007779	726550	0	A	C	bias_e_value=104836	bias_p_value=0.0225632	fisher_strand_p_value=0.0694319	frequency=6.249905e-02	genotype_quality=672.1	ks_quality_p_value=0.0485578	log10_base_likelihood=-40.8446	log10_qual_likelihood_position_model=8.88977	log10_strand_likelihood_position_model=1.46848	new_cov=10/2	polymorphism_quality=35.7	quality=35.7	quality_position_model=9.4767e-33	ref_cov=97/83	tot_cov=107/85
RA	1385	.	NC_007779	726551	0	A	G	bias_e_value=147078	bias_p_value=0.0316547	fisher_strand_p_value=0.0705376	frequency=6.314611e-02	genotype_quality=622.5	ks_quality_p_value=0.0713208	log10_base_likelihood=-31.7068	log10_qual_likelihood_position_model=7.98798	log10_strand_likelihood_position_model=1.43308	new_cov=10/2	polymorphism_quality=26.5	quality=26.5	quality_position_model=1.75472e-24	ref_cov=97/81	tot_cov=107/83
RA	1386	.	NC_007779	726552	0	C	T	bias_e_value=1081050	bias_p_value=0.232667	fisher_strand_p_value=0.0705376	frequency=6.300735e-02	genotype_quality=676.4	ks_quality_p_value=0.87015	log10_base_likelihood=-27.0937	log10_qual_likelihood_position_model=7.68006	log10_strand_likelihood_position_model=1.43308	new_cov=10/2	polymorphism_quality=21.9	quality=21.9	quality_position_model=3.93587e-20	ref_cov=97/81	tot_cov=107/83
RA	1387	.	NC_007779	726554	0	T	G	bias_e_value=546172	bias_p_value=0.117549	fisher_strand_p_value=0.0705376	frequency=6.316948e-02	genotype_quality=673.1	ks_quality_p_value=0.355679	log10_base_likelihood=-37.7225	log10_qual_likelihood_position_model=7.12737	log10_strand_likelihood_position_model=1.43308	new_cov=10/2	polymorphism_quality=32.6	quality=32.6	quality_position_model=2.04389e-31	ref_cov=97/81	tot_cov=107/83
RA	1388	.	NC_007779	726556	0	A	G	bias_e_value=392934	bias_p_value=0.0845687	fisher_strand_p_value=0.0705376	frequency=6.311607e-02	genotype_quality=639.2	ks_quality_p_value=0.235114	log10_base_likelihood=-31.5801	log10_qual_likelihood_position_model=5.65364	log10_strand_likelihood_position_model=1.43308	new_cov=10/2	polymorphism_quality=26.4	quality=26.4	quality_position_model=1.03854e-26	ref_cov=97/81	tot_cov=107/83
RA	1389	.	NC_007779	726565	0	T	A	bias_e_value=851009	bias_p_value=0.183157	fisher_strand_p_value=0.0701795	frequency=5.658865e-02	genotype_quality=793.0	ks_quality_p_value=0.634827	log10_base_likelihood=-35.5879	log10_qual_likelihood_position_model=4.12317	log10_strand_likelihood_position_model=1.46859	new_cov=10/2	polymorphism_quality=30.4	quality=30.4	quality_position_model=2.95352e-32	ref_cov=108/92	tot_cov=118/94
RA	1390	.	NC_007779	726568	0	C	G	bias_e_value=1056450	bias_p_value=0.227373	fisher_strand_p_value=0.0709739	frequency=5.553293e-02	genotype_quality=852.4	ks_quality_p_value=0.838223	log10_base_likelihood=-35.4793	log10_qual_likelihood_position_model=5.20541	log10_strand_likelihood_position_model=1.44599	new_cov=10/2	polymorphism_quality=30.3	quality=30.3	quality_position_model=4.43693e-31	ref_cov=111/93	tot_cov=121/95
RA	1391	.	NC_007779	726571	0	T	C	bias_e_value=1093980	bias_p_value=0.23545	fisher_strand_p_value=0.0701915	frequency=5.448914e-02	genotype_quality=784.7	ks_quality_p_value=0.88869	log10_base_likelihood=-29.2396	log10_qual_likelihood_position_model=4.53413	log10_strand_likelihood_position_model=1.47983	new_cov=10/2	polymorphism_quality=24.0	quality=24.0	quality_position_model=1.97475e-25	ref_cov=112/96	tot_cov=122/98
RA	1392	.	NC_007779	726577	0	T	C	bias_e_value=1156040	bias_p_value=0.248808	fisher_strand_p_value=0.0756016	frequency=5.418396e-02	genotype_quality=789.0	ks_quality_p_value=0.889664	log10_base_likelihood=-27.2436	log10_qual_likelihood_position_model=6.43846	log10_strand_likelihood_position_model=1.35938	new_cov=10/2	polymorphism_quality=22.0	quality=22.0	quality_position_model=1.2978e-21	ref_cov=117/92	tot_cov=127/94
RA	1393	.	NC_007779	726583	0	T	G	bias_e_value=949914	bias_p_value=0.204444	fisher_strand_p_value=0.0713467	frequency=5.429506e-02	genotype_quality=808.5	ks_quality_p_value=0.722706	log10_base_likelihood=-35.8854	log10_qual_likelihood_position_model=5.87917	log10_strand_likelihood_position_model=1.43969	new_cov=10/2	polymorphism_quality=30.7	quality=30.7	quality_position_model=8.13553e-31	ref_cov=114/95	tot_cov=124/97
RA	1394	.	NC_007779	732597	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1395	.	NC_007779	732598	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1396	.	NC_007779	732599	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1397	.	NC_007779	732601	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1398	.	NC_007779	732602	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1399	.	NC_007779	732603	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1400	.	NC_007779	732604	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1401	.	NC_007779	732605	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1402	.	NC_007779	732607	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1403	.	NC_007779	732608	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1404	.	NC_007779	732610	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1405	.	NC_007779	732611	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1406	.	NC_007779	732613	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1407	.	NC_007779	732614	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1408	.	NC_007779	749354	0	C	A	frequency=1	genotype_quality=850.8	new_cov=111/101	quality=850.8	ref_cov=0/0	tot_cov=111/101
RA	1409	.	NC_007779	752693	0	A	C	bias_e_value=3.35082e-21	bias_p_value=7.21176e-28	fisher_strand_p_value=1.06506e-29	frequency=2.005181e-01	genotype_quality=532.6	ks_quality_p_value=1	log10_base_likelihood=-42.7386	log10_qual_likelihood_position_model=46.3936	log10_strand_likelihood_position_model=28.9726	new_cov=0/55	polymorphism_quality=37.6	quality=37.6	quality_position_model=Inf	ref_cov=140/34	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=140/89
RA	1410	.	NC_007779	753547	0	T	A	bias_e_value=0.000684231	bias_p_value=1.47263e-10	fisher_strand_p_value=5.46792e-12	frequency=1.415930e-01	genotype_quality=516.5	ks_quality_p_value=1	log10_base_likelihood=-23.853	log10_qual_likelihood_position_model=28.4571	log10_strand_likelihood_position_model=11.2622	new_cov=0/24	polymorphism_quality=18.6	quality=18.6	quality_position_model=Inf	ref_cov=99/39	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=99/63
RA	1411	.	NC_007779	758440	0	C	A	frequency=1	genotype_quality=937.4	new_cov=120/113	quality=937.4	ref_cov=0/0	tot_cov=120/113
RA	1412	.	NC_007779	759019	0	C	G	bias_e_value=0.000147519	bias_p_value=3.17495e-11	fisher_strand_p_value=1.13117e-12	frequency=6.830740e-02	genotype_quality=571.0	ks_quality_p_value=0.984013	log10_base_likelihood=-21.9467	log10_qual_likelihood_position_model=13.8677	log10_strand_likelihood_position_model=11.9465	new_cov=0/10	polymorphism_quality=16.7	quality=16.7	quality_position_model=Inf	ref_cov=132/4	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=132/14
RA	1413	.	NC_007779	771319	0	T	G	bias_e_value=0.0824909	bias_p_value=1.7754e-08	fisher_strand_p_value=8.09401e-10	frequency=8.450842e-02	genotype_quality=474.3	ks_quality_p_value=1	log10_base_likelihood=-7.28867	log10_qual_likelihood_position_model=22.9398	log10_strand_likelihood_position_model=9.20359	new_cov=30/0	polymorphism_quality=1.8	quality=1.8	quality_position_model=Inf	ref_cov=67/84	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=97/84
RA	1414	.	NC_007779	815429	0	G	C	bias_e_value=4645340	bias_p_value=0.999786	fisher_strand_p_value=1	frequency=2.735519e-02	genotype_quality=888.0	ks_quality_p_value=0.979378	log10_base_likelihood=-14.8925	log10_qual_likelihood_position_model=3.22064	log10_strand_likelihood_position_model=0.500488	new_cov=3/3	polymorphism_quality=9.5	quality=9.5	quality_position_model=3.19606e-13	ref_cov=110/103	tot_cov=114/106
RA	1415	.	NC_007779	815437	0	T	A	bias_e_value=4048930	bias_p_value=0.871425	fisher_strand_p_value=0.566697	frequency=5.145931e-02	genotype_quality=866.1	ks_quality_p_value=0.949135	log10_base_likelihood=-32.4694	log10_qual_likelihood_position_model=7.06485	log10_strand_likelihood_position_model=0.718282	new_cov=7/5	polymorphism_quality=27.3	quality=27.3	quality_position_model=6.63535e-27	ref_cov=108/113	tot_cov=115/118
RA	1416	.	NC_007779	815450	0	A	C	bias_e_value=2260040	bias_p_value=0.486413	fisher_strand_p_value=0.5134	frequency=9.428167e-02	genotype_quality=802.1	ks_quality_p_value=0.348053	log10_base_likelihood=-79.2295	log10_qual_likelihood_position_model=8.59214	log10_strand_likelihood_position_model=0.891127	new_cov=13/10	polymorphism_quality=74.2	quality=74.2	quality_position_model=3.45755e-72	ref_cov=106/115	tot_cov=119/125
RA	1417	.	NC_007779	815453	0	G	T	bias_e_value=3087490	bias_p_value=0.664501	fisher_strand_p_value=0.526232	frequency=9.774637e-02	genotype_quality=909.0	ks_quality_p_value=0.575333	log10_base_likelihood=-58.8169	log10_qual_likelihood_position_model=15.2632	log10_strand_likelihood_position_model=0.864549	new_cov=13/11	polymorphism_quality=53.8	quality=53.8	quality_position_model=5.03028e-45	ref_cov=102/115	tot_cov=115/126
RA	1418	.	NC_007779	815456	0	C	T	bias_e_value=719150	bias_p_value=0.154778	fisher_strand_p_value=0.389334	frequency=9.269905e-02	genotype_quality=822.4	ks_quality_p_value=0.0917753	log10_base_likelihood=-60.2522	log10_qual_likelihood_position_model=6.56406	log10_strand_likelihood_position_model=0.934866	new_cov=13/10	polymorphism_quality=55.2	quality=55.2	quality_position_model=3.9078e-55	ref_cov=105/120	tot_cov=118/130
RA	1419	.	NC_007779	815460	0	T	C	bias_e_value=415523	bias_p_value=0.0894303	fisher_strand_p_value=0.379913	frequency=9.462833e-02	genotype_quality=774.8	ks_quality_p_value=0.0468019	log10_base_likelihood=-65.2269	log10_qual_likelihood_position_model=7.45379	log10_strand_likelihood_position_model=0.998447	new_cov=13/10	polymorphism_quality=60.2	quality=60.2	quality_position_model=3.58684e-59	ref_cov=99/121	tot_cov=112/131
RA	1420	.	NC_007779	815462	0	A	G	bias_e_value=811088	bias_p_value=0.174565	fisher_strand_p_value=0.380358	frequency=9.483480e-02	genotype_quality=756.2	ks_quality_p_value=0.109943	log10_base_likelihood=-62.381	log10_qual_likelihood_position_model=8.46011	log10_strand_likelihood_position_model=0.989749	new_cov=13/10	polymorphism_quality=57.3	quality=57.3	quality_position_model=2.59022e-55	ref_cov=99/120	tot_cov=112/130
RA	1421	.	NC_007779	815471	0	A	G	bias_e_value=4303780	bias_p_value=0.926276	fisher_strand_p_value=0.852748	frequency=1.313925e-01	genotype_quality=731.3	ks_quality_p_value=0.752233	log10_base_likelihood=-92.6415	log10_qual_likelihood_position_model=10.3233	log10_strand_likelihood_position_model=0.836909	new_cov=15/18	polymorphism_quality=87.7	quality=87.7	quality_position_model=5.88961e-84	ref_cov=95/123	tot_cov=110/141
RA	1422	.	NC_007779	815474	0	T	C	bias_e_value=1851030	bias_p_value=0.398385	fisher_strand_p_value=1	frequency=1.336980e-01	genotype_quality=694.8	ks_quality_p_value=0.131552	log10_base_likelihood=-96.5701	log10_qual_likelihood_position_model=12.1991	log10_strand_likelihood_position_model=0.833181	new_cov=15/19	polymorphism_quality=91.6	quality=91.6	quality_position_model=5.10798e-86	ref_cov=98/123	tot_cov=114/142
RA	1423	.	NC_007779	815477	0	G	C	bias_e_value=4215580	bias_p_value=0.907292	fisher_strand_p_value=0.851812	frequency=1.293435e-01	genotype_quality=839.4	ks_quality_p_value=0.706216	log10_base_likelihood=-105.243	log10_qual_likelihood_position_model=13.6087	log10_strand_likelihood_position_model=0.849812	new_cov=14/19	polymorphism_quality=100.3	quality=100.3	quality_position_model=2.77696e-93	ref_cov=101/121	tot_cov=115/140
RA	1424	.	NC_007779	815480	0	T	C	bias_e_value=4357280	bias_p_value=0.937789	fisher_strand_p_value=0.853129	frequency=1.303940e-01	genotype_quality=732.8	ks_quality_p_value=0.783793	log10_base_likelihood=-92.3974	log10_qual_likelihood_position_model=10.4981	log10_strand_likelihood_position_model=0.837049	new_cov=14/19	polymorphism_quality=87.4	quality=87.4	quality_position_model=1.5499e-83	ref_cov=98/122	tot_cov=112/141
RA	1425	.	NC_007779	815481	0	A	T	bias_e_value=4076790	bias_p_value=0.87742	fisher_strand_p_value=0.853129	frequency=1.303992e-01	genotype_quality=835.2	ks_quality_p_value=0.641969	log10_base_likelihood=-104.895	log10_qual_likelihood_position_model=11.0235	log10_strand_likelihood_position_model=0.837049	new_cov=14/19	polymorphism_quality=100.0	quality=100.0	quality_position_model=1.54285e-95	ref_cov=98/122	reject=SURROUNDING_HOMOPOLYMER	tot_cov=112/141
RA	1426	.	NC_007779	815486	0	G	C	bias_e_value=4589240	bias_p_value=0.987713	fisher_strand_p_value=1	frequency=1.819835e-01	genotype_quality=784.6	ks_quality_p_value=0.847388	log10_base_likelihood=-164.634	log10_qual_likelihood_position_model=11.549	log10_strand_likelihood_position_model=0.901413	new_cov=23/26	polymorphism_quality=159.8	quality=159.8	quality_position_model=8.56422e-155	ref_cov=104/116	tot_cov=127/143
RA	1427	.	NC_007779	815489	0	A	G	bias_e_value=4646290	bias_p_value=0.999991	fisher_strand_p_value=1	frequency=1.851125e-01	genotype_quality=675.2	ks_quality_p_value=0.9957	log10_base_likelihood=-148.623	log10_qual_likelihood_position_model=10.4366	log10_strand_likelihood_position_model=0.906429	new_cov=23/27	polymorphism_quality=143.8	quality=143.8	quality_position_model=7.22126e-140	ref_cov=103/117	tot_cov=126/144
RA	1428	.	NC_007779	815492	0	G	T	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=1.901002e-01	genotype_quality=857.8	ks_quality_p_value=1	log10_base_likelihood=-134.22	log10_qual_likelihood_position_model=17.8848	log10_strand_likelihood_position_model=0.908029	new_cov=23/28	polymorphism_quality=129.3	quality=129.3	quality_position_model=5.61054e-118	ref_cov=99/117	reject=SURROUNDING_HOMOPOLYMER	tot_cov=122/145
RA	1429	.	NC_007779	815504	0	G	A	bias_e_value=4280170	bias_p_value=0.921192	fisher_strand_p_value=0.887361	frequency=2.277808e-01	genotype_quality=648.1	ks_quality_p_value=0.710239	log10_base_likelihood=-194.402	log10_qual_likelihood_position_model=10.9017	log10_strand_likelihood_position_model=0.959855	new_cov=30/35	polymorphism_quality=189.6	quality=189.6	quality_position_model=3.43906e-185	ref_cov=98/122	tot_cov=128/157
RA	1430	.	NC_007779	815522	0	A	G	bias_e_value=3127680	bias_p_value=0.67315	fisher_strand_p_value=0.770929	frequency=2.068682e-01	genotype_quality=670.0	ks_quality_p_value=0.402205	log10_base_likelihood=-186.461	log10_qual_likelihood_position_model=12.2726	log10_strand_likelihood_position_model=0.968831	new_cov=28/32	polymorphism_quality=181.7	quality=181.7	quality_position_model=7.39062e-176	ref_cov=101/129	tot_cov=129/161
RA	1431	.	NC_007779	815525	0	A	G	bias_e_value=4330950	bias_p_value=0.932123	fisher_strand_p_value=0.770757	frequency=2.061071e-01	genotype_quality=684.2	ks_quality_p_value=0.849752	log10_base_likelihood=-180.67	log10_qual_likelihood_position_model=11.5574	log10_strand_likelihood_position_model=0.973541	new_cov=28/32	polymorphism_quality=175.9	quality=175.9	quality_position_model=9.02844e-171	ref_cov=101/130	tot_cov=129/162
RA	1432	.	NC_007779	815528	0	C	G	bias_e_value=3886770	bias_p_value=0.836525	fisher_strand_p_value=0.884928	frequency=2.055683e-01	genotype_quality=758.4	ks_quality_p_value=0.548967	log10_base_likelihood=-207.05	log10_qual_likelihood_position_model=13.0033	log10_strand_likelihood_position_model=0.946173	new_cov=28/32	polymorphism_quality=202.3	quality=202.3	quality_position_model=9.20767e-196	ref_cov=105/127	tot_cov=133/159
RA	1433	.	NC_007779	815532	0	C	T	bias_e_value=4646330	bias_p_value=0.999999	fisher_strand_p_value=1	frequency=1.935482e-01	genotype_quality=736.1	ks_quality_p_value=0.998713	log10_base_likelihood=-157.76	log10_qual_likelihood_position_model=10.6855	log10_strand_likelihood_position_model=0.922454	new_cov=25/30	polymorphism_quality=152.9	quality=152.9	quality_position_model=9.39795e-149	ref_cov=105/124	tot_cov=130/154
RA	1434	.	NC_007779	815540	0	C	G	bias_e_value=4573430	bias_p_value=0.98431	fisher_strand_p_value=1	frequency=1.861048e-01	genotype_quality=778.6	ks_quality_p_value=0.828168	log10_base_likelihood=-174.085	log10_qual_likelihood_position_model=11.1164	log10_strand_likelihood_position_model=0.90886	new_cov=23/28	polymorphism_quality=169.3	quality=169.3	quality_position_model=1.10397e-164	ref_cov=102/121	tot_cov=125/149
RA	1435	.	NC_007779	815543	0	A	G	bias_e_value=1163210	bias_p_value=0.250349	fisher_strand_p_value=0.510032	frequency=1.632662e-01	genotype_quality=691.0	ks_quality_p_value=0.132996	log10_base_likelihood=-128.779	log10_qual_likelihood_position_model=12.4003	log10_strand_likelihood_position_model=1.00141	new_cov=18/26	polymorphism_quality=123.9	quality=123.9	quality_position_model=6.29488e-118	ref_cov=106/119	tot_cov=125/145
RA	1436	.	NC_007779	815555	0	C	T	bias_e_value=4174650	bias_p_value=0.898483	fisher_strand_p_value=0.60421	frequency=1.448941e-01	genotype_quality=799.1	ks_quality_p_value=0.967709	log10_base_likelihood=-106.665	log10_qual_likelihood_position_model=9.20216	log10_strand_likelihood_position_model=0.948361	new_cov=17/22	polymorphism_quality=101.7	quality=101.7	quality_position_model=5.01598e-99	ref_cov=113/117	tot_cov=130/139
RA	1437	.	NC_007779	815561	0	C	G	bias_e_value=4269290	bias_p_value=0.918852	fisher_strand_p_value=0.856532	frequency=1.273208e-01	genotype_quality=902.0	ks_quality_p_value=0.729934	log10_base_likelihood=-108.728	log10_qual_likelihood_position_model=9.81519	log10_strand_likelihood_position_model=0.845792	new_cov=16/18	polymorphism_quality=103.8	quality=103.8	quality_position_model=1.39433e-100	ref_cov=114/119	tot_cov=130/137
RA	1438	.	NC_007779	815573	0	G	C	bias_e_value=4643130	bias_p_value=0.999311	fisher_strand_p_value=1	frequency=1.137853e-01	genotype_quality=862.8	ks_quality_p_value=0.963106	log10_base_likelihood=-89.7682	log10_qual_likelihood_position_model=8.93503	log10_strand_likelihood_position_model=0.799783	new_cov=14/14	polymorphism_quality=84.8	quality=84.8	quality_position_model=1.6669e-82	ref_cov=108/110	tot_cov=122/124
RA	1439	.	NC_007779	815576	0	A	G	bias_e_value=3809120	bias_p_value=0.819813	fisher_strand_p_value=0.494753	frequency=9.125614e-02	genotype_quality=744.6	ks_quality_p_value=0.936583	log10_base_likelihood=-54.675	log10_qual_likelihood_position_model=9.52751	log10_strand_likelihood_position_model=0.889047	new_cov=12/9	polymorphism_quality=49.6	quality=49.6	quality_position_model=1.33215e-46	ref_cov=102/112	tot_cov=114/122
RA	1440	.	NC_007779	815579	0	T	A	bias_e_value=4172120	bias_p_value=0.897938	fisher_strand_p_value=0.809113	frequency=7.750511e-02	genotype_quality=834.8	ks_quality_p_value=0.721391	log10_base_likelihood=-48.7793	log10_qual_likelihood_position_model=9.23815	log10_strand_likelihood_position_model=0.736692	new_cov=8/10	polymorphism_quality=43.7	quality=43.7	quality_position_model=4.04395e-41	ref_cov=104/110	tot_cov=112/120
RA	1441	.	NC_007779	817515	0	G	T	bias_e_value=30.0012	bias_p_value=6.45696e-06	fisher_strand_p_value=4.11159e-07	frequency=6.870174e-02	genotype_quality=713.6	ks_quality_p_value=1	log10_base_likelihood=-11.0776	log10_qual_likelihood_position_model=16.6516	log10_strand_likelihood_position_model=6.4999	new_cov=0/21	polymorphism_quality=5.7	quality=5.7	quality_position_model=Inf	ref_cov=112/97	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=112/119
RA	1442	.	NC_007779	837856	1	.	A	bias_e_value=3929640	bias_p_value=0.84575	fisher_strand_p_value=0.498965	frequency=8.657455e-03	genotype_quality=1129.8	ks_quality_p_value=0.999698	log10_base_likelihood=-7.21055	log10_qual_likelihood_position_model=3.47007	log10_strand_likelihood_position_model=0.563373	new_cov=0/2	polymorphism_quality=1.7	quality=1.7	quality_position_model=5.67821e-05	ref_cov=110/119	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=110/121
RA	1443	.	NC_007779	846307	0	G	C	bias_e_value=4646320	bias_p_value=0.999997	fisher_strand_p_value=1	frequency=3.116035e-02	genotype_quality=1044.4	ks_quality_p_value=0.997734	log10_base_likelihood=-19.875	log10_qual_likelihood_position_model=4.6441	log10_strand_likelihood_position_model=0.56159	new_cov=4/4	polymorphism_quality=14.6	quality=14.6	quality_position_model=8.89987e-17	ref_cov=117/131	tot_cov=121/135
RA	1444	.	NC_007779	846315	0	T	C	bias_e_value=3490440	bias_p_value=0.751225	fisher_strand_p_value=0.384928	frequency=4.499817e-02	genotype_quality=945.8	ks_quality_p_value=0.996759	log10_base_likelihood=-25.0976	log10_qual_likelihood_position_model=7.65485	log10_strand_likelihood_position_model=0.832842	new_cov=4/8	polymorphism_quality=19.9	quality=19.9	quality_position_model=9.60526e-19	ref_cov=121/131	tot_cov=125/140
RA	1445	.	NC_007779	846316	0	C	G	bias_e_value=3501040	bias_p_value=0.753506	fisher_strand_p_value=0.386209	frequency=4.513454e-02	genotype_quality=1019.9	ks_quality_p_value=0.999637	log10_base_likelihood=-26.8139	log10_qual_likelihood_position_model=9.1919	log10_strand_likelihood_position_model=0.826764	new_cov=4/8	polymorphism_quality=21.6	quality=21.6	quality_position_model=6.23485e-19	ref_cov=120/131	tot_cov=124/140
RA	1446	.	NC_007779	846322	0	C	G	bias_e_value=4222860	bias_p_value=0.90886	fisher_strand_p_value=0.604664	frequency=5.599403e-02	genotype_quality=1060.6	ks_quality_p_value=1	log10_base_likelihood=-39.1439	log10_qual_likelihood_position_model=7.7207	log10_strand_likelihood_position_model=0.74782	new_cov=6/9	polymorphism_quality=34.0	quality=34.0	quality_position_model=6.11375e-33	ref_cov=119/130	tot_cov=125/139
RA	1447	.	NC_007779	846328	0	C	A	bias_e_value=3612250	bias_p_value=0.777442	fisher_strand_p_value=0.412123	frequency=5.014896e-02	genotype_quality=1080.5	ks_quality_p_value=1	log10_base_likelihood=-23.6503	log10_qual_likelihood_position_model=17.1268	log10_strand_likelihood_position_model=0.888595	new_cov=5/9	polymorphism_quality=18.4	quality=18.4	quality_position_model=1.52192e-07	ref_cov=128/128	tot_cov=133/137
RA	1448	.	NC_007779	846331	0	T	C	bias_e_value=3616040	bias_p_value=0.778257	fisher_strand_p_value=0.415992	frequency=5.413914e-02	genotype_quality=933.2	ks_quality_p_value=0.992909	log10_base_likelihood=-32.4976	log10_qual_likelihood_position_model=10.0171	log10_strand_likelihood_position_model=0.848914	new_cov=5/9	polymorphism_quality=27.3	quality=27.3	quality_position_model=8.03094e-24	ref_cov=119/125	tot_cov=124/134
RA	1449	.	NC_007779	846333	0	C	T	bias_e_value=3629520	bias_p_value=0.781158	fisher_strand_p_value=0.417086	frequency=5.421543e-02	genotype_quality=974.2	ks_quality_p_value=0.998208	log10_base_likelihood=-28.4277	log10_qual_likelihood_position_model=9.82229	log10_strand_likelihood_position_model=0.842559	new_cov=5/9	polymorphism_quality=23.2	quality=23.2	quality_position_model=6.53633e-20	ref_cov=118/125	reject=SURROUNDING_HOMOPOLYMER	tot_cov=124/134
RA	1450	.	NC_007779	846334	0	T	A	bias_e_value=4207120	bias_p_value=0.905472	fisher_strand_p_value=0.600585	frequency=5.803204e-02	genotype_quality=983.2	ks_quality_p_value=0.995703	log10_base_likelihood=-37.6332	log10_qual_likelihood_position_model=14.6785	log10_strand_likelihood_position_model=0.762817	new_cov=6/9	polymorphism_quality=32.5	quality=32.5	quality_position_model=2.18256e-24	ref_cov=118/125	tot_cov=124/134
RA	1451	.	NC_007779	846337	0	A	G	bias_e_value=4225960	bias_p_value=0.909526	fisher_strand_p_value=0.60708	frequency=5.612803e-02	genotype_quality=944.1	ks_quality_p_value=0.998204	log10_base_likelihood=-33.372	log10_qual_likelihood_position_model=11.2663	log10_strand_likelihood_position_model=0.740832	new_cov=6/9	polymorphism_quality=28.2	quality=28.2	quality_position_model=1.49321e-23	ref_cov=119/132	tot_cov=125/142
RA	1452	.	NC_007779	846344	0	T	C	bias_e_value=4228620	bias_p_value=0.910098	fisher_strand_p_value=0.608186	frequency=5.516577e-02	genotype_quality=969.2	ks_quality_p_value=0.998272	log10_base_likelihood=-33.2392	log10_qual_likelihood_position_model=9.65949	log10_strand_likelihood_position_model=0.738524	new_cov=6/9	polymorphism_quality=28.1	quality=28.1	quality_position_model=4.82524e-25	ref_cov=121/135	tot_cov=127/144
RA	1453	.	NC_007779	846346	0	C	A	bias_e_value=4530660	bias_p_value=0.975105	fisher_strand_p_value=0.790992	frequency=5.628014e-02	genotype_quality=1072.4	ks_quality_p_value=0.992836	log10_base_likelihood=-36.6761	log10_qual_likelihood_position_model=10.8827	log10_strand_likelihood_position_model=0.733758	new_cov=6/9	polymorphism_quality=31.5	quality=31.5	quality_position_model=2.78809e-27	ref_cov=118/133	tot_cov=124/142
RA	1454	.	NC_007779	846352	0	A	G	bias_e_value=4197970	bias_p_value=0.903502	fisher_strand_p_value=0.598515	frequency=5.637741e-02	genotype_quality=933.8	ks_quality_p_value=0.992781	log10_base_likelihood=-31.9409	log10_qual_likelihood_position_model=11.7097	log10_strand_likelihood_position_model=0.777255	new_cov=6/9	polymorphism_quality=26.8	quality=26.8	quality_position_model=1.27327e-21	ref_cov=123/127	tot_cov=129/136
RA	1455	.	NC_007779	846355	0	C	G	bias_e_value=4204100	bias_p_value=0.904821	fisher_strand_p_value=0.597017	frequency=5.718660e-02	genotype_quality=1054.1	ks_quality_p_value=0.999537	log10_base_likelihood=-38.9439	log10_qual_likelihood_position_model=8.94043	log10_strand_likelihood_position_model=0.790934	new_cov=6/9	polymorphism_quality=33.8	quality=33.8	quality_position_model=1.81805e-31	ref_cov=123/124	tot_cov=129/133
RA	1456	.	NC_007779	846358	0	C	G	bias_e_value=4208220	bias_p_value=0.905708	fisher_strand_p_value=0.598463	frequency=5.690622e-02	genotype_quality=1062.2	ks_quality_p_value=1	log10_base_likelihood=-36.0429	log10_qual_likelihood_position_model=13.6536	log10_strand_likelihood_position_model=0.776964	new_cov=6/9	polymorphism_quality=30.9	quality=30.9	quality_position_model=8.39708e-24	ref_cov=122/126	tot_cov=128/135
RA	1457	.	NC_007779	846361	0	C	A	bias_e_value=4184890	bias_p_value=0.900686	fisher_strand_p_value=0.596153	frequency=5.892611e-02	genotype_quality=1003.7	ks_quality_p_value=0.987721	log10_base_likelihood=-36.0035	log10_qual_likelihood_position_model=13.4492	log10_strand_likelihood_position_model=0.800353	new_cov=6/9	polymorphism_quality=30.8	quality=30.8	quality_position_model=6.04118e-24	ref_cov=120/119	tot_cov=126/128
RA	1458	.	NC_007779	846364	0	T	C	bias_e_value=3693810	bias_p_value=0.794996	fisher_strand_p_value=0.432706	frequency=5.996132e-02	genotype_quality=884.2	ks_quality_p_value=0.999485	log10_base_likelihood=-34.3156	log10_qual_likelihood_position_model=11.1822	log10_strand_likelihood_position_model=0.840015	new_cov=6/9	polymorphism_quality=29.1	quality=29.1	quality_position_model=1.72388e-24	ref_cov=121/113	tot_cov=127/122
RA	1459	.	NC_007779	846367	1	.	C	bias_e_value=768662	bias_p_value=0.165434	fisher_strand_p_value=0.239053	frequency=8.031845e-03	genotype_quality=1227.8	ks_quality_p_value=0.163029	log10_base_likelihood=-8.16302	log10_qual_likelihood_position_model=1.36905	log10_strand_likelihood_position_model=0.621506	new_cov=0/2	polymorphism_quality=2.7	quality=2.7	quality_position_model=4.22943e-08	ref_cov=127/120	reject=POLYMORPHISM_STRAND	tot_cov=127/122
RA	1460	.	NC_007779	846368	0	T	C	bias_e_value=3694490	bias_p_value=0.795142	fisher_strand_p_value=0.432877	frequency=5.959988e-02	genotype_quality=888.4	ks_quality_p_value=0.999494	log10_base_likelihood=-34.387	log10_qual_likelihood_position_model=10.6686	log10_strand_likelihood_position_model=0.839799	new_cov=6/9	polymorphism_quality=29.2	quality=29.2	quality_position_model=4.4239e-25	ref_cov=122/114	tot_cov=128/123
RA	1461	.	NC_007779	846369	0	G	C	bias_e_value=4527160	bias_p_value=0.974351	fisher_strand_p_value=0.783605	frequency=5.182171e-02	genotype_quality=1006.1	ks_quality_p_value=0.998246	log10_base_likelihood=-32.5082	log10_qual_likelihood_position_model=11.5238	log10_strand_likelihood_position_model=0.672052	new_cov=6/7	polymorphism_quality=27.3	quality=27.3	quality_position_model=1.72741e-22	ref_cov=120/117	tot_cov=126/124
RA	1462	.	NC_007779	846371	0	C	A	bias_e_value=4529520	bias_p_value=0.97486	fisher_strand_p_value=0.784313	frequency=5.252266e-02	genotype_quality=973.7	ks_quality_p_value=1	log10_base_likelihood=-27.8385	log10_qual_likelihood_position_model=12.1966	log10_strand_likelihood_position_model=0.669904	new_cov=6/7	polymorphism_quality=22.6	quality=22.6	quality_position_model=4.38878e-17	ref_cov=117/115	tot_cov=123/122
RA	1463	.	NC_007779	846372	0	G	C	bias_e_value=4646290	bias_p_value=0.999992	fisher_strand_p_value=1	frequency=5.273104e-02	genotype_quality=984.5	ks_quality_p_value=0.995926	log10_base_likelihood=-32.1359	log10_qual_likelihood_position_model=9.47882	log10_strand_likelihood_position_model=0.668036	new_cov=6/7	polymorphism_quality=27.0	quality=27.0	quality_position_model=3.49754e-24	ref_cov=117/116	reject=SURROUNDING_HOMOPOLYMER	tot_cov=123/123
RA	1464	.	NC_007779	846373	0	C	G	bias_e_value=4521890	bias_p_value=0.973217	fisher_strand_p_value=0.783429	frequency=5.320454e-02	genotype_quality=978.3	ks_quality_p_value=0.992647	log10_base_likelihood=-34.6447	log10_qual_likelihood_position_model=7.73908	log10_strand_likelihood_position_model=0.671887	new_cov=6/7	polymorphism_quality=29.5	quality=29.5	quality_position_model=1.82562e-28	ref_cov=117/114	tot_cov=123/123
RA	1465	.	NC_007779	846376	0	T	C	bias_e_value=3544580	bias_p_value=0.762878	fisher_strand_p_value=0.439862	frequency=5.776215e-02	genotype_quality=906.8	ks_quality_p_value=0.900396	log10_base_likelihood=-35.4808	log10_qual_likelihood_position_model=6.569	log10_strand_likelihood_position_model=0.816463	new_cov=6/9	polymorphism_quality=30.3	quality=30.3	quality_position_model=2.42749e-30	ref_cov=124/120	tot_cov=130/129
RA	1466	.	NC_007779	846400	0	T	C	bias_e_value=1342830	bias_p_value=0.28901	fisher_strand_p_value=1	frequency=1.165709e-01	genotype_quality=744.8	ks_quality_p_value=0.082771	log10_base_likelihood=-79.5048	log10_qual_likelihood_position_model=10.4401	log10_strand_likelihood_position_model=0.81457	new_cov=16/14	polymorphism_quality=74.5	quality=74.5	quality_position_model=1.09542e-70	ref_cov=116/106	tot_cov=132/120
RA	1467	.	NC_007779	846406	0	A	G	bias_e_value=2005120	bias_p_value=0.431549	fisher_strand_p_value=0.254965	frequency=9.064436e-02	genotype_quality=764.9	ks_quality_p_value=0.582093	log10_base_likelihood=-53.7417	log10_qual_likelihood_position_model=9.47071	log10_strand_likelihood_position_model=1.06769	new_cov=14/7	polymorphism_quality=48.7	quality=48.7	quality_position_model=1.53067e-45	ref_cov=110/100	tot_cov=124/107
RA	1468	.	NC_007779	846409	0	C	G	bias_e_value=1764940	bias_p_value=0.379856	fisher_strand_p_value=0.360372	frequency=8.213520e-02	genotype_quality=980.2	ks_quality_p_value=0.340124	log10_base_likelihood=-61.6368	log10_qual_likelihood_position_model=9.71829	log10_strand_likelihood_position_model=1.00619	new_cov=14/7	polymorphism_quality=56.6	quality=56.6	quality_position_model=2.75765e-53	ref_cov=126/108	tot_cov=140/115
RA	1469	.	NC_007779	846415	0	C	T	bias_e_value=596699	bias_p_value=0.128424	fisher_strand_p_value=0.232049	frequency=7.850742e-02	genotype_quality=853.4	ks_quality_p_value=0.121036	log10_base_likelihood=-46.1068	log10_qual_likelihood_position_model=7.239	log10_strand_likelihood_position_model=1.10617	new_cov=13/6	polymorphism_quality=41.0	quality=41.0	quality_position_model=4.52359e-40	ref_cov=116/106	tot_cov=129/112
RA	1470	.	NC_007779	846417	0	T	G	bias_e_value=1497490	bias_p_value=0.322294	fisher_strand_p_value=0.231779	frequency=8.128405e-02	genotype_quality=803.7	ks_quality_p_value=0.416635	log10_base_likelihood=-59.1295	log10_qual_likelihood_position_model=13.2241	log10_strand_likelihood_position_model=1.10027	new_cov=13/6	polymorphism_quality=54.1	quality=54.1	quality_position_model=3.76033e-47	ref_cov=112/102	tot_cov=125/108
RA	1471	.	NC_007779	846418	0	T	C	bias_e_value=1994770	bias_p_value=0.429322	fisher_strand_p_value=0.233732	frequency=7.601309e-02	genotype_quality=827.4	ks_quality_p_value=0.629986	log10_base_likelihood=-44.5527	log10_qual_likelihood_position_model=10.9924	log10_strand_likelihood_position_model=1.08743	new_cov=13/6	polymorphism_quality=39.4	quality=39.4	quality_position_model=9.47511e-35	ref_cov=119/107	tot_cov=132/113
RA	1472	.	NC_007779	846424	0	C	T	bias_e_value=2656910	bias_p_value=0.571831	fisher_strand_p_value=0.232599	frequency=7.342529e-02	genotype_quality=906.1	ks_quality_p_value=1	log10_base_likelihood=-40.2254	log10_qual_likelihood_position_model=10.8084	log10_strand_likelihood_position_model=1.11564	new_cov=13/6	polymorphism_quality=35.1	quality=35.1	quality_position_model=1.50501e-30	ref_cov=123/113	tot_cov=136/119
RA	1473	.	NC_007779	846426	0	T	C	bias_e_value=1870450	bias_p_value=0.402565	fisher_strand_p_value=0.160226	frequency=7.650518e-02	genotype_quality=831.8	ks_quality_p_value=0.833948	log10_base_likelihood=-48.2588	log10_qual_likelihood_position_model=9.11266	log10_strand_likelihood_position_model=1.16679	new_cov=13/6	polymorphism_quality=43.2	quality=43.2	quality_position_model=2.73236e-40	ref_cov=117/112	tot_cov=130/118
RA	1474	.	NC_007779	846429	0	C	T	bias_e_value=1919420	bias_p_value=0.413105	fisher_strand_p_value=0.139271	frequency=7.371044e-02	genotype_quality=878.7	ks_quality_p_value=0.997392	log10_base_likelihood=-39.9688	log10_qual_likelihood_position_model=10.0904	log10_strand_likelihood_position_model=1.32968	new_cov=13/5	polymorphism_quality=34.8	quality=34.8	quality_position_model=8.47862e-31	ref_cov=116/110	tot_cov=129/116
RA	1475	.	NC_007779	846430	0	C	G	bias_e_value=2636720	bias_p_value=0.567485	fisher_strand_p_value=0.231055	frequency=7.748318e-02	genotype_quality=951.4	ks_quality_p_value=0.993842	log10_base_likelihood=-53.4021	log10_qual_likelihood_position_model=10.3142	log10_strand_likelihood_position_model=1.15379	new_cov=13/6	polymorphism_quality=48.3	quality=48.3	quality_position_model=2.887e-44	ref_cov=116/110	tot_cov=129/116
RA	1476	.	NC_007779	846436	0	C	T	bias_e_value=3229710	bias_p_value=0.69511	fisher_strand_p_value=0.336164	frequency=8.021021e-02	genotype_quality=812.5	ks_quality_p_value=0.979655	log10_base_likelihood=-41.3302	log10_qual_likelihood_position_model=12.2659	log10_strand_likelihood_position_model=1.00733	new_cov=13/6	polymorphism_quality=36.2	quality=36.2	quality_position_model=2.65317e-30	ref_cov=118/99	tot_cov=131/105
RA	1477	.	NC_007779	846439	0	G	A	bias_e_value=3264680	bias_p_value=0.702636	fisher_strand_p_value=0.336164	frequency=7.971430e-02	genotype_quality=824.8	ks_quality_p_value=1	log10_base_likelihood=-40.3003	log10_qual_likelihood_position_model=13.2205	log10_strand_likelihood_position_model=1.00733	new_cov=13/6	polymorphism_quality=35.2	quality=35.2	quality_position_model=2.65439e-28	ref_cov=118/99	tot_cov=131/105
RA	1478	.	NC_007779	846442	0	G	A	bias_e_value=2602950	bias_p_value=0.560216	fisher_strand_p_value=0.234731	frequency=7.705259e-02	genotype_quality=856.5	ks_quality_p_value=0.957383	log10_base_likelihood=-43.7037	log10_qual_likelihood_position_model=10.883	log10_strand_likelihood_position_model=1.07767	new_cov=13/6	polymorphism_quality=38.6	quality=38.6	quality_position_model=5.14388e-34	ref_cov=120/107	tot_cov=133/113
RA	1479	.	NC_007779	846448	0	C	G	bias_e_value=2657940	bias_p_value=0.572051	fisher_strand_p_value=0.232909	frequency=7.704306e-02	genotype_quality=948.0	ks_quality_p_value=0.99932	log10_base_likelihood=-53.7886	log10_qual_likelihood_position_model=8.01337	log10_strand_likelihood_position_model=1.09886	new_cov=13/6	polymorphism_quality=48.7	quality=48.7	quality_position_model=5.06541e-47	ref_cov=119/108	tot_cov=132/114
RA	1480	.	NC_007779	846451	0	C	A	bias_e_value=1223890	bias_p_value=0.263411	fisher_strand_p_value=0.158669	frequency=7.810163e-02	genotype_quality=914.5	ks_quality_p_value=0.458509	log10_base_likelihood=-47.8508	log10_qual_likelihood_position_model=7.83648	log10_strand_likelihood_position_model=1.17617	new_cov=13/6	polymorphism_quality=42.8	quality=42.8	quality_position_model=3.7405e-41	ref_cov=114/110	tot_cov=127/116
RA	1481	.	NC_007779	846454	0	A	T	bias_e_value=1996090	bias_p_value=0.429605	fisher_strand_p_value=0.22739	frequency=7.553959e-02	genotype_quality=846.7	ks_quality_p_value=0.648207	log10_base_likelihood=-50.0022	log10_qual_likelihood_position_model=10.4467	log10_strand_likelihood_position_model=1.05767	new_cov=12/6	polymorphism_quality=44.9	quality=44.9	quality_position_model=8.22446e-41	ref_cov=112/108	tot_cov=124/114
RA	1482	.	NC_007779	846463	0	T	C	bias_e_value=2010690	bias_p_value=0.432748	fisher_strand_p_value=0.224035	frequency=7.108927e-02	genotype_quality=841.1	ks_quality_p_value=0.665264	log10_base_likelihood=-46.5329	log10_qual_likelihood_position_model=6.59669	log10_strand_likelihood_position_model=1.0929	new_cov=12/6	polymorphism_quality=41.4	quality=41.4	quality_position_model=3.69603e-41	ref_cov=118/117	tot_cov=130/123
RA	1483	.	NC_007779	846466	0	A	G	bias_e_value=3819040	bias_p_value=0.821948	fisher_strand_p_value=0.501182	frequency=3.703690e-02	genotype_quality=855.9	ks_quality_p_value=0.930126	log10_base_likelihood=-17.5594	log10_qual_likelihood_position_model=6.45394	log10_strand_likelihood_position_model=0.747682	new_cov=6/3	polymorphism_quality=12.2	quality=12.2	quality_position_model=2.15783e-12	ref_cov=118/114	tot_cov=124/117
RA	1484	.	NC_007779	846469	0	A	G	bias_e_value=3898090	bias_p_value=0.838961	fisher_strand_p_value=0.500104	frequency=3.853321e-02	genotype_quality=818.2	ks_quality_p_value=0.978169	log10_base_likelihood=-18.477	log10_qual_likelihood_position_model=5.63358	log10_strand_likelihood_position_model=0.757115	new_cov=6/3	polymorphism_quality=13.2	quality=13.2	quality_position_model=3.74256e-14	ref_cov=113/111	tot_cov=119/115
RA	1485	.	NC_007779	846472	0	A	C	bias_e_value=3897400	bias_p_value=0.838812	fisher_strand_p_value=0.499796	frequency=3.843880e-02	genotype_quality=889.3	ks_quality_p_value=0.978357	log10_base_likelihood=-25.1294	log10_qual_likelihood_position_model=5.94175	log10_strand_likelihood_position_model=0.762668	new_cov=6/3	polymorphism_quality=19.9	quality=19.9	quality_position_model=1.39778e-20	ref_cov=113/112	tot_cov=119/115
RA	1486	.	NC_007779	846475	0	A	G	bias_e_value=1079750	bias_p_value=0.232388	fisher_strand_p_value=0.0614526	frequency=2.043915e-02	genotype_quality=917.8	ks_quality_p_value=0.997167	log10_base_likelihood=-7.26527	log10_qual_likelihood_position_model=6.55717	log10_strand_likelihood_position_model=1.41588	new_cov=5/0	polymorphism_quality=1.8	quality=1.8	quality_position_model=Inf	ref_cov=121/114	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=126/114
RA	1487	.	NC_007779	847635	0	A	C	bias_e_value=0.101277	bias_p_value=2.17972e-08	fisher_strand_p_value=1.00357e-09	frequency=6.885958e-02	genotype_quality=642.3	ks_quality_p_value=1	log10_base_likelihood=-12.4883	log10_qual_likelihood_position_model=22.0101	log10_strand_likelihood_position_model=8.99845	new_cov=17/0	polymorphism_quality=7.1	quality=7.1	quality_position_model=Inf	ref_cov=45/128	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=62/128
RA	1488	.	NC_007779	853114	0	C	G	bias_e_value=0.056867	bias_p_value=1.22391e-08	fisher_strand_p_value=5.48241e-10	frequency=9.056520e-02	genotype_quality=455.1	ks_quality_p_value=1	log10_base_likelihood=-15.9218	log10_qual_likelihood_position_model=14.0418	log10_strand_likelihood_position_model=9.26103	new_cov=0/12	polymorphism_quality=10.6	quality=10.6	quality_position_model=Inf	ref_cov=99/14	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=99/26
RA	1489	.	NC_007779	881117	1	.	T	bias_e_value=3520510	bias_p_value=0.757697	fisher_strand_p_value=1	frequency=8.620262e-03	genotype_quality=1140.6	ks_quality_p_value=0.390499	log10_base_likelihood=-8.411	log10_qual_likelihood_position_model=1.76062	log10_strand_likelihood_position_model=0.302394	new_cov=1/1	polymorphism_quality=2.9	quality=2.9	quality_position_model=2.78634e-08	ref_cov=105/125	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=106/126
RA	1490	.	NC_007779	887234	0	C	A	frequency=1	genotype_quality=697.8	new_cov=109/77	quality=697.8	ref_cov=0/0	tot_cov=109/77
RA	1491	.	NC_007779	888436	0	T	G	bias_e_value=2.67116e-05	bias_p_value=5.74896e-12	fisher_strand_p_value=1.89779e-13	frequency=9.763813e-02	genotype_quality=559.9	ks_quality_p_value=1	log10_base_likelihood=-11.7459	log10_qual_likelihood_position_model=28.2271	log10_strand_likelihood_position_model=12.7218	new_cov=34/0	polymorphism_quality=6.3	quality=6.3	quality_position_model=Inf	ref_cov=66/113	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=100/113
RA	1492	.	NC_007779	894943	0	T	G	bias_e_value=1.49503e-09	bias_p_value=3.21766e-16	fisher_strand_p_value=7.97026e-18	frequency=1.153154e-01	genotype_quality=505.9	ks_quality_p_value=1	log10_base_likelihood=-18.5929	log10_qual_likelihood_position_model=27.3082	log10_strand_likelihood_position_model=17.0985	new_cov=26/0	polymorphism_quality=13.3	quality=13.3	quality_position_model=Inf	ref_cov=23/126	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=49/126
RA	1493	.	NC_007779	901814	0	A	C	bias_e_value=93.9662	bias_p_value=2.02237e-05	fisher_strand_p_value=1.39652e-06	frequency=7.598734e-02	genotype_quality=495.7	ks_quality_p_value=1	log10_base_likelihood=-6.15799	log10_qual_likelihood_position_model=16.8593	log10_strand_likelihood_position_model=5.9919	new_cov=0/19	polymorphism_quality=0.6	quality=0.6	quality_position_model=Inf	ref_cov=84/69	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=84/88
RA	1494	.	NC_007779	904838	0	C	A	bias_e_value=0.000145695	bias_p_value=3.13571e-11	fisher_strand_p_value=2.10176e-12	frequency=1.319127e-01	genotype_quality=693.9	ks_quality_p_value=0.522814	log10_base_likelihood=-29.4852	log10_qual_likelihood_position_model=30.0369	log10_strand_likelihood_position_model=11.7262	new_cov=36/0	polymorphism_quality=24.3	quality=24.3	quality_position_model=Inf	ref_cov=87/117	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=124/117
RA	1495	.	NC_007779	947970	0	C	A	bias_e_value=1670.43	bias_p_value=0.000359516	fisher_strand_p_value=3.1645e-05	frequency=6.634712e-02	genotype_quality=658.0	ks_quality_p_value=1	log10_base_likelihood=-14.7935	log10_qual_likelihood_position_model=11.6517	log10_strand_likelihood_position_model=4.52735	new_cov=16/0	polymorphism_quality=9.4	quality=9.4	quality_position_model=Inf	ref_cov=94/94	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=110/94
RA	1496	.	NC_007779	954820	0	A	C	bias_e_value=3.3194e-11	bias_p_value=7.14414e-18	fisher_strand_p_value=1.61374e-19	frequency=2.012873e-01	genotype_quality=382.1	ks_quality_p_value=1	log10_base_likelihood=-28.3951	log10_qual_likelihood_position_model=32.5309	log10_strand_likelihood_position_model=18.7922	new_cov=0/47	polymorphism_quality=23.2	quality=23.2	quality_position_model=Inf	ref_cov=92/39	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=92/86
RA	1497	.	NC_007779	969494	0	C	A	bias_e_value=0.199313	bias_p_value=4.28968e-08	fisher_strand_p_value=2.04447e-09	frequency=9.550524e-02	genotype_quality=573.1	ks_quality_p_value=0.998687	log10_base_likelihood=-17.7659	log10_qual_likelihood_position_model=15.8407	log10_strand_likelihood_position_model=8.68942	new_cov=23/0	polymorphism_quality=12.5	quality=12.5	quality_position_model=Inf	ref_cov=67/109	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=91/110
RA	1498	.	NC_007779	987422	1	.	T	bias_e_value=2220930	bias_p_value=0.477996	fisher_strand_p_value=0.246073	frequency=1.047134e-02	genotype_quality=904.6	ks_quality_p_value=0.70646	log10_base_likelihood=-8.03127	log10_qual_likelihood_position_model=2.10342	log10_strand_likelihood_position_model=0.608936	new_cov=2/0	polymorphism_quality=2.5	quality=2.5	quality_position_model=3.23646e-07	ref_cov=93/96	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=95/96
RA	1499	.	NC_007779	987436	0	A	C	bias_e_value=1.99924	bias_p_value=4.30283e-07	fisher_strand_p_value=2.31572e-08	frequency=6.946039e-02	genotype_quality=549.0	ks_quality_p_value=1	log10_base_likelihood=-5.97517	log10_qual_likelihood_position_model=24.4366	log10_strand_likelihood_position_model=7.66174	new_cov=0/27	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=89/83	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=89/110
RA	1500	.	NC_007779	987574	0	G	T	frequency=1	genotype_quality=774.8	new_cov=74/117	quality=774.8	ref_cov=0/0	tot_cov=74/117
RA	1501	.	NC_007779	987916	0	T	G	bias_e_value=21.4262	bias_p_value=4.61141e-06	fisher_strand_p_value=2.87073e-07	frequency=4.065895e-02	genotype_quality=362.6	ks_quality_p_value=1	log10_base_likelihood=-8.56073	log10_qual_likelihood_position_model=8.12747	log10_strand_likelihood_position_model=6.54201	new_cov=6/0	polymorphism_quality=3.1	quality=3.1	quality_position_model=Inf	ref_cov=5/94	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=11/94
RA	1502	.	NC_007779	1002413	0	T	G	bias_e_value=1.64614e-06	bias_p_value=3.54288e-13	fisher_strand_p_value=1.06809e-14	frequency=6.776190e-02	genotype_quality=606.5	ks_quality_p_value=1	log10_base_likelihood=-5.76298	log10_qual_likelihood_position_model=25.7076	log10_strand_likelihood_position_model=13.9714	new_cov=28/0	polymorphism_quality=0.2	quality=0.2	quality_position_model=Inf	ref_cov=47/131	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=75/131
RA	1503	.	NC_007779	1013042	0	G	C	bias_e_value=0.00446369	bias_p_value=9.6069e-10	fisher_strand_p_value=3.84561e-11	frequency=1.145372e-01	genotype_quality=480.9	ks_quality_p_value=1	log10_base_likelihood=-27.2089	log10_qual_likelihood_position_model=14.7432	log10_strand_likelihood_position_model=10.415	new_cov=0/16	polymorphism_quality=22.0	quality=22.0	quality_position_model=0.000921153	ref_cov=101/21	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=102/37
RA	1504	.	NC_007779	1019391	0	A	.	bias_e_value=4644790	bias_p_value=0.999668	fisher_strand_p_value=1	frequency=1.090050e-02	genotype_quality=1098.2	ks_quality_p_value=0.974346	log10_base_likelihood=-7.97283	log10_qual_likelihood_position_model=1.97988	log10_strand_likelihood_position_model=0.407926	new_cov=1/2	polymorphism_quality=2.5	quality=2.5	quality_position_model=1.71424e-07	ref_cov=131/141	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=132/143
RA	1505	.	NC_007779	1037604	0	C	G	bias_e_value=2.60715e-05	bias_p_value=5.6112e-12	fisher_strand_p_value=1.85078e-13	frequency=1.474104e-01	genotype_quality=369.0	ks_quality_p_value=1	log10_base_likelihood=-25.3381	log10_qual_likelihood_position_model=17.1994	log10_strand_likelihood_position_model=12.7326	new_cov=17/0	polymorphism_quality=20.1	quality=20.1	quality_position_model=Inf	ref_cov=10/84	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=27/84
RA	1506	.	NC_007779	1050592	0	A	C	frequency=1	genotype_quality=-0.1	new_cov=1/0	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1507	.	NC_007779	1050595	0	C	T	frequency=1	genotype_quality=-0.1	new_cov=1/0	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1508	.	NC_007779	1050643	0	G	T	frequency=1	genotype_quality=-0.1	new_cov=1/0	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1509	.	NC_007779	1058914	0	A	C	bias_e_value=5.97637	bias_p_value=1.28626e-06	fisher_strand_p_value=7.39009e-08	frequency=4.719591e-02	genotype_quality=507.4	ks_quality_p_value=0.999061	log10_base_likelihood=-8.94733	log10_qual_likelihood_position_model=12.6964	log10_strand_likelihood_position_model=7.13135	new_cov=0/10	polymorphism_quality=3.5	quality=3.5	quality_position_model=Inf	ref_cov=118/23	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=118/33
RA	1510	.	NC_007779	1058923	0	T	C	bias_e_value=0.478098	bias_p_value=1.02898e-07	fisher_strand_p_value=5.12192e-09	frequency=6.920624e-02	genotype_quality=573.4	ks_quality_p_value=1	log10_base_likelihood=-7.08247	log10_qual_likelihood_position_model=19.5132	log10_strand_likelihood_position_model=8.29057	new_cov=0/16	polymorphism_quality=1.6	quality=1.6	quality_position_model=Inf	ref_cov=120/44	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=120/60
RA	1511	.	NC_007779	1086017	0	A	C	bias_e_value=4.21118e-07	bias_p_value=9.06345e-14	fisher_strand_p_value=2.62138e-15	frequency=1.443090e-01	genotype_quality=526.6	ks_quality_p_value=1	log10_base_likelihood=-25.5223	log10_qual_likelihood_position_model=27.8633	log10_strand_likelihood_position_model=14.6012	new_cov=0/43	polymorphism_quality=20.3	quality=20.3	quality_position_model=Inf	ref_cov=104/67	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=104/110
RA	1512	.	NC_007779	1093686	0	T	C	frequency=1	genotype_quality=949.5	new_cov=96/124	quality=949.5	ref_cov=0/0	tot_cov=96/124
RA	1513	.	NC_007779	1097402	1	.	A	bias_e_value=4466880	bias_p_value=0.961377	fisher_strand_p_value=1	frequency=6.042480e-03	genotype_quality=1298.9	ks_quality_p_value=0.735266	log10_base_likelihood=-7.90918	log10_qual_likelihood_position_model=1.30004	log10_strand_likelihood_position_model=0.301468	new_cov=1/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=3.06655e-08	ref_cov=175/154	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=176/155
RA	1514	.	NC_007779	1097580	0	C	T	bias_e_value=406079	bias_p_value=0.0873978	fisher_strand_p_value=0.250069	frequency=2.243586e-01	genotype_quality=596.9	ks_quality_p_value=0.0690929	log10_base_likelihood=-175.247	log10_qual_likelihood_position_model=20.7114	log10_strand_likelihood_position_model=1.23686	new_cov=24/38	polymorphism_quality=170.4	quality=170.4	quality_position_model=6.54576e-156	ref_cov=101/113	tot_cov=125/151
RA	1515	.	NC_007779	1097764	1	.	A	bias_e_value=4480890	bias_p_value=0.964393	fisher_strand_p_value=1	frequency=4.210472e-03	genotype_quality=1914.3	ks_quality_p_value=0.745295	log10_base_likelihood=-7.14698	log10_qual_likelihood_position_model=2.13922	log10_strand_likelihood_position_model=0.308324	new_cov=1/1	polymorphism_quality=1.6	quality=1.6	quality_position_model=1.42722e-06	ref_cov=204/269	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=205/270
RA	1516	.	NC_007779	1105181	1	.	T	bias_e_value=4646320	bias_p_value=0.999997	fisher_strand_p_value=1	frequency=1.004982e-02	genotype_quality=968.1	ks_quality_p_value=0.997452	log10_base_likelihood=-7.78254	log10_qual_likelihood_position_model=3.01573	log10_strand_likelihood_position_model=0.29938	new_cov=1/1	polymorphism_quality=2.3	quality=2.3	quality_position_model=2.49252e-06	ref_cov=102/95	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=103/96
RA	1517	.	NC_007779	1116582	0	G	C	bias_e_value=4.03134e-13	bias_p_value=8.67639e-20	fisher_strand_p_value=1.77874e-21	frequency=1.538801e-01	genotype_quality=363.3	ks_quality_p_value=1	log10_base_likelihood=-40.2389	log10_qual_likelihood_position_model=15.0263	log10_strand_likelihood_position_model=20.7499	new_cov=0/18	polymorphism_quality=35.1	quality=35.1	quality_position_model=2.52076e-06	ref_cov=98/0	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=98/18
RA	1518	.	NC_007779	1144310	0	T	G	bias_e_value=0.000663302	bias_p_value=1.42758e-10	fisher_strand_p_value=5.29433e-12	frequency=6.475544e-02	genotype_quality=617.1	ks_quality_p_value=1	log10_base_likelihood=-7.92255	log10_qual_likelihood_position_model=28.6624	log10_strand_likelihood_position_model=11.2762	new_cov=25/0	polymorphism_quality=2.4	quality=2.4	quality_position_model=Inf	ref_cov=56/125	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=81/125
RA	1519	.	NC_007779	1151485	0	C	A	bias_e_value=49746.2	bias_p_value=0.0107066	fisher_strand_p_value=0.00141626	frequency=4.062462e-02	genotype_quality=787.3	ks_quality_p_value=1	log10_base_likelihood=-8.39551	log10_qual_likelihood_position_model=10.5959	log10_strand_likelihood_position_model=3.08726	new_cov=12/0	polymorphism_quality=2.9	quality=2.9	quality_position_model=Inf	ref_cov=121/103	reject=POLYMORPHISM_STRAND	tot_cov=134/103
RA	1520	.	NC_007779	1158848	0	T	G	bias_e_value=8.11936e-19	bias_p_value=1.74748e-25	fisher_strand_p_value=2.81235e-27	frequency=1.715889e-01	genotype_quality=502.4	ks_quality_p_value=1	log10_base_likelihood=-21.2983	log10_qual_likelihood_position_model=38.6819	log10_strand_likelihood_position_model=26.5509	new_cov=51/0	polymorphism_quality=16.0	quality=16.0	quality_position_model=Inf	ref_cov=31/126	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=83/126
RA	1521	.	NC_007779	1163018	0	T	G	bias_e_value=1.95655	bias_p_value=4.21096e-07	fisher_strand_p_value=2.2635e-08	frequency=1.073461e-01	genotype_quality=499.6	ks_quality_p_value=1	log10_base_likelihood=-13.9787	log10_qual_likelihood_position_model=19.7989	log10_strand_likelihood_position_model=7.79106	new_cov=24/0	polymorphism_quality=8.6	quality=8.6	quality_position_model=Inf	ref_cov=68/89	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=92/89
RA	1522	.	NC_007779	1164942	0	A	G	bias_e_value=6.2007	bias_p_value=1.33454e-06	fisher_strand_p_value=7.67753e-08	frequency=8.230686e-02	genotype_quality=378.6	ks_quality_p_value=1	log10_base_likelihood=-9.7065	log10_qual_likelihood_position_model=12.8699	log10_strand_likelihood_position_model=7.11478	new_cov=11/0	polymorphism_quality=4.3	quality=4.3	quality_position_model=Inf	ref_cov=19/85	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=30/85
RA	1523	.	NC_007779	1164944	0	T	G	bias_e_value=0.00118889	bias_p_value=2.55876e-10	fisher_strand_p_value=9.70768e-12	frequency=8.004475e-02	genotype_quality=351.1	ks_quality_p_value=1	log10_base_likelihood=-6.71525	log10_qual_likelihood_position_model=18.0963	log10_strand_likelihood_position_model=11.0129	new_cov=16/0	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=14/85	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=30/85
RA	1524	.	NC_007779	1170573	0	C	T	frequency=1	genotype_quality=888.5	new_cov=132/86	quality=888.5	ref_cov=0/0	tot_cov=132/86
RA	1525	.	NC_007779	1174285	0	G	A	bias_e_value=4537710	bias_p_value=0.976621	fisher_strand_p_value=1	frequency=1.414299e-02	genotype_quality=853.0	ks_quality_p_value=0.791707	log10_base_likelihood=-5.63337	log10_qual_likelihood_position_model=1.48356	log10_strand_likelihood_position_model=0.392772	new_cov=1/2	polymorphism_quality=0.1	quality=0.1	quality_position_model=1.38491e-05	ref_cov=96/112	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=97/114
RA	1526	.	NC_007779	1177683	0	A	G	bias_e_value=2.87407e-11	bias_p_value=6.18568e-18	fisher_strand_p_value=1.39261e-19	frequency=1.219630e-01	genotype_quality=550.8	ks_quality_p_value=1	log10_base_likelihood=-26.4162	log10_qual_likelihood_position_model=25.5117	log10_strand_likelihood_position_model=18.8562	new_cov=23/0	polymorphism_quality=21.2	quality=21.2	quality_position_model=Inf	ref_cov=14/140	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=37/140
RA	1527	.	NC_007779	1197797	0	C	T	bias_e_value=4364540	bias_p_value=0.939351	fisher_strand_p_value=1	frequency=4.283619e-02	genotype_quality=926.4	ks_quality_p_value=0.672587	log10_base_likelihood=-22.4959	log10_qual_likelihood_position_model=5.5667	log10_strand_likelihood_position_model=0.604554	new_cov=6/4	polymorphism_quality=17.2	quality=17.2	quality_position_model=1.86828e-18	ref_cov=125/98	tot_cov=131/102
RA	1528	.	NC_007779	1197809	0	C	T	bias_e_value=3048670	bias_p_value=0.656146	fisher_strand_p_value=1	frequency=3.383446e-02	genotype_quality=952.6	ks_quality_p_value=0.295833	log10_base_likelihood=-18.2725	log10_qual_likelihood_position_model=2.70421	log10_strand_likelihood_position_model=0.56852	new_cov=4/4	polymorphism_quality=13.0	quality=13.0	quality_position_model=4.1135e-17	ref_cov=124/104	tot_cov=128/108
RA	1529	.	NC_007779	1197822	0	T	C	bias_e_value=2822580	bias_p_value=0.607486	fisher_strand_p_value=0.719679	frequency=3.343010e-02	genotype_quality=916.4	ks_quality_p_value=0.358441	log10_base_likelihood=-19.4421	log10_qual_likelihood_position_model=3.62805	log10_strand_likelihood_position_model=0.614431	new_cov=4/4	polymorphism_quality=14.2	quality=14.2	quality_position_model=2.57967e-17	ref_cov=137/94	tot_cov=141/98
RA	1530	.	NC_007779	1197824	0	A	G	bias_e_value=2783800	bias_p_value=0.599139	fisher_strand_p_value=0.72117	frequency=3.343105e-02	genotype_quality=910.9	ks_quality_p_value=0.349231	log10_base_likelihood=-19.3295	log10_qual_likelihood_position_model=4.00223	log10_strand_likelihood_position_model=0.609018	new_cov=4/4	polymorphism_quality=14.0	quality=14.0	quality_position_model=7.93839e-17	ref_cov=136/95	tot_cov=140/99
RA	1531	.	NC_007779	1213001	0	T	C	bias_e_value=3492920	bias_p_value=0.751759	fisher_strand_p_value=1	frequency=2.826118e-02	genotype_quality=827.9	ks_quality_p_value=0.384238	log10_base_likelihood=-14.25	log10_qual_likelihood_position_model=2.98993	log10_strand_likelihood_position_model=0.50854	new_cov=3/3	polymorphism_quality=8.9	quality=8.9	quality_position_model=8.55988e-13	ref_cov=112/94	tot_cov=115/97
RA	1532	.	NC_007779	1213013	0	T	C	bias_e_value=2918530	bias_p_value=0.628136	fisher_strand_p_value=1	frequency=2.773571e-02	genotype_quality=839.2	ks_quality_p_value=0.273543	log10_base_likelihood=-14.2831	log10_qual_likelihood_position_model=2.98985	log10_strand_likelihood_position_model=0.508299	new_cov=3/3	polymorphism_quality=8.9	quality=8.9	quality_position_model=7.91408e-13	ref_cov=114/96	tot_cov=117/99
RA	1533	.	NC_007779	1213026	0	C	T	bias_e_value=4608710	bias_p_value=0.991903	fisher_strand_p_value=1	frequency=2.822876e-02	genotype_quality=857.8	ks_quality_p_value=0.875473	log10_base_likelihood=-12.9938	log10_qual_likelihood_position_model=2.63179	log10_strand_likelihood_position_model=0.516063	new_cov=3/3	polymorphism_quality=7.6	quality=7.6	quality_position_model=7.18492e-12	ref_cov=115/91	tot_cov=118/94
RA	1534	.	NC_007779	1213028	0	G	A	bias_e_value=4124680	bias_p_value=0.887729	fisher_strand_p_value=1	frequency=2.796268e-02	genotype_quality=870.2	ks_quality_p_value=0.565269	log10_base_likelihood=-13.1206	log10_qual_likelihood_position_model=2.39901	log10_strand_likelihood_position_model=0.510639	new_cov=3/3	polymorphism_quality=7.7	quality=7.7	quality_position_model=3.04671e-12	ref_cov=114/94	tot_cov=117/97
RA	1535	.	NC_007779	1213058	0	T	C	bias_e_value=4138760	bias_p_value=0.890759	fisher_strand_p_value=0.615656	frequency=1.494217e-02	genotype_quality=778.5	ks_quality_p_value=0.926857	log10_base_likelihood=-5.92273	log10_qual_likelihood_position_model=2.67843	log10_strand_likelihood_position_model=0.432829	new_cov=1/2	polymorphism_quality=0.4	quality=0.4	quality_position_model=0.000139164	ref_cov=101/96	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=102/98
RA	1536	.	NC_007779	1215933	0	C	A	bias_e_value=2.25843	bias_p_value=4.86068e-07	fisher_strand_p_value=2.63646e-08	frequency=5.610991e-02	genotype_quality=635.7	ks_quality_p_value=0.999149	log10_base_likelihood=-6.81845	log10_qual_likelihood_position_model=16.1927	log10_strand_likelihood_position_model=7.57898	new_cov=0/12	polymorphism_quality=1.3	quality=1.3	quality_position_model=Inf	ref_cov=129/33	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=129/45
RA	1537	.	NC_007779	1224173	0	G	A	bias_e_value=0.00591004	bias_p_value=1.27198e-09	fisher_strand_p_value=5.152e-11	frequency=1.245389e-01	genotype_quality=559.3	ks_quality_p_value=1	log10_base_likelihood=-22.5013	log10_qual_likelihood_position_model=23.4838	log10_strand_likelihood_position_model=10.288	new_cov=0/26	polymorphism_quality=17.2	quality=17.2	quality_position_model=Inf	ref_cov=107/59	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=107/85
RA	1538	.	NC_007779	1225577	1	.	G	bias_e_value=921763	bias_p_value=0.198385	fisher_strand_p_value=0.0523098	frequency=1.818180e-02	genotype_quality=1067.0	ks_quality_p_value=0.946915	log10_base_likelihood=-16.6098	log10_qual_likelihood_position_model=2.94144	log10_strand_likelihood_position_model=1.28142	new_cov=4/0	polymorphism_quality=11.3	quality=11.3	quality_position_model=1.85086e-14	ref_cov=102/114	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=106/114
RA	1539	.	NC_007779	1260543	1	.	G	bias_e_value=902226	bias_p_value=0.19418	fisher_strand_p_value=0.504845	frequency=1.010132e-02	genotype_quality=970.2	ks_quality_p_value=0.0953564	log10_base_likelihood=-8.36298	log10_qual_likelihood_position_model=1.56419	log10_strand_likelihood_position_model=0.504416	new_cov=2/0	polymorphism_quality=2.9	quality=2.9	quality_position_model=3.16506e-08	ref_cov=109/87	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=111/87
RA	1540	.	NC_007779	1262472	0	A	C	bias_e_value=1.22048e-05	bias_p_value=2.62675e-12	fisher_strand_p_value=8.44546e-14	frequency=1.437259e-01	genotype_quality=446.7	ks_quality_p_value=1	log10_base_likelihood=-16.6944	log10_qual_likelihood_position_model=26.7901	log10_strand_likelihood_position_model=13.1951	new_cov=0/40	polymorphism_quality=11.4	quality=11.4	quality_position_model=Inf	ref_cov=89/59	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=89/100
RA	1541	.	NC_007779	1273395	1	.	G	bias_e_value=295897	bias_p_value=0.0636841	fisher_strand_p_value=0.0617861	frequency=1.388836e-02	genotype_quality=1054.2	ks_quality_p_value=0.189147	log10_base_likelihood=-12.7896	log10_qual_likelihood_position_model=3.37282	log10_strand_likelihood_position_model=1.20911	new_cov=3/0	polymorphism_quality=7.4	quality=7.4	quality_position_model=3.40804e-10	ref_cov=83/130	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=86/130
RA	1542	.	NC_007779	1273399	0	T	G	bias_e_value=1.05088e-20	bias_p_value=2.26174e-27	fisher_strand_p_value=3.39847e-29	frequency=1.923022e-01	genotype_quality=466.1	ks_quality_p_value=1	log10_base_likelihood=-34.2615	log10_qual_likelihood_position_model=41.1359	log10_strand_likelihood_position_model=28.4687	new_cov=47/0	polymorphism_quality=29.1	quality=29.1	quality_position_model=Inf	ref_cov=20/125	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=67/125
RA	1543	.	NC_007779	1282104	0	T	G	bias_e_value=4227840	bias_p_value=0.90993	fisher_strand_p_value=0.715673	frequency=2.875233e-02	genotype_quality=925.7	ks_quality_p_value=0.84787	log10_base_likelihood=-20.9799	log10_qual_likelihood_position_model=3.36939	log10_strand_likelihood_position_model=0.571845	new_cov=3/4	polymorphism_quality=15.7	quality=15.7	quality_position_model=3.53466e-19	ref_cov=122/114	tot_cov=126/118
RA	1544	.	NC_007779	1282105	0	G	C	bias_e_value=4073810	bias_p_value=0.876779	fisher_strand_p_value=0.714683	frequency=2.890301e-02	genotype_quality=968.7	ks_quality_p_value=0.764843	log10_base_likelihood=-18.5029	log10_qual_likelihood_position_model=3.0823	log10_strand_likelihood_position_model=0.574127	new_cov=3/4	polymorphism_quality=13.2	quality=13.2	quality_position_model=5.88407e-17	ref_cov=122/113	tot_cov=125/117
RA	1545	.	NC_007779	1282110	0	T	C	bias_e_value=3445270	bias_p_value=0.741502	fisher_strand_p_value=0.710133	frequency=2.949238e-02	genotype_quality=882.8	ks_quality_p_value=0.526195	log10_base_likelihood=-16.3521	log10_qual_likelihood_position_model=2.67097	log10_strand_likelihood_position_model=0.586735	new_cov=3/4	polymorphism_quality=11.0	quality=11.0	quality_position_model=3.53375e-15	ref_cov=122/108	tot_cov=125/112
RA	1546	.	NC_007779	1282115	0	T	A	bias_e_value=4114390	bias_p_value=0.885514	fisher_strand_p_value=0.716865	frequency=3.124619e-02	genotype_quality=848.5	ks_quality_p_value=0.783146	log10_base_likelihood=-18.8461	log10_qual_likelihood_position_model=2.81793	log10_strand_likelihood_position_model=0.568024	new_cov=3/4	polymorphism_quality=13.5	quality=13.5	quality_position_model=1.40428e-17	ref_cov=111/105	tot_cov=115/109
RA	1547	.	NC_007779	1282118	0	T	G	bias_e_value=4325220	bias_p_value=0.930889	fisher_strand_p_value=0.715829	frequency=2.904797e-02	genotype_quality=867.3	ks_quality_p_value=0.910904	log10_base_likelihood=-18.2568	log10_qual_likelihood_position_model=4.43839	log10_strand_likelihood_position_model=0.570332	new_cov=3/4	polymorphism_quality=13.0	quality=13.0	quality_position_model=2.46663e-15	ref_cov=112/105	tot_cov=115/109
RA	1548	.	NC_007779	1282121	0	G	A	bias_e_value=4292750	bias_p_value=0.923902	fisher_strand_p_value=0.721937	frequency=2.819538e-02	genotype_quality=931.7	ks_quality_p_value=0.881194	log10_base_likelihood=-13.2395	log10_qual_likelihood_position_model=4.41027	log10_strand_likelihood_position_model=0.559554	new_cov=3/4	polymorphism_quality=7.9	quality=7.9	quality_position_model=2.94406e-10	ref_cov=118/116	tot_cov=121/120
RA	1549	.	NC_007779	1282124	0	T	A	bias_e_value=4621370	bias_p_value=0.994627	fisher_strand_p_value=1	frequency=2.874279e-02	genotype_quality=915.2	ks_quality_p_value=0.898145	log10_base_likelihood=-15.5758	log10_qual_likelihood_position_model=4.93486	log10_strand_likelihood_position_model=0.557656	new_cov=3/4	polymorphism_quality=10.2	quality=10.2	quality_position_model=4.11261e-12	ref_cov=117/116	tot_cov=120/120
RA	1550	.	NC_007779	1282127	0	G	A	bias_e_value=4426850	bias_p_value=0.952763	fisher_strand_p_value=0.721977	frequency=3.313446e-02	genotype_quality=932.0	ks_quality_p_value=0.981777	log10_base_likelihood=-15.348	log10_qual_likelihood_position_model=6.02747	log10_strand_likelihood_position_model=0.649102	new_cov=3/5	polymorphism_quality=10.0	quality=10.0	quality_position_model=1.14119e-10	ref_cov=116/116	tot_cov=119/121
RA	1551	.	NC_007779	1282130	0	A	G	bias_e_value=4630640	bias_p_value=0.996622	fisher_strand_p_value=1	frequency=2.773190e-02	genotype_quality=870.7	ks_quality_p_value=0.918935	log10_base_likelihood=-13.3464	log10_qual_likelihood_position_model=5.98716	log10_strand_likelihood_position_model=0.555733	new_cov=3/4	polymorphism_quality=8.0	quality=8.0	quality_position_model=9.4478e-09	ref_cov=115/115	tot_cov=118/119
RA	1552	.	NC_007779	1282135	0	G	T	bias_e_value=4157030	bias_p_value=0.89469	fisher_strand_p_value=1	frequency=2.990818e-02	genotype_quality=939.2	ks_quality_p_value=0.57771	log10_base_likelihood=-13.7923	log10_qual_likelihood_position_model=6.22974	log10_strand_likelihood_position_model=0.552007	new_cov=3/4	polymorphism_quality=8.4	quality=8.4	quality_position_model=5.78265e-09	ref_cov=112/114	tot_cov=115/118
RA	1553	.	NC_007779	1282136	0	G	C	bias_e_value=2430450	bias_p_value=0.52309	fisher_strand_p_value=1	frequency=2.995968e-02	genotype_quality=932.0	ks_quality_p_value=0.200748	log10_base_likelihood=-17.208	log10_qual_likelihood_position_model=7.02503	log10_strand_likelihood_position_model=0.552007	new_cov=3/4	polymorphism_quality=11.9	quality=11.9	quality_position_model=1.19127e-11	ref_cov=112/114	tot_cov=115/118
RA	1554	.	NC_007779	1282142	0	G	C	bias_e_value=3787550	bias_p_value=0.81517	fisher_strand_p_value=1	frequency=2.966881e-02	genotype_quality=937.4	ks_quality_p_value=0.457391	log10_base_likelihood=-18.0813	log10_qual_likelihood_position_model=3.93186	log10_strand_likelihood_position_model=0.545638	new_cov=3/4	polymorphism_quality=12.8	quality=12.8	quality_position_model=1.07348e-15	ref_cov=111/117	tot_cov=114/122
RA	1555	.	NC_007779	1282145	0	A	G	bias_e_value=3693130	bias_p_value=0.794849	fisher_strand_p_value=1	frequency=3.021240e-02	genotype_quality=850.2	ks_quality_p_value=0.432309	log10_base_likelihood=-14.4158	log10_qual_likelihood_position_model=5.73346	log10_strand_likelihood_position_model=0.538365	new_cov=3/4	polymorphism_quality=9.1	quality=9.1	quality_position_model=3.96105e-10	ref_cov=106/117	tot_cov=109/121
RA	1556	.	NC_007779	1282148	0	T	C	bias_e_value=3131810	bias_p_value=0.67404	fisher_strand_p_value=1	frequency=3.015232e-02	genotype_quality=861.2	ks_quality_p_value=0.310832	log10_base_likelihood=-14.8846	log10_qual_likelihood_position_model=4.54367	log10_strand_likelihood_position_model=0.536008	new_cov=3/4	polymorphism_quality=9.5	quality=9.5	quality_position_model=7.91264e-12	ref_cov=105/118	tot_cov=108/122
RA	1557	.	NC_007779	1282154	0	A	T	bias_e_value=696955	bias_p_value=0.150001	fisher_strand_p_value=1	frequency=2.790928e-02	genotype_quality=876.4	ks_quality_p_value=0.0343061	log10_base_likelihood=-16.4698	log10_qual_likelihood_position_model=5.68733	log10_strand_likelihood_position_model=0.525872	new_cov=3/4	polymorphism_quality=11.1	quality=11.1	quality_position_model=2.73687e-12	ref_cov=101/131	tot_cov=104/135
RA	1558	.	NC_007779	1282157	0	G	A	bias_e_value=3314860	bias_p_value=0.713436	fisher_strand_p_value=1	frequency=2.969456e-02	genotype_quality=925.8	ks_quality_p_value=0.346208	log10_base_likelihood=-14.913	log10_qual_likelihood_position_model=3.57773	log10_strand_likelihood_position_model=0.52675	new_cov=3/4	polymorphism_quality=9.6	quality=9.6	quality_position_model=7.48807e-13	ref_cov=101/127	tot_cov=104/131
RA	1559	.	NC_007779	1282160	0	A	G	bias_e_value=2003360	bias_p_value=0.431171	fisher_strand_p_value=1	frequency=3.022957e-02	genotype_quality=866.5	ks_quality_p_value=0.148215	log10_base_likelihood=-15.4322	log10_qual_likelihood_position_model=4.41401	log10_strand_likelihood_position_model=0.525856	new_cov=3/4	polymorphism_quality=10.1	quality=10.1	quality_position_model=1.57313e-12	ref_cov=98/126	tot_cov=101/130
RA	1560	.	NC_007779	1282163	0	T	C	bias_e_value=2067510	bias_p_value=0.444977	fisher_strand_p_value=1	frequency=3.153038e-02	genotype_quality=820.6	ks_quality_p_value=0.15554	log10_base_likelihood=-15.7905	log10_qual_likelihood_position_model=4.34891	log10_strand_likelihood_position_model=0.525058	new_cov=3/4	polymorphism_quality=10.5	quality=10.5	quality_position_model=5.81138e-13	ref_cov=92/122	tot_cov=95/126
RA	1561	.	NC_007779	1282165	0	C	G	bias_e_value=1118450	bias_p_value=0.240718	fisher_strand_p_value=1	frequency=3.161240e-02	genotype_quality=893.5	ks_quality_p_value=0.0642876	log10_base_likelihood=-18.1866	log10_qual_likelihood_position_model=6.04129	log10_strand_likelihood_position_model=0.525058	new_cov=3/4	polymorphism_quality=12.9	quality=12.9	quality_position_model=1.1155e-13	ref_cov=92/122	tot_cov=95/126
RA	1562	.	NC_007779	1282174	0	A	T	bias_e_value=3334420	bias_p_value=0.717646	fisher_strand_p_value=1	frequency=2.878475e-02	genotype_quality=898.0	ks_quality_p_value=0.350198	log10_base_likelihood=-17.665	log10_qual_likelihood_position_model=5.00058	log10_strand_likelihood_position_model=0.527099	new_cov=3/4	polymorphism_quality=12.4	quality=12.4	quality_position_model=3.32099e-14	ref_cov=97/138	tot_cov=101/142
RA	1563	.	NC_007779	1282178	0	C	T	bias_e_value=2843610	bias_p_value=0.612013	fisher_strand_p_value=1	frequency=2.941608e-02	genotype_quality=920.6	ks_quality_p_value=0.261319	log10_base_likelihood=-14.3958	log10_qual_likelihood_position_model=4.45239	log10_strand_likelihood_position_model=0.527823	new_cov=3/4	polymorphism_quality=9.0	quality=9.0	quality_position_model=1.9774e-11	ref_cov=94/136	tot_cov=97/141
RA	1564	.	NC_007779	1288364	0	G	A	bias_e_value=3928860	bias_p_value=0.845584	fisher_strand_p_value=0.498575	frequency=1	genotype_quality=65.9	ks_quality_p_value=1	log10_base_likelihood=-5.58068	log10_qual_likelihood_position_model=2.54531	log10_strand_likelihood_position_model=0.466126	new_cov=11/14	polymorphism_changed_to_consensus=1	polymorphism_quality=0.0	quality=0.0	quality_position_model=0.000252951	ref_cov=0/2	tot_cov=11/17
RA	1565	.	NC_007779	1288370	0	A	G	bias_e_value=3886500	bias_p_value=0.836465	fisher_strand_p_value=0.485714	frequency=1	genotype_quality=23.8	ks_quality_p_value=1	log10_base_likelihood=-6.15529	log10_qual_likelihood_position_model=2.02119	log10_strand_likelihood_position_model=0.464887	new_cov=6/7	polymorphism_changed_to_consensus=1	polymorphism_quality=0.6	quality=0.6	quality_position_model=1.71361e-05	ref_cov=0/2	tot_cov=6/9
RA	1566	.	NC_007779	1288458	0	A	G	frequency=1	genotype_quality=0.1	new_cov=0/1	quality=0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1567	.	NC_007779	1288462	0	T	C	frequency=1	genotype_quality=32.2	new_cov=9/4	quality=32.2	ref_cov=0/1	tot_cov=9/5
RA	1568	.	NC_007779	1288911	0	T	G	bias_e_value=0.363098	bias_p_value=7.81473e-08	fisher_strand_p_value=3.83466e-09	frequency=5.476141e-02	genotype_quality=733.2	ks_quality_p_value=1	log10_base_likelihood=-10.5615	log10_qual_likelihood_position_model=25.8914	log10_strand_likelihood_position_model=8.41627	new_cov=25/0	polymorphism_quality=5.1	quality=5.1	quality_position_model=Inf	ref_cov=89/119	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=117/119
RA	1569	.	NC_007779	1294035	0	T	A	bias_e_value=1784.43	bias_p_value=0.000384051	fisher_strand_p_value=3.40214e-05	frequency=3.721428e-02	genotype_quality=837.9	ks_quality_p_value=1	log10_base_likelihood=-6.96008	log10_qual_likelihood_position_model=15.8675	log10_strand_likelihood_position_model=4.46825	new_cov=0/10	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=150/78	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=150/88
RA	1570	.	NC_007779	1306089	0	G	C	bias_e_value=2.06529	bias_p_value=4.445e-07	fisher_strand_p_value=2.39667e-08	frequency=7.485867e-02	genotype_quality=519.8	ks_quality_p_value=1	log10_base_likelihood=-11.9726	log10_qual_likelihood_position_model=12.7765	log10_strand_likelihood_position_model=7.62039	new_cov=12/0	polymorphism_quality=6.6	quality=6.6	quality_position_model=Inf	ref_cov=26/107	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=38/107
RA	1571	.	NC_007779	1318712	0	A	C	bias_e_value=0.000421937	bias_p_value=9.08108e-11	fisher_strand_p_value=3.31015e-12	frequency=7.524538e-02	genotype_quality=483.7	ks_quality_p_value=1	log10_base_likelihood=-7.26374	log10_qual_likelihood_position_model=30.4451	log10_strand_likelihood_position_model=11.4802	new_cov=0/28	polymorphism_quality=1.8	quality=1.8	quality_position_model=Inf	ref_cov=97/48	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=97/77
RA	1572	.	NC_007779	1318876	0	G	A	frequency=1	genotype_quality=891.0	new_cov=128/95	quality=891.0	ref_cov=0/0	tot_cov=128/95
RA	1573	.	NC_007779	1324190	0	T	C	bias_e_value=0.14876	bias_p_value=3.20167e-08	fisher_strand_p_value=1.50197e-09	frequency=6.864929e-02	genotype_quality=579.3	ks_quality_p_value=1	log10_base_likelihood=-7.45607	log10_qual_likelihood_position_model=15.9529	log10_strand_likelihood_position_model=8.82334	new_cov=0/19	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=118/52	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=118/71
RA	1574	.	NC_007779	1324681	1	.	A	bias_e_value=4601330	bias_p_value=0.990315	fisher_strand_p_value=1	frequency=1.408482e-02	genotype_quality=1023.1	ks_quality_p_value=0.864092	log10_base_likelihood=-13.2414	log10_qual_likelihood_position_model=3.00772	log10_strand_likelihood_position_model=0.413993	new_cov=2/1	polymorphism_quality=7.9	quality=7.9	quality_position_model=7.64266e-12	ref_cov=107/103	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=109/104
RA	1575	.	NC_007779	1330179	0	T	G	bias_e_value=6.48977e-06	bias_p_value=1.39675e-12	fisher_strand_p_value=4.39854e-14	frequency=7.080030e-02	genotype_quality=699.4	ks_quality_p_value=1	log10_base_likelihood=-13.9853	log10_qual_likelihood_position_model=30.166	log10_strand_likelihood_position_model=13.3567	new_cov=31/0	polymorphism_quality=8.6	quality=8.6	quality_position_model=Inf	ref_cov=66/138	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=98/138
RA	1576	.	NC_007779	1333301	0	G	A	bias_e_value=3670860	bias_p_value=0.790055	fisher_strand_p_value=0.427838	frequency=2.954292e-02	genotype_quality=752.3	ks_quality_p_value=0.997192	log10_base_likelihood=-9.52454	log10_qual_likelihood_position_model=5.43989	log10_strand_likelihood_position_model=0.670993	new_cov=2/4	polymorphism_quality=4.1	quality=4.1	quality_position_model=3.18894e-05	ref_cov=102/91	tot_cov=104/95
RA	1577	.	NC_007779	1333305	0	C	G	bias_e_value=3653860	bias_p_value=0.786397	fisher_strand_p_value=0.43126	frequency=3.062725e-02	genotype_quality=777.7	ks_quality_p_value=0.979377	log10_base_likelihood=-12.9203	log10_qual_likelihood_position_model=6.12775	log10_strand_likelihood_position_model=0.661629	new_cov=2/4	polymorphism_quality=7.5	quality=7.5	quality_position_model=4.66882e-08	ref_cov=99/90	tot_cov=101/94
RA	1578	.	NC_007779	1333310	0	A	G	bias_e_value=3698640	bias_p_value=0.796035	fisher_strand_p_value=0.433726	frequency=2.558422e-02	genotype_quality=810.3	ks_quality_p_value=1	log10_base_likelihood=-10.3755	log10_qual_likelihood_position_model=4.93275	log10_strand_likelihood_position_model=0.657642	new_cov=2/4	polymorphism_quality=4.9	quality=4.9	quality_position_model=1.16196e-06	ref_cov=112/103	tot_cov=114/107
RA	1579	.	NC_007779	1333316	0	A	G	bias_e_value=3691750	bias_p_value=0.794552	fisher_strand_p_value=0.441222	frequency=2.735901e-02	genotype_quality=821.2	ks_quality_p_value=0.978995	log10_base_likelihood=-10.4939	log10_qual_likelihood_position_model=6.46493	log10_strand_likelihood_position_model=0.640658	new_cov=2/4	polymorphism_quality=5.1	quality=5.1	quality_position_model=3.39195e-05	ref_cov=108/103	tot_cov=110/107
RA	1580	.	NC_007779	1333320	0	A	G	bias_e_value=3647060	bias_p_value=0.784933	fisher_strand_p_value=0.433726	frequency=2.685070e-02	genotype_quality=818.2	ks_quality_p_value=0.969903	log10_base_likelihood=-11.1146	log10_qual_likelihood_position_model=6.32458	log10_strand_likelihood_position_model=0.657642	new_cov=2/4	polymorphism_quality=5.7	quality=5.7	quality_position_model=5.58759e-06	ref_cov=112/103	tot_cov=114/107
RA	1581	.	NC_007779	1333323	0	G	A	bias_e_value=3727000	bias_p_value=0.802138	fisher_strand_p_value=0.441222	frequency=2.714634e-02	genotype_quality=833.1	ks_quality_p_value=0.999738	log10_base_likelihood=-9.34291	log10_qual_likelihood_position_model=5.5475	log10_strand_likelihood_position_model=0.640658	new_cov=2/4	polymorphism_quality=3.9	quality=3.9	quality_position_model=5.99708e-05	ref_cov=108/103	tot_cov=110/107
RA	1582	.	NC_007779	1333324	0	C	T	bias_e_value=3677120	bias_p_value=0.791403	fisher_strand_p_value=0.429988	frequency=2.694130e-02	genotype_quality=838.1	ks_quality_p_value=0.995892	log10_base_likelihood=-9.51701	log10_qual_likelihood_position_model=5.16287	log10_strand_likelihood_position_model=0.666932	new_cov=2/4	polymorphism_quality=4.1	quality=4.1	quality_position_model=1.64041e-05	ref_cov=112/101	tot_cov=114/105
RA	1583	.	NC_007779	1333325	0	T	G	bias_e_value=2920600	bias_p_value=0.628583	fisher_strand_p_value=0.273888	frequency=2.799225e-02	genotype_quality=841.7	ks_quality_p_value=1	log10_base_likelihood=-14.157	log10_qual_likelihood_position_model=6.39571	log10_strand_likelihood_position_model=0.811486	new_cov=2/5	polymorphism_quality=8.8	quality=8.8	quality_position_model=6.6783e-09	ref_cov=112/105	tot_cov=114/110
RA	1584	.	NC_007779	1333327	0	G	C	bias_e_value=3701170	bias_p_value=0.796579	fisher_strand_p_value=0.434377	frequency=2.570248e-02	genotype_quality=905.6	ks_quality_p_value=1	log10_base_likelihood=-11.5554	log10_qual_likelihood_position_model=5.82541	log10_strand_likelihood_position_model=0.65661	new_cov=2/4	polymorphism_quality=6.2	quality=6.2	quality_position_model=5.82302e-07	ref_cov=116/107	tot_cov=119/111
RA	1585	.	NC_007779	1333328	0	T	G	bias_e_value=2900950	bias_p_value=0.624353	fisher_strand_p_value=0.270637	frequency=2.390003e-02	genotype_quality=869.3	ks_quality_p_value=1	log10_base_likelihood=-10.6789	log10_qual_likelihood_position_model=7.81562	log10_strand_likelihood_position_model=0.822646	new_cov=2/5	polymorphism_quality=5.3	quality=5.3	quality_position_model=0.000944696	ref_cov=117/108	reject=SURROUNDING_HOMOPOLYMER	tot_cov=119/113
RA	1586	.	NC_007779	1333329	0	G	C	bias_e_value=3688080	bias_p_value=0.793761	fisher_strand_p_value=0.431113	frequency=2.375603e-02	genotype_quality=910.6	ks_quality_p_value=0.999769	log10_base_likelihood=-9.68331	log10_qual_likelihood_position_model=6.71394	log10_strand_likelihood_position_model=0.664859	new_cov=2/4	polymorphism_quality=4.2	quality=4.2	quality_position_model=0.000488054	ref_cov=118/107	tot_cov=120/111
RA	1587	.	NC_007779	1333337	0	T	G	bias_e_value=3707150	bias_p_value=0.797866	fisher_strand_p_value=0.439099	frequency=2.422237e-02	genotype_quality=943.5	ks_quality_p_value=0.992769	log10_base_likelihood=-14.0297	log10_qual_likelihood_position_model=5.62579	log10_strand_likelihood_position_model=0.646842	new_cov=2/4	polymorphism_quality=8.7	quality=8.7	quality_position_model=9.88055e-10	ref_cov=124/117	tot_cov=126/121
RA	1588	.	NC_007779	1333340	0	C	A	bias_e_value=3705920	bias_p_value=0.797601	fisher_strand_p_value=0.435693	frequency=2.390003e-02	genotype_quality=996.3	ks_quality_p_value=0.999798	log10_base_likelihood=-9.64885	log10_qual_likelihood_position_model=9.18898	log10_strand_likelihood_position_model=0.654548	new_cov=2/4	polymorphism_quality=4.2	quality=4.2	quality_position_model=Inf	ref_cov=125/116	tot_cov=127/120
RA	1589	.	NC_007779	1333343	0	T	C	bias_e_value=3723250	bias_p_value=0.80133	fisher_strand_p_value=0.440913	frequency=2.344227e-02	genotype_quality=898.6	ks_quality_p_value=0.998202	log10_base_likelihood=-8.21921	log10_qual_likelihood_position_model=6.4864	log10_strand_likelihood_position_model=0.643001	new_cov=2/4	polymorphism_quality=2.7	quality=2.7	quality_position_model=0.0110285	ref_cov=124/118	tot_cov=126/122
RA	1590	.	NC_007779	1333362	0	G	A	bias_e_value=2805620	bias_p_value=0.603836	fisher_strand_p_value=0.369931	frequency=2.014732e-02	genotype_quality=922.1	ks_quality_p_value=0.690069	log10_base_likelihood=-6.74118	log10_qual_likelihood_position_model=6.28102	log10_strand_likelihood_position_model=0.7875	new_cov=1/4	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=113/114	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=114/118
RA	1591	.	NC_007779	1333363	0	T	C	bias_e_value=667607	bias_p_value=0.143685	fisher_strand_p_value=0.369972	frequency=2.113819e-02	genotype_quality=855.4	ks_quality_p_value=0.0877049	log10_base_likelihood=-9.3748	log10_qual_likelihood_position_model=4.8588	log10_strand_likelihood_position_model=0.787659	new_cov=1/4	polymorphism_quality=3.9	quality=3.9	quality_position_model=1.4847e-05	ref_cov=114/115	reject=POLYMORPHISM_STRAND	tot_cov=115/119
RA	1592	.	NC_007779	1333364	0	T	G	bias_e_value=735814	bias_p_value=0.158365	fisher_strand_p_value=0.369972	frequency=2.135181e-02	genotype_quality=891.3	ks_quality_p_value=0.099501	log10_base_likelihood=-14.2401	log10_qual_likelihood_position_model=3.39976	log10_strand_likelihood_position_model=0.787659	new_cov=1/4	polymorphism_quality=8.9	quality=8.9	quality_position_model=4.41932e-12	ref_cov=114/115	reject=POLYMORPHISM_STRAND	tot_cov=115/119
RA	1593	.	NC_007779	1333367	0	C	T	bias_e_value=3336260	bias_p_value=0.718042	fisher_strand_p_value=0.369831	frequency=2.073956e-02	genotype_quality=918.4	ks_quality_p_value=0.947935	log10_base_likelihood=-8.04907	log10_qual_likelihood_position_model=4.89419	log10_strand_likelihood_position_model=0.793239	new_cov=1/4	polymorphism_quality=2.6	quality=2.6	quality_position_model=0.000423342	ref_cov=115/115	reject=POLYMORPHISM_STRAND	tot_cov=116/119
RA	1594	.	NC_007779	1333368	0	C	G	bias_e_value=1945180	bias_p_value=0.418649	fisher_strand_p_value=0.369831	frequency=2.076912e-02	genotype_quality=946.9	ks_quality_p_value=0.383233	log10_base_likelihood=-9.92062	log10_qual_likelihood_position_model=5.15659	log10_strand_likelihood_position_model=0.793239	new_cov=1/4	polymorphism_quality=4.5	quality=4.5	quality_position_model=8.25515e-06	ref_cov=115/115	reject=POLYMORPHISM_STRAND	tot_cov=116/119
RA	1595	.	NC_007779	1333370	0	G	C	bias_e_value=3293220	bias_p_value=0.708778	fisher_strand_p_value=0.370613	frequency=2.207470e-02	genotype_quality=916.1	ks_quality_p_value=0.922371	log10_base_likelihood=-10.3863	log10_qual_likelihood_position_model=5.63113	log10_strand_likelihood_position_model=0.769945	new_cov=1/4	polymorphism_quality=5.0	quality=5.0	quality_position_model=7.97224e-06	ref_cov=108/112	reject=POLYMORPHISM_STRAND	tot_cov=109/116
RA	1596	.	NC_007779	1333371	0	G	A	bias_e_value=2122870	bias_p_value=0.456892	fisher_strand_p_value=0.370613	frequency=2.204514e-02	genotype_quality=895.9	ks_quality_p_value=0.437152	log10_base_likelihood=-8.35035	log10_qual_likelihood_position_model=8.11823	log10_strand_likelihood_position_model=0.769945	new_cov=1/4	polymorphism_quality=2.9	quality=2.9	quality_position_model=Inf	ref_cov=108/112	reject=POLYMORPHISM_STRAND	tot_cov=109/116
RA	1597	.	NC_007779	1333373	0	G	C	bias_e_value=3293220	bias_p_value=0.708778	fisher_strand_p_value=0.370613	frequency=2.215672e-02	genotype_quality=904.9	ks_quality_p_value=0.922371	log10_base_likelihood=-11.0705	log10_qual_likelihood_position_model=5.27669	log10_strand_likelihood_position_model=0.769945	new_cov=1/4	polymorphism_quality=5.7	quality=5.7	quality_position_model=6.55606e-07	ref_cov=108/112	reject=POLYMORPHISM_STRAND	tot_cov=109/116
RA	1598	.	NC_007779	1337405	0	T	G	bias_e_value=8.67331e-07	bias_p_value=1.8667e-13	fisher_strand_p_value=5.51775e-15	frequency=6.294775e-02	genotype_quality=604.1	ks_quality_p_value=1	log10_base_likelihood=-7.79112	log10_qual_likelihood_position_model=26.7994	log10_strand_likelihood_position_model=14.2582	new_cov=29/0	polymorphism_quality=2.3	quality=2.3	quality_position_model=Inf	ref_cov=49/133	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=78/133
RA	1599	.	NC_007779	1348546	1	.	T	bias_e_value=4319750	bias_p_value=0.929711	fisher_strand_p_value=1	frequency=9.478569e-03	genotype_quality=1012.5	ks_quality_p_value=0.649309	log10_base_likelihood=-8.54731	log10_qual_likelihood_position_model=1.64304	log10_strand_likelihood_position_model=0.300149	new_cov=1/1	polymorphism_quality=3.1	quality=3.1	quality_position_model=1.5164e-08	ref_cov=99/110	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=100/111
RA	1600	.	NC_007779	1352913	1	.	T	bias_e_value=19958.5	bias_p_value=0.00429554	fisher_strand_p_value=0.000730812	frequency=3.424644e-02	genotype_quality=661.4	ks_quality_p_value=0.683286	log10_base_likelihood=-22.4652	log10_qual_likelihood_position_model=3.53935	log10_strand_likelihood_position_model=3.13619	new_cov=5/0	polymorphism_quality=17.2	quality=17.2	quality_position_model=6.50855e-18	ref_cov=31/110	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,INDEL_HOMOPOLYMER	tot_cov=36/110
RA	1601	.	NC_007779	1352924	0	A	C	bias_e_value=153.176	bias_p_value=3.29672e-05	fisher_strand_p_value=2.36224e-06	frequency=4.125214e-02	genotype_quality=441.1	ks_quality_p_value=1	log10_base_likelihood=-7.9162	log10_qual_likelihood_position_model=11.475	log10_strand_likelihood_position_model=5.6348	new_cov=7/2	polymorphism_quality=2.4	quality=2.4	quality_position_model=Inf	ref_cov=9/119	reject=FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=16/121
RA	1602	.	NC_007779	1371749	1	.	T	bias_e_value=1310350	bias_p_value=0.282018	fisher_strand_p_value=0.258749	frequency=3.083706e-02	genotype_quality=1041.2	ks_quality_p_value=0.309118	log10_base_likelihood=-31.644	log10_qual_likelihood_position_model=3.49317	log10_strand_likelihood_position_model=0.868918	new_cov=5/2	polymorphism_quality=26.5	quality=26.5	quality_position_model=1.60273e-29	ref_cov=102/118	reject=INDEL_HOMOPOLYMER	tot_cov=107/120
RA	1603	.	NC_007779	1378219	0	A	C	bias_e_value=5.61769e-08	bias_p_value=1.20906e-14	fisher_strand_p_value=3.29914e-16	frequency=1.259394e-01	genotype_quality=454.8	ks_quality_p_value=1	log10_base_likelihood=-14.1547	log10_qual_likelihood_position_model=33.7251	log10_strand_likelihood_position_model=15.4816	new_cov=0/32	polymorphism_quality=8.8	quality=8.8	quality_position_model=Inf	ref_cov=101/34	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=101/66
RA	1604	.	NC_007779	1378854	0	A	C	bias_e_value=3.15212e-10	bias_p_value=6.78411e-17	fisher_strand_p_value=1.61656e-18	frequency=1.061630e-01	genotype_quality=508.8	ks_quality_p_value=1	log10_base_likelihood=-8.59096	log10_qual_likelihood_position_model=29.6651	log10_strand_likelihood_position_model=17.7914	new_cov=0/45	polymorphism_quality=3.1	quality=3.1	quality_position_model=Inf	ref_cov=109/52	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=110/97
RA	1605	.	NC_007779	1386502	0	T	G	bias_e_value=9.68024e-05	bias_p_value=2.08341e-11	fisher_strand_p_value=7.19402e-13	frequency=7.661724e-02	genotype_quality=583.1	ks_quality_p_value=1	log10_base_likelihood=-11.5175	log10_qual_likelihood_position_model=28.8336	log10_strand_likelihood_position_model=12.143	new_cov=29/0	polymorphism_quality=6.1	quality=6.1	quality_position_model=Inf	ref_cov=59/119	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=88/119
RA	1606	.	NC_007779	1405508	0	G	T	bias_e_value=5.50411e-05	bias_p_value=1.18461e-11	fisher_strand_p_value=4.02e-13	frequency=1.379929e-01	genotype_quality=428.6	ks_quality_p_value=0.997396	log10_base_likelihood=-45.8946	log10_qual_likelihood_position_model=15.6362	log10_strand_likelihood_position_model=12.3958	new_cov=17/0	polymorphism_quality=40.8	quality=40.8	quality_position_model=5.1803e-20	ref_cov=13/93	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=30/93
RA	1607	.	NC_007779	1409137	0	G	T	bias_e_value=1.62675e-06	bias_p_value=3.50115e-13	fisher_strand_p_value=1.05512e-14	frequency=1.448607e-01	genotype_quality=671.9	ks_quality_p_value=1	log10_base_likelihood=-36.416	log10_qual_likelihood_position_model=21.9202	log10_strand_likelihood_position_model=13.9767	new_cov=0/38	polymorphism_quality=31.3	quality=31.3	quality_position_model=0.0565463	ref_cov=122/73	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=122/111
RA	1608	.	NC_007779	1412694	0	C	A	bias_e_value=13869.6	bias_p_value=0.00298506	fisher_strand_p_value=0.00033141	frequency=4.107189e-02	genotype_quality=686.3	ks_quality_p_value=0.999377	log10_base_likelihood=-6.89364	log10_qual_likelihood_position_model=10.4814	log10_strand_likelihood_position_model=3.70949	new_cov=14/0	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=108/97	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=122/97
RA	1609	.	NC_007779	1429451	0	T	C	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1610	.	NC_007779	1429452	0	T	C	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1611	.	NC_007779	1429455	0	G	A	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1612	.	NC_007779	1429463	0	C	G	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1613	.	NC_007779	1429497	0	A	G	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1614	.	NC_007779	1429517	0	G	C	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1615	.	NC_007779	1429625	0	A	C	deleted=1	frequency=1	genotype_quality=3.3	new_cov=1/0	quality=3.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1616	.	NC_007779	1429889	0	A	C	deleted=1	frequency=1	genotype_quality=0.8	new_cov=0/1	quality=0.8	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1617	.	NC_007779	1430324	0	A	T	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1618	.	NC_007779	1430325	0	G	T	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1619	.	NC_007779	1430327	0	G	C	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1620	.	NC_007779	1430328	0	G	A	deleted=1	frequency=1	genotype_quality=-0.1	new_cov=0/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1621	.	NC_007779	1430329	0	T	C	deleted=1	frequency=1	genotype_quality=0.2	new_cov=0/2	quality=0.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	1622	.	NC_007779	1430333	0	A	G	deleted=1	frequency=1	genotype_quality=0.2	new_cov=0/2	quality=0.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	1623	.	NC_007779	1430336	0	C	T	deleted=1	frequency=1	genotype_quality=0.2	new_cov=0/2	quality=0.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	1624	.	NC_007779	1430366	0	G	C	deleted=1	frequency=1	genotype_quality=0.2	new_cov=0/2	quality=0.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	1625	.	NC_007779	1430368	0	G	A	deleted=1	frequency=1	genotype_quality=0.2	new_cov=0/2	quality=0.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	1626	.	NC_007779	1437435	0	T	A	bias_e_value=4703.16	bias_p_value=0.00101223	fisher_strand_p_value=9.90863e-05	frequency=3.193378e-02	genotype_quality=669.4	ks_quality_p_value=0.99958	log10_base_likelihood=-5.64809	log10_qual_likelihood_position_model=10.2165	log10_strand_likelihood_position_model=4.00399	new_cov=0/6	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=133/33	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=133/39
RA	1627	.	NC_007779	1437441	0	G	A	bias_e_value=0.0316693	bias_p_value=6.81597e-09	fisher_strand_p_value=2.97164e-10	frequency=6.874371e-02	genotype_quality=632.7	ks_quality_p_value=1	log10_base_likelihood=-16.0524	log10_qual_likelihood_position_model=15.8473	log10_strand_likelihood_position_model=9.527	new_cov=0/12	polymorphism_quality=10.7	quality=10.7	quality_position_model=Inf	ref_cov=137/20	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=137/32
RA	1628	.	NC_007779	1437447	0	G	C	bias_e_value=1.00552e-09	bias_p_value=2.16411e-16	fisher_strand_p_value=5.30711e-18	frequency=1.409836e-01	genotype_quality=618.5	ks_quality_p_value=1	log10_base_likelihood=-30.6236	log10_qual_likelihood_position_model=26.3495	log10_strand_likelihood_position_model=17.2751	new_cov=0/31	polymorphism_quality=25.4	quality=25.4	quality_position_model=Inf	ref_cov=133/36	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=133/67
RA	1629	.	NC_007779	1442205	0	G	C	bias_e_value=208.49	bias_p_value=4.4872e-05	fisher_strand_p_value=3.29372e-06	frequency=4.567337e-02	genotype_quality=526.6	ks_quality_p_value=1	log10_base_likelihood=-6.70225	log10_qual_likelihood_position_model=9.38604	log10_strand_likelihood_position_model=5.48231	new_cov=0/7	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=111/18	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=111/25
RA	1630	.	NC_007779	1449735	1	.	G	bias_e_value=811028	bias_p_value=0.174552	fisher_strand_p_value=0.0483004	frequency=1.834869e-02	genotype_quality=1049.2	ks_quality_p_value=0.8657	log10_base_likelihood=-16.6258	log10_qual_likelihood_position_model=2.64917	log10_strand_likelihood_position_model=1.31605	new_cov=4/0	polymorphism_quality=11.3	quality=11.3	quality_position_model=9.75297e-15	ref_cov=99/115	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=103/115
RA	1631	.	NC_007779	1449739	0	A	G	bias_e_value=182760	bias_p_value=0.0393342	fisher_strand_p_value=0.00652301	frequency=2.478981e-02	genotype_quality=509.2	ks_quality_p_value=0.999534	log10_base_likelihood=-5.56608	log10_qual_likelihood_position_model=5.45198	log10_strand_likelihood_position_model=2.19846	new_cov=3/1	polymorphism_quality=0.0	quality=0.0	quality_position_model=Inf	ref_cov=14/115	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=17/116
RA	1632	.	NC_007779	1468353	0	C	T	bias_e_value=1984940	bias_p_value=0.427206	fisher_strand_p_value=0.364158	frequency=1.612091e-02	genotype_quality=787.6	ks_quality_p_value=0.401325	log10_base_likelihood=-5.84494	log10_qual_likelihood_position_model=3.28578	log10_strand_likelihood_position_model=0.615051	new_cov=3/1	polymorphism_quality=0.3	quality=0.3	quality_position_model=0.00120474	ref_cov=99/104	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=102/105
RA	1633	.	NC_007779	1483588	0	G	A	frequency=1	genotype_quality=588.9	new_cov=107/45	quality=588.9	ref_cov=0/0	tot_cov=107/45
RA	1634	.	NC_007779	1483616	0	C	G	bias_e_value=1.0464	bias_p_value=2.2521e-07	fisher_strand_p_value=1.16904e-08	frequency=5.936956e-02	genotype_quality=469.3	ks_quality_p_value=1	log10_base_likelihood=-8.04254	log10_qual_likelihood_position_model=11.4397	log10_strand_likelihood_position_model=7.93217	new_cov=0/8	polymorphism_quality=2.6	quality=2.6	quality_position_model=Inf	ref_cov=108/8	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=108/16
RA	1635	.	NC_007779	1485314	0	G	C	bias_e_value=3413610	bias_p_value=0.73469	fisher_strand_p_value=0.423209	frequency=1.038041e-01	genotype_quality=945.1	ks_quality_p_value=0.866739	log10_base_likelihood=-85.1706	log10_qual_likelihood_position_model=8.73377	log10_strand_likelihood_position_model=0.943939	new_cov=11/16	polymorphism_quality=80.2	quality=80.2	quality_position_model=5.95689e-78	ref_cov=115/118	tot_cov=126/134
RA	1636	.	NC_007779	1485317	0	G	A	bias_e_value=3318660	bias_p_value=0.714254	fisher_strand_p_value=0.543159	frequency=1.043057e-01	genotype_quality=841.7	ks_quality_p_value=0.638819	log10_base_likelihood=-69.0454	log10_qual_likelihood_position_model=9.47723	log10_strand_likelihood_position_model=0.906424	new_cov=11/16	polymorphism_quality=64.0	quality=64.0	quality_position_model=4.57701e-61	ref_cov=111/119	reject=SURROUNDING_HOMOPOLYMER	tot_cov=122/135
RA	1637	.	NC_007779	1485320	0	C	T	bias_e_value=3290790	bias_p_value=0.708255	fisher_strand_p_value=0.544928	frequency=1.032224e-01	genotype_quality=873.5	ks_quality_p_value=0.626424	log10_base_likelihood=-68.6805	log10_qual_likelihood_position_model=9.59167	log10_strand_likelihood_position_model=0.894786	new_cov=11/16	polymorphism_quality=63.7	quality=63.7	quality_position_model=1.349e-60	ref_cov=112/122	tot_cov=123/138
RA	1638	.	NC_007779	1485321	0	C	G	bias_e_value=3830090	bias_p_value=0.824326	fisher_strand_p_value=0.544928	frequency=1.034045e-01	genotype_quality=945.2	ks_quality_p_value=0.861203	log10_base_likelihood=-83.9766	log10_qual_likelihood_position_model=9.16565	log10_strand_likelihood_position_model=0.894786	new_cov=11/16	polymorphism_quality=79.0	quality=79.0	quality_position_model=2.27145e-76	ref_cov=112/122	tot_cov=123/138
RA	1639	.	NC_007779	1485322	0	A	G	bias_e_value=3703050	bias_p_value=0.796983	fisher_strand_p_value=0.543641	frequency=1.016870e-01	genotype_quality=844.6	ks_quality_p_value=0.799905	log10_base_likelihood=-71.0225	log10_qual_likelihood_position_model=11.1956	log10_strand_likelihood_position_model=0.909457	new_cov=11/16	polymorphism_quality=66.0	quality=66.0	quality_position_model=2.53467e-61	ref_cov=115/123	tot_cov=126/139
RA	1640	.	NC_007779	1485323	0	G	C	bias_e_value=3444640	bias_p_value=0.741368	fisher_strand_p_value=0.542539	frequency=1.029530e-01	genotype_quality=953.3	ks_quality_p_value=0.688489	log10_base_likelihood=-84.9834	log10_qual_likelihood_position_model=10.094	log10_strand_likelihood_position_model=0.929453	new_cov=11/16	polymorphism_quality=80.0	quality=80.0	quality_position_model=2.05315e-76	ref_cov=115/120	tot_cov=126/136
RA	1641	.	NC_007779	1485325	0	A	G	bias_e_value=2174500	bias_p_value=0.468004	fisher_strand_p_value=0.542976	frequency=1.029329e-01	genotype_quality=838.1	ks_quality_p_value=0.309744	log10_base_likelihood=-74.0587	log10_qual_likelihood_position_model=9.51899	log10_strand_likelihood_position_model=0.91519	new_cov=11/16	polymorphism_quality=69.1	quality=69.1	quality_position_model=4.78955e-66	ref_cov=114/121	tot_cov=125/137
RA	1642	.	NC_007779	1485326	0	A	C	bias_e_value=3231500	bias_p_value=0.695496	fisher_strand_p_value=0.542976	frequency=1.029062e-01	genotype_quality=854.6	ks_quality_p_value=0.60716	log10_base_likelihood=-89.2511	log10_qual_likelihood_position_model=10.427	log10_strand_likelihood_position_model=0.91519	new_cov=11/16	polymorphism_quality=84.3	quality=84.3	quality_position_model=2.25023e-80	ref_cov=114/121	tot_cov=125/137
RA	1643	.	NC_007779	1485332	0	C	A	bias_e_value=4373600	bias_p_value=0.941301	fisher_strand_p_value=0.684238	frequency=1.032710e-01	genotype_quality=955.9	ks_quality_p_value=0.990224	log10_base_likelihood=-72.6644	log10_qual_likelihood_position_model=10.0758	log10_strand_likelihood_position_model=0.870694	new_cov=11/16	polymorphism_quality=67.7	quality=67.7	quality_position_model=3.92165e-64	ref_cov=110/124	tot_cov=121/140
RA	1644	.	NC_007779	1485336	0	C	T	bias_e_value=4575360	bias_p_value=0.984726	fisher_strand_p_value=0.837849	frequency=1.094241e-01	genotype_quality=810.2	ks_quality_p_value=0.991096	log10_base_likelihood=-68.7637	log10_qual_likelihood_position_model=9.26295	log10_strand_likelihood_position_model=0.824295	new_cov=11/16	polymorphism_quality=63.7	quality=63.7	quality_position_model=4.4241e-61	ref_cov=99/121	tot_cov=111/137
RA	1645	.	NC_007779	1485338	1	.	C	bias_e_value=42386	bias_p_value=0.00912247	fisher_strand_p_value=0.130937	frequency=1.619434e-02	genotype_quality=1201.9	ks_quality_p_value=0.00899682	log10_base_likelihood=-17.4345	log10_qual_likelihood_position_model=2.94713	log10_strand_likelihood_position_model=1.03249	new_cov=0/4	polymorphism_quality=12.1	quality=12.1	quality_position_model=1.52068e-15	ref_cov=110/133	reject=POLYMORPHISM_STRAND	tot_cov=110/137
RA	1646	.	NC_007779	1485339	0	A	C	bias_e_value=4645470	bias_p_value=0.999813	fisher_strand_p_value=1	frequency=8.937502e-02	genotype_quality=864.6	ks_quality_p_value=0.980749	log10_base_likelihood=-77.2924	log10_qual_likelihood_position_model=8.79005	log10_strand_likelihood_position_model=0.767968	new_cov=11/12	polymorphism_quality=72.3	quality=72.3	quality_position_model=3.60527e-70	ref_cov=107/125	tot_cov=118/141
RA	1647	.	NC_007779	1485340	0	T	G	bias_e_value=4502400	bias_p_value=0.969022	fisher_strand_p_value=0.823795	frequency=8.416796e-02	genotype_quality=880.6	ks_quality_p_value=0.924556	log10_base_likelihood=-70.9468	log10_qual_likelihood_position_model=9.98759	log10_strand_likelihood_position_model=0.788744	new_cov=11/11	polymorphism_quality=65.9	quality=65.9	quality_position_model=1.40085e-62	ref_cov=109/130	tot_cov=120/141
RA	1648	.	NC_007779	1485341	0	G	T	bias_e_value=4569580	bias_p_value=0.983482	fisher_strand_p_value=0.82443	frequency=8.508158e-02	genotype_quality=999.3	ks_quality_p_value=0.999278	log10_base_likelihood=-54.285	log10_qual_likelihood_position_model=15.8678	log10_strand_likelihood_position_model=0.780173	new_cov=11/11	polymorphism_quality=49.2	quality=49.2	quality_position_model=6.03684e-40	ref_cov=109/127	tot_cov=120/138
RA	1649	.	NC_007779	1485342	0	C	G	bias_e_value=4571530	bias_p_value=0.983901	fisher_strand_p_value=0.826633	frequency=8.673716e-02	genotype_quality=964.1	ks_quality_p_value=0.999247	log10_base_likelihood=-63.6332	log10_qual_likelihood_position_model=9.4731	log10_strand_likelihood_position_model=0.768212	new_cov=11/11	polymorphism_quality=58.6	quality=58.6	quality_position_model=8.92743e-56	ref_cov=109/122	tot_cov=120/138
RA	1650	.	NC_007779	1485353	0	T	C	bias_e_value=1693270	bias_p_value=0.364432	fisher_strand_p_value=0.584896	frequency=1.244578e-01	genotype_quality=809.6	ks_quality_p_value=0.197175	log10_base_likelihood=-97.4931	log10_qual_likelihood_position_model=10.7203	log10_strand_likelihood_position_model=0.920053	new_cov=18/16	polymorphism_quality=92.6	quality=92.6	quality_position_model=2.44004e-88	ref_cov=113/126	tot_cov=131/142
RA	1651	.	NC_007779	1485359	0	T	C	bias_e_value=1237810	bias_p_value=0.266406	fisher_strand_p_value=0.708876	frequency=1.304083e-01	genotype_quality=720.1	ks_quality_p_value=0.104246	log10_base_likelihood=-99.4544	log10_qual_likelihood_position_model=13.1886	log10_strand_likelihood_position_model=0.895997	new_cov=17/16	polymorphism_quality=94.5	quality=94.5	quality_position_model=7.43913e-88	ref_cov=102/118	tot_cov=119/134
RA	1652	.	NC_007779	1485362	0	T	C	bias_e_value=350258	bias_p_value=0.0753838	fisher_strand_p_value=0.708876	frequency=1.300597e-01	genotype_quality=738.2	ks_quality_p_value=0.0202873	log10_base_likelihood=-97.6823	log10_qual_likelihood_position_model=9.71711	log10_strand_likelihood_position_model=0.895997	new_cov=17/16	polymorphism_quality=92.7	quality=92.7	quality_position_model=1.47198e-89	ref_cov=102/118	tot_cov=119/135
RA	1653	.	NC_007779	1485365	0	C	T	bias_e_value=774093	bias_p_value=0.166603	fisher_strand_p_value=0.453599	frequency=1.274180e-01	genotype_quality=807.0	ks_quality_p_value=0.0867134	log10_base_likelihood=-87.7541	log10_qual_likelihood_position_model=10.5903	log10_strand_likelihood_position_model=0.99906	new_cov=17/16	polymorphism_quality=82.8	quality=82.8	quality_position_model=1.26243e-78	ref_cov=97/127	tot_cov=114/143
RA	1654	.	NC_007779	1485368	0	A	G	bias_e_value=1337570	bias_p_value=0.287876	fisher_strand_p_value=0.455312	frequency=1.307869e-01	genotype_quality=746.4	ks_quality_p_value=0.180791	log10_base_likelihood=-95.185	log10_qual_likelihood_position_model=9.98438	log10_strand_likelihood_position_model=0.976712	new_cov=17/16	polymorphism_quality=90.2	quality=90.2	quality_position_model=1.04802e-86	ref_cov=96/123	tot_cov=113/139
RA	1655	.	NC_007779	1485386	0	G	C	bias_e_value=4645690	bias_p_value=0.999863	fisher_strand_p_value=1	frequency=1.191869e-01	genotype_quality=892.0	ks_quality_p_value=0.983477	log10_base_likelihood=-97.111	log10_qual_likelihood_position_model=13.2388	log10_strand_likelihood_position_model=0.825971	new_cov=15/16	polymorphism_quality=92.2	quality=92.2	quality_position_model=1.58894e-85	ref_cov=107/122	tot_cov=122/138
RA	1656	.	NC_007779	1485389	0	T	C	bias_e_value=4211120	bias_p_value=0.906332	fisher_strand_p_value=0.830555	frequency=9.749556e-02	genotype_quality=782.6	ks_quality_p_value=0.722023	log10_base_likelihood=-64.755	log10_qual_likelihood_position_model=9.85997	log10_strand_likelihood_position_model=0.794723	new_cov=12/12	polymorphism_quality=59.7	quality=59.7	quality_position_model=1.73566e-56	ref_cov=103/119	tot_cov=115/131
RA	1657	.	NC_007779	1485395	0	T	C	bias_e_value=4114030	bias_p_value=0.885436	fisher_strand_p_value=0.634189	frequency=7.943153e-02	genotype_quality=801.2	ks_quality_p_value=0.885026	log10_base_likelihood=-50.3211	log10_qual_likelihood_position_model=5.47411	log10_strand_likelihood_position_model=0.802649	new_cov=10/9	polymorphism_quality=45.2	quality=45.2	quality_position_model=2.18625e-46	ref_cov=100/120	tot_cov=110/129
RA	1658	.	NC_007779	1485398	0	T	C	bias_e_value=4271790	bias_p_value=0.91939	fisher_strand_p_value=0.633581	frequency=7.905436e-02	genotype_quality=811.2	ks_quality_p_value=0.988602	log10_base_likelihood=-48.3816	log10_qual_likelihood_position_model=8.59288	log10_strand_likelihood_position_model=0.80731	new_cov=10/9	polymorphism_quality=43.3	quality=43.3	quality_position_model=2.68458e-41	ref_cov=100/121	tot_cov=110/130
RA	1659	.	NC_007779	1485399	0	T	C	bias_e_value=4287290	bias_p_value=0.922727	fisher_strand_p_value=0.633581	frequency=7.810879e-02	genotype_quality=808.7	ks_quality_p_value=1	log10_base_likelihood=-46.7068	log10_qual_likelihood_position_model=8.54151	log10_strand_likelihood_position_model=0.80731	new_cov=10/9	polymorphism_quality=41.6	quality=41.6	quality_position_model=1.15198e-39	ref_cov=100/121	tot_cov=110/130
RA	1660	.	NC_007779	1485404	0	C	G	bias_e_value=1469740	bias_p_value=0.316323	fisher_strand_p_value=0.635927	frequency=7.722044e-02	genotype_quality=942.5	ks_quality_p_value=0.147858	log10_base_likelihood=-59.8654	log10_qual_likelihood_position_model=5.94624	log10_strand_likelihood_position_model=0.795705	new_cov=10/9	polymorphism_quality=54.8	quality=54.8	quality_position_model=1.66054e-55	ref_cov=104/123	tot_cov=114/132
RA	1661	.	NC_007779	1485407	0	C	A	bias_e_value=3013870	bias_p_value=0.648655	fisher_strand_p_value=0.817367	frequency=8.324671e-02	genotype_quality=916.6	ks_quality_p_value=0.354474	log10_base_likelihood=-51.9915	log10_qual_likelihood_position_model=8.34045	log10_strand_likelihood_position_model=0.756073	new_cov=10/10	polymorphism_quality=46.9	quality=46.9	quality_position_model=3.1243e-45	ref_cov=102/118	tot_cov=112/128
RA	1662	.	NC_007779	1485413	0	G	A	bias_e_value=4131240	bias_p_value=0.889139	fisher_strand_p_value=0.811059	frequency=7.722855e-02	genotype_quality=839.3	ks_quality_p_value=0.700012	log10_base_likelihood=-39.4523	log10_qual_likelihood_position_model=11.1337	log10_strand_likelihood_position_model=0.72919	new_cov=8/10	polymorphism_quality=34.3	quality=34.3	quality_position_model=7.85236e-30	ref_cov=103/112	tot_cov=113/122
RA	1663	.	NC_007779	1485416	0	A	G	bias_e_value=4544350	bias_p_value=0.978051	fisher_strand_p_value=0.807956	frequency=8.025789e-02	genotype_quality=750.2	ks_quality_p_value=0.987595	log10_base_likelihood=-46.0234	log10_qual_likelihood_position_model=10.5793	log10_strand_likelihood_position_model=0.741372	new_cov=8/10	polymorphism_quality=40.9	quality=40.9	quality_position_model=5.40141e-37	ref_cov=101/105	tot_cov=109/115
RA	1664	.	NC_007779	1485417	0	G	C	bias_e_value=4553320	bias_p_value=0.979981	fisher_strand_p_value=0.809083	frequency=7.820988e-02	genotype_quality=888.2	ks_quality_p_value=0.997051	log10_base_likelihood=-51.9849	log10_qual_likelihood_position_model=9.1291	log10_strand_likelihood_position_model=0.736358	new_cov=8/10	polymorphism_quality=46.9	quality=46.9	quality_position_model=1.88021e-44	ref_cov=103/109	tot_cov=111/119
RA	1665	.	NC_007779	1485417	1	.	C	bias_e_value=222945	bias_p_value=0.047983	fisher_strand_p_value=0.231821	frequency=8.695602e-03	genotype_quality=1132.9	ks_quality_p_value=0.0357257	log10_base_likelihood=-8.09709	log10_qual_likelihood_position_model=2.09831	log10_strand_likelihood_position_model=0.634848	new_cov=2/0	polymorphism_quality=2.6	quality=2.6	quality_position_model=2.90637e-07	ref_cov=109/119	reject=POLYMORPHISM_STRAND	tot_cov=111/119
RA	1666	.	NC_007779	1485419	0	G	T	bias_e_value=4642610	bias_p_value=0.999199	fisher_strand_p_value=1	frequency=8.684444e-02	genotype_quality=871.4	ks_quality_p_value=0.960233	log10_base_likelihood=-52.5484	log10_qual_likelihood_position_model=10.2651	log10_strand_likelihood_position_model=0.739998	new_cov=10/10	polymorphism_quality=47.5	quality=47.5	quality_position_model=7.13327e-44	ref_cov=101/109	tot_cov=111/119
RA	1667	.	NC_007779	1485420	0	T	A	bias_e_value=4107590	bias_p_value=0.88405	fisher_strand_p_value=0.816791	frequency=8.617306e-02	genotype_quality=819.2	ks_quality_p_value=0.684244	log10_base_likelihood=-57.96	log10_qual_likelihood_position_model=8.8641	log10_strand_likelihood_position_model=0.756929	new_cov=10/10	polymorphism_quality=52.9	quality=52.9	quality_position_model=1.05938e-50	ref_cov=98/114	tot_cov=108/124
RA	1668	.	NC_007779	1485422	0	G	T	bias_e_value=1200470	bias_p_value=0.25837	fisher_strand_p_value=1	frequency=9.108305e-02	genotype_quality=846.6	ks_quality_p_value=0.0708373	log10_base_likelihood=-50.3578	log10_qual_likelihood_position_model=13.2975	log10_strand_likelihood_position_model=0.742982	new_cov=10/11	polymorphism_quality=45.3	quality=45.3	quality_position_model=1.2827e-38	ref_cov=95/107	tot_cov=105/118
RA	1669	.	NC_007779	1485430	0	G	A	bias_e_value=3270260	bias_p_value=0.703837	fisher_strand_p_value=0.811127	frequency=8.177042e-02	genotype_quality=753.0	ks_quality_p_value=0.415802	log10_base_likelihood=-42.8309	log10_qual_likelihood_position_model=7.78114	log10_strand_likelihood_position_model=0.726121	new_cov=8/10	polymorphism_quality=37.7	quality=37.7	quality_position_model=1.30005e-36	ref_cov=95/104	tot_cov=103/114
RA	1670	.	NC_007779	1485434	0	T	C	bias_e_value=3967230	bias_p_value=0.853842	fisher_strand_p_value=1	frequency=7.697058e-02	genotype_quality=752.6	ks_quality_p_value=0.510649	log10_base_likelihood=-45.458	log10_qual_likelihood_position_model=7.81024	log10_strand_likelihood_position_model=0.719312	new_cov=8/10	polymorphism_quality=40.4	quality=40.4	quality_position_model=3.11496e-39	ref_cov=100/114	tot_cov=108/124
RA	1671	.	NC_007779	1485437	0	T	A	bias_e_value=2793160	bias_p_value=0.601153	fisher_strand_p_value=1	frequency=7.321835e-02	genotype_quality=849.1	ks_quality_p_value=0.253319	log10_base_likelihood=-48.8488	log10_qual_likelihood_position_model=6.17599	log10_strand_likelihood_position_model=0.703816	new_cov=8/9	polymorphism_quality=43.8	quality=43.8	quality_position_model=2.66335e-44	ref_cov=99/116	tot_cov=107/125
RA	1672	.	NC_007779	1485440	0	C	T	bias_e_value=782890	bias_p_value=0.168496	fisher_strand_p_value=0.79002	frequency=6.593418e-02	genotype_quality=826.8	ks_quality_p_value=0.05053	log10_base_likelihood=-36.3598	log10_qual_likelihood_position_model=6.08382	log10_strand_likelihood_position_model=0.725696	new_cov=6/9	polymorphism_quality=31.2	quality=31.2	quality_position_model=8.30623e-32	ref_cov=99/113	tot_cov=105/122
RA	1673	.	NC_007779	1485443	0	A	G	bias_e_value=2529190	bias_p_value=0.544342	fisher_strand_p_value=0.598249	frequency=6.626606e-02	genotype_quality=786.0	ks_quality_p_value=0.358145	log10_base_likelihood=-38.7972	log10_qual_likelihood_position_model=5.28752	log10_strand_likelihood_position_model=0.765542	new_cov=6/9	polymorphism_quality=33.7	quality=33.7	quality_position_model=5.05319e-35	ref_cov=103/108	tot_cov=109/117
RA	1674	.	NC_007779	1485446	0	A	G	bias_e_value=3504000	bias_p_value=0.754143	fisher_strand_p_value=0.598249	frequency=6.626749e-02	genotype_quality=776.6	ks_quality_p_value=0.646452	log10_base_likelihood=-38.6038	log10_qual_likelihood_position_model=5.63581	log10_strand_likelihood_position_model=0.765542	new_cov=6/9	polymorphism_quality=33.5	quality=33.5	quality_position_model=1.7735e-34	ref_cov=103/108	tot_cov=109/117
RA	1675	.	NC_007779	1485461	0	C	G	bias_e_value=1593590	bias_p_value=0.342977	fisher_strand_p_value=0.538978	frequency=4.734373e-02	genotype_quality=922.3	ks_quality_p_value=0.195908	log10_base_likelihood=-29.7	log10_qual_likelihood_position_model=7.56208	log10_strand_likelihood_position_model=0.779542	new_cov=4/7	polymorphism_quality=24.5	quality=24.5	quality_position_model=1.51576e-23	ref_cov=111/110	tot_cov=115/117
RA	1676	.	NC_007779	1485467	0	T	G	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=1.810551e-02	genotype_quality=918.1	ks_quality_p_value=1	log10_base_likelihood=-10.2437	log10_qual_likelihood_position_model=4.81595	log10_strand_likelihood_position_model=0.495969	new_cov=3/2	polymorphism_quality=4.8	quality=4.8	quality_position_model=8.17422e-07	ref_cov=116/114	tot_cov=119/116
RA	1677	.	NC_007779	1485792	0	A	T	bias_e_value=2197660	bias_p_value=0.472987	fisher_strand_p_value=0.254039	frequency=1.042366e-02	genotype_quality=1131.9	ks_quality_p_value=0.673093	log10_base_likelihood=-5.99246	log10_qual_likelihood_position_model=2.00104	log10_strand_likelihood_position_model=0.789737	new_cov=3/0	polymorphism_quality=0.4	quality=0.4	quality_position_model=5.34729e-05	ref_cov=154/130	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=157/131
RA	1678	.	NC_007779	1485793	0	G	C	bias_e_value=985387	bias_p_value=0.212078	fisher_strand_p_value=0.130751	frequency=1.103973e-02	genotype_quality=1216.1	ks_quality_p_value=0.414218	log10_base_likelihood=-6.68635	log10_qual_likelihood_position_model=4.66615	log10_strand_likelihood_position_model=1.03777	new_cov=4/0	polymorphism_quality=1.2	quality=1.2	quality_position_model=0.0147611	ref_cov=159/132	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=163/132
RA	1679	.	NC_007779	1485797	0	A	G	bias_e_value=80996.7	bias_p_value=0.0174324	fisher_strand_p_value=0.0353766	frequency=1.995087e-02	genotype_quality=1108.5	ks_quality_p_value=0.0704501	log10_base_likelihood=-12.3417	log10_qual_likelihood_position_model=4.62533	log10_strand_likelihood_position_model=1.55114	new_cov=6/0	polymorphism_quality=7.0	quality=7.0	quality_position_model=4.30284e-08	ref_cov=160/133	reject=POLYMORPHISM_STRAND	tot_cov=167/133
RA	1680	.	NC_007779	1485800	0	G	C	bias_e_value=357515	bias_p_value=0.0769456	fisher_strand_p_value=0.244987	frequency=2.406311e-02	genotype_quality=1157.9	ks_quality_p_value=0.0602092	log10_base_likelihood=-16.3823	log10_qual_likelihood_position_model=5.56499	log10_strand_likelihood_position_model=0.98926	new_cov=6/1	polymorphism_quality=11.1	quality=11.1	quality_position_model=7.49379e-12	ref_cov=158/122	reject=POLYMORPHISM_STRAND	tot_cov=164/123
RA	1681	.	NC_007779	1485821	0	C	T	bias_e_value=360425	bias_p_value=0.0775719	fisher_strand_p_value=0.0846383	frequency=2.079105e-02	genotype_quality=1122.7	ks_quality_p_value=0.176034	log10_base_likelihood=-10.3639	log10_qual_likelihood_position_model=7.58148	log10_strand_likelihood_position_model=1.38692	new_cov=6/0	polymorphism_quality=4.9	quality=4.9	quality_position_model=0.00491038	ref_cov=163/117	reject=POLYMORPHISM_STRAND	tot_cov=169/117
RA	1682	.	NC_007779	1485822	0	G	A	bias_e_value=119782	bias_p_value=0.0257798	fisher_strand_p_value=0.0845105	frequency=2.090931e-02	genotype_quality=1120.5	ks_quality_p_value=0.0466764	log10_base_likelihood=-10.8949	log10_qual_likelihood_position_model=5.88555	log10_strand_likelihood_position_model=1.37771	new_cov=6/0	polymorphism_quality=5.5	quality=5.5	quality_position_model=1.87722e-05	ref_cov=163/116	reject=POLYMORPHISM_STRAND	tot_cov=169/116
RA	1683	.	NC_007779	1485830	0	A	G	bias_e_value=725070	bias_p_value=0.156052	fisher_strand_p_value=0.0409362	frequency=2.155590e-02	genotype_quality=1047.7	ks_quality_p_value=0.882207	log10_base_likelihood=-11.5845	log10_qual_likelihood_position_model=2.50568	log10_strand_likelihood_position_model=1.44767	new_cov=6/0	polymorphism_quality=6.2	quality=6.2	quality_position_model=1.33069e-09	ref_cov=154/117	reject=POLYMORPHISM_STRAND	tot_cov=160/117
RA	1684	.	NC_007779	1485842	0	C	G	bias_e_value=675436	bias_p_value=0.14537	fisher_strand_p_value=0.0382018	frequency=2.269745e-02	genotype_quality=1061.1	ks_quality_p_value=0.862286	log10_base_likelihood=-14.9627	log10_qual_likelihood_position_model=2.49986	log10_strand_likelihood_position_model=1.4922	new_cov=6/0	polymorphism_quality=9.6	quality=9.6	quality_position_model=5.11843e-13	ref_cov=144/114	reject=POLYMORPHISM_STRAND	tot_cov=150/114
RA	1685	.	NC_007779	1485845	0	A	G	bias_e_value=681266	bias_p_value=0.146624	fisher_strand_p_value=0.0382732	frequency=2.182674e-02	genotype_quality=969.1	ks_quality_p_value=0.8703	log10_base_likelihood=-9.72401	log10_qual_likelihood_position_model=3.77245	log10_strand_likelihood_position_model=1.4913	new_cov=6/0	polymorphism_quality=4.3	quality=4.3	quality_position_model=2.53588e-06	ref_cov=148/117	reject=POLYMORPHISM_STRAND	tot_cov=154/117
RA	1686	.	NC_007779	1485851	0	G	T	bias_e_value=778315	bias_p_value=0.167512	fisher_strand_p_value=0.0396767	frequency=2.245426e-02	genotype_quality=1068.0	ks_quality_p_value=0.998428	log10_base_likelihood=-9.89768	log10_qual_likelihood_position_model=10.2772	log10_strand_likelihood_position_model=1.46704	new_cov=6/0	polymorphism_quality=4.5	quality=4.5	quality_position_model=Inf	ref_cov=146/113	reject=POLYMORPHISM_STRAND	tot_cov=152/113
RA	1687	.	NC_007779	1485855	0	A	G	bias_e_value=713956	bias_p_value=0.15366	fisher_strand_p_value=0.0362269	frequency=2.325249e-02	genotype_quality=964.7	ks_quality_p_value=0.977071	log10_base_likelihood=-12.5013	log10_qual_likelihood_position_model=3.25668	log10_strand_likelihood_position_model=1.52972	new_cov=6/0	polymorphism_quality=7.1	quality=7.1	quality_position_model=1.09161e-09	ref_cov=138/113	reject=POLYMORPHISM_STRAND	tot_cov=144/113
RA	1688	.	NC_007779	1485857	0	A	G	bias_e_value=711575	bias_p_value=0.153148	fisher_strand_p_value=0.0362269	frequency=2.328014e-02	genotype_quality=970.5	ks_quality_p_value=0.972839	log10_base_likelihood=-12.7868	log10_qual_likelihood_position_model=2.3609	log10_strand_likelihood_position_model=1.52972	new_cov=6/0	polymorphism_quality=7.4	quality=7.4	quality_position_model=6.71896e-11	ref_cov=138/113	reject=POLYMORPHISM_STRAND	tot_cov=144/113
RA	1689	.	NC_007779	1485863	0	T	C	bias_e_value=678375	bias_p_value=0.146002	fisher_strand_p_value=0.0331511	frequency=2.311707e-02	genotype_quality=979.4	ks_quality_p_value=0.999256	log10_base_likelihood=-11.0278	log10_qual_likelihood_position_model=3.23291	log10_strand_likelihood_position_model=1.60445	new_cov=6/0	polymorphism_quality=5.6	quality=5.6	quality_position_model=4.05249e-08	ref_cov=134/117	reject=POLYMORPHISM_STRAND	tot_cov=140/117
RA	1690	.	NC_007779	1485864	0	A	G	bias_e_value=468028	bias_p_value=0.100731	fisher_strand_p_value=0.0319412	frequency=2.299309e-02	genotype_quality=968.6	ks_quality_p_value=0.646158	log10_base_likelihood=-12.106	log10_qual_likelihood_position_model=3.53312	log10_strand_likelihood_position_model=1.64387	new_cov=6/0	polymorphism_quality=6.7	quality=6.7	quality_position_model=7.01588e-09	ref_cov=133/120	reject=POLYMORPHISM_STRAND	tot_cov=139/120
RA	1691	.	NC_007779	1485869	0	C	T	bias_e_value=624180	bias_p_value=0.134338	fisher_strand_p_value=0.0302794	frequency=2.497005e-02	genotype_quality=948.2	ks_quality_p_value=0.982697	log10_base_likelihood=-11.7348	log10_qual_likelihood_position_model=3.46672	log10_strand_likelihood_position_model=1.71436	new_cov=6/0	polymorphism_quality=6.3	quality=6.3	quality_position_model=1.70912e-08	ref_cov=119/114	reject=POLYMORPHISM_STRAND	tot_cov=125/114
RA	1692	.	NC_007779	1485870	0	C	A	bias_e_value=628908	bias_p_value=0.135356	fisher_strand_p_value=0.0302794	frequency=2.490807e-02	genotype_quality=973.4	ks_quality_p_value=0.992272	log10_base_likelihood=-10.1864	log10_qual_likelihood_position_model=3.62696	log10_strand_likelihood_position_model=1.71436	new_cov=6/0	polymorphism_quality=4.8	quality=4.8	quality_position_model=1.00626e-06	ref_cov=119/114	reject=POLYMORPHISM_STRAND	tot_cov=125/114
RA	1693	.	NC_007779	1485872	0	C	T	bias_e_value=606100	bias_p_value=0.130447	fisher_strand_p_value=0.0302794	frequency=2.499580e-02	genotype_quality=944.4	ks_quality_p_value=0.946329	log10_base_likelihood=-12.0598	log10_qual_likelihood_position_model=3.13798	log10_strand_likelihood_position_model=1.71436	new_cov=6/0	polymorphism_quality=6.7	quality=6.7	quality_position_model=3.62681e-09	ref_cov=119/114	reject=POLYMORPHISM_STRAND	tot_cov=125/114
RA	1694	.	NC_007779	1485878	0	A	C	bias_e_value=600405	bias_p_value=0.129221	fisher_strand_p_value=0.0316164	frequency=2.489185e-02	genotype_quality=933.1	ks_quality_p_value=0.895415	log10_base_likelihood=-17.2386	log10_qual_likelihood_position_model=2.81034	log10_strand_likelihood_position_model=1.65256	new_cov=6/0	polymorphism_quality=11.9	quality=11.9	quality_position_model=7.44924e-15	ref_cov=123/112	reject=POLYMORPHISM_STRAND	tot_cov=129/112
RA	1695	.	NC_007779	1486010	0	T	C	bias_e_value=4229370	bias_p_value=0.910259	fisher_strand_p_value=1	frequency=2.798176e-02	genotype_quality=805.7	ks_quality_p_value=0.607458	log10_base_likelihood=-13.5982	log10_qual_likelihood_position_model=3.22117	log10_strand_likelihood_position_model=0.508418	new_cov=3/3	polymorphism_quality=8.2	quality=8.2	quality_position_model=6.81204e-12	ref_cov=95/113	tot_cov=98/116
RA	1696	.	NC_007779	1486011	0	T	A	bias_e_value=4543520	bias_p_value=0.977871	fisher_strand_p_value=1	frequency=2.799320e-02	genotype_quality=824.5	ks_quality_p_value=0.79714	log10_base_likelihood=-15.0095	log10_qual_likelihood_position_model=3.92938	log10_strand_likelihood_position_model=0.508418	new_cov=3/3	polymorphism_quality=9.7	quality=9.7	quality_position_model=1.30563e-12	ref_cov=95/113	tot_cov=98/116
RA	1697	.	NC_007779	1486012	0	C	G	bias_e_value=4493060	bias_p_value=0.967013	fisher_strand_p_value=1	frequency=2.802086e-02	genotype_quality=878.4	ks_quality_p_value=0.754393	log10_base_likelihood=-16.6792	log10_qual_likelihood_position_model=2.41159	log10_strand_likelihood_position_model=0.506433	new_cov=3/3	polymorphism_quality=11.4	quality=11.4	quality_position_model=7.43016e-16	ref_cov=96/112	tot_cov=99/115
RA	1698	.	NC_007779	1486016	0	A	G	bias_e_value=4374580	bias_p_value=0.941512	fisher_strand_p_value=1	frequency=2.760124e-02	genotype_quality=825.0	ks_quality_p_value=0.678092	log10_base_likelihood=-13.6938	log10_qual_likelihood_position_model=3.1942	log10_strand_likelihood_position_model=0.501361	new_cov=3/3	polymorphism_quality=8.3	quality=8.3	quality_position_model=5.02266e-12	ref_cov=101/110	tot_cov=104/113
RA	1699	.	NC_007779	1486019	0	C	G	bias_e_value=3457070	bias_p_value=0.744043	fisher_strand_p_value=1	frequency=2.787971e-02	genotype_quality=874.8	ks_quality_p_value=0.376259	log10_base_likelihood=-15.7559	log10_qual_likelihood_position_model=4.02332	log10_strand_likelihood_position_model=0.502498	new_cov=3/3	polymorphism_quality=10.4	quality=10.4	quality_position_model=2.78486e-13	ref_cov=99/110	tot_cov=102/113
RA	1700	.	NC_007779	1486022	0	T	A	bias_e_value=4591380	bias_p_value=0.988174	fisher_strand_p_value=1	frequency=2.747726e-02	genotype_quality=845.5	ks_quality_p_value=0.850202	log10_base_likelihood=-14.2955	log10_qual_likelihood_position_model=5.03249	log10_strand_likelihood_position_model=0.499215	new_cov=3/3	polymorphism_quality=8.9	quality=8.9	quality_position_model=9.17895e-11	ref_cov=105/107	tot_cov=108/110
RA	1701	.	NC_007779	1486025	0	C	T	bias_e_value=2496730	bias_p_value=0.537355	fisher_strand_p_value=1	frequency=2.697372e-02	genotype_quality=871.8	ks_quality_p_value=0.209756	log10_base_likelihood=-13.3505	log10_qual_likelihood_position_model=2.53249	log10_strand_likelihood_position_model=0.499645	new_cov=3/3	polymorphism_quality=8.0	quality=8.0	quality_position_model=2.36716e-12	ref_cov=106/110	tot_cov=109/113
RA	1702	.	NC_007779	1486031	0	G	T	bias_e_value=4615970	bias_p_value=0.993466	fisher_strand_p_value=1	frequency=2.729988e-02	genotype_quality=882.0	ks_quality_p_value=0.887884	log10_base_likelihood=-13.0478	log10_qual_likelihood_position_model=3.80377	log10_strand_likelihood_position_model=0.499381	new_cov=3/3	polymorphism_quality=7.7	quality=7.7	quality_position_model=9.60284e-11	ref_cov=108/105	tot_cov=111/108
RA	1703	.	NC_007779	1486037	0	G	C	bias_e_value=4567330	bias_p_value=0.982997	fisher_strand_p_value=1	frequency=3.206921e-02	genotype_quality=890.2	ks_quality_p_value=0.821352	log10_base_likelihood=-18.2718	log10_qual_likelihood_position_model=3.88272	log10_strand_likelihood_position_model=0.55313	new_cov=3/4	polymorphism_quality=13.0	quality=13.0	quality_position_model=6.23848e-16	ref_cov=105/106	tot_cov=108/110
RA	1704	.	NC_007779	1486046	0	C	G	bias_e_value=2866340	bias_p_value=0.616903	fisher_strand_p_value=0.570197	frequency=5.502033e-02	genotype_quality=937.7	ks_quality_p_value=0.46472	log10_base_likelihood=-35.16	log10_qual_likelihood_position_model=7.60416	log10_strand_likelihood_position_model=0.788839	new_cov=8/5	polymorphism_quality=30.0	quality=30.0	quality_position_model=5.29473e-29	ref_cov=111/112	tot_cov=119/117
RA	1705	.	NC_007779	1486064	0	T	C	bias_e_value=3823720	bias_p_value=0.822954	fisher_strand_p_value=0.582775	frequency=5.544472e-02	genotype_quality=852.0	ks_quality_p_value=0.802169	log10_base_likelihood=-29.7387	log10_qual_likelihood_position_model=9.94058	log10_strand_likelihood_position_model=0.803976	new_cov=9/5	polymorphism_quality=24.5	quality=24.5	quality_position_model=3.7138e-21	ref_cov=123/110	tot_cov=132/115
RA	1706	.	NC_007779	1486070	0	C	T	bias_e_value=4182830	bias_p_value=0.900243	fisher_strand_p_value=0.776979	frequency=5.058050e-02	genotype_quality=950.2	ks_quality_p_value=0.756773	log10_base_likelihood=-27.2334	log10_qual_likelihood_position_model=8.08066	log10_strand_likelihood_position_model=0.697411	new_cov=8/5	polymorphism_quality=22.0	quality=22.0	quality_position_model=1.3024e-20	ref_cov=131/110	tot_cov=139/115
RA	1707	.	NC_007779	1486073	0	G	C	bias_e_value=1089490	bias_p_value=0.234483	fisher_strand_p_value=0.584236	frequency=5.124569e-02	genotype_quality=979.2	ks_quality_p_value=0.106174	log10_base_likelihood=-34.7634	log10_qual_likelihood_position_model=7.24191	log10_strand_likelihood_position_model=0.717721	new_cov=8/5	polymorphism_quality=29.6	quality=29.6	quality_position_model=4.86163e-29	ref_cov=127/112	tot_cov=135/117
RA	1708	.	NC_007779	1486076	0	C	T	bias_e_value=2128560	bias_p_value=0.458116	fisher_strand_p_value=0.776571	frequency=4.867649e-02	genotype_quality=960.0	ks_quality_p_value=0.209495	log10_base_likelihood=-25.5723	log10_qual_likelihood_position_model=8.44257	log10_strand_likelihood_position_model=0.711607	new_cov=8/5	polymorphism_quality=20.3	quality=20.3	quality_position_model=1.5023e-18	ref_cov=130/113	tot_cov=138/118
RA	1709	.	NC_007779	1486083	0	A	G	bias_e_value=3799910	bias_p_value=0.817831	fisher_strand_p_value=0.580734	frequency=4.692936e-02	genotype_quality=972.6	ks_quality_p_value=0.793493	log10_base_likelihood=-27.2747	log10_qual_likelihood_position_model=8.54778	log10_strand_likelihood_position_model=0.730169	new_cov=8/5	polymorphism_quality=22.1	quality=22.1	quality_position_model=3.79022e-20	ref_cov=135/122	tot_cov=143/127
RA	1710	.	NC_007779	1486085	0	T	A	bias_e_value=4156930	bias_p_value=0.894668	fisher_strand_p_value=0.577671	frequency=4.836321e-02	genotype_quality=1001.1	ks_quality_p_value=1	log10_base_likelihood=-31.534	log10_qual_likelihood_position_model=8.4705	log10_strand_likelihood_position_model=0.740298	new_cov=8/5	polymorphism_quality=26.3	quality=26.3	quality_position_model=1.60839e-24	ref_cov=130/120	tot_cov=139/125
RA	1711	.	NC_007779	1486086	0	T	C	bias_e_value=4159500	bias_p_value=0.895222	fisher_strand_p_value=0.578681	frequency=4.907131e-02	genotype_quality=948.7	ks_quality_p_value=1	log10_base_likelihood=-30.1857	log10_qual_likelihood_position_model=8.28923	log10_strand_likelihood_position_model=0.736484	new_cov=8/5	polymorphism_quality=25.0	quality=25.0	quality_position_model=2.40441e-23	ref_cov=131/120	tot_cov=139/125
RA	1712	.	NC_007779	1486091	0	G	A	bias_e_value=4088030	bias_p_value=0.879841	fisher_strand_p_value=0.584816	frequency=4.895306e-02	genotype_quality=1003.5	ks_quality_p_value=0.943422	log10_base_likelihood=-29.3827	log10_qual_likelihood_position_model=7.58722	log10_strand_likelihood_position_model=0.717828	new_cov=8/5	polymorphism_quality=24.2	quality=24.2	quality_position_model=2.9119e-23	ref_cov=134/118	reject=SURROUNDING_HOMOPOLYMER	tot_cov=142/123
RA	1713	.	NC_007779	1486096	0	C	T	bias_e_value=2582190	bias_p_value=0.555748	fisher_strand_p_value=0.221789	frequency=2.252769e-02	genotype_quality=1023.9	ks_quality_p_value=0.999815	log10_base_likelihood=-9.58568	log10_qual_likelihood_position_model=5.32572	log10_strand_likelihood_position_model=0.907102	new_cov=5/1	polymorphism_quality=4.1	quality=4.1	quality_position_model=3.6979e-05	ref_cov=134/118	reject=POLYMORPHISM_STRAND	tot_cov=139/119
RA	1714	.	NC_007779	1486097	0	C	T	bias_e_value=2087250	bias_p_value=0.449225	fisher_strand_p_value=0.22207	frequency=2.367783e-02	genotype_quality=994.0	ks_quality_p_value=0.710729	log10_base_likelihood=-11.917	log10_qual_likelihood_position_model=3.49675	log10_strand_likelihood_position_model=0.90435	new_cov=5/1	polymorphism_quality=6.5	quality=6.5	quality_position_model=1.74768e-09	ref_cov=131/115	reject=POLYMORPHISM_STRAND	tot_cov=136/117
RA	1715	.	NC_007779	1486098	0	G	T	bias_e_value=2423340	bias_p_value=0.521559	fisher_strand_p_value=0.221158	frequency=2.366161e-02	genotype_quality=1019.7	ks_quality_p_value=0.903407	log10_base_likelihood=-14.141	log10_qual_likelihood_position_model=5.33334	log10_strand_likelihood_position_model=0.911046	new_cov=5/1	polymorphism_quality=8.8	quality=8.8	quality_position_model=7.10472e-10	ref_cov=131/116	reject=POLYMORPHISM_STRAND	tot_cov=136/117
RA	1716	.	NC_007779	1486101	0	C	T	bias_e_value=2476030	bias_p_value=0.532899	fisher_strand_p_value=0.219401	frequency=2.567577e-02	genotype_quality=910.6	ks_quality_p_value=0.943093	log10_base_likelihood=-11.0461	log10_qual_likelihood_position_model=5.35725	log10_strand_likelihood_position_model=0.921396	new_cov=5/1	polymorphism_quality=5.6	quality=5.6	quality_position_model=1.21225e-06	ref_cov=119/107	reject=POLYMORPHISM_STRAND	tot_cov=124/108
RA	1717	.	NC_007779	1486104	0	G	C	bias_e_value=2537440	bias_p_value=0.546116	fisher_strand_p_value=0.217681	frequency=2.486134e-02	genotype_quality=970.9	ks_quality_p_value=0.989585	log10_base_likelihood=-12.4332	log10_qual_likelihood_position_model=5.21877	log10_strand_likelihood_position_model=0.938274	new_cov=5/1	polymorphism_quality=7.0	quality=7.0	quality_position_model=3.30516e-08	ref_cov=122/112	reject=POLYMORPHISM_STRAND	tot_cov=127/113
RA	1718	.	NC_007779	1486109	0	G	T	bias_e_value=2785120	bias_p_value=0.599423	fisher_strand_p_value=0.372911	frequency=2.078152e-02	genotype_quality=969.5	ks_quality_p_value=0.675929	log10_base_likelihood=-12.146	log10_qual_likelihood_position_model=2.39624	log10_strand_likelihood_position_model=0.746364	new_cov=4/1	polymorphism_quality=6.8	quality=6.8	quality_position_model=5.21912e-11	ref_cov=122/113	reject=POLYMORPHISM_STRAND	tot_cov=126/114
RA	1719	.	NC_007779	1486114	0	A	C	bias_e_value=2559530	bias_p_value=0.550871	fisher_strand_p_value=0.21911	frequency=2.188683e-02	genotype_quality=1043.0	ks_quality_p_value=0.99733	log10_base_likelihood=-11.9198	log10_qual_likelihood_position_model=7.77977	log10_strand_likelihood_position_model=0.930324	new_cov=5/1	polymorphism_quality=6.5	quality=6.5	quality_position_model=5.24353e-05	ref_cov=139/126	reject=POLYMORPHISM_STRAND	tot_cov=144/127
RA	1720	.	NC_007779	1486115	0	T	G	bias_e_value=3449040	bias_p_value=0.742315	fisher_strand_p_value=0.375327	frequency=1.827431e-02	genotype_quality=1051.1	ks_quality_p_value=0.997783	log10_base_likelihood=-9.84426	log10_qual_likelihood_position_model=4.50024	log10_strand_likelihood_position_model=0.730752	new_cov=4/1	polymorphism_quality=4.4	quality=4.4	quality_position_model=1.75537e-06	ref_cov=140/126	reject=POLYMORPHISM_STRAND	tot_cov=144/127
RA	1721	.	NC_007779	1486118	0	C	T	bias_e_value=3363650	bias_p_value=0.723936	fisher_strand_p_value=0.375813	frequency=1.792145e-02	genotype_quality=1090.5	ks_quality_p_value=0.947926	log10_base_likelihood=-7.9203	log10_qual_likelihood_position_model=4.87655	log10_strand_likelihood_position_model=0.727763	new_cov=4/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=0.000474294	ref_cov=143/128	reject=POLYMORPHISM_STRAND	tot_cov=147/129
RA	1722	.	NC_007779	1486120	0	C	A	bias_e_value=3451860	bias_p_value=0.742922	fisher_strand_p_value=0.375953	frequency=1.762199e-02	genotype_quality=1086.3	ks_quality_p_value=0.997766	log10_base_likelihood=-6.50552	log10_qual_likelihood_position_model=8.28331	log10_strand_likelihood_position_model=0.726097	new_cov=4/1	polymorphism_quality=1.0	quality=1.0	quality_position_model=Inf	ref_cov=140/125	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=144/126
RA	1723	.	NC_007779	1486121	0	T	G	bias_e_value=3413260	bias_p_value=0.734614	fisher_strand_p_value=0.374249	frequency=1.852798e-02	genotype_quality=1041.1	ks_quality_p_value=0.979927	log10_base_likelihood=-11.396	log10_qual_likelihood_position_model=5.28432	log10_strand_likelihood_position_model=0.739102	new_cov=4/1	polymorphism_quality=6.0	quality=6.0	quality_position_model=2.84693e-07	ref_cov=138/126	reject=POLYMORPHISM_STRAND	tot_cov=142/127
RA	1724	.	NC_007779	1486124	0	G	C	bias_e_value=3428950	bias_p_value=0.737991	fisher_strand_p_value=0.375367	frequency=1.847553e-02	genotype_quality=1096.9	ks_quality_p_value=0.986017	log10_base_likelihood=-9.62355	log10_qual_likelihood_position_model=5.69256	log10_strand_likelihood_position_model=0.730214	new_cov=4/1	polymorphism_quality=4.2	quality=4.2	quality_position_model=5.35922e-05	ref_cov=139/125	reject=POLYMORPHISM_STRAND	tot_cov=143/126
RA	1725	.	NC_007779	1486130	0	G	C	bias_e_value=3426140	bias_p_value=0.737385	fisher_strand_p_value=0.376106	frequency=1.885128e-02	genotype_quality=1072.5	ks_quality_p_value=0.982459	log10_base_likelihood=-10.055	log10_qual_likelihood_position_model=3.96744	log10_strand_likelihood_position_model=0.724359	new_cov=4/1	polymorphism_quality=4.6	quality=4.6	quality_position_model=2.91142e-07	ref_cov=137/122	reject=POLYMORPHISM_STRAND	tot_cov=141/123
RA	1726	.	NC_007779	1492812	0	A	C	bias_e_value=0.0105006	bias_p_value=2.25998e-09	fisher_strand_p_value=9.38153e-11	frequency=4.998684e-02	genotype_quality=561.9	ks_quality_p_value=1	log10_base_likelihood=-6.15584	log10_qual_likelihood_position_model=28.1415	log10_strand_likelihood_position_model=10.0277	new_cov=0/26	polymorphism_quality=0.6	quality=0.6	quality_position_model=Inf	ref_cov=113/66	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=113/92
RA	1727	.	NC_007779	1492817	0	A	C	bias_e_value=0.00357181	bias_p_value=7.68738e-10	fisher_strand_p_value=3.0489e-11	frequency=4.869509e-02	genotype_quality=615.1	ks_quality_p_value=1	log10_base_likelihood=-5.90098	log10_qual_likelihood_position_model=24.6965	log10_strand_likelihood_position_model=10.5159	new_cov=0/28	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=114/69	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=114/97
RA	1728	.	NC_007779	1493621	0	T	C	bias_e_value=105.561	bias_p_value=2.27192e-05	fisher_strand_p_value=1.5825e-06	frequency=4.325485e-02	genotype_quality=614.8	ks_quality_p_value=1	log10_base_likelihood=-7.55978	log10_qual_likelihood_position_model=12.9529	log10_strand_likelihood_position_model=5.80066	new_cov=0/10	polymorphism_quality=2.1	quality=2.1	quality_position_model=Inf	ref_cov=130/41	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=130/52
RA	1729	.	NC_007779	1496775	0	T	.	frequency=1	genotype_quality=931.6	new_cov=78/111	quality=931.6	ref_cov=0/0	tot_cov=78/112
RA	1730	.	NC_007779	1502096	0	T	.	bias_e_value=3888790	bias_p_value=0.836959	fisher_strand_p_value=0.603631	frequency=1.612091e-02	genotype_quality=736.8	ks_quality_p_value=0.805788	log10_base_likelihood=-8.6636	log10_qual_likelihood_position_model=2.39886	log10_strand_likelihood_position_model=0.449153	new_cov=1/2	polymorphism_quality=3.2	quality=3.2	quality_position_model=9.89227e-08	ref_cov=97/86	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=98/88
RA	1731	.	NC_007779	1507752	0	A	C	bias_e_value=0.000915626	bias_p_value=1.97064e-10	fisher_strand_p_value=7.40022e-12	frequency=5.329752e-02	genotype_quality=500.9	ks_quality_p_value=1	log10_base_likelihood=-5.94359	log10_qual_likelihood_position_model=19.8177	log10_strand_likelihood_position_model=11.1308	new_cov=0/22	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=108/38	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=108/60
RA	1732	.	NC_007779	1512930	0	T	C	bias_e_value=0.000178811	bias_p_value=3.84844e-11	fisher_strand_p_value=1.3587e-12	frequency=1.199474e-01	genotype_quality=550.2	ks_quality_p_value=1	log10_base_likelihood=-10.8941	log10_qual_likelihood_position_model=22.211	log10_strand_likelihood_position_model=11.8669	new_cov=0/31	polymorphism_quality=5.5	quality=5.5	quality_position_model=Inf	ref_cov=105/59	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=105/90
RA	1733	.	NC_007779	1512934	0	C	G	bias_e_value=14961.2	bias_p_value=0.00322001	fisher_strand_p_value=0.000398024	frequency=4.561043e-02	genotype_quality=681.9	ks_quality_p_value=0.906186	log10_base_likelihood=-8.4307	log10_qual_likelihood_position_model=14.4028	log10_strand_likelihood_position_model=3.52564	new_cov=0/12	polymorphism_quality=3.0	quality=3.0	quality_position_model=Inf	ref_cov=100/97	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=100/109
RA	1734	.	NC_007779	1515709	0	A	G	bias_e_value=1.20473e-15	bias_p_value=2.59286e-22	fisher_strand_p_value=4.73961e-24	frequency=1.873980e-01	genotype_quality=585.3	ks_quality_p_value=1	log10_base_likelihood=-49.9567	log10_qual_likelihood_position_model=42.6005	log10_strand_likelihood_position_model=23.3243	new_cov=46/0	polymorphism_quality=44.9	quality=44.9	quality_position_model=Inf	ref_cov=42/141	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=88/141
RA	1735	.	NC_007779	1515714	0	A	T	bias_e_value=0.0314649	bias_p_value=6.77198e-09	fisher_strand_p_value=2.95159e-10	frequency=7.972097e-02	genotype_quality=743.6	ks_quality_p_value=1	log10_base_likelihood=-18.2476	log10_qual_likelihood_position_model=23.3551	log10_strand_likelihood_position_model=9.52994	new_cov=19/0	polymorphism_quality=12.9	quality=12.9	quality_position_model=Inf	ref_cov=57/145	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=76/145
RA	1736	.	NC_007779	1527466	0	T	A	bias_e_value=0.708723	bias_p_value=1.52534e-07	fisher_strand_p_value=7.75258e-09	frequency=9.734869e-02	genotype_quality=649.7	ks_quality_p_value=1	log10_base_likelihood=-22.3213	log10_qual_likelihood_position_model=24.3209	log10_strand_likelihood_position_model=8.11055	new_cov=0/20	polymorphism_quality=17.1	quality=17.1	quality_position_model=Inf	ref_cov=113/63	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=113/83
RA	1737	.	NC_007779	1527474	0	G	A	bias_e_value=2.07271e-10	bias_p_value=4.46096e-17	fisher_strand_p_value=1.05222e-18	frequency=2.053728e-01	genotype_quality=537.2	ks_quality_p_value=1	log10_base_likelihood=-59.0939	log10_qual_likelihood_position_model=36.4245	log10_strand_likelihood_position_model=17.9779	new_cov=0/47	polymorphism_quality=54.0	quality=54.0	quality_position_model=1.45472e-06	ref_cov=115/59	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=115/107
RA	1738	.	NC_007779	1527479	0	C	A	bias_e_value=0.125438	bias_p_value=2.69971e-08	fisher_strand_p_value=1.56807e-09	frequency=9.956074e-02	genotype_quality=700.9	ks_quality_p_value=0.800955	log10_base_likelihood=-18.829	log10_qual_likelihood_position_model=29.8223	log10_strand_likelihood_position_model=8.80464	new_cov=0/25	polymorphism_quality=13.5	quality=13.5	quality_position_model=Inf	ref_cov=117/81	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=117/106
RA	1739	.	NC_007779	1537499	0	A	G	bias_e_value=4.45689e-14	bias_p_value=9.59228e-21	fisher_strand_p_value=1.87989e-22	frequency=2.234597e-01	genotype_quality=479.7	ks_quality_p_value=1	log10_base_likelihood=-38.9768	log10_qual_likelihood_position_model=41.0118	log10_strand_likelihood_position_model=21.7259	new_cov=53/0	polymorphism_quality=33.8	quality=33.8	quality_position_model=Inf	ref_cov=46/111	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=99/111
RA	1740	.	NC_007779	1539877	0	T	C	bias_e_value=783765	bias_p_value=0.168685	fisher_strand_p_value=0.0429547	frequency=3.253078e-02	genotype_quality=676.6	ks_quality_p_value=0.930705	log10_base_likelihood=-13.1642	log10_qual_likelihood_position_model=3.2315	log10_strand_likelihood_position_model=1.41397	new_cov=0/6	polymorphism_quality=7.8	quality=7.8	quality_position_model=1.63586e-10	ref_cov=76/102	reject=POLYMORPHISM_STRAND	tot_cov=76/108
RA	1741	.	NC_007779	1539878	0	T	C	bias_e_value=777434	bias_p_value=0.167322	fisher_strand_p_value=0.0429547	frequency=3.254509e-02	genotype_quality=681.9	ks_quality_p_value=0.920869	log10_base_likelihood=-13.6452	log10_qual_likelihood_position_model=4.47487	log10_strand_likelihood_position_model=1.41397	new_cov=0/6	polymorphism_quality=8.3	quality=8.3	quality_position_model=9.89703e-10	ref_cov=76/102	reject=POLYMORPHISM_STRAND	tot_cov=76/108
RA	1742	.	NC_007779	1539881	0	T	C	bias_e_value=1340690	bias_p_value=0.288547	fisher_strand_p_value=0.0828613	frequency=3.269291e-02	genotype_quality=691.8	ks_quality_p_value=0.996671	log10_base_likelihood=-13.0766	log10_qual_likelihood_position_model=4.4885	log10_strand_likelihood_position_model=1.39957	new_cov=0/6	polymorphism_quality=7.7	quality=7.7	quality_position_model=3.79317e-09	ref_cov=75/102	reject=POLYMORPHISM_STRAND	tot_cov=75/108
RA	1743	.	NC_007779	1539887	0	C	G	bias_e_value=611212	bias_p_value=0.131547	fisher_strand_p_value=0.0296447	frequency=6.024313e-02	genotype_quality=782.1	ks_quality_p_value=0.97705	log10_base_likelihood=-33.2871	log10_qual_likelihood_position_model=7.89223	log10_strand_likelihood_position_model=1.83296	new_cov=1/11	polymorphism_quality=28.1	quality=28.1	quality_position_model=9.03995e-26	ref_cov=79/108	reject=POLYMORPHISM_STRAND	tot_cov=80/119
RA	1744	.	NC_007779	1539890	0	A	G	bias_e_value=417698	bias_p_value=0.0898985	fisher_strand_p_value=0.0304653	frequency=5.902910e-02	genotype_quality=686.4	ks_quality_p_value=0.587452	log10_base_likelihood=-28.0427	log10_qual_likelihood_position_model=7.06854	log10_strand_likelihood_position_model=1.75375	new_cov=1/11	polymorphism_quality=22.8	quality=22.8	quality_position_model=2.19299e-21	ref_cov=78/112	reject=POLYMORPHISM_STRAND	tot_cov=79/124
RA	1745	.	NC_007779	1539897	0	C	G	bias_e_value=609740	bias_p_value=0.13123	fisher_strand_p_value=0.0297551	frequency=5.878830e-02	genotype_quality=803.4	ks_quality_p_value=0.970422	log10_base_likelihood=-32.7924	log10_qual_likelihood_position_model=6.15657	log10_strand_likelihood_position_model=1.86682	new_cov=1/11	polymorphism_quality=27.6	quality=27.6	quality_position_model=5.47528e-27	ref_cov=82/110	reject=POLYMORPHISM_STRAND	tot_cov=83/121
RA	1746	.	NC_007779	1539898	0	T	A	bias_e_value=594213	bias_p_value=0.127889	fisher_strand_p_value=0.0297824	frequency=5.905151e-02	genotype_quality=760.3	ks_quality_p_value=0.938024	log10_base_likelihood=-33.68	log10_qual_likelihood_position_model=6.33315	log10_strand_likelihood_position_model=1.88188	new_cov=1/11	polymorphism_quality=28.5	quality=28.5	quality_position_model=1.08777e-27	ref_cov=82/109	reject=POLYMORPHISM_STRAND	tot_cov=83/120
RA	1747	.	NC_007779	1539899	0	T	G	bias_e_value=623417	bias_p_value=0.134174	fisher_strand_p_value=0.0297824	frequency=5.909920e-02	genotype_quality=725.4	ks_quality_p_value=0.997527	log10_base_likelihood=-38.467	log10_qual_likelihood_position_model=6.13052	log10_strand_likelihood_position_model=1.88188	new_cov=1/11	polymorphism_quality=33.3	quality=33.3	quality_position_model=1.02009e-32	ref_cov=82/109	reject=POLYMORPHISM_STRAND	tot_cov=83/120
RA	1748	.	NC_007779	1539901	0	T	C	bias_e_value=375746	bias_p_value=0.0808693	fisher_strand_p_value=0.015773	frequency=5.797577e-02	genotype_quality=718.5	ks_quality_p_value=0.99461	log10_base_likelihood=-28.3304	log10_qual_likelihood_position_model=8.0871	log10_strand_likelihood_position_model=1.94505	new_cov=1/11	polymorphism_quality=23.1	quality=23.1	quality_position_model=1.87776e-20	ref_cov=85/109	reject=POLYMORPHISM_STRAND	tot_cov=86/120
RA	1749	.	NC_007779	1539907	0	A	T	bias_e_value=622620	bias_p_value=0.134002	fisher_strand_p_value=0.0297472	frequency=5.932617e-02	genotype_quality=740.1	ks_quality_p_value=0.997069	log10_base_likelihood=-32.5287	log10_qual_likelihood_position_model=7.29501	log10_strand_likelihood_position_model=1.82462	new_cov=1/11	polymorphism_quality=27.3	quality=27.3	quality_position_model=1.28944e-25	ref_cov=80/110	reject=POLYMORPHISM_STRAND	tot_cov=81/121
RA	1750	.	NC_007779	1539908	0	A	G	bias_e_value=567047	bias_p_value=0.122042	fisher_strand_p_value=0.0297472	frequency=5.921125e-02	genotype_quality=682.0	ks_quality_p_value=0.884649	log10_base_likelihood=-26.9639	log10_qual_likelihood_position_model=8.95335	log10_strand_likelihood_position_model=1.82462	new_cov=1/11	polymorphism_quality=21.7	quality=21.7	quality_position_model=2.58201e-18	ref_cov=80/110	reject=POLYMORPHISM_STRAND	tot_cov=81/121
RA	1751	.	NC_007779	1539914	0	G	A	bias_e_value=340419	bias_p_value=0.0732662	fisher_strand_p_value=0.0139244	frequency=6.322432e-02	genotype_quality=683.9	ks_quality_p_value=0.997103	log10_base_likelihood=-22.4092	log10_qual_likelihood_position_model=13.1843	log10_strand_likelihood_position_model=2.05425	new_cov=1/11	polymorphism_quality=17.1	quality=17.1	quality_position_model=3.95688e-09	ref_cov=80/96	reject=POLYMORPHISM_STRAND	tot_cov=81/107
RA	1752	.	NC_007779	1539917	0	A	G	bias_e_value=338026	bias_p_value=0.0727511	fisher_strand_p_value=0.0139244	frequency=6.360245e-02	genotype_quality=645.7	ks_quality_p_value=0.988462	log10_base_likelihood=-28.491	log10_qual_likelihood_position_model=6.06505	log10_strand_likelihood_position_model=2.05425	new_cov=1/11	polymorphism_quality=23.3	quality=23.3	quality_position_model=1.50446e-22	ref_cov=80/96	reject=POLYMORPHISM_STRAND	tot_cov=81/107
RA	1753	.	NC_007779	1539923	0	T	G	bias_e_value=241115	bias_p_value=0.0518937	fisher_strand_p_value=0.0136109	frequency=5.829382e-02	genotype_quality=747.5	ks_quality_p_value=0.669026	log10_base_likelihood=-39.344	log10_qual_likelihood_position_model=5.86758	log10_strand_likelihood_position_model=2.1157	new_cov=1/11	polymorphism_quality=34.2	quality=34.2	quality_position_model=1.24805e-33	ref_cov=90/105	reject=POLYMORPHISM_STRAND	tot_cov=92/116
RA	1754	.	NC_007779	1539924	0	T	C	bias_e_value=333015	bias_p_value=0.0716726	fisher_strand_p_value=0.0135126	frequency=5.752277e-02	genotype_quality=746.3	ks_quality_p_value=1	log10_base_likelihood=-27.8524	log10_qual_likelihood_position_model=8.45916	log10_strand_likelihood_position_model=2.13676	new_cov=1/11	polymorphism_quality=22.6	quality=22.6	quality_position_model=2.12737e-19	ref_cov=91/105	reject=POLYMORPHISM_STRAND	tot_cov=92/116
RA	1755	.	NC_007779	1539925	0	T	G	bias_e_value=309631	bias_p_value=0.0666399	fisher_strand_p_value=0.0135126	frequency=5.766678e-02	genotype_quality=755.9	ks_quality_p_value=0.914345	log10_base_likelihood=-37.5661	log10_qual_likelihood_position_model=6.76053	log10_strand_likelihood_position_model=2.13676	new_cov=1/11	polymorphism_quality=32.4	quality=32.4	quality_position_model=6.4174e-31	ref_cov=91/105	reject=POLYMORPHISM_STRAND	tot_cov=92/116
RA	1756	.	NC_007779	1539926	0	A	G	bias_e_value=115118	bias_p_value=0.024776	fisher_strand_p_value=0.0135082	frequency=5.521107e-02	genotype_quality=764.0	ks_quality_p_value=0.278651	log10_base_likelihood=-28.9437	log10_qual_likelihood_position_model=6.34327	log10_strand_likelihood_position_model=2.17121	new_cov=1/11	polymorphism_quality=23.7	quality=23.7	quality_position_model=1.316e-22	ref_cov=96/109	reject=POLYMORPHISM_STRAND	tot_cov=97/120
RA	1757	.	NC_007779	1539932	0	A	G	bias_e_value=834988	bias_p_value=0.179709	fisher_strand_p_value=0.116498	frequency=7.585335e-02	genotype_quality=654.6	ks_quality_p_value=0.372949	log10_base_likelihood=-37.4113	log10_qual_likelihood_position_model=8.70203	log10_strand_likelihood_position_model=1.22042	new_cov=4/11	polymorphism_quality=32.3	quality=32.3	quality_position_model=9.91515e-30	ref_cov=88/94	tot_cov=92/105
RA	1758	.	NC_007779	1539935	0	A	G	bias_e_value=1056710	bias_p_value=0.227429	fisher_strand_p_value=0.116498	frequency=7.481575e-02	genotype_quality=668.8	ks_quality_p_value=0.510837	log10_base_likelihood=-36.376	log10_qual_likelihood_position_model=9.56698	log10_strand_likelihood_position_model=1.22042	new_cov=4/11	polymorphism_quality=31.2	quality=31.2	quality_position_model=8.16318e-28	ref_cov=88/94	tot_cov=92/105
RA	1759	.	NC_007779	1539937	0	T	C	bias_e_value=60368.1	bias_p_value=0.0129926	fisher_strand_p_value=0.116498	frequency=7.599401e-02	genotype_quality=660.1	ks_quality_p_value=0.0152022	log10_base_likelihood=-40.513	log10_qual_likelihood_position_model=7.5245	log10_strand_likelihood_position_model=1.22042	new_cov=4/11	polymorphism_quality=35.4	quality=35.4	quality_position_model=4.85403e-34	ref_cov=88/94	tot_cov=92/105
RA	1760	.	NC_007779	1539957	0	T	G	bias_e_value=2167320	bias_p_value=0.466459	fisher_strand_p_value=0.474377	frequency=9.086275e-02	genotype_quality=688.0	ks_quality_p_value=0.352711	log10_base_likelihood=-63.4639	log10_qual_likelihood_position_model=8.59726	log10_strand_likelihood_position_model=0.861257	new_cov=7/12	polymorphism_quality=58.4	quality=58.4	quality_position_model=2.1616e-56	ref_cov=89/101	tot_cov=96/113
RA	1761	.	NC_007779	1539958	0	C	T	bias_e_value=2216200	bias_p_value=0.476978	fisher_strand_p_value=0.477517	frequency=9.250832e-02	genotype_quality=707.6	ks_quality_p_value=0.362835	log10_base_likelihood=-46.935	log10_qual_likelihood_position_model=9.41844	log10_strand_likelihood_position_model=0.842912	new_cov=7/12	polymorphism_quality=41.8	quality=41.8	quality_position_model=5.62002e-39	ref_cov=86/100	tot_cov=93/112
RA	1762	.	NC_007779	1539968	0	G	C	bias_e_value=3518340	bias_p_value=0.75723	fisher_strand_p_value=0.798544	frequency=6.867170e-02	genotype_quality=907.5	ks_quality_p_value=0.488393	log10_base_likelihood=-44.4716	log10_qual_likelihood_position_model=8.72036	log10_strand_likelihood_position_model=0.718943	new_cov=7/9	polymorphism_quality=39.4	quality=39.4	quality_position_model=2.51718e-37	ref_cov=105/111	tot_cov=112/120
RA	1763	.	NC_007779	1539971	0	A	C	bias_e_value=3191750	bias_p_value=0.68694	fisher_strand_p_value=1	frequency=6.437540e-02	genotype_quality=831.6	ks_quality_p_value=0.322043	log10_base_likelihood=-48.6068	log10_qual_likelihood_position_model=7.64749	log10_strand_likelihood_position_model=0.682706	new_cov=7/8	polymorphism_quality=43.5	quality=43.5	quality_position_model=1.33862e-42	ref_cov=106/112	tot_cov=113/120
RA	1764	.	NC_007779	1539977	0	G	C	bias_e_value=2487330	bias_p_value=0.535331	fisher_strand_p_value=0.498816	frequency=4.024696e-02	genotype_quality=855.6	ks_quality_p_value=0.417915	log10_base_likelihood=-21.9025	log10_qual_likelihood_position_model=5.8199	log10_strand_likelihood_position_model=0.766679	new_cov=6/3	polymorphism_quality=16.6	quality=16.6	quality_position_model=1.96634e-17	ref_cov=103/103	reject=SURROUNDING_HOMOPOLYMER	tot_cov=109/106
RA	1765	.	NC_007779	1539978	0	C	G	bias_e_value=2314020	bias_p_value=0.498032	fisher_strand_p_value=0.498816	frequency=4.182339e-02	genotype_quality=859.2	ks_quality_p_value=0.371905	log10_base_likelihood=-24.1519	log10_qual_likelihood_position_model=6.09443	log10_strand_likelihood_position_model=0.766679	new_cov=6/3	polymorphism_quality=18.9	quality=18.9	quality_position_model=1.96387e-19	ref_cov=103/103	tot_cov=109/106
RA	1766	.	NC_007779	1539979	0	T	A	bias_e_value=1729200	bias_p_value=0.372164	fisher_strand_p_value=0.332812	frequency=3.919315e-02	genotype_quality=879.2	ks_quality_p_value=0.357357	log10_base_likelihood=-22.8328	log10_qual_likelihood_position_model=7.99074	log10_strand_likelihood_position_model=0.791081	new_cov=6/3	polymorphism_quality=17.6	quality=17.6	quality_position_model=3.77396e-16	ref_cov=108/112	tot_cov=114/115
RA	1767	.	NC_007779	1539988	0	T	A	bias_e_value=3456440	bias_p_value=0.743906	fisher_strand_p_value=0.500163	frequency=3.825569e-02	genotype_quality=872.9	ks_quality_p_value=0.751991	log10_base_likelihood=-23.5643	log10_qual_likelihood_position_model=5.0954	log10_strand_likelihood_position_model=0.757351	new_cov=6/3	polymorphism_quality=18.3	quality=18.3	quality_position_model=7.36636e-20	ref_cov=114/112	tot_cov=120/115
RA	1768	.	NC_007779	1539989	0	C	A	bias_e_value=3938480	bias_p_value=0.847654	fisher_strand_p_value=0.502242	frequency=3.786850e-02	genotype_quality=926.4	ks_quality_p_value=0.998645	log10_base_likelihood=-17.7401	log10_qual_likelihood_position_model=5.3984	log10_strand_likelihood_position_model=0.736424	new_cov=6/3	polymorphism_quality=12.4	quality=12.4	quality_position_model=1.15538e-13	ref_cov=116/110	tot_cov=122/113
RA	1769	.	NC_007779	1539991	0	C	A	bias_e_value=2991130	bias_p_value=0.643761	fisher_strand_p_value=0.285806	frequency=3.196812e-02	genotype_quality=946.8	ks_quality_p_value=1	log10_base_likelihood=-13.0132	log10_qual_likelihood_position_model=6.54049	log10_strand_likelihood_position_model=0.882316	new_cov=6/2	polymorphism_quality=7.6	quality=7.6	quality_position_model=1.69243e-07	ref_cov=118/110	tot_cov=124/113
RA	1770	.	NC_007779	1539995	0	G	A	bias_e_value=3940980	bias_p_value=0.848192	fisher_strand_p_value=0.502984	frequency=3.684902e-02	genotype_quality=941.2	ks_quality_p_value=0.998724	log10_base_likelihood=-16.8805	log10_qual_likelihood_position_model=7.11699	log10_strand_likelihood_position_model=0.73287	new_cov=6/3	polymorphism_quality=11.6	quality=11.6	quality_position_model=4.89464e-11	ref_cov=120/113	tot_cov=126/116
RA	1771	.	NC_007779	1539999	0	C	G	bias_e_value=3153650	bias_p_value=0.67874	fisher_strand_p_value=0.327493	frequency=3.747272e-02	genotype_quality=967.1	ks_quality_p_value=0.961476	log10_base_likelihood=-23.991	log10_qual_likelihood_position_model=4.59468	log10_strand_likelihood_position_model=0.808161	new_cov=6/3	polymorphism_quality=18.7	quality=18.7	quality_position_model=9.55846e-21	ref_cov=112/119	tot_cov=118/122
RA	1772	.	NC_007779	1540001	0	G	C	bias_e_value=3235560	bias_p_value=0.696369	fisher_strand_p_value=0.331411	frequency=3.705120e-02	genotype_quality=985.7	ks_quality_p_value=0.997131	log10_base_likelihood=-20.7261	log10_qual_likelihood_position_model=6.92164	log10_strand_likelihood_position_model=0.796405	new_cov=6/3	polymorphism_quality=15.4	quality=15.4	quality_position_model=4.32485e-15	ref_cov=114/119	tot_cov=120/122
RA	1773	.	NC_007779	1540004	0	A	G	bias_e_value=1679980	bias_p_value=0.361572	fisher_strand_p_value=0.327757	frequency=3.684044e-02	genotype_quality=897.1	ks_quality_p_value=0.347839	log10_base_likelihood=-21.7302	log10_qual_likelihood_position_model=4.08074	log10_strand_likelihood_position_model=0.807757	new_cov=6/3	polymorphism_quality=16.5	quality=16.5	quality_position_model=5.59474e-19	ref_cov=114/121	tot_cov=120/124
RA	1774	.	NC_007779	1540007	0	G	C	bias_e_value=3164190	bias_p_value=0.681008	fisher_strand_p_value=0.316943	frequency=3.678989e-02	genotype_quality=989.2	ks_quality_p_value=0.999689	log10_base_likelihood=-22.8111	log10_qual_likelihood_position_model=7.15522	log10_strand_likelihood_position_model=0.849723	new_cov=6/3	polymorphism_quality=17.6	quality=17.6	quality_position_model=6.46504e-17	ref_cov=111/125	tot_cov=118/128
RA	1775	.	NC_007779	1540009	0	G	A	bias_e_value=3108990	bias_p_value=0.669128	fisher_strand_p_value=0.314484	frequency=3.655434e-02	genotype_quality=960.5	ks_quality_p_value=0.975099	log10_base_likelihood=-17.1231	log10_qual_likelihood_position_model=6.88629	log10_strand_likelihood_position_model=0.862366	new_cov=6/3	polymorphism_quality=11.8	quality=11.8	quality_position_model=2.17847e-11	ref_cov=110/126	tot_cov=116/129
RA	1776	.	NC_007779	1540016	0	T	C	bias_e_value=2980070	bias_p_value=0.641381	fisher_strand_p_value=0.307029	frequency=3.858566e-02	genotype_quality=839.4	ks_quality_p_value=0.924704	log10_base_likelihood=-19.9469	log10_qual_likelihood_position_model=4.98122	log10_strand_likelihood_position_model=0.916894	new_cov=6/3	polymorphism_quality=14.7	quality=14.7	quality_position_model=3.79335e-16	ref_cov=100/123	tot_cov=106/127
RA	1777	.	NC_007779	1540019	0	G	A	bias_e_value=2142820	bias_p_value=0.461185	fisher_strand_p_value=0.191133	frequency=3.701973e-02	genotype_quality=905.2	ks_quality_p_value=0.860046	log10_base_likelihood=-17.7069	log10_qual_likelihood_position_model=5.41057	log10_strand_likelihood_position_model=0.960855	new_cov=6/3	polymorphism_quality=12.4	quality=12.4	quality_position_model=2.17495e-13	ref_cov=98/127	tot_cov=105/130
RA	1778	.	NC_007779	1540022	0	C	G	bias_e_value=3670660	bias_p_value=0.790013	fisher_strand_p_value=0.65871	frequency=2.191067e-02	genotype_quality=927.2	ks_quality_p_value=0.64761	log10_base_likelihood=-13.078	log10_qual_likelihood_position_model=2.07693	log10_strand_likelihood_position_model=0.560298	new_cov=3/2	polymorphism_quality=7.7	quality=7.7	quality_position_model=1.77566e-12	ref_cov=99/124	tot_cov=102/126
RA	1779	.	NC_007779	1540024	0	G	T	bias_e_value=4288230	bias_p_value=0.922927	fisher_strand_p_value=0.659865	frequency=2.223778e-02	genotype_quality=923.8	ks_quality_p_value=0.960833	log10_base_likelihood=-11.0262	log10_qual_likelihood_position_model=3.91017	log10_strand_likelihood_position_model=0.555499	new_cov=3/2	polymorphism_quality=5.6	quality=5.6	quality_position_model=1.68172e-08	ref_cov=98/121	tot_cov=101/123
RA	1780	.	NC_007779	1540028	0	C	A	bias_e_value=4238710	bias_p_value=0.912269	fisher_strand_p_value=0.660958	frequency=2.283859e-02	genotype_quality=885.3	ks_quality_p_value=0.925201	log10_base_likelihood=-10.0073	log10_qual_likelihood_position_model=3.03414	log10_strand_likelihood_position_model=0.55116	new_cov=3/2	polymorphism_quality=4.6	quality=4.6	quality_position_model=2.33697e-08	ref_cov=96/117	tot_cov=99/119
RA	1781	.	NC_007779	1552377	0	A	C	bias_e_value=3.93569e-11	bias_p_value=8.47054e-18	fisher_strand_p_value=1.92092e-19	frequency=1.488528e-01	genotype_quality=497.0	ks_quality_p_value=1	log10_base_likelihood=-26.2619	log10_qual_likelihood_position_model=34.4079	log10_strand_likelihood_position_model=18.7165	new_cov=0/35	polymorphism_quality=21.0	quality=21.0	quality_position_model=Inf	ref_cov=118/32	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=118/67
RA	1782	.	NC_007779	1562465	0	T	G	bias_e_value=19.5464	bias_p_value=4.20685e-06	fisher_strand_p_value=2.60302e-07	frequency=7.073069e-02	genotype_quality=454.9	ks_quality_p_value=1	log10_base_likelihood=-9.13078	log10_qual_likelihood_position_model=16.504	log10_strand_likelihood_position_model=6.58452	new_cov=16/0	polymorphism_quality=3.7	quality=3.7	quality_position_model=Inf	ref_cov=50/92	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=66/92
RA	1783	.	NC_007779	1562518	0	A	C	bias_e_value=0.211567	bias_p_value=4.55343e-08	fisher_strand_p_value=2.17381e-09	frequency=9.439898e-02	genotype_quality=291.8	ks_quality_p_value=1	log10_base_likelihood=-7.65853	log10_qual_likelihood_position_model=18.6668	log10_strand_likelihood_position_model=8.66278	new_cov=0/21	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=64/30	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=64/52
RA	1784	.	NC_007779	1573349	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1785	.	NC_007779	1573351	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1786	.	NC_007779	1573352	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1787	.	NC_007779	1573353	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1788	.	NC_007779	1573354	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1789	.	NC_007779	1573355	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1790	.	NC_007779	1573357	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1791	.	NC_007779	1573358	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1792	.	NC_007779	1573359	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1793	.	NC_007779	1573360	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1794	.	NC_007779	1573361	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1795	.	NC_007779	1573362	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1796	.	NC_007779	1573363	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1797	.	NC_007779	1573364	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1798	.	NC_007779	1573366	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1799	.	NC_007779	1573367	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1800	.	NC_007779	1573369	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1801	.	NC_007779	1573371	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1802	.	NC_007779	1573373	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1803	.	NC_007779	1573374	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1804	.	NC_007779	1573375	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1805	.	NC_007779	1573376	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1806	.	NC_007779	1573377	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1807	.	NC_007779	1573378	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1808	.	NC_007779	1573379	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1809	.	NC_007779	1573380	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	1810	.	NC_007779	1578837	0	A	C	bias_e_value=0.000119453	bias_p_value=2.5709e-11	fisher_strand_p_value=8.94459e-13	frequency=6.466579e-02	genotype_quality=592.3	ks_quality_p_value=1	log10_base_likelihood=-7.27009	log10_qual_likelihood_position_model=25.4025	log10_strand_likelihood_position_model=12.0484	new_cov=0/33	polymorphism_quality=1.8	quality=1.8	quality_position_model=Inf	ref_cov=115/71	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=115/104
RA	1811	.	NC_007779	1595838	1	.	C	bias_e_value=3865940	bias_p_value=0.832042	fisher_strand_p_value=1	frequency=1.092911e-02	genotype_quality=879.4	ks_quality_p_value=0.479642	log10_base_likelihood=-8.25104	log10_qual_likelihood_position_model=0.903429	log10_strand_likelihood_position_model=0.304407	new_cov=1/1	polymorphism_quality=2.8	quality=2.8	quality_position_model=5.35212e-09	ref_cov=80/101	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=81/102
RA	1812	.	NC_007779	1595839	0	C	.	bias_e_value=234844	bias_p_value=0.050544	fisher_strand_p_value=0.187693	frequency=1.080418e-02	genotype_quality=746.4	ks_quality_p_value=0.0469904	log10_base_likelihood=-5.59056	log10_qual_likelihood_position_model=2.20921	log10_strand_likelihood_position_model=0.726552	new_cov=2/0	polymorphism_quality=0.0	quality=0.0	quality_position_model=0.000204743	ref_cov=78/104	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=81/104
RA	1813	.	NC_007779	1595962	1	.	C	bias_e_value=2627310	bias_p_value=0.565459	fisher_strand_p_value=0.231402	frequency=1.162720e-02	genotype_quality=811.7	ks_quality_p_value=0.986413	log10_base_likelihood=-7.26528	log10_qual_likelihood_position_model=2.03716	log10_strand_likelihood_position_model=0.635633	new_cov=0/2	polymorphism_quality=1.8	quality=1.8	quality_position_model=1.84525e-06	ref_cov=89/81	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=89/83
RA	1814	.	NC_007779	1615814	0	C	A	frequency=1	genotype_quality=802.9	new_cov=106/103	quality=802.9	ref_cov=0/0	tot_cov=106/103
RA	1815	.	NC_007779	1626064	0	T	.	bias_e_value=1112650	bias_p_value=0.239468	fisher_strand_p_value=1	frequency=1.561737e-02	genotype_quality=756.5	ks_quality_p_value=0.0638328	log10_base_likelihood=-8.55342	log10_qual_likelihood_position_model=2.30338	log10_strand_likelihood_position_model=0.423701	new_cov=2/1	polymorphism_quality=3.1	quality=3.1	quality_position_model=9.64207e-08	ref_cov=94/95	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=96/96
RA	1816	.	NC_007779	1628027	0	G	T	bias_e_value=27.1752	bias_p_value=5.84874e-06	fisher_strand_p_value=4.02595e-07	frequency=2.620735e-01	genotype_quality=188.9	ks_quality_p_value=0.918892	log10_base_likelihood=-50.8751	log10_qual_likelihood_position_model=15.5323	log10_strand_likelihood_position_model=6.60747	new_cov=20/0	polymorphism_quality=45.8	quality=45.8	quality_position_model=5.49952e-31	ref_cov=21/35	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=41/35
RA	1817	.	NC_007779	1646737	0	T	A	bias_e_value=1984.89	bias_p_value=0.000427195	fisher_strand_p_value=3.82392e-05	frequency=4.568672e-02	genotype_quality=901.2	ks_quality_p_value=1	log10_base_likelihood=-8.26957	log10_qual_likelihood_position_model=21.0091	log10_strand_likelihood_position_model=4.41749	new_cov=0/13	polymorphism_quality=2.8	quality=2.8	quality_position_model=Inf	ref_cov=134/106	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=134/119
RA	1818	.	NC_007779	1646748	0	A	C	bias_e_value=0.00266938	bias_p_value=5.74514e-10	fisher_strand_p_value=2.25151e-11	frequency=4.161644e-02	genotype_quality=667.5	ks_quality_p_value=1	log10_base_likelihood=-6.83621	log10_qual_likelihood_position_model=23.9256	log10_strand_likelihood_position_model=10.6475	new_cov=0/26	polymorphism_quality=1.3	quality=1.3	quality_position_model=Inf	ref_cov=127/68	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=127/94
RA	1819	.	NC_007779	1651009	0	T	G	bias_e_value=1.40919e-05	bias_p_value=3.0329e-12	fisher_strand_p_value=9.79808e-14	frequency=9.994078e-02	genotype_quality=408.0	ks_quality_p_value=1	log10_base_likelihood=-14.067	log10_qual_likelihood_position_model=21.0247	log10_strand_likelihood_position_model=13.0089	new_cov=18/0	polymorphism_quality=8.7	quality=8.7	quality_position_model=Inf	ref_cov=15/102	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=33/102
RA	1820	.	NC_007779	1669599	0	C	.	frequency=1	genotype_quality=945.6	new_cov=87/104	quality=945.6	ref_cov=0/1	tot_cov=87/105
RA	1821	.	NC_007779	1671093	0	G	T	bias_e_value=3902.65	bias_p_value=0.000839943	fisher_strand_p_value=8.09799e-05	frequency=4.791927e-02	genotype_quality=774.7	ks_quality_p_value=0.994793	log10_base_likelihood=-9.64281	log10_qual_likelihood_position_model=12.3269	log10_strand_likelihood_position_model=4.32169	new_cov=0/16	polymorphism_quality=4.2	quality=4.2	quality_position_model=Inf	ref_cov=109/118	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=109/134
RA	1822	.	NC_007779	1677110	0	G	T	bias_e_value=5.60583	bias_p_value=1.20651e-06	fisher_strand_p_value=8.21254e-08	frequency=8.543301e-02	genotype_quality=692.6	ks_quality_p_value=0.839998	log10_base_likelihood=-16.4557	log10_qual_likelihood_position_model=25.3705	log10_strand_likelihood_position_model=7.29925	new_cov=0/25	polymorphism_quality=11.1	quality=11.1	quality_position_model=Inf	ref_cov=108/100	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=108/127
RA	1823	.	NC_007779	1681026	0	A	C	bias_e_value=0.00251866	bias_p_value=5.42075e-10	fisher_strand_p_value=2.11936e-11	frequency=6.843710e-02	genotype_quality=517.4	ks_quality_p_value=1	log10_base_likelihood=-7.12702	log10_qual_likelihood_position_model=21.7302	log10_strand_likelihood_position_model=10.6738	new_cov=0/30	polymorphism_quality=1.6	quality=1.6	quality_position_model=Inf	ref_cov=100/64	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=100/95
RA	1824	.	NC_007779	1681402	0	T	G	bias_e_value=6.67013	bias_p_value=1.43557e-06	fisher_strand_p_value=8.30636e-08	frequency=6.321573e-02	genotype_quality=476.9	ks_quality_p_value=0.99872	log10_base_likelihood=-10.4721	log10_qual_likelihood_position_model=14.914	log10_strand_likelihood_position_model=7.08059	new_cov=14/0	polymorphism_quality=5.0	quality=5.0	quality_position_model=Inf	ref_cov=39/102	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=53/102
RA	1825	.	NC_007779	1686463	0	A	C	bias_e_value=3.62266e-06	bias_p_value=7.79682e-13	fisher_strand_p_value=2.40965e-14	frequency=1.163611e-01	genotype_quality=428.4	ks_quality_p_value=1	log10_base_likelihood=-7.77586	log10_qual_likelihood_position_model=24.1744	log10_strand_likelihood_position_model=13.618	new_cov=0/30	polymorphism_quality=2.3	quality=2.3	quality_position_model=Inf	ref_cov=95/37	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=95/67
RA	1826	.	NC_007779	1700598	1	.	A	bias_e_value=775848	bias_p_value=0.166981	fisher_strand_p_value=0.499179	frequency=8.620262e-03	genotype_quality=1134.9	ks_quality_p_value=0.0790297	log10_base_likelihood=-7.94039	log10_qual_likelihood_position_model=1.37576	log10_strand_likelihood_position_model=0.559955	new_cov=2/0	polymorphism_quality=2.5	quality=2.5	quality_position_model=6.30512e-08	ref_cov=120/110	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=122/110
RA	1827	.	NC_007779	1703335	0	G	C	bias_e_value=1.89805e-05	bias_p_value=4.08506e-12	fisher_strand_p_value=1.33297e-13	frequency=8.789206e-02	genotype_quality=532.9	ks_quality_p_value=1	log10_base_likelihood=-15.7126	log10_qual_likelihood_position_model=16.8155	log10_strand_likelihood_position_model=12.8752	new_cov=14/0	polymorphism_quality=10.4	quality=10.4	quality_position_model=Inf	ref_cov=10/124	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=24/124
RA	1828	.	NC_007779	1710558	0	C	G	bias_e_value=42.6743	bias_p_value=9.18452e-06	fisher_strand_p_value=6.85945e-07	frequency=6.277895e-02	genotype_quality=640.7	ks_quality_p_value=0.873557	log10_base_likelihood=-6.84416	log10_qual_likelihood_position_model=23.7469	log10_strand_likelihood_position_model=6.16371	new_cov=0/17	polymorphism_quality=1.3	quality=1.3	quality_position_model=Inf	ref_cov=108/74	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=109/91
RA	1829	.	NC_007779	1713510	0	A	C	bias_e_value=3.21643e-15	bias_p_value=6.92252e-22	fisher_strand_p_value=1.28897e-23	frequency=1.553111e-01	genotype_quality=595.1	ks_quality_p_value=1	log10_base_likelihood=-30.5852	log10_qual_likelihood_position_model=47.3404	log10_strand_likelihood_position_model=22.8898	new_cov=0/53	polymorphism_quality=25.4	quality=25.4	quality_position_model=Inf	ref_cov=138/56	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=138/109
RA	1830	.	NC_007779	1716031	1	.	T	bias_e_value=4109710	bias_p_value=0.884507	fisher_strand_p_value=1	frequency=1.287556e-02	genotype_quality=1111.4	ks_quality_p_value=0.559671	log10_base_likelihood=-12.9625	log10_qual_likelihood_position_model=1.87354	log10_strand_likelihood_position_model=0.411528	new_cov=2/1	polymorphism_quality=7.6	quality=7.6	quality_position_model=1.01863e-12	ref_cov=118/112	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=120/113
RA	1831	.	NC_007779	1746048	0	C	A	bias_e_value=160866	bias_p_value=0.0346221	fisher_strand_p_value=0.00559733	frequency=3.308487e-02	genotype_quality=704.2	ks_quality_p_value=1	log10_base_likelihood=-6.80908	log10_qual_likelihood_position_model=11.2503	log10_strand_likelihood_position_model=2.54949	new_cov=10/0	polymorphism_quality=1.3	quality=1.3	quality_position_model=Inf	ref_cov=111/93	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=121/93
RA	1832	.	NC_007779	1758880	0	A	T	bias_e_value=147482	bias_p_value=0.0317415	fisher_strand_p_value=0.00504721	frequency=2.888966e-02	genotype_quality=744.5	ks_quality_p_value=1	log10_base_likelihood=-6.05143	log10_qual_likelihood_position_model=10.3311	log10_strand_likelihood_position_model=2.29695	new_cov=6/0	polymorphism_quality=0.5	quality=0.5	quality_position_model=Inf	ref_cov=75/111	reject=EVALUE,POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=81/111
RA	1833	.	NC_007779	1759411	1	.	T	bias_e_value=4646000	bias_p_value=0.999929	fisher_strand_p_value=1	frequency=9.900093e-03	genotype_quality=974.9	ks_quality_p_value=0.988091	log10_base_likelihood=-7.04341	log10_qual_likelihood_position_model=3.8304	log10_strand_likelihood_position_model=0.299258	new_cov=1/1	polymorphism_quality=1.5	quality=1.5	quality_position_model=0.000108229	ref_cov=97/103	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=98/104
RA	1834	.	NC_007779	1763744	0	C	A	bias_e_value=7.7352	bias_p_value=1.6648e-06	fisher_strand_p_value=9.74081e-08	frequency=5.648565e-02	genotype_quality=722.0	ks_quality_p_value=0.996693	log10_base_likelihood=-8.55359	log10_qual_likelihood_position_model=18.7348	log10_strand_likelihood_position_model=7.0114	new_cov=20/0	polymorphism_quality=3.1	quality=3.1	quality_position_model=Inf	ref_cov=88/122	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=108/122
RA	1835	.	NC_007779	1777181	0	A	C	bias_e_value=1.13312	bias_p_value=2.43874e-07	fisher_strand_p_value=1.27147e-08	frequency=5.040598e-02	genotype_quality=581.3	ks_quality_p_value=1	log10_base_likelihood=-5.80545	log10_qual_likelihood_position_model=30.5851	log10_strand_likelihood_position_model=7.92719	new_cov=0/28	polymorphism_quality=0.3	quality=0.3	quality_position_model=Inf	ref_cov=103/98	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=103/126
RA	1836	.	NC_007779	1781197	1	.	T	bias_e_value=101372	bias_p_value=0.0218176	fisher_strand_p_value=0.091261	frequency=1.415062e-02	genotype_quality=1023.7	ks_quality_p_value=0.0355128	log10_base_likelihood=-12.5881	log10_qual_likelihood_position_model=2.26242	log10_strand_likelihood_position_model=1.03971	new_cov=3/0	polymorphism_quality=7.2	quality=7.2	quality_position_model=2.68286e-11	ref_cov=93/116	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=96/116
RA	1837	.	NC_007779	1801436	0	C	A	bias_e_value=1652.46	bias_p_value=0.000355647	fisher_strand_p_value=3.12974e-05	frequency=6.028795e-02	genotype_quality=625.2	ks_quality_p_value=0.999181	log10_base_likelihood=-7.21187	log10_qual_likelihood_position_model=9.58208	log10_strand_likelihood_position_model=4.50449	new_cov=0/14	polymorphism_quality=1.7	quality=1.7	quality_position_model=Inf	ref_cov=97/81	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=97/95
RA	1838	.	NC_007779	1801443	0	A	C	bias_e_value=3.44423e-09	bias_p_value=7.4128e-16	fisher_strand_p_value=1.87595e-17	frequency=1.087437e-01	genotype_quality=515.4	ks_quality_p_value=1	log10_base_likelihood=-8.61333	log10_qual_likelihood_position_model=32.2713	log10_strand_likelihood_position_model=16.7268	new_cov=0/40	polymorphism_quality=3.1	quality=3.1	quality_position_model=Inf	ref_cov=112/50	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=112/90
RA	1839	.	NC_007779	1801456	0	C	G	bias_e_value=60.9468	bias_p_value=1.31172e-05	fisher_strand_p_value=8.90139e-07	frequency=6.677580e-02	genotype_quality=659.1	ks_quality_p_value=0.985955	log10_base_likelihood=-6.71301	log10_qual_likelihood_position_model=15.6884	log10_strand_likelihood_position_model=6.05054	new_cov=0/18	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=109/84	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=109/103
RA	1840	.	NC_007779	1816123	0	T	C	bias_e_value=1169480	bias_p_value=0.2517	fisher_strand_p_value=0.0754159	frequency=2.320862e-02	genotype_quality=809.1	ks_quality_p_value=0.906105	log10_base_likelihood=-9.58863	log10_qual_likelihood_position_model=4.10452	log10_strand_likelihood_position_model=1.19998	new_cov=0/5	polymorphism_quality=4.1	quality=4.1	quality_position_model=3.87518e-06	ref_cov=90/119	reject=POLYMORPHISM_STRAND	tot_cov=91/124
RA	1841	.	NC_007779	1816124	0	A	G	bias_e_value=1187070	bias_p_value=0.255485	fisher_strand_p_value=0.0743615	frequency=2.314281e-02	genotype_quality=814.4	ks_quality_p_value=0.937997	log10_base_likelihood=-9.58693	log10_qual_likelihood_position_model=3.97254	log10_strand_likelihood_position_model=1.2102	new_cov=0/5	polymorphism_quality=4.1	quality=4.1	quality_position_model=2.90216e-06	ref_cov=91/119	reject=POLYMORPHISM_STRAND	tot_cov=91/124
RA	1842	.	NC_007779	1816126	0	C	G	bias_e_value=1288670	bias_p_value=0.277352	fisher_strand_p_value=0.0782145	frequency=2.299500e-02	genotype_quality=889.0	ks_quality_p_value=0.999114	log10_base_likelihood=-10.1929	log10_qual_likelihood_position_model=4.94378	log10_strand_likelihood_position_model=1.17488	new_cov=0/5	polymorphism_quality=4.8	quality=4.8	quality_position_model=6.42965e-06	ref_cov=89/121	reject=POLYMORPHISM_STRAND	tot_cov=89/126
RA	1843	.	NC_007779	1816136	0	G	T	bias_e_value=2053030	bias_p_value=0.441861	fisher_strand_p_value=0.159262	frequency=2.391052e-02	genotype_quality=844.5	ks_quality_p_value=0.966148	log10_base_likelihood=-8.67499	log10_qual_likelihood_position_model=4.86065	log10_strand_likelihood_position_model=1.10934	new_cov=0/5	polymorphism_quality=3.2	quality=3.2	quality_position_model=0.00018089	ref_cov=82/120	reject=POLYMORPHISM_STRAND	tot_cov=83/125
RA	1844	.	NC_007779	1816138	0	C	G	bias_e_value=2092580	bias_p_value=0.450373	fisher_strand_p_value=0.158813	frequency=2.460766e-02	genotype_quality=819.9	ks_quality_p_value=0.997741	log10_base_likelihood=-10.8168	log10_qual_likelihood_position_model=4.66312	log10_strand_likelihood_position_model=1.05571	new_cov=0/5	polymorphism_quality=5.4	quality=5.4	quality_position_model=5.49022e-07	ref_cov=77/120	reject=POLYMORPHISM_STRAND	tot_cov=77/125
RA	1845	.	NC_007779	1816139	0	A	C	bias_e_value=2083390	bias_p_value=0.448395	fisher_strand_p_value=0.158813	frequency=2.463150e-02	genotype_quality=764.9	ks_quality_p_value=0.990994	log10_base_likelihood=-12.865	log10_qual_likelihood_position_model=3.79843	log10_strand_likelihood_position_model=1.05571	new_cov=0/5	polymorphism_quality=7.5	quality=7.5	quality_position_model=5.42427e-10	ref_cov=77/120	reject=POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=77/125
RA	1846	.	NC_007779	1816140	0	C	T	bias_e_value=2095310	bias_p_value=0.45096	fisher_strand_p_value=0.158813	frequency=2.303696e-02	genotype_quality=816.8	ks_quality_p_value=0.999749	log10_base_likelihood=-7.9465	log10_qual_likelihood_position_model=4.51077	log10_strand_likelihood_position_model=1.05571	new_cov=0/5	polymorphism_quality=2.5	quality=2.5	quality_position_model=0.000404436	ref_cov=77/120	reject=POLYMORPHISM_STRAND	tot_cov=77/125
RA	1847	.	NC_007779	1816141	0	C	G	bias_e_value=2090200	bias_p_value=0.44986	fisher_strand_p_value=0.158813	frequency=2.460098e-02	genotype_quality=836.1	ks_quality_p_value=0.995987	log10_base_likelihood=-10.7837	log10_qual_likelihood_position_model=4.50279	log10_strand_likelihood_position_model=1.05571	new_cov=0/5	polymorphism_quality=5.4	quality=5.4	quality_position_model=4.04935e-07	ref_cov=77/120	reject=POLYMORPHISM_STRAND	tot_cov=77/125
RA	1848	.	NC_007779	1816162	0	T	C	bias_e_value=396493	bias_p_value=0.0853346	fisher_strand_p_value=0.0743615	frequency=2.369976e-02	genotype_quality=719.7	ks_quality_p_value=0.22554	log10_base_likelihood=-10.7002	log10_qual_likelihood_position_model=3.62303	log10_strand_likelihood_position_model=1.2102	new_cov=0/5	polymorphism_quality=5.3	quality=5.3	quality_position_model=8.7522e-08	ref_cov=91/119	reject=POLYMORPHISM_STRAND	tot_cov=94/124
RA	1849	.	NC_007779	1816164	0	T	A	bias_e_value=1029490	bias_p_value=0.22157	fisher_strand_p_value=0.066683	frequency=2.268505e-02	genotype_quality=779.4	ks_quality_p_value=0.86151	log10_base_likelihood=-8.07027	log10_qual_likelihood_position_model=5.73741	log10_strand_likelihood_position_model=1.30026	new_cov=0/5	polymorphism_quality=2.6	quality=2.6	quality_position_model=0.0128739	ref_cov=91/108	reject=POLYMORPHISM_STRAND	tot_cov=91/113
RA	1850	.	NC_007779	1816165	0	T	C	bias_e_value=369427	bias_p_value=0.0795094	fisher_strand_p_value=0.066683	frequency=2.447033e-02	genotype_quality=773.2	ks_quality_p_value=0.230366	log10_base_likelihood=-11.4828	log10_qual_likelihood_position_model=3.13295	log10_strand_likelihood_position_model=1.30026	new_cov=0/5	polymorphism_quality=6.1	quality=6.1	quality_position_model=5.27176e-09	ref_cov=91/108	reject=POLYMORPHISM_STRAND	tot_cov=91/113
RA	1851	.	NC_007779	1816166	0	T	C	bias_e_value=465495	bias_p_value=0.100186	fisher_strand_p_value=0.066683	frequency=2.443123e-02	genotype_quality=780.5	ks_quality_p_value=0.307407	log10_base_likelihood=-10.6421	log10_qual_likelihood_position_model=4.41713	log10_strand_likelihood_position_model=1.30026	new_cov=0/5	polymorphism_quality=5.2	quality=5.2	quality_position_model=8.31397e-07	ref_cov=91/108	reject=POLYMORPHISM_STRAND	tot_cov=91/113
RA	1852	.	NC_007779	1816168	0	T	C	bias_e_value=392455	bias_p_value=0.0844656	fisher_strand_p_value=0.066683	frequency=2.442169e-02	genotype_quality=774.5	ks_quality_p_value=0.248328	log10_base_likelihood=-10.2608	log10_qual_likelihood_position_model=4.93591	log10_strand_likelihood_position_model=1.30026	new_cov=0/5	polymorphism_quality=4.8	quality=4.8	quality_position_model=7.24807e-06	ref_cov=91/108	reject=POLYMORPHISM_STRAND	tot_cov=91/113
RA	1853	.	NC_007779	1816172	0	C	A	bias_e_value=635855	bias_p_value=0.136851	fisher_strand_p_value=0.063729	frequency=2.436829e-02	genotype_quality=837.9	ks_quality_p_value=0.478162	log10_base_likelihood=-12.4592	log10_qual_likelihood_position_model=4.22179	log10_strand_likelihood_position_model=1.35048	new_cov=0/5	polymorphism_quality=7.1	quality=7.1	quality_position_model=7.75182e-09	ref_cov=94/106	reject=POLYMORPHISM_STRAND	tot_cov=94/111
RA	1854	.	NC_007779	1816177	0	T	G	bias_e_value=217695	bias_p_value=0.0468531	fisher_strand_p_value=0.0633077	frequency=2.475166e-02	genotype_quality=787.0	ks_quality_p_value=0.127109	log10_base_likelihood=-15.8011	log10_qual_likelihood_position_model=2.16496	log10_strand_likelihood_position_model=1.35837	new_cov=0/5	polymorphism_quality=10.5	quality=10.5	quality_position_model=2.39002e-14	ref_cov=93/104	reject=POLYMORPHISM_STRAND	tot_cov=93/109
RA	1855	.	NC_007779	1816183	0	T	C	bias_e_value=122256	bias_p_value=0.0263123	fisher_strand_p_value=0.0704534	frequency=2.353382e-02	genotype_quality=802.3	ks_quality_p_value=0.0573579	log10_base_likelihood=-10.9071	log10_qual_likelihood_position_model=4.03125	log10_strand_likelihood_position_model=1.25179	new_cov=0/5	polymorphism_quality=5.5	quality=5.5	quality_position_model=1.56178e-07	ref_cov=92/115	reject=POLYMORPHISM_STRAND	tot_cov=92/120
RA	1856	.	NC_007779	1816189	0	G	T	bias_e_value=146332	bias_p_value=0.0314941	fisher_strand_p_value=0.0806846	frequency=2.326870e-02	genotype_quality=869.8	ks_quality_p_value=0.0619757	log10_base_likelihood=-8.09549	log10_qual_likelihood_position_model=5.47668	log10_strand_likelihood_position_model=1.1544	new_cov=0/5	polymorphism_quality=2.6	quality=2.6	quality_position_model=0.00410472	ref_cov=87/121	reject=POLYMORPHISM_STRAND	tot_cov=87/126
RA	1857	.	NC_007779	1816193	0	A	G	bias_e_value=625286	bias_p_value=0.134576	fisher_strand_p_value=0.159743	frequency=2.373981e-02	genotype_quality=797.5	ks_quality_p_value=0.186695	log10_base_likelihood=-10.6216	log10_qual_likelihood_position_model=3.82447	log10_strand_likelihood_position_model=1.1233	new_cov=0/5	polymorphism_quality=5.2	quality=5.2	quality_position_model=1.38694e-07	ref_cov=84/121	reject=POLYMORPHISM_STRAND	tot_cov=84/126
RA	1858	.	NC_007779	1816195	0	C	G	bias_e_value=317419	bias_p_value=0.0683161	fisher_strand_p_value=0.081709	frequency=2.472591e-02	genotype_quality=836.4	ks_quality_p_value=0.155895	log10_base_likelihood=-12.9727	log10_qual_likelihood_position_model=3.37962	log10_strand_likelihood_position_model=1.14584	new_cov=0/5	polymorphism_quality=7.6	quality=7.6	quality_position_model=1.93632e-10	ref_cov=82/115	reject=POLYMORPHISM_STRAND	tot_cov=82/120
RA	1859	.	NC_007779	1816206	0	A	G	bias_e_value=2925420	bias_p_value=0.62962	fisher_strand_p_value=0.40515	frequency=2.614117e-02	genotype_quality=875.7	ks_quality_p_value=0.677996	log10_base_likelihood=-13.279	log10_qual_likelihood_position_model=2.51303	log10_strand_likelihood_position_model=0.748298	new_cov=1/5	polymorphism_quality=7.9	quality=7.9	quality_position_model=4.79843e-12	ref_cov=92/131	reject=POLYMORPHISM_STRAND	tot_cov=93/136
RA	1860	.	NC_007779	1816207	0	G	C	bias_e_value=1089620	bias_p_value=0.234512	fisher_strand_p_value=0.0804584	frequency=2.153587e-02	genotype_quality=952.6	ks_quality_p_value=0.77109	log10_base_likelihood=-13.1121	log10_qual_likelihood_position_model=3.14657	log10_strand_likelihood_position_model=1.15705	new_cov=0/5	polymorphism_quality=7.7	quality=7.7	quality_position_model=8.26141e-11	ref_cov=95/132	reject=POLYMORPHISM_STRAND	tot_cov=95/137
RA	1861	.	NC_007779	1820099	0	A	C	bias_e_value=0.000105833	bias_p_value=2.27777e-11	fisher_strand_p_value=7.89029e-13	frequency=1.221242e-01	genotype_quality=484.0	ks_quality_p_value=1	log10_base_likelihood=-22.1179	log10_qual_likelihood_position_model=21.4024	log10_strand_likelihood_position_model=12.1029	new_cov=0/27	polymorphism_quality=16.9	quality=16.9	quality_position_model=Inf	ref_cov=109/47	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=109/74
RA	1862	.	NC_007779	1837206	0	G	T	bias_e_value=0.0114303	bias_p_value=2.46007e-09	fisher_strand_p_value=1.0264e-10	frequency=9.522533e-02	genotype_quality=548.0	ks_quality_p_value=0.998612	log10_base_likelihood=-22.7694	log10_qual_likelihood_position_model=19.3832	log10_strand_likelihood_position_model=9.98868	new_cov=16/0	polymorphism_quality=17.5	quality=17.5	quality_position_model=Inf	ref_cov=28/116	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=44/116
RA	1863	.	NC_007779	1844073	0	G	A	frequency=1	genotype_quality=981.1	new_cov=118/128	quality=981.1	ref_cov=0/0	tot_cov=118/128
RA	1864	.	NC_007779	1844628	0	A	G	bias_e_value=101.608	bias_p_value=2.18684e-05	fisher_strand_p_value=1.5189e-06	frequency=4.687119e-02	genotype_quality=427.2	ks_quality_p_value=1	log10_base_likelihood=-7.2169	log10_qual_likelihood_position_model=7.96157	log10_strand_likelihood_position_model=5.81847	new_cov=6/0	polymorphism_quality=1.7	quality=1.7	quality_position_model=Inf	ref_cov=9/103	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=15/103
RA	1865	.	NC_007779	1864917	0	G	A	bias_e_value=612997	bias_p_value=0.131931	fisher_strand_p_value=0.10545	frequency=2.223969e-02	genotype_quality=1068.8	ks_quality_p_value=0.275703	log10_base_likelihood=-10.6145	log10_qual_likelihood_position_model=5.87548	log10_strand_likelihood_position_model=1.12581	new_cov=5/1	polymorphism_quality=5.2	quality=5.2	quality_position_model=1.96308e-05	ref_cov=122/139	reject=POLYMORPHISM_STRAND	tot_cov=127/140
RA	1866	.	NC_007779	1864922	0	C	G	bias_e_value=2285050	bias_p_value=0.491797	fisher_strand_p_value=0.481094	frequency=2.872181e-02	genotype_quality=1045.3	ks_quality_p_value=0.377956	log10_base_likelihood=-18.2414	log10_qual_likelihood_position_model=5.97888	log10_strand_likelihood_position_model=0.714451	new_cov=5/3	polymorphism_quality=12.9	quality=12.9	quality_position_model=1.32118e-13	ref_cov=117/134	tot_cov=122/137
RA	1867	.	NC_007779	1864931	0	C	T	bias_e_value=1213740	bias_p_value=0.261226	fisher_strand_p_value=0.0989267	frequency=6.807232e-02	genotype_quality=1022.3	ks_quality_p_value=0.726996	log10_base_likelihood=-43.655	log10_qual_likelihood_position_model=8.78841	log10_strand_likelihood_position_model=1.35938	new_cov=13/6	polymorphism_quality=38.5	quality=38.5	quality_position_model=8.62075e-36	ref_cov=124/135	tot_cov=137/141
RA	1868	.	NC_007779	1864956	0	C	A	bias_e_value=1390120	bias_p_value=0.299186	fisher_strand_p_value=0.155559	frequency=6.975126e-02	genotype_quality=1069.4	ks_quality_p_value=0.558604	log10_base_likelihood=-44.9026	log10_qual_likelihood_position_model=7.45443	log10_strand_likelihood_position_model=1.22034	new_cov=13/6	polymorphism_quality=39.8	quality=39.8	quality_position_model=1.57825e-38	ref_cov=127/126	tot_cov=140/132
RA	1869	.	NC_007779	1864964	0	A	G	bias_e_value=741977	bias_p_value=0.159691	fisher_strand_p_value=0.23247	frequency=7.098961e-02	genotype_quality=903.9	ks_quality_p_value=0.160085	log10_base_likelihood=-47.6106	log10_qual_likelihood_position_model=10.0933	log10_strand_likelihood_position_model=1.15248	new_cov=13/6	polymorphism_quality=42.5	quality=42.5	quality_position_model=1.14918e-38	ref_cov=126/119	tot_cov=139/125
RA	1870	.	NC_007779	1864968	0	A	C	bias_e_value=1595730	bias_p_value=0.343438	fisher_strand_p_value=0.154383	frequency=7.238102e-02	genotype_quality=903.7	ks_quality_p_value=0.685277	log10_base_likelihood=-62.1901	log10_qual_likelihood_position_model=8.36787	log10_strand_likelihood_position_model=1.22953	new_cov=13/6	polymorphism_quality=57.2	quality=57.2	quality_position_model=5.66456e-55	ref_cov=122/122	tot_cov=135/129
RA	1871	.	NC_007779	1864970	0	C	G	bias_e_value=1392820	bias_p_value=0.299768	fisher_strand_p_value=0.222149	frequency=6.919861e-02	genotype_quality=1015.9	ks_quality_p_value=0.392231	log10_base_likelihood=-54.2825	log10_qual_likelihood_position_model=7.37906	log10_strand_likelihood_position_model=1.12458	new_cov=12/6	polymorphism_quality=49.2	quality=49.2	quality_position_model=3.95257e-48	ref_cov=120/122	tot_cov=132/128
RA	1872	.	NC_007779	1864971	0	A	G	bias_e_value=1403210	bias_p_value=0.302003	fisher_strand_p_value=0.222582	frequency=6.994772e-02	genotype_quality=870.3	ks_quality_p_value=0.395593	log10_base_likelihood=-47.5492	log10_qual_likelihood_position_model=8.51878	log10_strand_likelihood_position_model=1.11399	new_cov=12/6	polymorphism_quality=42.5	quality=42.5	quality_position_model=3.1609e-40	ref_cov=119/120	tot_cov=131/126
RA	1873	.	NC_007779	1864976	0	T	C	bias_e_value=2539120	bias_p_value=0.546478	fisher_strand_p_value=0.223564	frequency=6.859493e-02	genotype_quality=893.4	ks_quality_p_value=0.964601	log10_base_likelihood=-45.2792	log10_qual_likelihood_position_model=7.32828	log10_strand_likelihood_position_model=1.10472	new_cov=12/6	polymorphism_quality=40.2	quality=40.2	quality_position_model=3.76862e-39	ref_cov=122/122	tot_cov=134/128
RA	1874	.	NC_007779	1864979	0	C	G	bias_e_value=2565310	bias_p_value=0.552114	fisher_strand_p_value=0.222582	frequency=6.999254e-02	genotype_quality=1002.9	ks_quality_p_value=0.985454	log10_base_likelihood=-51.9532	log10_qual_likelihood_position_model=8.81857	log10_strand_likelihood_position_model=1.11399	new_cov=12/6	polymorphism_quality=46.9	quality=46.9	quality_position_model=2.36332e-44	ref_cov=119/120	tot_cov=131/126
RA	1875	.	NC_007779	1864988	1	.	G	bias_e_value=2600670	bias_p_value=0.559726	fisher_strand_p_value=0.224554	frequency=7.563066e-02	genotype_quality=990.2	ks_quality_p_value=0.999313	log10_base_likelihood=-87.6228	log10_qual_likelihood_position_model=8.99545	log10_strand_likelihood_position_model=1.0786	new_cov=12/6	polymorphism_quality=82.7	quality=82.7	quality_position_model=5.16845e-80	ref_cov=111/109	tot_cov=123/115
RA	1876	.	NC_007779	1864990	0	T	G	bias_e_value=2154860	bias_p_value=0.463776	fisher_strand_p_value=0.224554	frequency=7.564020e-02	genotype_quality=821.1	ks_quality_p_value=0.738445	log10_base_likelihood=-59.901	log10_qual_likelihood_position_model=7.76708	log10_strand_likelihood_position_model=1.0786	new_cov=12/6	polymorphism_quality=54.9	quality=54.9	quality_position_model=1.98124e-53	ref_cov=111/109	tot_cov=123/115
RA	1877	.	NC_007779	1864993	0	A	.	bias_e_value=3213090	bias_p_value=0.691533	fisher_strand_p_value=0.328263	frequency=7.256985e-02	genotype_quality=921.6	ks_quality_p_value=0.993469	log10_base_likelihood=-61.3464	log10_qual_likelihood_position_model=8.87555	log10_strand_likelihood_position_model=0.986167	new_cov=12/6	polymorphism_quality=56.3	quality=56.3	quality_position_model=7.34118e-54	ref_cov=121/109	tot_cov=133/115
RA	1878	.	NC_007779	1864994	0	A	C	bias_e_value=3219930	bias_p_value=0.693005	fisher_strand_p_value=0.328263	frequency=7.255268e-02	genotype_quality=862.9	ks_quality_p_value=0.997479	log10_base_likelihood=-58.626	log10_qual_likelihood_position_model=8.32073	log10_strand_likelihood_position_model=0.986167	new_cov=12/6	polymorphism_quality=53.6	quality=53.6	quality_position_model=1.09798e-51	ref_cov=121/109	tot_cov=133/115
RA	1879	.	NC_007779	1865000	0	G	C	bias_e_value=3844650	bias_p_value=0.827459	fisher_strand_p_value=0.482904	frequency=8.293724e-02	genotype_quality=875.2	ks_quality_p_value=0.980439	log10_base_likelihood=-56.7339	log10_qual_likelihood_position_model=8.58204	log10_strand_likelihood_position_model=0.832049	new_cov=12/7	polymorphism_quality=51.7	quality=51.7	quality_position_model=1.11893e-49	ref_cov=114/96	tot_cov=126/103
RA	1880	.	NC_007779	1865010	0	G	A	bias_e_value=4586500	bias_p_value=0.987124	fisher_strand_p_value=1	frequency=5.163097e-02	genotype_quality=877.2	ks_quality_p_value=0.843876	log10_base_likelihood=-27.8685	log10_qual_likelihood_position_model=5.28723	log10_strand_likelihood_position_model=0.651628	new_cov=7/5	polymorphism_quality=22.7	quality=22.7	quality_position_model=4.01554e-24	ref_cov=118/102	tot_cov=125/107
RA	1881	.	NC_007779	1865012	0	T	C	bias_e_value=4520180	bias_p_value=0.972849	fisher_strand_p_value=0.77621	frequency=5.396843e-02	genotype_quality=821.5	ks_quality_p_value=1	log10_base_likelihood=-29.0845	log10_qual_likelihood_position_model=6.88113	log10_strand_likelihood_position_model=0.699551	new_cov=8/5	polymorphism_quality=23.9	quality=23.9	quality_position_model=1.08079e-23	ref_cov=118/100	tot_cov=126/105
RA	1882	.	NC_007779	1867797	0	G	T	bias_e_value=6769.58	bias_p_value=0.00145697	fisher_strand_p_value=0.000148438	frequency=4.447269e-02	genotype_quality=718.6	ks_quality_p_value=1	log10_base_likelihood=-5.7287	log10_qual_likelihood_position_model=16.4838	log10_strand_likelihood_position_model=3.85671	new_cov=0/14	polymorphism_quality=0.2	quality=0.2	quality_position_model=Inf	ref_cov=96/101	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=96/116
RA	1883	.	NC_007779	1879404	0	A	C	bias_e_value=2.16586e-06	bias_p_value=4.66143e-13	fisher_strand_p_value=1.41739e-14	frequency=7.883024e-02	genotype_quality=523.8	ks_quality_p_value=1	log10_base_likelihood=-17.2197	log10_qual_likelihood_position_model=19.5019	log10_strand_likelihood_position_model=13.8485	new_cov=0/17	polymorphism_quality=11.9	quality=11.9	quality_position_model=Inf	ref_cov=135/16	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=135/33
RA	1884	.	NC_007779	1879996	0	G	T	bias_e_value=244.13	bias_p_value=5.25426e-05	fisher_strand_p_value=3.90561e-06	frequency=5.942535e-02	genotype_quality=666.7	ks_quality_p_value=1	log10_base_likelihood=-11.4566	log10_qual_likelihood_position_model=11.21	log10_strand_likelihood_position_model=5.40831	new_cov=12/0	polymorphism_quality=6.0	quality=6.0	quality_position_model=Inf	ref_cov=60/121	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=72/121
RA	1885	.	NC_007779	1889730	0	A	.	bias_e_value=2329280	bias_p_value=0.501315	fisher_strand_p_value=1	frequency=1.344299e-02	genotype_quality=884.6	ks_quality_p_value=0.187467	log10_base_likelihood=-8.16019	log10_qual_likelihood_position_model=2.62844	log10_strand_likelihood_position_model=0.371001	new_cov=2/1	polymorphism_quality=2.7	quality=2.7	quality_position_model=4.72428e-07	ref_cov=127/93	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=129/94
RA	1886	.	NC_007779	1906475	1	.	C	bias_e_value=897583	bias_p_value=0.193181	fisher_strand_p_value=0.0893755	frequency=1.435375e-02	genotype_quality=993.3	ks_quality_p_value=0.534948	log10_base_likelihood=-13.9807	log10_qual_likelihood_position_model=2.26179	log10_strand_likelihood_position_model=1.04878	new_cov=3/0	polymorphism_quality=8.6	quality=8.6	quality_position_model=1.03624e-12	ref_cov=91/115	reject=POLYMORPHISM_STRAND	tot_cov=94/115
RA	1887	.	NC_007779	1906477	1	.	G	bias_e_value=108690	bias_p_value=0.0233927	fisher_strand_p_value=0.00353016	frequency=3.370571e-02	genotype_quality=807.6	ks_quality_p_value=0.996479	log10_base_likelihood=-23.886	log10_qual_likelihood_position_model=7.54002	log10_strand_likelihood_position_model=2.45221	new_cov=6/0	polymorphism_quality=18.6	quality=18.6	quality_position_model=5.44976e-16	ref_cov=65/107	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=71/107
RA	1888	.	NC_007779	1906482	0	C	G	bias_e_value=214.853	bias_p_value=4.62414e-05	fisher_strand_p_value=3.40511e-06	frequency=5.260468e-02	genotype_quality=614.5	ks_quality_p_value=0.999188	log10_base_likelihood=-10.3913	log10_qual_likelihood_position_model=13.2903	log10_strand_likelihood_position_model=5.46787	new_cov=12/0	polymorphism_quality=5.0	quality=5.0	quality_position_model=Inf	ref_cov=54/112	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=66/112
RA	1889	.	NC_007779	1906488	0	G	T	bias_e_value=1.29362	bias_p_value=2.78417e-07	fisher_strand_p_value=1.46222e-08	frequency=9.168577e-02	genotype_quality=617.5	ks_quality_p_value=1	log10_base_likelihood=-18.8083	log10_qual_likelihood_position_model=15.9433	log10_strand_likelihood_position_model=7.83499	new_cov=18/0	polymorphism_quality=13.5	quality=13.5	quality_position_model=Inf	ref_cov=54/109	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=72/109
RA	1890	.	NC_007779	1918872	0	T	A	frequency=1	genotype_quality=800.4	new_cov=122/87	quality=800.4	ref_cov=0/0	tot_cov=122/87
RA	1891	.	NC_007779	1920746	0	G	T	bias_e_value=39.8293	bias_p_value=8.5722e-06	fisher_strand_p_value=5.56584e-07	frequency=4.239655e-02	genotype_quality=805.1	ks_quality_p_value=1	log10_base_likelihood=-8.23729	log10_qual_likelihood_position_model=14.637	log10_strand_likelihood_position_model=6.25447	new_cov=0/15	polymorphism_quality=2.8	quality=2.8	quality_position_model=Inf	ref_cov=140/79	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=140/94
RA	1892	.	NC_007779	1956118	0	C	A	bias_e_value=1654.02	bias_p_value=0.000355984	fisher_strand_p_value=3.40811e-05	frequency=4.502106e-02	genotype_quality=425.5	ks_quality_p_value=0.918521	log10_base_likelihood=-12.3707	log10_qual_likelihood_position_model=6.93168	log10_strand_likelihood_position_model=4.46749	new_cov=0/5	polymorphism_quality=7.0	quality=7.0	quality_position_model=0.0152083	ref_cov=95/11	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=95/16
RA	1893	.	NC_007779	1971508	0	A	C	bias_e_value=9.95794e-09	bias_p_value=2.14318e-15	fisher_strand_p_value=5.59005e-17	frequency=1.320863e-01	genotype_quality=406.0	ks_quality_p_value=0.997762	log10_base_likelihood=-30.1936	log10_qual_likelihood_position_model=23.1011	log10_strand_likelihood_position_model=16.2526	new_cov=0/20	polymorphism_quality=25.0	quality=25.0	quality_position_model=Inf	ref_cov=113/11	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=113/31
RA	1894	.	NC_007779	1973476	0	G	A	frequency=1	genotype_quality=887.1	new_cov=105/124	quality=887.1	ref_cov=1/0	tot_cov=106/124
RA	1895	.	NC_007779	1980091	0	C	T	bias_e_value=2023740	bias_p_value=0.435557	fisher_strand_p_value=0.156861	frequency=1.049328e-02	genotype_quality=1562.9	ks_quality_p_value=0.959586	log10_base_likelihood=-6.63863	log10_qual_likelihood_position_model=2.67049	log10_strand_likelihood_position_model=0.875148	new_cov=4/0	polymorphism_quality=1.1	quality=1.1	quality_position_model=6.97498e-05	ref_cov=225/149	reject=EVALUE,POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=229/149
RA	1896	.	NC_007779	1993884	0	C	A	bias_e_value=162795	bias_p_value=0.0350372	fisher_strand_p_value=0.00567749	frequency=2.695751e-02	genotype_quality=808.6	ks_quality_p_value=1	log10_base_likelihood=-8.13299	log10_qual_likelihood_position_model=7.79738	log10_strand_likelihood_position_model=2.24584	new_cov=0/6	polymorphism_quality=2.7	quality=2.7	quality_position_model=Inf	ref_cov=121/85	reject=POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=121/91
RA	1897	.	NC_007779	1993894	0	A	C	bias_e_value=0.123518	bias_p_value=2.6584e-08	fisher_strand_p_value=1.2358e-09	frequency=8.260679e-02	genotype_quality=666.8	ks_quality_p_value=1	log10_base_likelihood=-19.3006	log10_qual_likelihood_position_model=24.9279	log10_strand_likelihood_position_model=8.90805	new_cov=0/24	polymorphism_quality=14.0	quality=14.0	quality_position_model=Inf	ref_cov=119/76	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=119/101
RA	1898	.	NC_007779	1999234	0	T	G	bias_e_value=324.233	bias_p_value=6.97825e-05	fisher_strand_p_value=5.30816e-06	frequency=8.730268e-02	genotype_quality=323.4	ks_quality_p_value=1	log10_base_likelihood=-5.677	log10_qual_likelihood_position_model=14.6671	log10_strand_likelihood_position_model=5.34787	new_cov=17/0	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=44/56	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=61/56
RA	1899	.	NC_007779	1999251	0	T	G	bias_e_value=47.9509	bias_p_value=1.03202e-05	fisher_strand_p_value=6.78829e-07	frequency=9.307003e-02	genotype_quality=404.6	ks_quality_p_value=1	log10_base_likelihood=-5.64946	log10_qual_likelihood_position_model=21.5245	log10_strand_likelihood_position_model=6.35262	new_cov=23/0	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=56/60	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=79/60
RA	1900	.	NC_007779	2004055	0	A	C	bias_e_value=2.54057e-17	bias_p_value=5.46791e-24	fisher_strand_p_value=9.32541e-26	frequency=2.826743e-01	genotype_quality=327.5	ks_quality_p_value=1	log10_base_likelihood=-53.5412	log10_qual_likelihood_position_model=37.2767	log10_strand_likelihood_position_model=25.0303	new_cov=0/60	polymorphism_quality=48.5	quality=48.5	quality_position_model=Inf	ref_cov=90/29	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=90/89
RA	1901	.	NC_007779	2005401	0	C	T	frequency=1	genotype_quality=880.8	new_cov=108/110	quality=880.8	ref_cov=0/0	tot_cov=108/110
RA	1902	.	NC_007779	2010488	0	T	G	bias_e_value=0.000128189	bias_p_value=2.75892e-11	fisher_strand_p_value=9.62322e-13	frequency=5.406094e-02	genotype_quality=649.6	ks_quality_p_value=1	log10_base_likelihood=-7.97433	log10_qual_likelihood_position_model=23.1165	log10_strand_likelihood_position_model=12.0167	new_cov=27/0	polymorphism_quality=2.5	quality=2.5	quality_position_model=Inf	ref_cov=61/133	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=88/133
RA	1903	.	NC_007779	2014008	0	T	.	bias_e_value=86839.3	bias_p_value=0.0186899	fisher_strand_p_value=0.0906771	frequency=1.441574e-02	genotype_quality=826.3	ks_quality_p_value=0.0298146	log10_base_likelihood=-8.49619	log10_qual_likelihood_position_model=1.87749	log10_strand_likelihood_position_model=1.0425	new_cov=3/0	polymorphism_quality=3.0	quality=3.0	quality_position_model=1.75074e-07	ref_cov=91/114	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=94/114
RA	1904	.	NC_007779	2023811	0	C	A	bias_e_value=32467	bias_p_value=0.00698767	fisher_strand_p_value=0.000886243	frequency=3.315544e-02	genotype_quality=774.0	ks_quality_p_value=0.979553	log10_base_likelihood=-6.05036	log10_qual_likelihood_position_model=12.3342	log10_strand_likelihood_position_model=3.16875	new_cov=11/0	polymorphism_quality=0.5	quality=0.5	quality_position_model=Inf	ref_cov=112/111	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=123/111
RA	1905	.	NC_007779	2027359	0	T	A	bias_e_value=134460	bias_p_value=0.028939	fisher_strand_p_value=0.00452266	frequency=2.550983e-02	genotype_quality=912.2	ks_quality_p_value=1	log10_base_likelihood=-6.32542	log10_qual_likelihood_position_model=11.26	log10_strand_likelihood_position_model=2.34461	new_cov=0/7	polymorphism_quality=0.8	quality=0.8	quality_position_model=Inf	ref_cov=129/107	reject=EVALUE,POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=129/114
RA	1906	.	NC_007779	2027367	0	T	C	bias_e_value=216.842	bias_p_value=4.66694e-05	fisher_strand_p_value=3.43635e-06	frequency=5.355549e-02	genotype_quality=751.5	ks_quality_p_value=1	log10_base_likelihood=-7.61834	log10_qual_likelihood_position_model=17.8265	log10_strand_likelihood_position_model=5.4639	new_cov=0/17	polymorphism_quality=2.1	quality=2.1	quality_position_model=Inf	ref_cov=116/97	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=116/114
RA	1907	.	NC_007779	2036123	1	.	T	bias_e_value=3357910	bias_p_value=0.722701	fisher_strand_p_value=0.512645	frequency=1.503754e-02	genotype_quality=646.1	ks_quality_p_value=0.692581	log10_base_likelihood=-8.43241	log10_qual_likelihood_position_model=0.996943	log10_strand_likelihood_position_model=0.372853	new_cov=1/1	polymorphism_quality=3.0	quality=3.0	quality_position_model=5.11151e-09	ref_cov=92/39	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=93/40
RA	1908	.	NC_007779	2047442	0	A	.	bias_e_value=2748890	bias_p_value=0.591626	fisher_strand_p_value=1	frequency=1.400852e-02	genotype_quality=838.0	ks_quality_p_value=0.246449	log10_base_likelihood=-8.11806	log10_qual_likelihood_position_model=2.41068	log10_strand_likelihood_position_model=0.385669	new_cov=2/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=3.2149e-07	ref_cov=116/95	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=118/96
RA	1909	.	NC_007779	2050720	0	G	T	bias_e_value=818.894	bias_p_value=0.000176245	fisher_strand_p_value=1.45265e-05	frequency=4.636955e-02	genotype_quality=794.0	ks_quality_p_value=0.999386	log10_base_likelihood=-6.04175	log10_qual_likelihood_position_model=13.875	log10_strand_likelihood_position_model=4.87576	new_cov=0/17	polymorphism_quality=0.5	quality=0.5	quality_position_model=Inf	ref_cov=114/113	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=114/130
RA	1910	.	NC_007779	2065611	0	C	A	bias_e_value=10407.4	bias_p_value=0.00223991	fisher_strand_p_value=0.000239945	frequency=4.084015e-02	genotype_quality=699.8	ks_quality_p_value=1	log10_base_likelihood=-6.26194	log10_qual_likelihood_position_model=13.817	log10_strand_likelihood_position_model=3.67995	new_cov=13/0	polymorphism_quality=0.7	quality=0.7	quality_position_model=Inf	ref_cov=103/101	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=116/101
RA	1911	.	NC_007779	2072409	1	.	C	bias_e_value=1530850	bias_p_value=0.329474	fisher_strand_p_value=0.157724	frequency=8.130074e-03	genotype_quality=1204.3	ks_quality_p_value=0.631863	log10_base_likelihood=-7.85756	log10_qual_likelihood_position_model=1.2238	log10_strand_likelihood_position_model=0.802103	new_cov=0/2	polymorphism_quality=2.4	quality=2.4	quality_position_model=9.52052e-08	ref_cov=148/96	reject=POLYMORPHISM_STRAND	tot_cov=148/98
RA	1912	.	NC_007779	2076214	0	A	C	bias_e_value=0.0388566	bias_p_value=8.36286e-09	fisher_strand_p_value=3.68038e-10	frequency=1.091480e-01	genotype_quality=399.2	ks_quality_p_value=1	log10_base_likelihood=-12.5019	log10_qual_likelihood_position_model=18.3592	log10_strand_likelihood_position_model=9.43411	new_cov=0/25	polymorphism_quality=7.1	quality=7.1	quality_position_model=Inf	ref_cov=78/44	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=78/69
RA	1913	.	NC_007779	2089543	0	A	C	bias_e_value=6.64331e-05	bias_p_value=1.4298e-11	fisher_strand_p_value=4.87151e-13	frequency=7.831907e-02	genotype_quality=742.7	ks_quality_p_value=1	log10_base_likelihood=-9.94027	log10_qual_likelihood_position_model=27.5548	log10_strand_likelihood_position_model=12.3123	new_cov=0/29	polymorphism_quality=4.5	quality=4.5	quality_position_model=Inf	ref_cov=150/76	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=150/105
RA	1914	.	NC_007779	2095582	0	G	T	bias_e_value=97.0995	bias_p_value=2.08981e-05	fisher_strand_p_value=1.44661e-06	frequency=4.379749e-02	genotype_quality=819.0	ks_quality_p_value=1	log10_base_likelihood=-6.82384	log10_qual_likelihood_position_model=15.6177	log10_strand_likelihood_position_model=5.83965	new_cov=0/17	polymorphism_quality=1.3	quality=1.3	quality_position_model=Inf	ref_cov=130/99	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=130/116
RA	1915	.	NC_007779	2098223	0	T	G	bias_e_value=8.06838e-06	bias_p_value=1.7365e-12	fisher_strand_p_value=5.50745e-14	frequency=8.919907e-02	genotype_quality=461.9	ks_quality_p_value=1	log10_base_likelihood=-7.95317	log10_qual_likelihood_position_model=26.3422	log10_strand_likelihood_position_model=13.259	new_cov=36/0	polymorphism_quality=2.5	quality=2.5	quality_position_model=Inf	ref_cov=53/94	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=89/94
RA	1916	.	NC_007779	2141731	0	A	C	bias_e_value=907.769	bias_p_value=0.000195373	fisher_strand_p_value=1.62435e-05	frequency=4.143524e-02	genotype_quality=669.4	ks_quality_p_value=1	log10_base_likelihood=-6.47144	log10_qual_likelihood_position_model=19.7972	log10_strand_likelihood_position_model=5.09035	new_cov=0/16	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=103/87	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=103/103
RA	1917	.	NC_007779	2170094	0	C	A	frequency=1	genotype_quality=945.7	new_cov=94/138	quality=945.7	ref_cov=0/0	tot_cov=94/138
RA	1918	.	NC_007779	2174678	0	C	G	bias_e_value=9.22263e-08	bias_p_value=1.98493e-14	fisher_strand_p_value=5.49264e-16	frequency=1.352668e-01	genotype_quality=627.7	ks_quality_p_value=1	log10_base_likelihood=-37.2951	log10_qual_likelihood_position_model=23.8775	log10_strand_likelihood_position_model=15.2602	new_cov=0/26	polymorphism_quality=32.1	quality=32.1	quality_position_model=Inf	ref_cov=128/32	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=128/58
RA	1919	.	NC_007779	2178210	0	A	C	bias_e_value=3003100	bias_p_value=0.646339	fisher_strand_p_value=0.378657	frequency=4.999542e-02	genotype_quality=893.1	ks_quality_p_value=0.760239	log10_base_likelihood=-39.1962	log10_qual_likelihood_position_model=7.1054	log10_strand_likelihood_position_model=0.864137	new_cov=8/4	polymorphism_quality=34.1	quality=34.1	quality_position_model=1.70298e-33	ref_cov=116/112	tot_cov=124/116
RA	1920	.	NC_007779	2199432	0	G	C	bias_e_value=1.97109e-11	bias_p_value=4.24225e-18	fisher_strand_p_value=9.46853e-20	frequency=1.659460e-01	genotype_quality=479.9	ks_quality_p_value=1	log10_base_likelihood=-59.8315	log10_qual_likelihood_position_model=22.5591	log10_strand_likelihood_position_model=19.0237	new_cov=0/25	polymorphism_quality=54.8	quality=54.8	quality_position_model=2.10746e-20	ref_cov=113/12	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=113/37
RA	1921	.	NC_007779	2211749	0	G	C	bias_e_value=221.403	bias_p_value=4.76512e-05	fisher_strand_p_value=3.51751e-06	frequency=5.100584e-02	genotype_quality=566.0	ks_quality_p_value=0.999134	log10_base_likelihood=-8.35264	log10_qual_likelihood_position_model=12.193	log10_strand_likelihood_position_model=5.4625	new_cov=9/1	polymorphism_quality=2.9	quality=2.9	quality_position_model=Inf	ref_cov=25/122	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=34/123
RA	1922	.	NC_007779	2212417	0	G	T	bias_e_value=0.00118972	bias_p_value=2.56055e-10	fisher_strand_p_value=9.71475e-12	frequency=6.498814e-02	genotype_quality=555.4	ks_quality_p_value=1	log10_base_likelihood=-15.8177	log10_qual_likelihood_position_model=13.439	log10_strand_likelihood_position_model=11.0126	new_cov=10/0	polymorphism_quality=10.5	quality=10.5	quality_position_model=Inf	ref_cov=6/129	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=16/129
RA	1923	.	NC_007779	2213136	0	G	T	bias_e_value=1.1105e-11	bias_p_value=2.39006e-18	fisher_strand_p_value=5.29536e-20	frequency=2.082586e-01	genotype_quality=417.2	ks_quality_p_value=0.994368	log10_base_likelihood=-73.3473	log10_qual_likelihood_position_model=23.1681	log10_strand_likelihood_position_model=19.2761	new_cov=30/0	polymorphism_quality=68.3	quality=68.3	quality_position_model=3.60565e-33	ref_cov=15/98	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=45/98
RA	1924	.	NC_007779	2222886	0	T	G	bias_e_value=1533.01	bias_p_value=0.00032994	fisher_strand_p_value=2.88145e-05	frequency=2.399158e-02	genotype_quality=519.4	ks_quality_p_value=0.999603	log10_base_likelihood=-7.02502	log10_qual_likelihood_position_model=5.69093	log10_strand_likelihood_position_model=4.54039	new_cov=4/0	polymorphism_quality=1.5	quality=1.5	quality_position_model=Inf	ref_cov=8/132	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=12/132
RA	1925	.	NC_007779	2226024	0	C	A	bias_e_value=132.411	bias_p_value=2.8498e-05	fisher_strand_p_value=2.01931e-06	frequency=6.079578e-02	genotype_quality=691.7	ks_quality_p_value=1	log10_base_likelihood=-7.64298	log10_qual_likelihood_position_model=14.1958	log10_strand_likelihood_position_model=5.80281	new_cov=19/0	polymorphism_quality=2.1	quality=2.1	quality_position_model=Inf	ref_cov=99/111	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=120/111
RA	1926	.	NC_007779	2226744	0	T	G	bias_e_value=0.000338478	bias_p_value=7.28483e-11	fisher_strand_p_value=2.63345e-12	frequency=1.251059e-01	genotype_quality=597.8	ks_quality_p_value=1	log10_base_likelihood=-29.847	log10_qual_likelihood_position_model=27.0682	log10_strand_likelihood_position_model=11.5795	new_cov=33/0	polymorphism_quality=24.6	quality=24.6	quality_position_model=Inf	ref_cov=77/116	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=110/116
RA	1927	.	NC_007779	2238924	1	.	G	bias_e_value=3618490	bias_p_value=0.778784	fisher_strand_p_value=0.501762	frequency=8.928299e-03	genotype_quality=1101.7	ks_quality_p_value=0.824374	log10_base_likelihood=-8.05608	log10_qual_likelihood_position_model=1.08662	log10_strand_likelihood_position_model=0.529408	new_cov=2/0	polymorphism_quality=2.6	quality=2.6	quality_position_model=2.23885e-08	ref_cov=120/102	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=122/102
RA	1928	.	NC_007779	2249963	0	T	G	bias_e_value=1.35503e-07	bias_p_value=2.91635e-14	fisher_strand_p_value=8.1594e-16	frequency=1.977544e-01	genotype_quality=433.1	ks_quality_p_value=1	log10_base_likelihood=-27.2103	log10_qual_likelihood_position_model=36.2278	log10_strand_likelihood_position_model=15.1176	new_cov=47/0	polymorphism_quality=22.0	quality=22.0	quality_position_model=Inf	ref_cov=57/87	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=104/87
RA	1929	.	NC_007779	2251498	0	C	A	bias_e_value=4331780	bias_p_value=0.932301	fisher_strand_p_value=0.79339	frequency=6.138325e-02	genotype_quality=968.0	ks_quality_p_value=0.826041	log10_base_likelihood=-38.619	log10_qual_likelihood_position_model=8.06568	log10_strand_likelihood_position_model=0.707512	new_cov=7/8	polymorphism_quality=33.5	quality=33.5	quality_position_model=4.1855e-32	ref_cov=118/111	tot_cov=125/119
RA	1930	.	NC_007779	2251499	0	C	T	bias_e_value=4483130	bias_p_value=0.964876	fisher_strand_p_value=0.79339	frequency=6.135607e-02	genotype_quality=903.1	ks_quality_p_value=0.941457	log10_base_likelihood=-35.5663	log10_qual_likelihood_position_model=7.627	log10_strand_likelihood_position_model=0.707512	new_cov=7/8	polymorphism_quality=30.4	quality=30.4	quality_position_model=1.80046e-29	ref_cov=118/111	tot_cov=125/119
RA	1931	.	NC_007779	2251503	0	T	G	bias_e_value=3568410	bias_p_value=0.768007	fisher_strand_p_value=0.797565	frequency=6.300783e-02	genotype_quality=902.6	ks_quality_p_value=0.50357	log10_base_likelihood=-54.6917	log10_qual_likelihood_position_model=4.53789	log10_strand_likelihood_position_model=0.733963	new_cov=7/9	polymorphism_quality=49.6	quality=49.6	quality_position_model=8.69801e-52	ref_cov=118/120	tot_cov=125/129
RA	1932	.	NC_007779	2251507	0	G	C	bias_e_value=2346250	bias_p_value=0.504968	fisher_strand_p_value=1	frequency=6.878138e-02	genotype_quality=961.2	ks_quality_p_value=0.189656	log10_base_likelihood=-49.9627	log10_qual_likelihood_position_model=8.13488	log10_strand_likelihood_position_model=0.709423	new_cov=8/9	polymorphism_quality=44.9	quality=44.9	quality_position_model=1.90732e-43	ref_cov=113/117	tot_cov=121/126
RA	1933	.	NC_007779	2251514	0	T	G	bias_e_value=327032	bias_p_value=0.0703849	fisher_strand_p_value=0.810339	frequency=7.828331e-02	genotype_quality=745.9	ks_quality_p_value=0.016307	log10_base_likelihood=-62.4889	log10_qual_likelihood_position_model=8.20558	log10_strand_likelihood_position_model=0.731056	new_cov=8/10	polymorphism_quality=57.5	quality=57.5	quality_position_model=6.16174e-56	ref_cov=102/110	tot_cov=110/120
RA	1934	.	NC_007779	2251515	0	G	C	bias_e_value=1767480	bias_p_value=0.380403	fisher_strand_p_value=0.811071	frequency=7.857180e-02	genotype_quality=851.8	ks_quality_p_value=0.151444	log10_base_likelihood=-55.2697	log10_qual_likelihood_position_model=8.84554	log10_strand_likelihood_position_model=0.728456	new_cov=8/10	polymorphism_quality=50.2	quality=50.2	quality_position_model=4.7909e-48	ref_cov=101/110	tot_cov=110/120
RA	1935	.	NC_007779	2251519	0	T	A	bias_e_value=4180750	bias_p_value=0.899797	fisher_strand_p_value=0.810339	frequency=7.815790e-02	genotype_quality=830.1	ks_quality_p_value=0.724583	log10_base_likelihood=-53.9008	log10_qual_likelihood_position_model=7.23473	log10_strand_likelihood_position_model=0.731056	new_cov=8/10	polymorphism_quality=48.8	quality=48.8	quality_position_model=2.75415e-48	ref_cov=102/110	tot_cov=110/120
RA	1936	.	NC_007779	2251522	0	A	G	bias_e_value=3830420	bias_p_value=0.824396	fisher_strand_p_value=1	frequency=7.020760e-02	genotype_quality=875.0	ks_quality_p_value=0.469385	log10_base_likelihood=-45.9218	log10_qual_likelihood_position_model=8.59777	log10_strand_likelihood_position_model=0.714662	new_cov=8/10	polymorphism_quality=40.8	quality=40.8	quality_position_model=6.5222e-39	ref_cov=108/130	tot_cov=116/140
RA	1937	.	NC_007779	2251525	0	C	G	bias_e_value=4645280	bias_p_value=0.999773	fisher_strand_p_value=1	frequency=7.053900e-02	genotype_quality=996.3	ks_quality_p_value=0.978784	log10_base_likelihood=-51.9595	log10_qual_likelihood_position_model=6.82229	log10_strand_likelihood_position_model=0.713399	new_cov=8/10	polymorphism_quality=46.9	quality=46.9	quality_position_model=9.08618e-47	ref_cov=106/131	tot_cov=114/141
RA	1938	.	NC_007779	2251528	0	G	C	bias_e_value=4616090	bias_p_value=0.993491	fisher_strand_p_value=1	frequency=7.112026e-02	genotype_quality=980.9	ks_quality_p_value=0.888094	log10_base_likelihood=-53.7459	log10_qual_likelihood_position_model=6.74966	log10_strand_likelihood_position_model=0.713233	new_cov=8/10	polymorphism_quality=48.7	quality=48.7	quality_position_model=1.2313e-48	ref_cov=105/130	tot_cov=113/140
RA	1939	.	NC_007779	2251531	0	A	T	bias_e_value=3525730	bias_p_value=0.75882	fisher_strand_p_value=1	frequency=7.056522e-02	genotype_quality=924.0	ks_quality_p_value=0.391695	log10_base_likelihood=-53.0812	log10_qual_likelihood_position_model=8.44869	log10_strand_likelihood_position_model=0.714616	new_cov=8/10	polymorphism_quality=48.0	quality=48.0	quality_position_model=2.92934e-46	ref_cov=103/134	tot_cov=111/144
RA	1940	.	NC_007779	2251532	0	A	G	bias_e_value=1405800	bias_p_value=0.302562	fisher_strand_p_value=1	frequency=6.878376e-02	genotype_quality=855.8	ks_quality_p_value=0.088282	log10_base_likelihood=-45.7006	log10_qual_likelihood_position_model=8.58937	log10_strand_likelihood_position_model=0.714616	new_cov=8/10	polymorphism_quality=40.6	quality=40.6	quality_position_model=1.0676e-38	ref_cov=103/134	tot_cov=111/144
RA	1941	.	NC_007779	2251537	0	G	C	bias_e_value=1009470	bias_p_value=0.217261	fisher_strand_p_value=1	frequency=6.858158e-02	genotype_quality=1014.7	ks_quality_p_value=0.0559468	log10_base_likelihood=-53.048	log10_qual_likelihood_position_model=7.42961	log10_strand_likelihood_position_model=0.716536	new_cov=8/10	polymorphism_quality=48.0	quality=48.0	quality_position_model=3.00632e-47	ref_cov=105/139	tot_cov=113/149
RA	1942	.	NC_007779	2251539	0	T	C	bias_e_value=1687830	bias_p_value=0.363262	fisher_strand_p_value=1	frequency=6.769562e-02	genotype_quality=897.7	ks_quality_p_value=0.114786	log10_base_likelihood=-43.9711	log10_qual_likelihood_position_model=9.90782	log10_strand_likelihood_position_model=0.720889	new_cov=8/10	polymorphism_quality=38.9	quality=38.9	quality_position_model=1.26307e-35	ref_cov=103/141	tot_cov=111/151
RA	1943	.	NC_007779	2251543	0	C	A	bias_e_value=2420860	bias_p_value=0.521026	fisher_strand_p_value=0.805117	frequency=6.842661e-02	genotype_quality=976.6	ks_quality_p_value=0.247747	log10_base_likelihood=-45.1255	log10_qual_likelihood_position_model=10.93	log10_strand_likelihood_position_model=0.74064	new_cov=8/10	polymorphism_quality=40.0	quality=40.0	quality_position_model=9.73243e-36	ref_cov=98/146	tot_cov=106/156
RA	1944	.	NC_007779	2251545	0	C	T	bias_e_value=4122020	bias_p_value=0.887157	fisher_strand_p_value=0.805353	frequency=6.795788e-02	genotype_quality=945.8	ks_quality_p_value=0.700646	log10_base_likelihood=-40.0466	log10_qual_likelihood_position_model=10.7142	log10_strand_likelihood_position_model=0.739768	new_cov=8/10	polymorphism_quality=34.9	quality=34.9	quality_position_model=7.65844e-31	ref_cov=99/147	tot_cov=107/157
RA	1945	.	NC_007779	2251555	0	G	A	bias_e_value=461855	bias_p_value=0.099402	fisher_strand_p_value=0.803357	frequency=6.768084e-02	genotype_quality=939.1	ks_quality_p_value=0.0252658	log10_base_likelihood=-42.0766	log10_qual_likelihood_position_model=9.59641	log10_strand_likelihood_position_model=0.75601	new_cov=8/10	polymorphism_quality=37.0	quality=37.0	quality_position_model=5.37407e-34	ref_cov=95/148	tot_cov=103/158
RA	1946	.	NC_007779	2251556	0	T	A	bias_e_value=1400690	bias_p_value=0.301461	fisher_strand_p_value=0.803495	frequency=6.838894e-02	genotype_quality=951.9	ks_quality_p_value=0.109308	log10_base_likelihood=-50.3996	log10_qual_likelihood_position_model=9.95144	log10_strand_likelihood_position_model=0.754739	new_cov=8/10	polymorphism_quality=45.3	quality=45.3	quality_position_model=5.16388e-42	ref_cov=96/149	tot_cov=104/159
RA	1947	.	NC_007779	2251575	0	G	T	bias_e_value=4204950	bias_p_value=0.905004	fisher_strand_p_value=0.614264	frequency=8.080912e-02	genotype_quality=859.4	ks_quality_p_value=0.972049	log10_base_likelihood=-45.6125	log10_qual_likelihood_position_model=8.36471	log10_strand_likelihood_position_model=0.791155	new_cov=8/10	polymorphism_quality=40.5	quality=40.5	quality_position_model=9.29033e-39	ref_cov=76/129	tot_cov=85/139
RA	1948	.	NC_007779	2251576	0	C	G	bias_e_value=3964960	bias_p_value=0.853353	fisher_strand_p_value=0.612941	frequency=8.196831e-02	genotype_quality=830.4	ks_quality_p_value=0.831926	log10_base_likelihood=-55.1217	log10_qual_likelihood_position_model=7.22298	log10_strand_likelihood_position_model=0.796491	new_cov=8/10	polymorphism_quality=50.1	quality=50.1	quality_position_model=1.85087e-49	ref_cov=74/127	reject=SURROUNDING_HOMOPOLYMER	tot_cov=83/137
RA	1949	.	NC_007779	2251579	0	G	A	bias_e_value=4131120	bias_p_value=0.889114	fisher_strand_p_value=0.621249	frequency=7.205439e-02	genotype_quality=894.0	ks_quality_p_value=0.913815	log10_base_likelihood=-42.7878	log10_qual_likelihood_position_model=7.79628	log10_strand_likelihood_position_model=0.772675	new_cov=8/10	polymorphism_quality=37.7	quality=37.7	quality_position_model=1.65732e-36	ref_cov=88/143	tot_cov=97/153
RA	1950	.	NC_007779	2251585	0	A	G	bias_e_value=4646210	bias_p_value=0.999974	fisher_strand_p_value=1	frequency=5.272102e-02	genotype_quality=888.4	ks_quality_p_value=0.992769	log10_base_likelihood=-30.3772	log10_qual_likelihood_position_model=8.57081	log10_strand_likelihood_position_model=0.640401	new_cov=5/8	polymorphism_quality=25.2	quality=25.2	quality_position_model=2.37106e-23	ref_cov=90/143	tot_cov=95/151
RA	1951	.	NC_007779	2251589	0	C	G	bias_e_value=4646090	bias_p_value=0.999948	fisher_strand_p_value=1	frequency=1.218796e-02	genotype_quality=994.9	ks_quality_p_value=0.989848	log10_base_likelihood=-5.81319	log10_qual_likelihood_position_model=2.85596	log10_strand_likelihood_position_model=0.358519	new_cov=1/2	polymorphism_quality=0.3	quality=0.3	quality_position_model=0.000235172	ref_cov=94/147	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=95/149
RA	1952	.	NC_007779	2262756	0	A	C	bias_e_value=3346050	bias_p_value=0.720149	fisher_strand_p_value=0.352592	frequency=1.722145e-02	genotype_quality=806.7	ks_quality_p_value=1	log10_base_likelihood=-9.01344	log10_qual_likelihood_position_model=3.49911	log10_strand_likelihood_position_model=0.638039	new_cov=1/3	polymorphism_quality=3.6	quality=3.6	quality_position_model=9.33715e-07	ref_cov=105/95	reject=POLYMORPHISM_STRAND	tot_cov=106/99
RA	1953	.	NC_007779	2264339	0	A	C	bias_e_value=0.0557797	bias_p_value=1.20051e-08	fisher_strand_p_value=5.37273e-10	frequency=7.880592e-02	genotype_quality=670.5	ks_quality_p_value=1	log10_base_likelihood=-12.9858	log10_qual_likelihood_position_model=24.3942	log10_strand_likelihood_position_model=9.26981	new_cov=0/24	polymorphism_quality=7.6	quality=7.6	quality_position_model=Inf	ref_cov=122/73	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=122/97
RA	1954	.	NC_007779	2271592	0	G	T	bias_e_value=9308.38	bias_p_value=0.00200338	fisher_strand_p_value=0.000211774	frequency=3.621769e-02	genotype_quality=856.7	ks_quality_p_value=1	log10_base_likelihood=-5.5686	log10_qual_likelihood_position_model=11.8874	log10_strand_likelihood_position_model=3.77129	new_cov=0/13	polymorphism_quality=0.0	quality=0.0	quality_position_model=Inf	ref_cov=113/112	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=113/125
RA	1955	.	NC_007779	2278635	0	C	A	bias_e_value=66.567	bias_p_value=1.43268e-05	fisher_strand_p_value=9.65395e-07	frequency=6.180477e-02	genotype_quality=765.1	ks_quality_p_value=0.999249	log10_base_likelihood=-10.349	log10_qual_likelihood_position_model=16.0837	log10_strand_likelihood_position_model=6.12325	new_cov=20/0	polymorphism_quality=4.9	quality=4.9	quality_position_model=Inf	ref_cov=104/117	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=124/117
RA	1956	.	NC_007779	2278884	0	T	G	bias_e_value=0.0041807	bias_p_value=8.99784e-10	fisher_strand_p_value=3.59199e-11	frequency=5.461216e-02	genotype_quality=739.1	ks_quality_p_value=1	log10_base_likelihood=-9.81163	log10_qual_likelihood_position_model=27.4265	log10_strand_likelihood_position_model=10.4447	new_cov=24/0	polymorphism_quality=4.4	quality=4.4	quality_position_model=Inf	ref_cov=72/145	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=96/145
RA	1957	.	NC_007779	2285283	0	G	A	bias_e_value=4384.6	bias_p_value=0.00094367	fisher_strand_p_value=9.16393e-05	frequency=5.583525e-02	genotype_quality=567.2	ks_quality_p_value=1	log10_base_likelihood=-8.11078	log10_qual_likelihood_position_model=10.7118	log10_strand_likelihood_position_model=4.05427	new_cov=1/10	polymorphism_quality=2.6	quality=2.6	quality_position_model=Inf	ref_cov=108/46	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=109/56
RA	1958	.	NC_007779	2287114	0	C	A	bias_e_value=15.3179	bias_p_value=3.29677e-06	fisher_strand_p_value=2.28702e-07	frequency=7.527590e-02	genotype_quality=732.1	ks_quality_p_value=0.87784	log10_base_likelihood=-16.665	log10_qual_likelihood_position_model=21.8519	log10_strand_likelihood_position_model=6.64073	new_cov=0/20	polymorphism_quality=11.3	quality=11.3	quality_position_model=Inf	ref_cov=122/96	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=122/116
RA	1959	.	NC_007779	2290583	0	A	C	bias_e_value=0.210239	bias_p_value=4.52484e-08	fisher_strand_p_value=2.15948e-09	frequency=8.648348e-02	genotype_quality=542.5	ks_quality_p_value=1	log10_base_likelihood=-11.2459	log10_qual_likelihood_position_model=21.7747	log10_strand_likelihood_position_model=8.66565	new_cov=0/23	polymorphism_quality=5.8	quality=5.8	quality_position_model=Inf	ref_cov=103/63	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=103/86
RA	1960	.	NC_007779	2307309	0	T	C	bias_e_value=0.00196414	bias_p_value=4.2273e-10	fisher_strand_p_value=1.6362e-11	frequency=9.291029e-02	genotype_quality=463.3	ks_quality_p_value=1	log10_base_likelihood=-17.6989	log10_qual_likelihood_position_model=15.3433	log10_strand_likelihood_position_model=10.7862	new_cov=0/14	polymorphism_quality=12.4	quality=12.4	quality_position_model=Inf	ref_cov=113/16	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=113/30
RA	1961	.	NC_007779	2331120	0	T	G	bias_e_value=4.75887e-15	bias_p_value=1.02422e-21	fisher_strand_p_value=1.92138e-23	frequency=1.853762e-01	genotype_quality=438.4	ks_quality_p_value=1	log10_base_likelihood=-31.6882	log10_qual_likelihood_position_model=33.9218	log10_strand_likelihood_position_model=22.7164	new_cov=48/0	polymorphism_quality=26.5	quality=26.5	quality_position_model=Inf	ref_cov=35/113	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=83/113
RA	1962	.	NC_007779	2332580	0	A	C	bias_e_value=4.22283e-14	bias_p_value=9.08853e-21	fisher_strand_p_value=1.77925e-22	frequency=1.727042e-01	genotype_quality=418.5	ks_quality_p_value=1	log10_base_likelihood=-16.7805	log10_qual_likelihood_position_model=29.2373	log10_strand_likelihood_position_model=21.7498	new_cov=0/50	polymorphism_quality=11.5	quality=11.5	quality_position_model=Inf	ref_cov=100/35	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=100/85
RA	1963	.	NC_007779	2337256	0	G	C	bias_e_value=29.7677	bias_p_value=6.40671e-06	fisher_strand_p_value=4.07743e-07	frequency=5.815315e-02	genotype_quality=443.8	ks_quality_p_value=1	log10_base_likelihood=-5.99383	log10_qual_likelihood_position_model=10.2924	log10_strand_likelihood_position_model=6.38961	new_cov=8/0	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=14/97	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=23/97
RA	1964	.	NC_007779	2342393	0	A	C	bias_e_value=0.000961508	bias_p_value=2.06939e-10	fisher_strand_p_value=7.7859e-12	frequency=1.028833e-01	genotype_quality=478.4	ks_quality_p_value=1	log10_base_likelihood=-10.4896	log10_qual_likelihood_position_model=24.8004	log10_strand_likelihood_position_model=11.1087	new_cov=0/27	polymorphism_quality=5.1	quality=5.1	quality_position_model=Inf	ref_cov=100/50	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=100/77
RA	1965	.	NC_007779	2347976	0	A	C	bias_e_value=7.69461e-10	bias_p_value=1.65606e-16	fisher_strand_p_value=4.03408e-18	frequency=8.607054e-02	genotype_quality=615.8	ks_quality_p_value=1	log10_base_likelihood=-12.3626	log10_qual_likelihood_position_model=25.4254	log10_strand_likelihood_position_model=17.3943	new_cov=0/33	polymorphism_quality=7.0	quality=7.0	quality_position_model=Inf	ref_cov=142/44	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=142/77
RA	1966	.	NC_007779	2348480	0	G	T	bias_e_value=113.774	bias_p_value=2.44869e-05	fisher_strand_p_value=1.71526e-06	frequency=4.449463e-02	genotype_quality=644.0	ks_quality_p_value=1	log10_base_likelihood=-6.22352	log10_qual_likelihood_position_model=13.42	log10_strand_likelihood_position_model=5.76567	new_cov=0/12	polymorphism_quality=0.7	quality=0.7	quality_position_model=Inf	ref_cov=112/49	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=112/61
RA	1967	.	NC_007779	2348491	0	C	A	bias_e_value=498.684	bias_p_value=0.000107329	fisher_strand_p_value=8.46466e-06	frequency=5.528355e-02	genotype_quality=607.2	ks_quality_p_value=1	log10_base_likelihood=-7.26868	log10_qual_likelihood_position_model=9.08267	log10_strand_likelihood_position_model=5.07239	new_cov=0/12	polymorphism_quality=1.8	quality=1.8	quality_position_model=Inf	ref_cov=106/58	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=106/70
RA	1968	.	NC_007779	2353815	0	A	C	bias_e_value=0.100552	bias_p_value=2.16411e-08	fisher_strand_p_value=9.96035e-10	frequency=5.040741e-02	genotype_quality=443.5	ks_quality_p_value=1	log10_base_likelihood=-6.42444	log10_qual_likelihood_position_model=14.5716	log10_strand_likelihood_position_model=9.00173	new_cov=0/11	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=110/14	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=110/25
RA	1969	.	NC_007779	2354291	0	A	C	bias_e_value=2.64532e-13	bias_p_value=5.69335e-20	fisher_strand_p_value=1.15699e-21	frequency=1.923571e-01	genotype_quality=503.7	ks_quality_p_value=1	log10_base_likelihood=-39.7306	log10_qual_likelihood_position_model=35.9336	log10_strand_likelihood_position_model=20.9367	new_cov=0/48	polymorphism_quality=34.6	quality=34.6	quality_position_model=Inf	ref_cov=124/49	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=124/97
RA	1970	.	NC_007779	2373239	0	A	C	bias_e_value=2.92911e-06	bias_p_value=6.30413e-13	fisher_strand_p_value=1.93521e-14	frequency=5.658388e-02	genotype_quality=484.8	ks_quality_p_value=1	log10_base_likelihood=-6.43554	log10_qual_likelihood_position_model=20.5805	log10_strand_likelihood_position_model=13.7133	new_cov=0/17	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=121/14	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=121/31
RA	1971	.	NC_007779	2374921	0	T	G	bias_e_value=62.3032	bias_p_value=1.34091e-05	fisher_strand_p_value=8.99346e-07	frequency=4.832268e-02	genotype_quality=525.1	ks_quality_p_value=0.999156	log10_base_likelihood=-8.0387	log10_qual_likelihood_position_model=13.8974	log10_strand_likelihood_position_model=6.04607	new_cov=10/0	polymorphism_quality=2.6	quality=2.6	quality_position_model=Inf	ref_cov=33/116	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=43/116
RA	1972	.	NC_007779	2381946	0	A	C	bias_e_value=385.795	bias_p_value=8.30321e-05	fisher_strand_p_value=6.40779e-06	frequency=3.232098e-02	genotype_quality=584.1	ks_quality_p_value=1	log10_base_likelihood=-5.69222	log10_qual_likelihood_position_model=12.8395	log10_strand_likelihood_position_model=5.19329	new_cov=0/12	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=110/58	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=110/70
RA	1973	.	NC_007779	2406075	0	C	T	frequency=1	genotype_quality=841.6	new_cov=118/97	quality=841.6	ref_cov=0/0	tot_cov=118/97
RA	1974	.	NC_007779	2409396	0	T	A	bias_e_value=150332	bias_p_value=0.0323549	fisher_strand_p_value=0.00650271	frequency=2.791500e-02	genotype_quality=681.0	ks_quality_p_value=0.794044	log10_base_likelihood=-5.75918	log10_qual_likelihood_position_model=9.29988	log10_strand_likelihood_position_model=2.18691	new_cov=0/6	polymorphism_quality=0.2	quality=0.2	quality_position_model=Inf	ref_cov=115/84	reject=EVALUE,POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=115/90
RA	1975	.	NC_007779	2409404	0	A	C	bias_e_value=7.3069e-06	bias_p_value=1.57262e-12	fisher_strand_p_value=4.97152e-14	frequency=1.293674e-01	genotype_quality=563.5	ks_quality_p_value=1	log10_base_likelihood=-20.7391	log10_qual_likelihood_position_model=27.9654	log10_strand_likelihood_position_model=13.3035	new_cov=0/33	polymorphism_quality=15.5	quality=15.5	quality_position_model=Inf	ref_cov=115/59	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=115/92
RA	1976	.	NC_007779	2410289	0	T	A	bias_e_value=120.293	bias_p_value=2.589e-05	fisher_strand_p_value=1.82118e-06	frequency=6.939507e-02	genotype_quality=759.4	ks_quality_p_value=1	log10_base_likelihood=-14.208	log10_qual_likelihood_position_model=23.1143	log10_strand_likelihood_position_model=5.73965	new_cov=0/16	polymorphism_quality=8.8	quality=8.8	quality_position_model=Inf	ref_cov=116/82	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=116/98
RA	1977	.	NC_007779	2410289	1	.	A	bias_e_value=1313130	bias_p_value=0.282616	fisher_strand_p_value=0.501142	frequency=1.004982e-02	genotype_quality=941.2	ks_quality_p_value=0.160076	log10_base_likelihood=-8.14453	log10_qual_likelihood_position_model=1.29449	log10_strand_likelihood_position_model=0.532711	new_cov=2/0	polymorphism_quality=2.7	quality=2.7	quality_position_model=2.99697e-08	ref_cov=106/91	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=108/91
RA	1978	.	NC_007779	2410316	0	A	C	bias_e_value=1.5783e-13	bias_p_value=3.39687e-20	fisher_strand_p_value=6.82986e-22	frequency=1.851945e-01	genotype_quality=462.0	ks_quality_p_value=1	log10_base_likelihood=-45.7567	log10_qual_likelihood_position_model=32.8408	log10_strand_likelihood_position_model=21.1656	new_cov=0/46	polymorphism_quality=40.7	quality=40.7	quality_position_model=Inf	ref_cov=118/41	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=118/88
RA	1979	.	NC_007779	2410690	0	T	A	bias_e_value=928487	bias_p_value=0.199832	fisher_strand_p_value=0.114953	frequency=1.365662e-02	genotype_quality=863.8	ks_quality_p_value=0.435095	log10_base_likelihood=-6.20948	log10_qual_likelihood_position_model=2.4213	log10_strand_likelihood_position_model=0.939481	new_cov=0/3	polymorphism_quality=0.7	quality=0.7	quality_position_model=0.000126987	ref_cov=112/104	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=112/107
RA	1980	.	NC_007779	2416102	0	G	A	frequency=1	genotype_quality=851.2	new_cov=105/109	quality=851.2	ref_cov=0/0	tot_cov=105/109
RA	1981	.	NC_007779	2417605	0	C	A	bias_e_value=1.11299	bias_p_value=2.39541e-07	fisher_strand_p_value=1.5546e-08	frequency=8.035994e-02	genotype_quality=733.0	ks_quality_p_value=0.802552	log10_base_likelihood=-14.0952	log10_qual_likelihood_position_model=27.0234	log10_strand_likelihood_position_model=7.98335	new_cov=25/0	polymorphism_quality=8.7	quality=8.7	quality_position_model=Inf	ref_cov=96/118	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=122/118
RA	1982	.	NC_007779	2420902	0	G	C	bias_e_value=3.51599	bias_p_value=7.56725e-07	fisher_strand_p_value=4.48105e-08	frequency=5.721474e-02	genotype_quality=764.4	ks_quality_p_value=0.939027	log10_base_likelihood=-13.0787	log10_qual_likelihood_position_model=20.5417	log10_strand_likelihood_position_model=7.34862	new_cov=15/0	polymorphism_quality=7.7	quality=7.7	quality_position_model=Inf	ref_cov=63/148	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=78/148
RA	1983	.	NC_007779	2420905	0	A	C	bias_e_value=417.908	bias_p_value=8.99436e-05	fisher_strand_p_value=6.9879e-06	frequency=3.269005e-02	genotype_quality=729.2	ks_quality_p_value=1	log10_base_likelihood=-6.38698	log10_qual_likelihood_position_model=13.0517	log10_strand_likelihood_position_model=5.15565	new_cov=10/0	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=60/149	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=70/149
RA	1984	.	NC_007779	2446437	0	A	C	bias_e_value=0.0110423	bias_p_value=2.37656e-09	fisher_strand_p_value=9.88702e-11	frequency=9.663582e-02	genotype_quality=536.6	ks_quality_p_value=1	log10_base_likelihood=-10.7433	log10_qual_likelihood_position_model=23.7847	log10_strand_likelihood_position_model=10.0049	new_cov=0/26	polymorphism_quality=5.3	quality=5.3	quality_position_model=Inf	ref_cov=104/60	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=104/86
RA	1985	.	NC_007779	2453267	0	T	G	bias_e_value=2.60189	bias_p_value=5.59988e-07	fisher_strand_p_value=3.05964e-08	frequency=3.173637e-02	genotype_quality=585.2	ks_quality_p_value=1	log10_base_likelihood=-7.64587	log10_qual_likelihood_position_model=16.6557	log10_strand_likelihood_position_model=7.51433	new_cov=15/0	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=48/121	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=63/121
RA	1986	.	NC_007779	2458860	0	T	G	bias_e_value=102.63	bias_p_value=2.20883e-05	fisher_strand_p_value=1.53532e-06	frequency=2.854633e-02	genotype_quality=505.5	ks_quality_p_value=1	log10_base_likelihood=-8.47044	log10_qual_likelihood_position_model=4.71953	log10_strand_likelihood_position_model=5.8138	new_cov=5/0	polymorphism_quality=3.0	quality=3.0	quality_position_model=Inf	ref_cov=7/134	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=12/134
RA	1987	.	NC_007779	2465361	0	G	C	bias_e_value=78883.4	bias_p_value=0.0169776	fisher_strand_p_value=0.0024166	frequency=2.669907e-02	genotype_quality=601.1	ks_quality_p_value=1	log10_base_likelihood=-6.41884	log10_qual_likelihood_position_model=5.32885	log10_strand_likelihood_position_model=2.6168	new_cov=0/4	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=114/30	reject=EVALUE,POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=114/34
RA	1988	.	NC_007779	2465366	0	T	C	bias_e_value=0.031602	bias_p_value=6.8015e-09	fisher_strand_p_value=2.96504e-10	frequency=7.904148e-02	genotype_quality=535.3	ks_quality_p_value=1	log10_base_likelihood=-7.65094	log10_qual_likelihood_position_model=19.0037	log10_strand_likelihood_position_model=9.52797	new_cov=0/15	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=115/27	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=115/42
RA	1989	.	NC_007779	2465370	0	C	A	bias_e_value=2.60981e-11	bias_p_value=5.61693e-18	fisher_strand_p_value=1.2654e-19	frequency=1.731844e-01	genotype_quality=494.1	ks_quality_p_value=0.997124	log10_base_likelihood=-54.1987	log10_qual_likelihood_position_model=25.7229	log10_strand_likelihood_position_model=18.8978	new_cov=0/26	polymorphism_quality=49.1	quality=49.1	quality_position_model=1.34919e-11	ref_cov=109/13	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=109/39
RA	1990	.	NC_007779	2466047	0	G	A	bias_e_value=3577.52	bias_p_value=0.000769966	fisher_strand_p_value=7.31719e-05	frequency=4.790878e-02	genotype_quality=764.1	ks_quality_p_value=1	log10_base_likelihood=-7.1441	log10_qual_likelihood_position_model=16.9209	log10_strand_likelihood_position_model=4.13566	new_cov=0/13	polymorphism_quality=1.6	quality=1.6	quality_position_model=Inf	ref_cov=109/94	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=109/107
RA	1991	.	NC_007779	2468326	1	.	C	bias_e_value=1553090	bias_p_value=0.334262	fisher_strand_p_value=0.570843	frequency=1.554203e-02	genotype_quality=894.7	ks_quality_p_value=0.178237	log10_base_likelihood=-11.4737	log10_qual_likelihood_position_model=2.60561	log10_strand_likelihood_position_model=0.518975	new_cov=2/1	polymorphism_quality=6.1	quality=6.1	quality_position_model=2.44079e-10	ref_cov=78/112	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=80/113
RA	1992	.	NC_007779	2468327	0	C	.	bias_e_value=3563030	bias_p_value=0.766847	fisher_strand_p_value=0.403668	frequency=3.090858e-02	genotype_quality=782.4	ks_quality_p_value=0.991808	log10_base_likelihood=-17.9024	log10_qual_likelihood_position_model=3.02943	log10_strand_likelihood_position_model=0.779834	new_cov=1/5	polymorphism_quality=12.6	quality=12.6	quality_position_model=3.41991e-16	ref_cov=80/108	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=81/113
RA	1993	.	NC_007779	2517218	0	A	C	bias_e_value=1.58021e-05	bias_p_value=3.40097e-12	fisher_strand_p_value=1.10294e-13	frequency=7.679939e-02	genotype_quality=474.7	ks_quality_p_value=1	log10_base_likelihood=-8.26409	log10_qual_likelihood_position_model=26.1767	log10_strand_likelihood_position_model=12.9574	new_cov=0/22	polymorphism_quality=2.8	quality=2.8	quality_position_model=Inf	ref_cov=109/27	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=109/49
RA	1994	.	NC_007779	2519319	0	T	G	bias_e_value=1.22297	bias_p_value=2.63212e-07	fisher_strand_p_value=1.37807e-08	frequency=7.866669e-02	genotype_quality=640.4	ks_quality_p_value=1	log10_base_likelihood=-7.39267	log10_qual_likelihood_position_model=22.2638	log10_strand_likelihood_position_model=7.87713	new_cov=26/0	polymorphism_quality=1.9	quality=1.9	quality_position_model=Inf	ref_cov=89/103	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=115/103
RA	1995	.	NC_007779	2536601	0	T	G	bias_e_value=7.91942e-09	bias_p_value=1.70445e-15	fisher_strand_p_value=4.40877e-17	frequency=1.848645e-01	genotype_quality=423.5	ks_quality_p_value=1	log10_base_likelihood=-31.6848	log10_qual_likelihood_position_model=27.6629	log10_strand_likelihood_position_model=16.3557	new_cov=36/0	polymorphism_quality=26.5	quality=26.5	quality_position_model=Inf	ref_cov=37/100	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=73/100
RA	1996	.	NC_007779	2538628	0	C	T	frequency=1	genotype_quality=948.8	new_cov=106/133	quality=948.8	ref_cov=0/0	tot_cov=106/133
RA	1997	.	NC_007779	2556426	0	G	T	bias_e_value=1.43809	bias_p_value=3.09512e-07	fisher_strand_p_value=1.98953e-08	frequency=8.620405e-02	genotype_quality=638.1	ks_quality_p_value=0.821864	log10_base_likelihood=-16.3686	log10_qual_likelihood_position_model=21.8318	log10_strand_likelihood_position_model=7.70125	new_cov=0/22	polymorphism_quality=11.0	quality=11.0	quality_position_model=Inf	ref_cov=108/76	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=108/98
RA	1998	.	NC_007779	2568527	0	T	C	bias_e_value=1023060	bias_p_value=0.220186	fisher_strand_p_value=0.0571414	frequency=1.937294e-02	genotype_quality=792.5	ks_quality_p_value=0.996898	log10_base_likelihood=-6.55727	log10_qual_likelihood_position_model=4.56176	log10_strand_likelihood_position_model=1.24305	new_cov=0/4	polymorphism_quality=1.0	quality=1.0	quality_position_model=0.028109	ref_cov=104/97	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=106/101
RA	1999	.	NC_007779	2581900	0	G	T	bias_e_value=11380.6	bias_p_value=0.00244938	fisher_strand_p_value=0.000265231	frequency=4.332256e-02	genotype_quality=684.4	ks_quality_p_value=1	log10_base_likelihood=-6.43975	log10_qual_likelihood_position_model=12.1326	log10_strand_likelihood_position_model=3.62074	new_cov=0/13	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=97/101	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=97/115
RA	2000	.	NC_007779	2595934	0	T	G	bias_e_value=248.665	bias_p_value=5.35186e-05	fisher_strand_p_value=3.98405e-06	frequency=3.417110e-02	genotype_quality=422.1	ks_quality_p_value=1	log10_base_likelihood=-10.1199	log10_qual_likelihood_position_model=7.39531	log10_strand_likelihood_position_model=5.39968	new_cov=5/0	polymorphism_quality=4.7	quality=4.7	quality_position_model=Inf	ref_cov=7/109	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=12/109
RA	2001	.	NC_007779	2598509	1	.	T	bias_e_value=1655230	bias_p_value=0.356245	fisher_strand_p_value=0.199711	frequency=7.999420e-03	genotype_quality=1223.7	ks_quality_p_value=0.558636	log10_base_likelihood=-8.16975	log10_qual_likelihood_position_model=1.44779	log10_strand_likelihood_position_model=0.699598	new_cov=2/0	polymorphism_quality=2.7	quality=2.7	quality_position_model=6.0451e-08	ref_cov=110/138	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=112/138
RA	2002	.	NC_007779	2600440	0	A	G	bias_e_value=0.00320657	bias_p_value=6.90129e-10	fisher_strand_p_value=2.72499e-11	frequency=9.056664e-02	genotype_quality=602.5	ks_quality_p_value=1	log10_base_likelihood=-9.88444	log10_qual_likelihood_position_model=17.8939	log10_strand_likelihood_position_model=10.5646	new_cov=25/0	polymorphism_quality=4.4	quality=4.4	quality_position_model=Inf	ref_cov=61/121	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=86/122
RA	2003	.	NC_007779	2601998	0	A	C	bias_e_value=0.072418	bias_p_value=1.55861e-08	fisher_strand_p_value=7.06173e-10	frequency=5.892944e-02	genotype_quality=485.5	ks_quality_p_value=1	log10_base_likelihood=-10.2355	log10_qual_likelihood_position_model=14.7168	log10_strand_likelihood_position_model=9.15109	new_cov=0/11	polymorphism_quality=4.8	quality=4.8	quality_position_model=Inf	ref_cov=120/15	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=120/26
RA	2004	.	NC_007779	2602394	0	G	T	bias_e_value=5348.77	bias_p_value=0.00115118	fisher_strand_p_value=0.000114288	frequency=3.374863e-02	genotype_quality=761.9	ks_quality_p_value=0.999539	log10_base_likelihood=-5.66465	log10_qual_likelihood_position_model=10.7876	log10_strand_likelihood_position_model=3.942	new_cov=0/11	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=123/90	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=123/101
RA	2005	.	NC_007779	2604001	0	T	G	bias_e_value=0.000473844	bias_p_value=1.01982e-10	fisher_strand_p_value=3.73376e-12	frequency=8.468199e-02	genotype_quality=427.7	ks_quality_p_value=1	log10_base_likelihood=-5.64108	log10_qual_likelihood_position_model=18.3514	log10_strand_likelihood_position_model=11.4279	new_cov=21/0	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=28/96	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=49/96
RA	2006	.	NC_007779	2623159	0	T	G	bias_e_value=3.68586e-12	bias_p_value=7.93283e-19	fisher_strand_p_value=1.70533e-20	frequency=2.048898e-01	genotype_quality=362.8	ks_quality_p_value=1	log10_base_likelihood=-31.9488	log10_qual_likelihood_position_model=32.865	log10_strand_likelihood_position_model=19.7682	new_cov=43/0	polymorphism_quality=26.8	quality=26.8	quality_position_model=Inf	ref_cov=29/92	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=73/92
RA	2007	.	NC_007779	2623173	0	G	T	bias_e_value=35.6229	bias_p_value=7.66688e-06	fisher_strand_p_value=4.93975e-07	frequency=9.648418e-02	genotype_quality=523.7	ks_quality_p_value=1	log10_base_likelihood=-12.1449	log10_qual_likelihood_position_model=15.1954	log10_strand_likelihood_position_model=6.30629	new_cov=17/0	polymorphism_quality=6.8	quality=6.8	quality_position_model=Inf	ref_cov=55/86	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=72/86
RA	2008	.	NC_007779	2640922	0	T	G	bias_e_value=0.000669202	bias_p_value=1.44028e-10	fisher_strand_p_value=5.34324e-12	frequency=7.649136e-02	genotype_quality=564.0	ks_quality_p_value=1	log10_base_likelihood=-8.84235	log10_qual_likelihood_position_model=32.837	log10_strand_likelihood_position_model=11.2722	new_cov=32/0	polymorphism_quality=3.4	quality=3.4	quality_position_model=Inf	ref_cov=69/106	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=101/106
RA	2009	.	NC_007779	2641345	0	T	G	bias_e_value=3.05598	bias_p_value=6.57719e-07	fisher_strand_p_value=3.62736e-08	frequency=5.291843e-02	genotype_quality=448.6	ks_quality_p_value=1	log10_base_likelihood=-11.7526	log10_qual_likelihood_position_model=10.6376	log10_strand_likelihood_position_model=7.44041	new_cov=8/0	polymorphism_quality=6.4	quality=6.4	quality_position_model=Inf	ref_cov=11/115	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=19/115
RA	2010	.	NC_007779	2646804	0	A	C	bias_e_value=4.63977e-05	bias_p_value=9.98587e-12	fisher_strand_p_value=3.35979e-13	frequency=8.918715e-02	genotype_quality=569.2	ks_quality_p_value=1	log10_base_likelihood=-10.5326	log10_qual_likelihood_position_model=27.3686	log10_strand_likelihood_position_model=12.4737	new_cov=0/29	polymorphism_quality=5.1	quality=5.1	quality_position_model=Inf	ref_cov=119/56	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=119/85
RA	2011	.	NC_007779	2648595	0	A	C	bias_e_value=1.64462e-06	bias_p_value=3.53961e-13	fisher_strand_p_value=1.06707e-14	frequency=8.341169e-02	genotype_quality=466.1	ks_quality_p_value=1	log10_base_likelihood=-12.9866	log10_qual_likelihood_position_model=18.0831	log10_strand_likelihood_position_model=13.9718	new_cov=0/14	polymorphism_quality=7.6	quality=7.6	quality_position_model=Inf	ref_cov=124/7	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=124/21
RA	2012	.	NC_007779	2672817	0	A	C	bias_e_value=6.00931e-10	bias_p_value=1.29334e-16	fisher_strand_p_value=3.1312e-18	frequency=1.694112e-01	genotype_quality=367.3	ks_quality_p_value=1	log10_base_likelihood=-26.1196	log10_qual_likelihood_position_model=27.9593	log10_strand_likelihood_position_model=17.5043	new_cov=0/35	polymorphism_quality=20.9	quality=20.9	quality_position_model=Inf	ref_cov=94/27	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=94/62
RA	2013	.	NC_007779	2700681	0	T	G	bias_e_value=0.320473	bias_p_value=6.89733e-08	fisher_strand_p_value=3.36283e-09	frequency=7.168293e-02	genotype_quality=634.2	ks_quality_p_value=1	log10_base_likelihood=-5.97284	log10_qual_likelihood_position_model=23.229	log10_strand_likelihood_position_model=8.54979	new_cov=27/0	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=88/109	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=116/109
RA	2014	.	NC_007779	2704581	0	G	C	bias_e_value=6.34171	bias_p_value=1.36488e-06	fisher_strand_p_value=7.8688e-08	frequency=4.790306e-02	genotype_quality=645.1	ks_quality_p_value=0.999252	log10_base_likelihood=-5.98251	log10_qual_likelihood_position_model=13.5205	log10_strand_likelihood_position_model=7.10409	new_cov=11/0	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=33/133	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=44/133
RA	2015	.	NC_007779	2704719	0	A	T	bias_e_value=1274660	bias_p_value=0.274337	fisher_strand_p_value=0.0824105	frequency=1.377201e-02	genotype_quality=842.8	ks_quality_p_value=0.933934	log10_base_likelihood=-5.9203	log10_qual_likelihood_position_model=3.31351	log10_strand_likelihood_position_model=1.08402	new_cov=0/3	polymorphism_quality=0.4	quality=0.4	quality_position_model=0.00352935	ref_cov=122/92	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=122/95
RA	2016	.	NC_007779	2704722	0	T	G	bias_e_value=1358430	bias_p_value=0.292365	fisher_strand_p_value=0.0887143	frequency=1.400757e-02	genotype_quality=839.6	ks_quality_p_value=0.948236	log10_base_likelihood=-7.80716	log10_qual_likelihood_position_model=1.68649	log10_strand_likelihood_position_model=1.05201	new_cov=0/3	polymorphism_quality=2.3	quality=2.3	quality_position_model=5.8892e-07	ref_cov=118/93	reject=POLYMORPHISM_STRAND	tot_cov=118/96
RA	2017	.	NC_007779	2704723	0	T	G	bias_e_value=1405900	bias_p_value=0.302583	fisher_strand_p_value=0.0887143	frequency=1.399708e-02	genotype_quality=844.3	ks_quality_p_value=0.995228	log10_base_likelihood=-7.38724	log10_qual_likelihood_position_model=2.06773	log10_strand_likelihood_position_model=1.05201	new_cov=0/3	polymorphism_quality=1.9	quality=1.9	quality_position_model=4.03364e-06	ref_cov=118/93	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=118/96
RA	2018	.	NC_007779	2704725	0	C	G	bias_e_value=1410540	bias_p_value=0.303581	fisher_strand_p_value=0.0887143	frequency=1.388359e-02	genotype_quality=889.4	ks_quality_p_value=0.999867	log10_base_likelihood=-5.82295	log10_qual_likelihood_position_model=2.45317	log10_strand_likelihood_position_model=1.05201	new_cov=0/3	polymorphism_quality=0.3	quality=0.3	quality_position_model=0.000472186	ref_cov=118/93	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=118/96
RA	2019	.	NC_007779	2704749	0	G	C	bias_e_value=260985	bias_p_value=0.0561702	fisher_strand_p_value=0.0877845	frequency=1.325417e-02	genotype_quality=925.9	ks_quality_p_value=0.114209	log10_base_likelihood=-7.37296	log10_qual_likelihood_position_model=2.37573	log10_strand_likelihood_position_model=1.05658	new_cov=0/3	polymorphism_quality=1.9	quality=1.9	quality_position_model=8.87944e-06	ref_cov=125/98	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=125/101
RA	2020	.	NC_007779	2704752	0	G	C	bias_e_value=913000	bias_p_value=0.196499	fisher_strand_p_value=0.0727095	frequency=1.294994e-02	genotype_quality=958.1	ks_quality_p_value=0.67263	log10_base_likelihood=-6.84793	log10_qual_likelihood_position_model=2.31896	log10_strand_likelihood_position_model=1.13841	new_cov=0/3	polymorphism_quality=1.3	quality=1.3	quality_position_model=3.37338e-05	ref_cov=134/94	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=134/97
RA	2021	.	NC_007779	2704763	0	A	C	bias_e_value=425902	bias_p_value=0.0916641	fisher_strand_p_value=0.0318595	frequency=1.686859e-02	genotype_quality=934.3	ks_quality_p_value=0.575562	log10_base_likelihood=-11.0238	log10_qual_likelihood_position_model=4.43333	log10_strand_likelihood_position_model=1.49676	new_cov=0/4	polymorphism_quality=5.6	quality=5.6	quality_position_model=5.54643e-07	ref_cov=136/97	reject=POLYMORPHISM_STRAND	tot_cov=136/101
RA	2022	.	NC_007779	2704776	0	G	C	bias_e_value=603948	bias_p_value=0.129984	fisher_strand_p_value=0.0311967	frequency=1.634789e-02	genotype_quality=993.7	ks_quality_p_value=0.914324	log10_base_likelihood=-7.70006	log10_qual_likelihood_position_model=4.64089	log10_strand_likelihood_position_model=1.50589	new_cov=0/4	polymorphism_quality=2.2	quality=2.2	quality_position_model=0.00326225	ref_cov=140/99	reject=POLYMORPHISM_STRAND	tot_cov=140/103
RA	2023	.	NC_007779	2704779	0	C	G	bias_e_value=669007	bias_p_value=0.143986	fisher_strand_p_value=0.0339147	frequency=1.627827e-02	genotype_quality=1004.2	ks_quality_p_value=0.959355	log10_base_likelihood=-8.77626	log10_qual_likelihood_position_model=2.93125	log10_strand_likelihood_position_model=1.46961	new_cov=0/4	polymorphism_quality=3.3	quality=3.3	quality_position_model=3.11045e-06	ref_cov=139/102	reject=POLYMORPHISM_STRAND	tot_cov=139/106
RA	2024	.	NC_007779	2705367	0	G	C	bias_e_value=16135	bias_p_value=0.00347264	fisher_strand_p_value=0.00446093	frequency=3.997517e-02	genotype_quality=908.7	ks_quality_p_value=0.0880368	log10_base_likelihood=-24.7717	log10_qual_likelihood_position_model=5.28778	log10_strand_likelihood_position_model=2.42026	new_cov=9/0	polymorphism_quality=19.5	quality=19.5	quality_position_model=3.33464e-19	ref_cov=114/102	reject=POLYMORPHISM_STRAND	tot_cov=123/102
RA	2025	.	NC_007779	2705370	0	T	G	bias_e_value=7609.67	bias_p_value=0.00163778	fisher_strand_p_value=0.00446093	frequency=3.997517e-02	genotype_quality=862.4	ks_quality_p_value=0.037908	log10_base_likelihood=-28.1313	log10_qual_likelihood_position_model=8.78228	log10_strand_likelihood_position_model=2.42026	new_cov=9/0	polymorphism_quality=22.9	quality=22.9	quality_position_model=4.56695e-19	ref_cov=114/102	reject=POLYMORPHISM_STRAND	tot_cov=123/102
RA	2026	.	NC_007779	2705373	0	C	T	bias_e_value=188580	bias_p_value=0.0405868	fisher_strand_p_value=0.0456574	frequency=4.140759e-02	genotype_quality=883.0	ks_quality_p_value=0.148274	log10_base_likelihood=-20.0589	log10_qual_likelihood_position_model=7.22076	log10_strand_likelihood_position_model=1.69755	new_cov=9/1	polymorphism_quality=14.8	quality=14.8	quality_position_model=3.43531e-13	ref_cov=119/102	reject=POLYMORPHISM_STRAND	tot_cov=128/103
RA	2027	.	NC_007779	2705376	0	C	A	bias_e_value=62723.5	bias_p_value=0.0134996	fisher_strand_p_value=0.00450474	frequency=3.828907e-02	genotype_quality=934.2	ks_quality_p_value=0.410972	log10_base_likelihood=-17.1382	log10_qual_likelihood_position_model=4.4012	log10_strand_likelihood_position_model=2.41536	new_cov=9/0	polymorphism_quality=11.8	quality=11.8	quality_position_model=2.34902e-12	ref_cov=119/106	reject=POLYMORPHISM_STRAND	tot_cov=128/106
RA	2028	.	NC_007779	2705400	0	C	G	bias_e_value=4414.85	bias_p_value=0.00095018	fisher_strand_p_value=0.00188779	frequency=4.383469e-02	genotype_quality=866.0	ks_quality_p_value=0.0489141	log10_base_likelihood=-28.0975	log10_qual_likelihood_position_model=6.98274	log10_strand_likelihood_position_model=2.83048	new_cov=10/0	polymorphism_quality=22.9	quality=22.9	quality_position_model=1.93985e-20	ref_cov=111/107	reject=POLYMORPHISM_STRAND	tot_cov=121/107
RA	2029	.	NC_007779	2705402	0	C	T	bias_e_value=57693.4	bias_p_value=0.012417	fisher_strand_p_value=0.00188779	frequency=4.129982e-02	genotype_quality=848.7	ks_quality_p_value=0.890218	log10_base_likelihood=-15.0845	log10_qual_likelihood_position_model=10.2502	log10_strand_likelihood_position_model=2.83048	new_cov=10/0	polymorphism_quality=9.7	quality=9.7	quality_position_model=0.00103638	ref_cov=111/107	reject=POLYMORPHISM_STRAND	tot_cov=121/107
RA	2030	.	NC_007779	2705403	0	A	G	bias_e_value=43636	bias_p_value=0.00939149	fisher_strand_p_value=0.00188779	frequency=4.349136e-02	genotype_quality=798.8	ks_quality_p_value=0.645201	log10_base_likelihood=-19.17	log10_qual_likelihood_position_model=10.8444	log10_strand_likelihood_position_model=2.83048	new_cov=10/0	polymorphism_quality=13.9	quality=13.9	quality_position_model=2.12473e-07	ref_cov=111/107	reject=POLYMORPHISM_STRAND	tot_cov=121/107
RA	2031	.	NC_007779	2705405	0	C	T	bias_e_value=35865.8	bias_p_value=0.00771917	fisher_strand_p_value=0.00196173	frequency=4.105663e-02	genotype_quality=896.8	ks_quality_p_value=0.495866	log10_base_likelihood=-18.2597	log10_qual_likelihood_position_model=9.07135	log10_strand_likelihood_position_model=2.80409	new_cov=10/0	polymorphism_quality=13.0	quality=13.0	quality_position_model=2.55625e-08	ref_cov=118/112	reject=POLYMORPHISM_STRAND	tot_cov=128/112
RA	2032	.	NC_007779	2705409	0	G	C	bias_e_value=40904.2	bias_p_value=0.00880355	fisher_strand_p_value=0.00268226	frequency=4.215622e-02	genotype_quality=927.2	ks_quality_p_value=0.42161	log10_base_likelihood=-26.0077	log10_qual_likelihood_position_model=6.67659	log10_strand_likelihood_position_model=2.6099	new_cov=10/0	polymorphism_quality=20.8	quality=20.8	quality_position_model=7.40958e-19	ref_cov=122/105	reject=POLYMORPHISM_STRAND	tot_cov=132/105
RA	2033	.	NC_007779	2705412	0	A	G	bias_e_value=696760	bias_p_value=0.149959	fisher_strand_p_value=0.0457832	frequency=4.195023e-02	genotype_quality=850.8	ks_quality_p_value=0.749044	log10_base_likelihood=-23.6388	log10_qual_likelihood_position_model=5.89261	log10_strand_likelihood_position_model=1.69314	new_cov=9/1	polymorphism_quality=18.4	quality=18.4	quality_position_model=3.52032e-18	ref_cov=123/105	reject=POLYMORPHISM_STRAND	tot_cov=132/106
RA	2034	.	NC_007779	2705415	0	C	A	bias_e_value=339813	bias_p_value=0.0731358	fisher_strand_p_value=0.0138535	frequency=4.243565e-02	genotype_quality=1007.5	ks_quality_p_value=1	log10_base_likelihood=-19.1745	log10_qual_likelihood_position_model=7.04661	log10_strand_likelihood_position_model=1.96482	new_cov=10/1	polymorphism_quality=13.9	quality=13.9	quality_position_model=3.40946e-12	ref_cov=127/112	reject=POLYMORPHISM_STRAND	tot_cov=137/113
RA	2035	.	NC_007779	2705416	0	A	T	bias_e_value=535934	bias_p_value=0.115346	fisher_strand_p_value=0.0254191	frequency=4.406357e-02	genotype_quality=940.4	ks_quality_p_value=0.963557	log10_base_likelihood=-26.4464	log10_qual_likelihood_position_model=6.13672	log10_strand_likelihood_position_model=1.94914	new_cov=10/1	polymorphism_quality=21.2	quality=21.2	quality_position_model=1.62413e-20	ref_cov=127/111	reject=POLYMORPHISM_STRAND	tot_cov=138/112
RA	2036	.	NC_007779	2705427	0	G	C	bias_e_value=57941	bias_p_value=0.0124703	fisher_strand_p_value=0.00171288	frequency=4.319572e-02	genotype_quality=922.0	ks_quality_p_value=0.985995	log10_base_likelihood=-24.6356	log10_qual_likelihood_position_model=6.61005	log10_strand_likelihood_position_model=2.92586	new_cov=10/0	polymorphism_quality=19.4	quality=19.4	quality_position_model=3.25751e-17	ref_cov=110/111	reject=POLYMORPHISM_STRAND	tot_cov=120/111
RA	2037	.	NC_007779	2705428	0	G	A	bias_e_value=261483	bias_p_value=0.0562773	fisher_strand_p_value=0.0102724	frequency=4.828691e-02	genotype_quality=866.5	ks_quality_p_value=0.978254	log10_base_likelihood=-23.2854	log10_qual_likelihood_position_model=6.60982	log10_strand_likelihood_position_model=2.2165	new_cov=10/1	polymorphism_quality=18.0	quality=18.0	quality_position_model=1.45434e-16	ref_cov=107/109	reject=POLYMORPHISM_STRAND	tot_cov=117/110
RA	2038	.	NC_007779	2705429	0	T	G	bias_e_value=85640.5	bias_p_value=0.0184319	fisher_strand_p_value=0.00279677	frequency=5.324173e-02	genotype_quality=791.5	ks_quality_p_value=0.951072	log10_base_likelihood=-33.8252	log10_qual_likelihood_position_model=9.21444	log10_strand_likelihood_position_model=2.75653	new_cov=12/1	polymorphism_quality=28.7	quality=28.7	quality_position_model=4.78501e-24	ref_cov=106/110	reject=POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=118/111
RA	2039	.	NC_007779	2705433	0	G	C	bias_e_value=437960	bias_p_value=0.0942592	fisher_strand_p_value=0.0190165	frequency=4.137611e-02	genotype_quality=951.9	ks_quality_p_value=0.998552	log10_base_likelihood=-23.1584	log10_qual_likelihood_position_model=6.40836	log10_strand_likelihood_position_model=2.03132	new_cov=9/1	polymorphism_quality=17.9	quality=17.9	quality_position_model=7.92968e-17	ref_cov=112/118	reject=POLYMORPHISM_STRAND	tot_cov=122/119
RA	2040	.	NC_007779	2705434	0	C	A	bias_e_value=438703	bias_p_value=0.0944193	fisher_strand_p_value=0.0190361	frequency=4.085922e-02	genotype_quality=965.7	ks_quality_p_value=0.999644	log10_base_likelihood=-18.507	log10_qual_likelihood_position_model=8.45327	log10_strand_likelihood_position_model=2.03114	new_cov=9/1	polymorphism_quality=13.2	quality=13.2	quality_position_model=5.27595e-10	ref_cov=113/119	reject=POLYMORPHISM_STRAND	tot_cov=122/120
RA	2041	.	NC_007779	2705435	0	A	G	bias_e_value=1056150	bias_p_value=0.227309	fisher_strand_p_value=0.0595628	frequency=4.516125e-02	genotype_quality=865.4	ks_quality_p_value=0.998427	log10_base_likelihood=-24.6749	log10_qual_likelihood_position_model=8.77761	log10_strand_likelihood_position_model=1.58071	new_cov=9/2	polymorphism_quality=19.4	quality=19.4	quality_position_model=2.02886e-16	ref_cov=113/118	tot_cov=122/120
RA	2042	.	NC_007779	2705439	0	T	G	bias_e_value=259903	bias_p_value=0.0559372	fisher_strand_p_value=0.00997514	frequency=4.391861e-02	genotype_quality=887.4	ks_quality_p_value=1	log10_base_likelihood=-28.2554	log10_qual_likelihood_position_model=8.65706	log10_strand_likelihood_position_model=2.33685	new_cov=10/1	polymorphism_quality=23.0	quality=23.0	quality_position_model=2.10267e-19	ref_cov=109/118	reject=POLYMORPHISM_STRAND	tot_cov=119/119
RA	2043	.	NC_007779	2705445	0	G	T	bias_e_value=263435	bias_p_value=0.0566975	fisher_strand_p_value=0.0101568	frequency=4.584408e-02	genotype_quality=935.0	ks_quality_p_value=0.998386	log10_base_likelihood=-26.0447	log10_qual_likelihood_position_model=12.7661	log10_strand_likelihood_position_model=2.25228	new_cov=10/1	polymorphism_quality=20.8	quality=20.8	quality_position_model=4.49184e-13	ref_cov=112/116	reject=POLYMORPHISM_STRAND	tot_cov=122/117
RA	2044	.	NC_007779	2705448	0	T	C	bias_e_value=401119	bias_p_value=0.0863302	fisher_strand_p_value=0.0194692	frequency=4.170990e-02	genotype_quality=847.6	ks_quality_p_value=0.87397	log10_base_likelihood=-21.8407	log10_qual_likelihood_position_model=7.75972	log10_strand_likelihood_position_model=1.95764	new_cov=9/1	polymorphism_quality=16.6	quality=16.6	quality_position_model=3.43161e-14	ref_cov=114/115	reject=POLYMORPHISM_STRAND	tot_cov=124/116
RA	2045	.	NC_007779	2705457	0	T	G	bias_e_value=2451620	bias_p_value=0.527647	fisher_strand_p_value=0.203598	frequency=1.699257e-02	genotype_quality=920.6	ks_quality_p_value=1	log10_base_likelihood=-9.9209	log10_qual_likelihood_position_model=4.40663	log10_strand_likelihood_position_model=0.843725	new_cov=4/1	polymorphism_quality=4.5	quality=4.5	quality_position_model=1.52974e-06	ref_cov=113/122	reject=POLYMORPHISM_STRAND	tot_cov=117/123
RA	2046	.	NC_007779	2705459	0	C	T	bias_e_value=2491100	bias_p_value=0.536144	fisher_strand_p_value=0.209019	frequency=1.970291e-02	genotype_quality=955.9	ks_quality_p_value=0.999821	log10_base_likelihood=-6.36105	log10_qual_likelihood_position_model=6.50851	log10_strand_likelihood_position_model=0.826724	new_cov=4/1	polymorphism_quality=0.8	quality=0.8	quality_position_model=Inf	ref_cov=114/120	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=118/121
RA	2047	.	NC_007779	2708935	0	A	C	bias_e_value=9.41926e-07	bias_p_value=2.02725e-13	fisher_strand_p_value=6.00741e-15	frequency=1.328754e-01	genotype_quality=559.9	ks_quality_p_value=1	log10_base_likelihood=-18.7652	log10_qual_likelihood_position_model=27.3491	log10_strand_likelihood_position_model=14.2213	new_cov=0/36	polymorphism_quality=13.5	quality=13.5	quality_position_model=Inf	ref_cov=121/64	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=121/100
RA	2048	.	NC_007779	2729445	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2049	.	NC_007779	2729448	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2050	.	NC_007779	2729450	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2051	.	NC_007779	2729451	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2052	.	NC_007779	2729452	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2053	.	NC_007779	2729453	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2054	.	NC_007779	2729454	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2055	.	NC_007779	2729455	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2056	.	NC_007779	2729457	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2057	.	NC_007779	2729458	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2058	.	NC_007779	2729459	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2059	.	NC_007779	2729460	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2060	.	NC_007779	2729461	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2061	.	NC_007779	2729462	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2062	.	NC_007779	2729463	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2063	.	NC_007779	2729464	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2064	.	NC_007779	2729465	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2065	.	NC_007779	2729466	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2066	.	NC_007779	2729467	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2067	.	NC_007779	2729468	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2068	.	NC_007779	2729469	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2069	.	NC_007779	2729470	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2070	.	NC_007779	2729472	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2071	.	NC_007779	2729473	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2072	.	NC_007779	2729475	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2073	.	NC_007779	2729476	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2074	.	NC_007779	2729477	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2075	.	NC_007779	2729478	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2076	.	NC_007779	2729479	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2077	.	NC_007779	2729480	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2078	.	NC_007779	2729482	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2079	.	NC_007779	2729483	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2080	.	NC_007779	2729484	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2081	.	NC_007779	2729485	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2082	.	NC_007779	2729486	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2083	.	NC_007779	2729487	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2084	.	NC_007779	2729488	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2085	.	NC_007779	2729489	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2086	.	NC_007779	2729490	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2087	.	NC_007779	2729492	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2088	.	NC_007779	2729493	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2089	.	NC_007779	2729494	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	2090	.	NC_007779	2729495	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2091	.	NC_007779	2729496	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2092	.	NC_007779	2729498	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=1/1	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	2093	.	NC_007779	2729499	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2094	.	NC_007779	2729500	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2095	.	NC_007779	2729501	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2096	.	NC_007779	2729502	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2097	.	NC_007779	2729503	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2098	.	NC_007779	2729504	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2099	.	NC_007779	2729505	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	2100	.	NC_007779	2729506	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	2101	.	NC_007779	2729507	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	2102	.	NC_007779	2729508	0	T	C	bias_e_value=3561490	bias_p_value=0.766516	fisher_strand_p_value=0.4	frequency=3.999739e-01	genotype_quality=6.7	ks_quality_p_value=1	log10_base_likelihood=-6.47291	log10_qual_likelihood_position_model=0.522879	log10_strand_likelihood_position_model=0.39794	new_cov=1/1	polymorphism_quality=0.9	quality=0.9	quality_position_model=1.8544e-07	ref_cov=0/3	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=1/4
RA	2103	.	NC_007779	2729511	0	T	C	bias_e_value=4438990	bias_p_value=0.955375	fisher_strand_p_value=1	frequency=2.499862e-01	genotype_quality=17.6	ks_quality_p_value=0.716531	log10_base_likelihood=-6.0554	log10_qual_likelihood_position_model=1.14613	log10_strand_likelihood_position_model=0.243038	new_cov=1/1	polymorphism_quality=0.5	quality=0.5	quality_position_model=1.54566e-06	ref_cov=3/3	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=4/4
RA	2104	.	NC_007779	2729520	0	A	G	bias_e_value=4384840	bias_p_value=0.943721	fisher_strand_p_value=1	frequency=9.111214e-02	genotype_quality=91.5	ks_quality_p_value=0.683842	log10_base_likelihood=-6.39407	log10_qual_likelihood_position_model=2.21836	log10_strand_likelihood_position_model=0.33187	new_cov=1/2	polymorphism_quality=0.9	quality=0.9	quality_position_model=1.12231e-05	ref_cov=10/19	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=11/21
RA	2105	.	NC_007779	2729523	0	A	G	bias_e_value=4585560	bias_p_value=0.986921	fisher_strand_p_value=1	frequency=7.306385e-02	genotype_quality=127.4	ks_quality_p_value=0.842687	log10_base_likelihood=-7.16836	log10_qual_likelihood_position_model=2.43669	log10_strand_likelihood_position_model=0.339783	new_cov=1/2	polymorphism_quality=1.7	quality=1.7	quality_position_model=2.98942e-06	ref_cov=14/24	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=15/26
RA	2106	.	NC_007779	2729528	0	G	C	bias_e_value=4608020	bias_p_value=0.991754	fisher_strand_p_value=1	frequency=5.449295e-02	genotype_quality=182.6	ks_quality_p_value=0.874358	log10_base_likelihood=-7.86994	log10_qual_likelihood_position_model=3.05715	log10_strand_likelihood_position_model=0.361672	new_cov=1/2	polymorphism_quality=2.4	quality=2.4	quality_position_model=2.59227e-06	ref_cov=22/30	reject=POLYMORPHISM_STRAND	tot_cov=23/32
RA	2107	.	NC_007779	2729529	0	G	C	bias_e_value=4618890	bias_p_value=0.994095	fisher_strand_p_value=1	frequency=5.449343e-02	genotype_quality=182.7	ks_quality_p_value=0.893311	log10_base_likelihood=-7.86996	log10_qual_likelihood_position_model=2.68649	log10_strand_likelihood_position_model=0.361672	new_cov=1/2	polymorphism_quality=2.4	quality=2.4	quality_position_model=1.06406e-06	ref_cov=22/30	reject=POLYMORPHISM_STRAND	tot_cov=23/32
RA	2108	.	NC_007779	2729530	0	G	C	bias_e_value=4646320	bias_p_value=0.999998	fisher_strand_p_value=1	frequency=5.441427e-02	genotype_quality=182.2	ks_quality_p_value=0.997904	log10_base_likelihood=-7.06481	log10_qual_likelihood_position_model=2.21476	log10_strand_likelihood_position_model=0.361672	new_cov=1/2	polymorphism_quality=1.6	quality=1.6	quality_position_model=2.37002e-06	ref_cov=22/30	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=23/32
RA	2109	.	NC_007779	2729531	0	A	G	bias_e_value=4626080	bias_p_value=0.995641	fisher_strand_p_value=1	frequency=4.825783e-02	genotype_quality=201.6	ks_quality_p_value=0.908092	log10_base_likelihood=-6.51453	log10_qual_likelihood_position_model=1.94224	log10_strand_likelihood_position_model=0.356307	new_cov=1/2	polymorphism_quality=1.0	quality=1.0	quality_position_model=4.56705e-06	ref_cov=24/35	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=25/37
RA	2110	.	NC_007779	2730847	0	G	C	bias_e_value=897557	bias_p_value=0.193175	fisher_strand_p_value=0.0500706	frequency=1.583385e-02	genotype_quality=1032.6	ks_quality_p_value=0.954841	log10_base_likelihood=-8.93164	log10_qual_likelihood_position_model=2.7546	log10_strand_likelihood_position_model=1.30042	new_cov=0/4	polymorphism_quality=3.5	quality=3.5	quality_position_model=9.3297e-07	ref_cov=132/116	reject=POLYMORPHISM_STRAND	tot_cov=132/120
RA	2111	.	NC_007779	2730857	0	T	G	bias_e_value=1756600	bias_p_value=0.378061	fisher_strand_p_value=0.122007	frequency=1.698208e-02	genotype_quality=917.7	ks_quality_p_value=0.997625	log10_base_likelihood=-8.60031	log10_qual_likelihood_position_model=4.8808	log10_strand_likelihood_position_model=1.1856	new_cov=0/4	polymorphism_quality=3.1	quality=3.1	quality_position_model=0.000276068	ref_cov=115/115	reject=POLYMORPHISM_STRAND	tot_cov=115/119
RA	2112	.	NC_007779	2730859	0	T	G	bias_e_value=1758920	bias_p_value=0.378561	fisher_strand_p_value=0.12212	frequency=1.714420e-02	genotype_quality=908.4	ks_quality_p_value=0.998652	log10_base_likelihood=-9.84212	log10_qual_likelihood_position_model=3.98984	log10_strand_likelihood_position_model=1.17811	new_cov=0/4	polymorphism_quality=4.4	quality=4.4	quality_position_model=1.51647e-06	ref_cov=114/115	reject=POLYMORPHISM_STRAND	tot_cov=114/119
RA	2113	.	NC_007779	2730862	0	A	G	bias_e_value=1676540	bias_p_value=0.360832	fisher_strand_p_value=0.12197	frequency=1.612473e-02	genotype_quality=935.4	ks_quality_p_value=0.93192	log10_base_likelihood=-7.66178	log10_qual_likelihood_position_model=2.41267	log10_strand_likelihood_position_model=1.20772	new_cov=0/4	polymorphism_quality=2.2	quality=2.2	quality_position_model=6.96041e-06	ref_cov=123/120	reject=POLYMORPHISM_STRAND	tot_cov=123/124
RA	2114	.	NC_007779	2730865	0	A	G	bias_e_value=1672690	bias_p_value=0.360003	fisher_strand_p_value=0.121998	frequency=1.642323e-02	genotype_quality=896.7	ks_quality_p_value=0.928585	log10_base_likelihood=-6.33778	log10_qual_likelihood_position_model=3.28202	log10_strand_likelihood_position_model=1.19333	new_cov=0/4	polymorphism_quality=0.8	quality=0.8	quality_position_model=0.00148117	ref_cov=119/118	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=119/122
RA	2115	.	NC_007779	2730871	0	A	G	bias_e_value=1588830	bias_p_value=0.341955	fisher_strand_p_value=0.121949	frequency=1.680470e-02	genotype_quality=914.1	ks_quality_p_value=0.86213	log10_base_likelihood=-7.6367	log10_qual_likelihood_position_model=2.44596	log10_strand_likelihood_position_model=1.19315	new_cov=0/4	polymorphism_quality=2.1	quality=2.1	quality_position_model=7.73746e-06	ref_cov=117/116	reject=POLYMORPHISM_STRAND	tot_cov=117/120
RA	2116	.	NC_007779	2730877	0	C	G	bias_e_value=1463080	bias_p_value=0.31489	fisher_strand_p_value=0.121842	frequency=1.674747e-02	genotype_quality=985.2	ks_quality_p_value=0.766743	log10_base_likelihood=-9.33728	log10_qual_likelihood_position_model=2.03537	log10_strand_likelihood_position_model=1.21523	new_cov=0/4	polymorphism_quality=3.9	quality=3.9	quality_position_model=5.18712e-08	ref_cov=119/115	reject=POLYMORPHISM_STRAND	tot_cov=120/119
RA	2117	.	NC_007779	2730883	0	C	G	bias_e_value=487468	bias_p_value=0.104914	fisher_strand_p_value=0.0517276	frequency=1.742077e-02	genotype_quality=920.4	ks_quality_p_value=0.419979	log10_base_likelihood=-8.73554	log10_qual_likelihood_position_model=3.64993	log10_strand_likelihood_position_model=1.28628	new_cov=0/4	polymorphism_quality=3.3	quality=3.3	quality_position_model=1.25002e-05	ref_cov=119/106	reject=POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=119/110
RA	2118	.	NC_007779	2730891	0	C	T	bias_e_value=1628220	bias_p_value=0.350432	fisher_strand_p_value=0.121589	frequency=1.876736e-02	genotype_quality=850.3	ks_quality_p_value=0.895885	log10_base_likelihood=-6.49044	log10_qual_likelihood_position_model=5.45734	log10_strand_likelihood_position_model=1.1918	new_cov=0/4	polymorphism_quality=1.0	quality=1.0	quality_position_model=Inf	ref_cov=104/103	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=104/107
RA	2119	.	NC_007779	2730894	0	A	G	bias_e_value=293074	bias_p_value=0.0630764	fisher_strand_p_value=0.122055	frequency=1.878738e-02	genotype_quality=816.4	ks_quality_p_value=0.0946315	log10_base_likelihood=-7.81611	log10_qual_likelihood_position_model=4.45338	log10_strand_likelihood_position_model=1.16744	new_cov=0/4	polymorphism_quality=2.3	quality=2.3	quality_position_model=0.00064103	ref_cov=103/105	reject=POLYMORPHISM_STRAND	tot_cov=103/109
RA	2120	.	NC_007779	2730900	0	A	C	bias_e_value=117180	bias_p_value=0.0252199	fisher_strand_p_value=0.123487	frequency=1.931763e-02	genotype_quality=783.2	ks_quality_p_value=0.0311266	log10_base_likelihood=-11.6222	log10_qual_likelihood_position_model=3.49516	log10_strand_likelihood_position_model=1.12568	new_cov=0/4	polymorphism_quality=6.2	quality=6.2	quality_position_model=5.91016e-09	ref_cov=98/105	reject=POLYMORPHISM_STRAND	tot_cov=98/109
RA	2121	.	NC_007779	2730901	0	C	G	bias_e_value=81936.5	bias_p_value=0.0176347	fisher_strand_p_value=0.124699	frequency=1.866722e-02	genotype_quality=837.7	ks_quality_p_value=0.0202572	log10_base_likelihood=-9.69627	log10_qual_likelihood_position_model=3.45277	log10_strand_likelihood_position_model=1.10489	new_cov=0/4	polymorphism_quality=4.3	quality=4.3	quality_position_model=4.9813e-07	ref_cov=100/110	reject=POLYMORPHISM_STRAND	tot_cov=100/114
RA	2122	.	NC_007779	2730904	0	C	A	bias_e_value=67101.2	bias_p_value=0.0144418	fisher_strand_p_value=0.124247	frequency=1.858807e-02	genotype_quality=876.9	ks_quality_p_value=0.0161132	log10_base_likelihood=-9.98464	log10_qual_likelihood_position_model=3.31756	log10_strand_likelihood_position_model=1.11304	new_cov=0/4	polymorphism_quality=4.5	quality=4.5	quality_position_model=1.84583e-07	ref_cov=101/110	reject=POLYMORPHISM_STRAND	tot_cov=101/114
RA	2123	.	NC_007779	2730910	0	T	C	bias_e_value=1620640	bias_p_value=0.3488	fisher_strand_p_value=0.373176	frequency=2.108860e-02	genotype_quality=759.4	ks_quality_p_value=0.289929	log10_base_likelihood=-8.37786	log10_qual_likelihood_position_model=5.30195	log10_strand_likelihood_position_model=0.736817	new_cov=1/4	polymorphism_quality=2.9	quality=2.9	quality_position_model=0.000447783	ref_cov=96/105	reject=POLYMORPHISM_STRAND	tot_cov=98/109
RA	2124	.	NC_007779	2730916	0	C	T	bias_e_value=503390	bias_p_value=0.108341	fisher_strand_p_value=0.127873	frequency=1.827431e-02	genotype_quality=880.9	ks_quality_p_value=0.176927	log10_base_likelihood=-7.70408	log10_qual_likelihood_position_model=3.81299	log10_strand_likelihood_position_model=1.06174	new_cov=0/4	polymorphism_quality=2.2	quality=2.2	quality_position_model=0.000133175	ref_cov=99/115	reject=POLYMORPHISM_STRAND	tot_cov=99/119
RA	2125	.	NC_007779	2730917	0	A	C	bias_e_value=1016650	bias_p_value=0.218807	fisher_strand_p_value=0.125513	frequency=1.800632e-02	genotype_quality=849.0	ks_quality_p_value=0.450024	log10_base_likelihood=-10.7103	log10_qual_likelihood_position_model=3.43666	log10_strand_likelihood_position_model=1.09354	new_cov=0/4	polymorphism_quality=5.3	quality=5.3	quality_position_model=4.15337e-08	ref_cov=103/115	reject=POLYMORPHISM_STRAND	tot_cov=103/119
RA	2126	.	NC_007779	2730918	0	T	C	bias_e_value=76200.1	bias_p_value=0.0164001	fisher_strand_p_value=0.125025	frequency=1.789379e-02	genotype_quality=830.1	ks_quality_p_value=0.0185648	log10_base_likelihood=-8.4268	log10_qual_likelihood_position_model=3.43978	log10_strand_likelihood_position_model=1.1014	new_cov=0/4	polymorphism_quality=3.0	quality=3.0	quality_position_model=1.01436e-05	ref_cov=104/115	reject=POLYMORPHISM_STRAND	tot_cov=104/119
RA	2127	.	NC_007779	2730919	0	A	G	bias_e_value=1085410	bias_p_value=0.233606	fisher_strand_p_value=0.12722	frequency=1.815033e-02	genotype_quality=834.9	ks_quality_p_value=0.485108	log10_base_likelihood=-7.13878	log10_qual_likelihood_position_model=4.96614	log10_strand_likelihood_position_model=1.06974	new_cov=0/4	polymorphism_quality=1.6	quality=1.6	quality_position_model=0.0106467	ref_cov=100/115	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=100/119
RA	2128	.	NC_007779	2730920	0	A	T	bias_e_value=891397	bias_p_value=0.19185	fisher_strand_p_value=0.12722	frequency=1.818943e-02	genotype_quality=836.8	ks_quality_p_value=0.37238	log10_base_likelihood=-8.76606	log10_qual_likelihood_position_model=4.548	log10_strand_likelihood_position_model=1.06974	new_cov=0/4	polymorphism_quality=3.3	quality=3.3	quality_position_model=6.09217e-05	ref_cov=100/115	reject=POLYMORPHISM_STRAND	tot_cov=100/119
RA	2129	.	NC_007779	2731753	0	C	G	bias_e_value=3287990	bias_p_value=0.707652	fisher_strand_p_value=0.345593	frequency=4.339218e-02	genotype_quality=910.6	ks_quality_p_value=0.986118	log10_base_likelihood=-24.5731	log10_qual_likelihood_position_model=7.03449	log10_strand_likelihood_position_model=0.812655	new_cov=6/4	polymorphism_quality=19.3	quality=19.3	quality_position_model=7.32792e-19	ref_cov=97/125	tot_cov=103/130
RA	2130	.	NC_007779	2731755	0	A	C	bias_e_value=3035510	bias_p_value=0.653314	fisher_strand_p_value=0.343311	frequency=4.328060e-02	genotype_quality=879.7	ks_quality_p_value=0.854955	log10_base_likelihood=-30.5118	log10_qual_likelihood_position_model=6.3089	log10_strand_likelihood_position_model=0.819585	new_cov=6/4	polymorphism_quality=25.3	quality=25.3	quality_position_model=1.36897e-25	ref_cov=96/125	tot_cov=102/129
RA	2131	.	NC_007779	2731756	0	T	C	bias_e_value=3121330	bias_p_value=0.671784	fisher_strand_p_value=0.345593	frequency=4.303074e-02	genotype_quality=845.7	ks_quality_p_value=0.893844	log10_base_likelihood=-23.5547	log10_qual_likelihood_position_model=7.51893	log10_strand_likelihood_position_model=0.812655	new_cov=6/4	polymorphism_quality=18.3	quality=18.3	quality_position_model=2.442e-17	ref_cov=97/125	tot_cov=103/129
RA	2132	.	NC_007779	2731762	0	A	G	bias_e_value=4574750	bias_p_value=0.984594	fisher_strand_p_value=0.830449	frequency=9.969950e-02	genotype_quality=759.8	ks_quality_p_value=0.999075	log10_base_likelihood=-61.2989	log10_qual_likelihood_position_model=9.65907	log10_strand_likelihood_position_model=0.782741	new_cov=11/13	polymorphism_quality=56.3	quality=56.3	quality_position_model=3.13332e-53	ref_cov=93/123	tot_cov=104/136
RA	2133	.	NC_007779	2731768	0	T	C	bias_e_value=4141060	bias_p_value=0.891253	fisher_strand_p_value=0.582425	frequency=1.393490e-01	genotype_quality=721.6	ks_quality_p_value=0.981253	log10_base_likelihood=-101.674	log10_qual_likelihood_position_model=11.3258	log10_strand_likelihood_position_model=0.934039	new_cov=17/18	polymorphism_quality=96.7	quality=96.7	quality_position_model=6.564e-92	ref_cov=92/124	tot_cov=109/142
RA	2134	.	NC_007779	2731786	0	C	G	bias_e_value=2768590	bias_p_value=0.595865	fisher_strand_p_value=0.301301	frequency=1.470337e-01	genotype_quality=880.6	ks_quality_p_value=0.828042	log10_base_likelihood=-130.234	log10_qual_likelihood_position_model=11.706	log10_strand_likelihood_position_model=1.15335	new_cov=21/19	polymorphism_quality=125.4	quality=125.4	quality_position_model=6.27841e-120	ref_cov=99/133	tot_cov=120/152
RA	2135	.	NC_007779	2731787	0	G	C	bias_e_value=2477890	bias_p_value=0.5333	fisher_strand_p_value=0.229983	frequency=1.459618e-01	genotype_quality=887.3	ks_quality_p_value=0.900807	log10_base_likelihood=-132.357	log10_qual_likelihood_position_model=10.1768	log10_strand_likelihood_position_model=1.20267	new_cov=21/19	polymorphism_quality=127.5	quality=127.5	quality_position_model=1.54323e-123	ref_cov=98/136	reject=SURROUNDING_HOMOPOLYMER	tot_cov=119/155
RA	2136	.	NC_007779	2731794	0	T	C	bias_e_value=2432640	bias_p_value=0.523562	fisher_strand_p_value=0.23599	frequency=1.432629e-01	genotype_quality=776.3	ks_quality_p_value=0.851909	log10_base_likelihood=-110.222	log10_qual_likelihood_position_model=13.4244	log10_strand_likelihood_position_model=1.21681	new_cov=22/19	polymorphism_quality=105.3	quality=105.3	quality_position_model=4.32697e-98	ref_cov=105/139	tot_cov=127/158
RA	2137	.	NC_007779	2731795	0	A	G	bias_e_value=2908250	bias_p_value=0.625924	fisher_strand_p_value=0.308477	frequency=1.412168e-01	genotype_quality=793.1	ks_quality_p_value=0.881236	log10_base_likelihood=-112.054	log10_qual_likelihood_position_model=13.0171	log10_strand_likelihood_position_model=1.10337	new_cov=21/19	polymorphism_quality=107.1	quality=107.1	quality_position_model=1.89732e-100	ref_cov=106/137	tot_cov=127/156
RA	2138	.	NC_007779	2731798	0	T	C	bias_e_value=3122330	bias_p_value=0.671998	fisher_strand_p_value=0.309457	frequency=1.427102e-01	genotype_quality=791.1	ks_quality_p_value=0.99881	log10_base_likelihood=-113.254	log10_qual_likelihood_position_model=12.0934	log10_strand_likelihood_position_model=1.09576	new_cov=21/19	polymorphism_quality=108.3	quality=108.3	quality_position_model=1.38729e-102	ref_cov=105/135	tot_cov=126/154
RA	2139	.	NC_007779	2731804	0	A	G	bias_e_value=3511470	bias_p_value=0.755752	fisher_strand_p_value=0.392493	frequency=1.405635e-01	genotype_quality=809.2	ks_quality_p_value=0.989664	log10_base_likelihood=-112.186	log10_qual_likelihood_position_model=12.1733	log10_strand_likelihood_position_model=1.07071	new_cov=21/19	polymorphism_quality=107.3	quality=107.3	quality_position_model=1.85124e-101	ref_cov=108/136	tot_cov=129/155
RA	2140	.	NC_007779	2731805	0	G	C	bias_e_value=3396930	bias_p_value=0.731099	fisher_strand_p_value=0.392239	frequency=1.433568e-01	genotype_quality=900.5	ks_quality_p_value=0.92609	log10_base_likelihood=-132.715	log10_qual_likelihood_position_model=8.99691	log10_strand_likelihood_position_model=1.06509	new_cov=21/19	polymorphism_quality=127.8	quality=127.8	quality_position_model=3.23592e-125	ref_cov=106/133	tot_cov=127/152
RA	2141	.	NC_007779	2731806	0	A	T	bias_e_value=3479180	bias_p_value=0.748801	fisher_strand_p_value=0.390681	frequency=1.440945e-01	genotype_quality=882.4	ks_quality_p_value=0.975625	log10_base_likelihood=-125.403	log10_qual_likelihood_position_model=11.1265	log10_strand_likelihood_position_model=1.08809	new_cov=21/19	polymorphism_quality=120.5	quality=120.5	quality_position_model=9.81646e-116	ref_cov=104/133	tot_cov=125/152
RA	2142	.	NC_007779	2731807	0	A	C	bias_e_value=1275620	bias_p_value=0.274543	fisher_strand_p_value=0.390681	frequency=1.443224e-01	genotype_quality=788.3	ks_quality_p_value=0.197211	log10_base_likelihood=-145.137	log10_qual_likelihood_position_model=11.7271	log10_strand_likelihood_position_model=1.08809	new_cov=21/19	polymorphism_quality=140.3	quality=140.3	quality_position_model=6.68017e-135	ref_cov=104/133	tot_cov=125/152
RA	2143	.	NC_007779	2731813	0	G	A	bias_e_value=3530070	bias_p_value=0.759753	fisher_strand_p_value=0.397408	frequency=1.517005e-01	genotype_quality=802.9	ks_quality_p_value=0.988135	log10_base_likelihood=-105.577	log10_qual_likelihood_position_model=17.4437	log10_strand_likelihood_position_model=1.04337	new_cov=21/20	polymorphism_quality=100.7	quality=100.7	quality_position_model=1.40331e-89	ref_cov=100/129	tot_cov=121/149
RA	2144	.	NC_007779	2731814	0	G	C	bias_e_value=2274890	bias_p_value=0.489609	fisher_strand_p_value=0.397408	frequency=1.518655e-01	genotype_quality=850.2	ks_quality_p_value=0.454324	log10_base_likelihood=-133.084	log10_qual_likelihood_position_model=12.6421	log10_strand_likelihood_position_model=1.04337	new_cov=21/20	polymorphism_quality=128.2	quality=128.2	quality_position_model=5.89255e-122	ref_cov=100/129	tot_cov=121/149
RA	2145	.	NC_007779	2731816	0	A	G	bias_e_value=3905130	bias_p_value=0.840477	fisher_strand_p_value=0.494353	frequency=1.626019e-01	genotype_quality=683.4	ks_quality_p_value=0.99385	log10_base_likelihood=-118.148	log10_qual_likelihood_position_model=12.0622	log10_strand_likelihood_position_model=1.00077	new_cov=21/20	polymorphism_quality=113.2	quality=113.2	quality_position_model=1.29236e-107	ref_cov=94/117	tot_cov=115/137
RA	2146	.	NC_007779	2731822	0	C	G	bias_e_value=3877800	bias_p_value=0.834594	fisher_strand_p_value=0.489687	frequency=1.587119e-01	genotype_quality=764.5	ks_quality_p_value=0.986613	log10_base_likelihood=-127.196	log10_qual_likelihood_position_model=12.1565	log10_strand_likelihood_position_model=0.991654	new_cov=20/20	polymorphism_quality=122.3	quality=122.3	quality_position_model=1.3517e-116	ref_cov=92/120	tot_cov=112/140
RA	2147	.	NC_007779	2731825	0	T	C	bias_e_value=3623110	bias_p_value=0.779779	fisher_strand_p_value=0.607797	frequency=1.458645e-01	genotype_quality=765.0	ks_quality_p_value=0.682413	log10_base_likelihood=-115.422	log10_qual_likelihood_position_model=12.1616	log10_strand_likelihood_position_model=0.94537	new_cov=20/20	polymorphism_quality=110.5	quality=110.5	quality_position_model=7.71144e-105	ref_cov=105/129	tot_cov=125/149
RA	2148	.	NC_007779	2731827	0	T	G	bias_e_value=3183340	bias_p_value=0.68513	fisher_strand_p_value=0.607797	frequency=1.460223e-01	genotype_quality=758.0	ks_quality_p_value=0.52723	log10_base_likelihood=-143.991	log10_qual_likelihood_position_model=12.7518	log10_strand_likelihood_position_model=0.94537	new_cov=20/20	polymorphism_quality=139.1	quality=139.1	quality_position_model=7.17913e-133	ref_cov=105/129	tot_cov=125/149
RA	2149	.	NC_007779	2731840	0	T	C	bias_e_value=4445840	bias_p_value=0.956848	fisher_strand_p_value=0.729876	frequency=1.421800e-01	genotype_quality=775.1	ks_quality_p_value=0.987829	log10_base_likelihood=-109.479	log10_qual_likelihood_position_model=10.2529	log10_strand_likelihood_position_model=0.910364	new_cov=20/19	polymorphism_quality=104.6	quality=104.6	quality_position_model=7.85439e-101	ref_cov=111/124	tot_cov=131/143
RA	2150	.	NC_007779	2731855	0	T	C	bias_e_value=3617100	bias_p_value=0.778486	fisher_strand_p_value=0.439744	frequency=6.195402e-02	genotype_quality=914.8	ks_quality_p_value=0.939868	log10_base_likelihood=-40.8399	log10_qual_likelihood_position_model=6.78431	log10_strand_likelihood_position_model=0.91338	new_cov=10/6	polymorphism_quality=35.7	quality=35.7	quality_position_model=2.00863e-35	ref_cov=119/123	tot_cov=129/129
RA	2151	.	NC_007779	2731858	0	T	C	bias_e_value=3690780	bias_p_value=0.794343	fisher_strand_p_value=0.439744	frequency=6.194496e-02	genotype_quality=922.3	ks_quality_p_value=0.981718	log10_base_likelihood=-40.3904	log10_qual_likelihood_position_model=7.10817	log10_strand_likelihood_position_model=0.91338	new_cov=10/6	polymorphism_quality=35.3	quality=35.3	quality_position_model=1.20593e-34	ref_cov=119/123	tot_cov=129/129
RA	2152	.	NC_007779	2731861	0	A	G	bias_e_value=3917610	bias_p_value=0.843162	fisher_strand_p_value=0.495233	frequency=3.048992e-02	genotype_quality=978.4	ks_quality_p_value=0.999756	log10_base_likelihood=-15.6344	log10_qual_likelihood_position_model=7.75093	log10_strand_likelihood_position_model=0.670868	new_cov=5/3	polymorphism_quality=10.3	quality=10.3	quality_position_model=3.58297e-09	ref_cov=123/129	tot_cov=128/132
RA	2153	.	NC_007779	2739249	0	A	G	bias_e_value=150645	bias_p_value=0.0324223	fisher_strand_p_value=0.062459	frequency=4.049492e-02	genotype_quality=982.3	ks_quality_p_value=0.0828742	log10_base_likelihood=-23.9363	log10_qual_likelihood_position_model=9.75354	log10_strand_likelihood_position_model=1.47799	new_cov=9/2	polymorphism_quality=18.7	quality=18.7	quality_position_model=8.79467e-15	ref_cov=131/127	tot_cov=140/129
RA	2154	.	NC_007779	2739252	0	A	G	bias_e_value=14799.4	bias_p_value=0.00318518	fisher_strand_p_value=0.064802	frequency=4.378605e-02	genotype_quality=873.2	ks_quality_p_value=0.0054982	log10_base_likelihood=-27.8039	log10_qual_likelihood_position_model=5.54094	log10_strand_likelihood_position_model=1.42494	new_cov=9/2	polymorphism_quality=22.6	quality=22.6	quality_position_model=5.08435e-23	ref_cov=124/116	tot_cov=133/118
RA	2155	.	NC_007779	2739255	0	A	G	bias_e_value=52004.3	bias_p_value=0.0111926	fisher_strand_p_value=0.064733	frequency=4.308319e-02	genotype_quality=911.3	ks_quality_p_value=0.0230275	log10_base_likelihood=-27.2433	log10_qual_likelihood_position_model=7.22312	log10_strand_likelihood_position_model=1.42718	new_cov=9/2	polymorphism_quality=22.0	quality=22.0	quality_position_model=9.45152e-21	ref_cov=126/118	tot_cov=135/120
RA	2156	.	NC_007779	2739257	0	C	T	bias_e_value=554095	bias_p_value=0.119254	fisher_strand_p_value=0.064733	frequency=4.295635e-02	genotype_quality=968.4	ks_quality_p_value=0.394737	log10_base_likelihood=-22.3447	log10_qual_likelihood_position_model=8.91272	log10_strand_likelihood_position_model=1.42718	new_cov=9/2	polymorphism_quality=17.1	quality=17.1	quality_position_model=4.53002e-14	ref_cov=126/118	tot_cov=135/120
RA	2157	.	NC_007779	2739258	0	C	G	bias_e_value=461840	bias_p_value=0.0993989	fisher_strand_p_value=0.064733	frequency=4.310417e-02	genotype_quality=1019.4	ks_quality_p_value=0.313544	log10_base_likelihood=-30.3487	log10_qual_likelihood_position_model=7.41458	log10_strand_likelihood_position_model=1.42718	new_cov=9/2	polymorphism_quality=25.2	quality=25.2	quality_position_model=1.073e-23	ref_cov=126/118	tot_cov=135/120
RA	2158	.	NC_007779	2739270	0	C	T	bias_e_value=1080430	bias_p_value=0.232535	fisher_strand_p_value=0.0634681	frequency=4.228497e-02	genotype_quality=984.1	ks_quality_p_value=0.966329	log10_base_likelihood=-21.8719	log10_qual_likelihood_position_model=9.87438	log10_strand_likelihood_position_model=1.45176	new_cov=9/2	polymorphism_quality=16.6	quality=16.6	quality_position_model=1.38764e-12	ref_cov=127/121	tot_cov=136/123
RA	2159	.	NC_007779	2739276	0	G	A	bias_e_value=1542300	bias_p_value=0.331939	fisher_strand_p_value=0.118287	frequency=4.173183e-02	genotype_quality=995.2	ks_quality_p_value=0.85158	log10_base_likelihood=-23.5653	log10_qual_likelihood_position_model=4.97544	log10_strand_likelihood_position_model=1.30471	new_cov=9/2	polymorphism_quality=18.3	quality=18.3	quality_position_model=1.98987e-19	ref_cov=136/116	tot_cov=145/118
RA	2160	.	NC_007779	2739279	0	C	G	bias_e_value=1685480	bias_p_value=0.362754	fisher_strand_p_value=0.118328	frequency=4.130459e-02	genotype_quality=1050.9	ks_quality_p_value=0.968086	log10_base_likelihood=-29.2965	log10_qual_likelihood_position_model=5.7123	log10_strand_likelihood_position_model=1.31766	new_cov=9/2	polymorphism_quality=24.1	quality=24.1	quality_position_model=1.83483e-24	ref_cov=137/118	tot_cov=146/120
RA	2161	.	NC_007779	2739281	0	T	G	bias_e_value=1722360	bias_p_value=0.370693	fisher_strand_p_value=0.118395	frequency=4.113960e-02	genotype_quality=1017.8	ks_quality_p_value=0.998713	log10_base_likelihood=-31.131	log10_qual_likelihood_position_model=8.09627	log10_strand_likelihood_position_model=1.32869	new_cov=9/2	polymorphism_quality=25.9	quality=25.9	quality_position_model=6.75344e-24	ref_cov=137/119	tot_cov=146/121
RA	2162	.	NC_007779	2739282	0	T	C	bias_e_value=1210300	bias_p_value=0.260485	fisher_strand_p_value=0.0717311	frequency=4.095554e-02	genotype_quality=983.7	ks_quality_p_value=0.998703	log10_base_likelihood=-20.9728	log10_qual_likelihood_position_model=8.2063	log10_strand_likelihood_position_model=1.33805	new_cov=9/2	polymorphism_quality=15.7	quality=15.7	quality_position_model=1.74892e-13	ref_cov=136/119	tot_cov=145/121
RA	2163	.	NC_007779	2739284	0	C	G	bias_e_value=1718640	bias_p_value=0.369891	fisher_strand_p_value=0.118467	frequency=4.081631e-02	genotype_quality=1076.3	ks_quality_p_value=0.994941	log10_base_likelihood=-28.7933	log10_qual_likelihood_position_model=7.937	log10_strand_likelihood_position_model=1.33041	new_cov=9/2	polymorphism_quality=23.6	quality=23.6	quality_position_model=1.07695e-21	ref_cov=138/120	tot_cov=147/122
RA	2164	.	NC_007779	2739285	0	A	G	bias_e_value=1722010	bias_p_value=0.370617	fisher_strand_p_value=0.11854	frequency=4.001904e-02	genotype_quality=972.1	ks_quality_p_value=0.997194	log10_base_likelihood=-22.9995	log10_qual_likelihood_position_model=8.6489	log10_strand_likelihood_position_model=1.3321	new_cov=9/2	polymorphism_quality=17.7	quality=17.7	quality_position_model=4.22044e-15	ref_cov=139/121	tot_cov=148/123
RA	2165	.	NC_007779	2739291	0	A	G	bias_e_value=1053840	bias_p_value=0.226811	fisher_strand_p_value=0.0646379	frequency=4.199696e-02	genotype_quality=928.7	ks_quality_p_value=0.917306	log10_base_likelihood=-24.6586	log10_qual_likelihood_position_model=6.43123	log10_strand_likelihood_position_model=1.43043	new_cov=9/2	polymorphism_quality=19.4	quality=19.4	quality_position_model=6.21023e-19	ref_cov=129/121	reject=SURROUNDING_HOMOPOLYMER	tot_cov=138/123
RA	2166	.	NC_007779	2739292	0	G	A	bias_e_value=1101080	bias_p_value=0.236979	fisher_strand_p_value=0.0629305	frequency=4.209423e-02	genotype_quality=979.8	ks_quality_p_value=1	log10_base_likelihood=-22.6731	log10_qual_likelihood_position_model=6.59634	log10_strand_likelihood_position_model=1.46347	new_cov=9/2	polymorphism_quality=17.4	quality=17.4	quality_position_model=1.01438e-16	ref_cov=127/122	tot_cov=136/124
RA	2167	.	NC_007779	2739293	0	T	C	bias_e_value=650511	bias_p_value=0.140005	fisher_strand_p_value=0.0355759	frequency=4.695034e-02	genotype_quality=884.9	ks_quality_p_value=0.882064	log10_base_likelihood=-27.1366	log10_qual_likelihood_position_model=7.32409	log10_strand_likelihood_position_model=1.71454	new_cov=10/2	polymorphism_quality=21.9	quality=21.9	quality_position_model=2.99401e-20	ref_cov=122/121	tot_cov=132/123
RA	2168	.	NC_007779	2739294	0	T	C	bias_e_value=536709	bias_p_value=0.115512	fisher_strand_p_value=0.0615521	frequency=4.308319e-02	genotype_quality=907.1	ks_quality_p_value=0.39865	log10_base_likelihood=-25.9842	log10_qual_likelihood_position_model=5.95726	log10_strand_likelihood_position_model=1.49624	new_cov=9/2	polymorphism_quality=20.8	quality=20.8	quality_position_model=1.0927e-20	ref_cov=123/121	tot_cov=132/123
RA	2169	.	NC_007779	2739300	0	T	C	bias_e_value=1059000	bias_p_value=0.227922	fisher_strand_p_value=0.0612105	frequency=4.248619e-02	genotype_quality=942.8	ks_quality_p_value=0.975105	log10_base_likelihood=-24.1324	log10_qual_likelihood_position_model=5.50792	log10_strand_likelihood_position_model=1.50873	new_cov=9/2	polymorphism_quality=18.9	quality=18.9	quality_position_model=2.95334e-19	ref_cov=124/123	tot_cov=133/125
RA	2170	.	NC_007779	2739306	0	T	G	bias_e_value=1060780	bias_p_value=0.228306	fisher_strand_p_value=0.0600214	frequency=4.392719e-02	genotype_quality=941.3	ks_quality_p_value=0.996692	log10_base_likelihood=-30.3631	log10_qual_likelihood_position_model=7.12003	log10_strand_likelihood_position_model=1.55552	new_cov=9/2	polymorphism_quality=25.2	quality=25.2	quality_position_model=7.05013e-24	ref_cov=118/121	tot_cov=127/123
RA	2171	.	NC_007779	2739309	0	A	G	bias_e_value=1063620	bias_p_value=0.228916	fisher_strand_p_value=0.0600612	frequency=4.264259e-02	genotype_quality=903.3	ks_quality_p_value=0.999638	log10_base_likelihood=-20.9792	log10_qual_likelihood_position_model=9.49674	log10_strand_likelihood_position_model=1.55564	new_cov=9/2	polymorphism_quality=15.7	quality=15.7	quality_position_model=5.94081e-12	ref_cov=119/122	tot_cov=128/124
RA	2172	.	NC_007779	2739312	0	A	C	bias_e_value=1054930	bias_p_value=0.227045	fisher_strand_p_value=0.0611438	frequency=4.363632e-02	genotype_quality=943.9	ks_quality_p_value=0.971084	log10_base_likelihood=-31.7858	log10_qual_likelihood_position_model=7.05052	log10_strand_likelihood_position_model=1.50725	new_cov=9/2	polymorphism_quality=26.6	quality=26.6	quality_position_model=1.9638e-25	ref_cov=121/120	tot_cov=130/122
RA	2173	.	NC_007779	2739321	0	T	C	bias_e_value=3021270	bias_p_value=0.650248	fisher_strand_p_value=0.447661	frequency=2.875423e-02	genotype_quality=908.9	ks_quality_p_value=0.650097	log10_base_likelihood=-15.5841	log10_qual_likelihood_position_model=3.79071	log10_strand_likelihood_position_model=0.749704	new_cov=5/2	polymorphism_quality=10.2	quality=10.2	quality_position_model=4.31222e-13	ref_cov=120/116	tot_cov=125/118
RA	2174	.	NC_007779	2756639	0	T	.	bias_e_value=4621700	bias_p_value=0.994699	fisher_strand_p_value=1	frequency=1.469707e-02	genotype_quality=810.5	ks_quality_p_value=0.89882	log10_base_likelihood=-8.33254	log10_qual_likelihood_position_model=2.09052	log10_strand_likelihood_position_model=0.415486	new_cov=2/1	polymorphism_quality=2.9	quality=2.9	quality_position_model=9.63743e-08	ref_cov=102/99	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=104/100
RA	2175	.	NC_007779	2771144	0	G	T	bias_e_value=0.316021	bias_p_value=6.80151e-08	fisher_strand_p_value=3.63994e-09	frequency=6.766224e-02	genotype_quality=750.6	ks_quality_p_value=0.910383	log10_base_likelihood=-13.46	log10_qual_likelihood_position_model=23.6869	log10_strand_likelihood_position_model=8.43891	new_cov=0/19	polymorphism_quality=8.1	quality=8.1	quality_position_model=Inf	ref_cov=142/70	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=142/89
RA	2176	.	NC_007779	2774179	0	A	T	bias_e_value=78593.9	bias_p_value=0.0169153	fisher_strand_p_value=0.00240626	frequency=3.909397e-02	genotype_quality=662.4	ks_quality_p_value=1	log10_base_likelihood=-6.25299	log10_qual_likelihood_position_model=13.4267	log10_strand_likelihood_position_model=2.61866	new_cov=8/0	polymorphism_quality=0.7	quality=0.7	quality_position_model=Inf	ref_cov=80/95	reject=EVALUE,POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=88/95
RA	2177	.	NC_007779	2782992	1	.	T	bias_e_value=3918840	bias_p_value=0.843427	fisher_strand_p_value=0.499205	frequency=1.226997e-02	genotype_quality=795.3	ks_quality_p_value=0.992559	log10_base_likelihood=-8.6294	log10_qual_likelihood_position_model=2.45791	log10_strand_likelihood_position_model=0.547685	new_cov=0/2	polymorphism_quality=3.2	quality=3.2	quality_position_model=1.56276e-07	ref_cov=76/85	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=76/87
RA	2178	.	NC_007779	2783983	0	T	G	bias_e_value=0.465457	bias_p_value=1.00177e-07	fisher_strand_p_value=4.9795e-09	frequency=6.172371e-02	genotype_quality=417.1	ks_quality_p_value=1	log10_base_likelihood=-5.66503	log10_qual_likelihood_position_model=16.572	log10_strand_likelihood_position_model=8.30281	new_cov=23/0	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=51/81	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=74/81
RA	2179	.	NC_007779	2791171	0	G	T	bias_e_value=13.7078	bias_p_value=2.95024e-06	fisher_strand_p_value=1.78377e-07	frequency=9.723616e-02	genotype_quality=603.1	ks_quality_p_value=1	log10_base_likelihood=-17.1335	log10_qual_likelihood_position_model=15.4547	log10_strand_likelihood_position_model=6.81888	new_cov=0/22	polymorphism_quality=11.8	quality=11.8	quality_position_model=Inf	ref_cov=96/81	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=96/103
RA	2180	.	NC_007779	2791635	0	C	T	bias_e_value=2.0823e-05	bias_p_value=4.4816e-12	fisher_strand_p_value=1.46695e-13	frequency=9.230661e-02	genotype_quality=551.1	ks_quality_p_value=1	log10_base_likelihood=-12.4319	log10_qual_likelihood_position_model=18.6782	log10_strand_likelihood_position_model=12.8336	new_cov=0/18	polymorphism_quality=7.0	quality=7.0	quality_position_model=Inf	ref_cov=129/22	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=129/40
RA	2181	.	NC_007779	2791639	0	C	G	bias_e_value=0.804829	bias_p_value=1.73218e-07	fisher_strand_p_value=8.87228e-09	frequency=6.105471e-02	genotype_quality=626.0	ks_quality_p_value=0.999094	log10_base_likelihood=-7.51454	log10_qual_likelihood_position_model=15.3217	log10_strand_likelihood_position_model=8.05196	new_cov=0/13	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=129/34	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=129/47
RA	2182	.	NC_007779	2797644	0	C	A	bias_e_value=0.815762	bias_p_value=1.75571e-07	fisher_strand_p_value=8.9999e-09	frequency=7.983255e-02	genotype_quality=635.3	ks_quality_p_value=0.999033	log10_base_likelihood=-16.2439	log10_qual_likelihood_position_model=13.7651	log10_strand_likelihood_position_model=8.04576	new_cov=0/16	polymorphism_quality=10.9	quality=10.9	quality_position_model=Inf	ref_cov=125/49	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=125/65
RA	2183	.	NC_007779	2801044	0	C	G	bias_e_value=2663470	bias_p_value=0.573241	fisher_strand_p_value=0.275553	frequency=2.775764e-02	genotype_quality=1039.0	ks_quality_p_value=0.847634	log10_base_likelihood=-18.231	log10_qual_likelihood_position_model=3.22982	log10_strand_likelihood_position_model=0.808411	new_cov=2/5	polymorphism_quality=12.9	quality=12.9	quality_position_model=2.70952e-16	ref_cov=126/119	tot_cov=128/124
RA	2184	.	NC_007779	2801048	0	G	C	bias_e_value=2082020	bias_p_value=0.448099	fisher_strand_p_value=0.262908	frequency=2.751827e-02	genotype_quality=1020.5	ks_quality_p_value=0.598016	log10_base_likelihood=-18.5502	log10_qual_likelihood_position_model=4.0894	log10_strand_likelihood_position_model=0.853393	new_cov=2/5	polymorphism_quality=13.2	quality=13.2	quality_position_model=1.06446e-15	ref_cov=131/116	tot_cov=133/122
RA	2185	.	NC_007779	2801050	0	T	G	bias_e_value=1879260	bias_p_value=0.40446	fisher_strand_p_value=0.25844	frequency=2.810383e-02	genotype_quality=963.1	ks_quality_p_value=0.520676	log10_base_likelihood=-20.6364	log10_qual_likelihood_position_model=4.13138	log10_strand_likelihood_position_model=0.873056	new_cov=2/5	polymorphism_quality=15.4	quality=15.4	quality_position_model=9.40352e-18	ref_cov=130/112	tot_cov=132/117
RA	2186	.	NC_007779	2801060	0	C	A	bias_e_value=2896090	bias_p_value=0.623306	fisher_strand_p_value=0.272049	frequency=2.766991e-02	genotype_quality=1020.8	ks_quality_p_value=0.99187	log10_base_likelihood=-15.898	log10_qual_likelihood_position_model=5.2126	log10_strand_likelihood_position_model=0.8195	new_cov=2/5	polymorphism_quality=10.6	quality=10.6	quality_position_model=6.85575e-12	ref_cov=127/118	tot_cov=129/123
RA	2187	.	NC_007779	2801061	0	G	C	bias_e_value=2806260	bias_p_value=0.603973	fisher_strand_p_value=0.267081	frequency=2.779198e-02	genotype_quality=1012.3	ks_quality_p_value=0.956185	log10_base_likelihood=-17.6085	log10_qual_likelihood_position_model=4.6386	log10_strand_likelihood_position_model=0.836729	new_cov=2/5	polymorphism_quality=12.3	quality=12.3	quality_position_model=3.35346e-14	ref_cov=128/116	tot_cov=130/122
RA	2188	.	NC_007779	2801062	0	A	C	bias_e_value=2590110	bias_p_value=0.557452	fisher_strand_p_value=0.268892	frequency=2.756119e-02	genotype_quality=953.5	ks_quality_p_value=0.828889	log10_base_likelihood=-19.1149	log10_qual_likelihood_position_model=5.06722	log10_strand_likelihood_position_model=0.830407	new_cov=2/5	polymorphism_quality=13.8	quality=13.8	quality_position_model=2.65089e-15	ref_cov=129/118	tot_cov=131/123
RA	2189	.	NC_007779	2801063	0	C	A	bias_e_value=2652310	bias_p_value=0.570839	fisher_strand_p_value=0.26904	frequency=2.726841e-02	genotype_quality=1040.4	ks_quality_p_value=0.862027	log10_base_likelihood=-16.6921	log10_qual_likelihood_position_model=4.3502	log10_strand_likelihood_position_model=0.830031	new_cov=2/5	polymorphism_quality=11.4	quality=11.4	quality_position_model=1.43822e-13	ref_cov=130/119	tot_cov=132/124
RA	2190	.	NC_007779	2801065	0	G	C	bias_e_value=2096790	bias_p_value=0.451278	fisher_strand_p_value=0.260214	frequency=2.754307e-02	genotype_quality=1028.2	ks_quality_p_value=0.610829	log10_base_likelihood=-19.1265	log10_qual_likelihood_position_model=3.53594	log10_strand_likelihood_position_model=0.86519	new_cov=2/5	polymorphism_quality=13.8	quality=13.8	quality_position_model=7.80762e-17	ref_cov=132/115	tot_cov=134/120
RA	2191	.	NC_007779	2801068	0	A	T	bias_e_value=2707190	bias_p_value=0.582652	fisher_strand_p_value=0.270441	frequency=2.763748e-02	genotype_quality=966.7	ks_quality_p_value=0.887812	log10_base_likelihood=-17.6879	log10_qual_likelihood_position_model=4.78281	log10_strand_likelihood_position_model=0.824952	new_cov=2/5	polymorphism_quality=12.4	quality=12.4	quality_position_model=3.797e-14	ref_cov=128/118	tot_cov=130/123
RA	2192	.	NC_007779	2801071	0	A	G	bias_e_value=2781960	bias_p_value=0.598743	fisher_strand_p_value=0.264417	frequency=2.737331e-02	genotype_quality=963.2	ks_quality_p_value=0.95141	log10_base_likelihood=-14.8749	log10_qual_likelihood_position_model=3.87066	log10_strand_likelihood_position_model=0.847308	new_cov=2/5	polymorphism_quality=9.5	quality=9.5	quality_position_model=3.45903e-12	ref_cov=131/117	tot_cov=133/122
RA	2193	.	NC_007779	2801074	0	C	T	bias_e_value=2339810	bias_p_value=0.503582	fisher_strand_p_value=0.273952	frequency=2.737236e-02	genotype_quality=1008.0	ks_quality_p_value=0.689259	log10_base_likelihood=-14.4985	log10_qual_likelihood_position_model=3.34587	log10_strand_likelihood_position_model=0.813574	new_cov=2/5	polymorphism_quality=9.1	quality=9.1	quality_position_model=2.25486e-12	ref_cov=128/120	tot_cov=130/125
RA	2194	.	NC_007779	2801092	0	T	C	bias_e_value=7949.34	bias_p_value=0.00171088	fisher_strand_p_value=0.800971	frequency=6.429482e-02	genotype_quality=838.7	ks_quality_p_value=0.000221664	log10_base_likelihood=-41.2679	log10_qual_likelihood_position_model=9.54657	log10_strand_likelihood_position_model=0.711199	new_cov=9/7	polymorphism_quality=36.1	quality=36.1	quality_position_model=2.81339e-33	ref_cov=121/111	reject=KS_QUALITY_P_VALUE	tot_cov=130/118
RA	2195	.	NC_007779	2801095	0	C	G	bias_e_value=373475	bias_p_value=0.0803806	fisher_strand_p_value=0.800338	frequency=6.474543e-02	genotype_quality=969.9	ks_quality_p_value=0.0194548	log10_base_likelihood=-46.962	log10_qual_likelihood_position_model=9.69155	log10_strand_likelihood_position_model=0.713394	new_cov=9/7	polymorphism_quality=41.9	quality=41.9	quality_position_model=7.36235e-39	ref_cov=120/111	tot_cov=129/118
RA	2196	.	NC_007779	2801106	0	A	T	bias_e_value=192763	bias_p_value=0.041487	fisher_strand_p_value=0.79924	frequency=6.422901e-02	genotype_quality=901.1	ks_quality_p_value=0.00869636	log10_base_likelihood=-47.1283	log10_qual_likelihood_position_model=7.5895	log10_strand_likelihood_position_model=0.718769	new_cov=9/7	polymorphism_quality=42.0	quality=42.0	quality_position_model=3.90076e-41	ref_cov=120/113	reject=SURROUNDING_HOMOPOLYMER	tot_cov=129/120
RA	2197	.	NC_007779	2801107	0	T	C	bias_e_value=80227	bias_p_value=0.0172667	fisher_strand_p_value=0.617353	frequency=6.847811e-02	genotype_quality=825.5	ks_quality_p_value=0.00399232	log10_base_likelihood=-45.4322	log10_qual_likelihood_position_model=8.63868	log10_strand_likelihood_position_model=0.80023	new_cov=10/7	polymorphism_quality=40.3	quality=40.3	quality_position_model=2.71719e-38	ref_cov=116/115	tot_cov=126/122
RA	2198	.	NC_007779	2801110	0	A	G	bias_e_value=215873	bias_p_value=0.046461	fisher_strand_p_value=0.796975	frequency=6.445980e-02	genotype_quality=850.7	ks_quality_p_value=0.00999497	log10_base_likelihood=-42.2577	log10_qual_likelihood_position_model=7.75489	log10_strand_likelihood_position_model=0.74733	new_cov=9/7	polymorphism_quality=37.1	quality=37.1	quality_position_model=4.84955e-36	ref_cov=115/117	tot_cov=124/124
RA	2199	.	NC_007779	2801119	0	A	T	bias_e_value=2384430	bias_p_value=0.513185	fisher_strand_p_value=0.447548	frequency=6.628895e-02	genotype_quality=891.3	ks_quality_p_value=0.434898	log10_base_likelihood=-43.6092	log10_qual_likelihood_position_model=8.10533	log10_strand_likelihood_position_model=0.830903	new_cov=9/7	polymorphism_quality=38.5	quality=38.5	quality_position_model=5.78702e-37	ref_cov=103/122	tot_cov=112/129
RA	2200	.	NC_007779	2801125	0	T	C	bias_e_value=1322730	bias_p_value=0.284682	fisher_strand_p_value=0.441646	frequency=6.572342e-02	genotype_quality=822.6	ks_quality_p_value=0.183499	log10_base_likelihood=-39.9427	log10_qual_likelihood_position_model=9.63169	log10_strand_likelihood_position_model=0.855019	new_cov=9/7	polymorphism_quality=34.8	quality=34.8	quality_position_model=1.03367e-31	ref_cov=102/125	tot_cov=111/132
RA	2201	.	NC_007779	2801128	0	T	G	bias_e_value=3726080	bias_p_value=0.801939	fisher_strand_p_value=0.444905	frequency=6.528378e-02	genotype_quality=863.0	ks_quality_p_value=0.990916	log10_base_likelihood=-50.3737	log10_qual_likelihood_position_model=7.67611	log10_strand_likelihood_position_model=0.841379	new_cov=9/7	polymorphism_quality=45.3	quality=45.3	quality_position_model=3.4577e-44	ref_cov=104/125	tot_cov=113/132
RA	2202	.	NC_007779	2801134	0	T	G	bias_e_value=1610990	bias_p_value=0.346723	fisher_strand_p_value=0.118942	frequency=4.601669e-02	genotype_quality=877.8	ks_quality_p_value=0.901807	log10_base_likelihood=-32.4666	log10_qual_likelihood_position_model=5.76887	log10_strand_likelihood_position_model=1.28159	new_cov=8/3	polymorphism_quality=27.3	quality=27.3	quality_position_model=1.21835e-27	ref_cov=103/125	tot_cov=111/128
RA	2203	.	NC_007779	2801137	0	C	T	bias_e_value=1308010	bias_p_value=0.281515	fisher_strand_p_value=0.08374	frequency=3.795433e-02	genotype_quality=916.3	ks_quality_p_value=0.952768	log10_base_likelihood=-19.6603	log10_qual_likelihood_position_model=4.85378	log10_strand_likelihood_position_model=1.37406	new_cov=7/2	polymorphism_quality=14.4	quality=14.4	quality_position_model=1.60254e-15	ref_cov=101/126	tot_cov=108/129
RA	2204	.	NC_007779	2801139	0	C	A	bias_e_value=997829	bias_p_value=0.214756	fisher_strand_p_value=0.0840383	frequency=3.841305e-02	genotype_quality=939.3	ks_quality_p_value=0.65542	log10_base_likelihood=-18.9554	log10_qual_likelihood_position_model=8.36716	log10_strand_likelihood_position_model=1.36602	new_cov=7/2	polymorphism_quality=13.7	quality=13.7	quality_position_model=3.11731e-11	ref_cov=100/124	tot_cov=108/126
RA	2205	.	NC_007779	2801140	0	C	G	bias_e_value=1058540	bias_p_value=0.227822	fisher_strand_p_value=0.0846562	frequency=3.844929e-02	genotype_quality=942.2	ks_quality_p_value=0.704628	log10_base_likelihood=-25.0205	log10_qual_likelihood_position_model=6.29784	log10_strand_likelihood_position_model=1.35395	new_cov=7/2	polymorphism_quality=19.8	quality=19.8	quality_position_model=1.63769e-19	ref_cov=101/124	tot_cov=108/126
RA	2206	.	NC_007779	2801143	0	G	C	bias_e_value=1347800	bias_p_value=0.290078	fisher_strand_p_value=0.0832002	frequency=4.041481e-02	genotype_quality=886.7	ks_quality_p_value=1	log10_base_likelihood=-21.6419	log10_qual_likelihood_position_model=6.14347	log10_strand_likelihood_position_model=1.37888	new_cov=7/2	polymorphism_quality=16.4	quality=16.4	quality_position_model=3.21519e-16	ref_cov=94/118	tot_cov=101/120
RA	2207	.	NC_007779	2801149	0	A	T	bias_e_value=1346780	bias_p_value=0.289859	fisher_strand_p_value=0.083225	frequency=3.820610e-02	genotype_quality=908.0	ks_quality_p_value=0.998645	log10_base_likelihood=-21.7237	log10_qual_likelihood_position_model=7.2329	log10_strand_likelihood_position_model=1.38628	new_cov=7/2	polymorphism_quality=16.5	quality=16.5	quality_position_model=3.45105e-15	ref_cov=100/126	tot_cov=107/128
RA	2208	.	NC_007779	2801152	0	T	C	bias_e_value=1288380	bias_p_value=0.277289	fisher_strand_p_value=0.0825244	frequency=3.905964e-02	genotype_quality=836.8	ks_quality_p_value=0.946636	log10_base_likelihood=-20.7463	log10_qual_likelihood_position_model=5.50782	log10_strand_likelihood_position_model=1.40348	new_cov=7/2	polymorphism_quality=15.5	quality=15.5	quality_position_model=6.25242e-16	ref_cov=97/124	tot_cov=104/126
RA	2209	.	NC_007779	2801156	0	A	T	bias_e_value=1339830	bias_p_value=0.288364	fisher_strand_p_value=0.0827663	frequency=3.835773e-02	genotype_quality=894.2	ks_quality_p_value=0.996928	log10_base_likelihood=-21.5586	log10_qual_likelihood_position_model=6.12798	log10_strand_likelihood_position_model=1.3987	new_cov=7/2	polymorphism_quality=16.3	quality=16.3	quality_position_model=3.94592e-16	ref_cov=99/126	tot_cov=106/128
RA	2210	.	NC_007779	2801157	0	G	C	bias_e_value=1333080	bias_p_value=0.286909	fisher_strand_p_value=0.0826455	frequency=3.874111e-02	genotype_quality=939.7	ks_quality_p_value=0.99134	log10_base_likelihood=-22.7958	log10_qual_likelihood_position_model=5.32497	log10_strand_likelihood_position_model=1.40107	new_cov=7/2	polymorphism_quality=17.5	quality=17.5	quality_position_model=3.38571e-18	ref_cov=98/125	tot_cov=105/127
RA	2211	.	NC_007779	2801158	0	T	G	bias_e_value=1299620	bias_p_value=0.279709	fisher_strand_p_value=0.0830981	frequency=3.860569e-02	genotype_quality=866.7	ks_quality_p_value=0.95155	log10_base_likelihood=-24.8534	log10_qual_likelihood_position_model=7.78987	log10_strand_likelihood_position_model=1.38851	new_cov=7/2	polymorphism_quality=19.6	quality=19.6	quality_position_model=8.50468e-18	ref_cov=99/125	tot_cov=106/127
RA	2212	.	NC_007779	2801161	0	T	C	bias_e_value=1304190	bias_p_value=0.280693	fisher_strand_p_value=0.0820689	frequency=4.136181e-02	genotype_quality=788.2	ks_quality_p_value=0.968214	log10_base_likelihood=-19.6559	log10_qual_likelihood_position_model=5.85562	log10_strand_likelihood_position_model=1.40801	new_cov=7/2	polymorphism_quality=14.4	quality=14.4	quality_position_model=1.82788e-14	ref_cov=91/117	tot_cov=98/119
RA	2213	.	NC_007779	2802025	0	C	T	bias_e_value=1331160	bias_p_value=0.286497	fisher_strand_p_value=0.119417	frequency=3.637314e-02	genotype_quality=743.4	ks_quality_p_value=0.684701	log10_base_likelihood=-15.3504	log10_qual_likelihood_position_model=4.34343	log10_strand_likelihood_position_model=1.21473	new_cov=1/6	polymorphism_quality=10.0	quality=10.0	quality_position_model=8.15216e-12	ref_cov=92/93	reject=POLYMORPHISM_STRAND	tot_cov=93/99
RA	2214	.	NC_007779	2802028	0	T	C	bias_e_value=1346460	bias_p_value=0.289791	fisher_strand_p_value=0.119372	frequency=3.679943e-02	genotype_quality=691.4	ks_quality_p_value=0.696017	log10_base_likelihood=-16.9246	log10_qual_likelihood_position_model=5.31651	log10_strand_likelihood_position_model=1.21423	new_cov=1/6	polymorphism_quality=11.6	quality=11.6	quality_position_model=1.98248e-12	ref_cov=91/92	reject=POLYMORPHISM_STRAND	tot_cov=92/98
RA	2215	.	NC_007779	2802029	0	A	C	bias_e_value=1515530	bias_p_value=0.326179	fisher_strand_p_value=0.119372	frequency=3.683090e-02	genotype_quality=727.2	ks_quality_p_value=0.822933	log10_base_likelihood=-20.8411	log10_qual_likelihood_position_model=4.49613	log10_strand_likelihood_position_model=1.21423	new_cov=1/6	polymorphism_quality=15.6	quality=15.6	quality_position_model=3.02978e-17	ref_cov=91/92	reject=POLYMORPHISM_STRAND	tot_cov=92/98
RA	2216	.	NC_007779	2802035	0	A	C	bias_e_value=1714610	bias_p_value=0.369025	fisher_strand_p_value=0.119829	frequency=3.702545e-02	genotype_quality=733.4	ks_quality_p_value=0.980255	log10_base_likelihood=-20.8835	log10_qual_likelihood_position_model=3.30852	log10_strand_likelihood_position_model=1.20267	new_cov=1/6	polymorphism_quality=15.6	quality=15.6	quality_position_model=1.67169e-18	ref_cov=90/92	reject=POLYMORPHISM_STRAND	tot_cov=91/98
RA	2217	.	NC_007779	2802036	0	A	G	bias_e_value=1720810	bias_p_value=0.370358	fisher_strand_p_value=0.119829	frequency=3.696251e-02	genotype_quality=715.6	ks_quality_p_value=0.985455	log10_base_likelihood=-15.8963	log10_qual_likelihood_position_model=2.91754	log10_strand_likelihood_position_model=1.20267	new_cov=1/6	polymorphism_quality=10.6	quality=10.6	quality_position_model=7.74192e-14	ref_cov=90/92	reject=POLYMORPHISM_STRAND	tot_cov=91/98
RA	2218	.	NC_007779	2802037	0	A	T	bias_e_value=1709320	bias_p_value=0.367887	fisher_strand_p_value=0.120491	frequency=3.532600e-02	genotype_quality=768.4	ks_quality_p_value=0.970459	log10_base_likelihood=-18.5775	log10_qual_likelihood_position_model=3.81339	log10_strand_likelihood_position_model=1.19464	new_cov=1/6	polymorphism_quality=13.3	quality=13.3	quality_position_model=1.16323e-15	ref_cov=94/97	reject=POLYMORPHISM_STRAND	tot_cov=95/103
RA	2219	.	NC_007779	2802052	0	C	A	bias_e_value=4562380	bias_p_value=0.981931	fisher_strand_p_value=1	frequency=7.414818e-02	genotype_quality=786.3	ks_quality_p_value=0.816022	log10_base_likelihood=-39.4821	log10_qual_likelihood_position_model=5.35728	log10_strand_likelihood_position_model=0.680555	new_cov=8/7	polymorphism_quality=34.3	quality=34.3	quality_position_model=9.97459e-36	ref_cov=96/91	tot_cov=104/98
RA	2220	.	NC_007779	2802067	0	C	T	bias_e_value=4560930	bias_p_value=0.981619	fisher_strand_p_value=1	frequency=6.998014e-02	genotype_quality=769.6	ks_quality_p_value=0.814494	log10_base_likelihood=-35.4638	log10_qual_likelihood_position_model=6.64006	log10_strand_likelihood_position_model=0.687097	new_cov=8/7	polymorphism_quality=30.3	quality=30.3	quality_position_model=2.20564e-30	ref_cov=112/87	tot_cov=120/94
RA	2221	.	NC_007779	2802070	0	A	G	bias_e_value=2495550	bias_p_value=0.537101	fisher_strand_p_value=0.793147	frequency=7.201004e-02	genotype_quality=705.0	ks_quality_p_value=0.264255	log10_base_likelihood=-38.6321	log10_qual_likelihood_position_model=7.54071	log10_strand_likelihood_position_model=0.692308	new_cov=8/7	polymorphism_quality=33.5	quality=33.5	quality_position_model=1.16022e-32	ref_cov=110/83	tot_cov=118/90
RA	2222	.	NC_007779	2802073	0	G	T	bias_e_value=580662	bias_p_value=0.124972	fisher_strand_p_value=1	frequency=6.903648e-02	genotype_quality=843.0	ks_quality_p_value=0.0271247	log10_base_likelihood=-38.6181	log10_qual_likelihood_position_model=8.20349	log10_strand_likelihood_position_model=0.688468	new_cov=8/7	polymorphism_quality=33.5	quality=33.5	quality_position_model=5.5242e-32	ref_cov=114/88	tot_cov=122/96
RA	2223	.	NC_007779	2802076	0	C	G	bias_e_value=156089	bias_p_value=0.0335941	fisher_strand_p_value=0.79444	frequency=7.223988e-02	genotype_quality=808.0	ks_quality_p_value=0.00679694	log10_base_likelihood=-45.2432	log10_qual_likelihood_position_model=8.22578	log10_strand_likelihood_position_model=0.68989	new_cov=8/7	polymorphism_quality=40.1	quality=40.1	quality_position_model=1.25285e-38	ref_cov=110/84	tot_cov=118/92
RA	2224	.	NC_007779	2802079	0	T	C	bias_e_value=1287750	bias_p_value=0.277153	fisher_strand_p_value=1	frequency=7.126713e-02	genotype_quality=718.5	ks_quality_p_value=0.0780674	log10_base_likelihood=-36.2732	log10_qual_likelihood_position_model=10.9895	log10_strand_likelihood_position_model=0.684211	new_cov=8/7	polymorphism_quality=31.1	quality=31.1	quality_position_model=8.11766e-27	ref_cov=109/86	tot_cov=117/93
RA	2225	.	NC_007779	2802098	0	A	G	bias_e_value=933326	bias_p_value=0.200874	fisher_strand_p_value=0.789436	frequency=7.025290e-02	genotype_quality=731.2	ks_quality_p_value=0.0637966	log10_base_likelihood=-40.2295	log10_qual_likelihood_position_model=5.85256	log10_strand_likelihood_position_model=0.703891	new_cov=8/7	polymorphism_quality=35.1	quality=35.1	quality_position_model=5.87016e-36	ref_cov=115/83	tot_cov=124/90
RA	2226	.	NC_007779	2802100	0	G	T	bias_e_value=2418540	bias_p_value=0.520527	fisher_strand_p_value=0.792283	frequency=7.169151e-02	genotype_quality=827.4	ks_quality_p_value=0.251369	log10_base_likelihood=-39.1403	log10_qual_likelihood_position_model=6.83556	log10_strand_likelihood_position_model=0.694428	new_cov=8/7	polymorphism_quality=34.0	quality=34.0	quality_position_model=6.99745e-34	ref_cov=111/83	tot_cov=119/90
RA	2227	.	NC_007779	2802109	0	A	G	bias_e_value=4646220	bias_p_value=0.999976	fisher_strand_p_value=1	frequency=7.306004e-02	genotype_quality=707.2	ks_quality_p_value=0.993092	log10_base_likelihood=-39.1631	log10_qual_likelihood_position_model=8.51215	log10_strand_likelihood_position_model=0.683134	new_cov=8/7	polymorphism_quality=34.0	quality=34.0	quality_position_model=3.15405e-32	ref_cov=106/84	tot_cov=114/91
RA	2228	.	NC_007779	2802112	0	C	T	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=6.680393e-02	genotype_quality=755.8	ks_quality_p_value=0.999285	log10_base_likelihood=-24.0615	log10_qual_likelihood_position_model=14.0236	log10_strand_likelihood_position_model=0.671287	new_cov=8/6	polymorphism_quality=18.8	quality=18.8	quality_position_model=2.21912e-11	ref_cov=103/88	tot_cov=111/94
RA	2229	.	NC_007779	2802118	0	A	G	bias_e_value=1151670	bias_p_value=0.247866	fisher_strand_p_value=0.0688374	frequency=4.119110e-02	genotype_quality=714.2	ks_quality_p_value=0.972021	log10_base_likelihood=-19.7304	log10_qual_likelihood_position_model=5.18762	log10_strand_likelihood_position_model=1.37739	new_cov=7/1	polymorphism_quality=14.4	quality=14.4	quality_position_model=2.99294e-15	ref_cov=96/90	reject=POLYMORPHISM_STRAND	tot_cov=103/91
RA	2230	.	NC_007779	2802119	0	A	G	bias_e_value=1172330	bias_p_value=0.252313	fisher_strand_p_value=0.0688374	frequency=4.112053e-02	genotype_quality=717.8	ks_quality_p_value=0.996017	log10_base_likelihood=-17.5056	log10_qual_likelihood_position_model=8.81355	log10_strand_likelihood_position_model=1.37739	new_cov=7/1	polymorphism_quality=12.2	quality=12.2	quality_position_model=2.81375e-09	ref_cov=96/90	reject=POLYMORPHISM_STRAND	tot_cov=103/91
RA	2231	.	NC_007779	2802121	0	T	C	bias_e_value=1169680	bias_p_value=0.251743	fisher_strand_p_value=0.0688374	frequency=4.115295e-02	genotype_quality=721.0	ks_quality_p_value=0.992931	log10_base_likelihood=-18.0453	log10_qual_likelihood_position_model=5.71345	log10_strand_likelihood_position_model=1.37739	new_cov=7/1	polymorphism_quality=12.7	quality=12.7	quality_position_model=5.31643e-13	ref_cov=96/90	reject=POLYMORPHISM_STRAND	tot_cov=103/91
RA	2232	.	NC_007779	2802124	0	A	G	bias_e_value=1191940	bias_p_value=0.256534	fisher_strand_p_value=0.0701743	frequency=3.987980e-02	genotype_quality=739.5	ks_quality_p_value=0.999583	log10_base_likelihood=-17.4052	log10_qual_likelihood_position_model=6.54254	log10_strand_likelihood_position_model=1.35642	new_cov=7/1	polymorphism_quality=12.1	quality=12.1	quality_position_model=1.59752e-11	ref_cov=100/92	reject=POLYMORPHISM_STRAND	tot_cov=107/93
RA	2233	.	NC_007779	2802127	0	C	T	bias_e_value=1232100	bias_p_value=0.265177	fisher_strand_p_value=0.0734263	frequency=3.860569e-02	genotype_quality=793.6	ks_quality_p_value=1	log10_base_likelihood=-12.8639	log10_qual_likelihood_position_model=9.11751	log10_strand_likelihood_position_model=1.31167	new_cov=7/1	polymorphism_quality=7.5	quality=7.5	quality_position_model=0.000353039	ref_cov=104/92	reject=POLYMORPHISM_STRAND	tot_cov=111/93
RA	2234	.	NC_007779	2802133	0	C	A	bias_e_value=1838030	bias_p_value=0.395587	fisher_strand_p_value=0.130223	frequency=3.461456e-02	genotype_quality=811.1	ks_quality_p_value=0.999641	log10_base_likelihood=-13.6396	log10_qual_likelihood_position_model=5.21968	log10_strand_likelihood_position_model=1.08424	new_cov=6/1	polymorphism_quality=8.3	quality=8.3	quality_position_model=2.67722e-09	ref_cov=104/90	reject=POLYMORPHISM_STRAND	tot_cov=110/91
RA	2235	.	NC_007779	2802195	0	A	C	bias_e_value=1931790	bias_p_value=0.415768	fisher_strand_p_value=0.141958	frequency=7.894182e-02	genotype_quality=776.3	ks_quality_p_value=0.988042	log10_base_likelihood=-60.4218	log10_qual_likelihood_position_model=11.4121	log10_strand_likelihood_position_model=1.24619	new_cov=6/12	polymorphism_quality=55.4	quality=55.4	quality_position_model=4.00934e-50	ref_cov=111/99	tot_cov=117/111
RA	2236	.	NC_007779	2802199	0	A	T	bias_e_value=1861610	bias_p_value=0.400662	fisher_strand_p_value=0.139096	frequency=7.822371e-02	genotype_quality=847.9	ks_quality_p_value=0.953847	log10_base_likelihood=-52.241	log10_qual_likelihood_position_model=8.533	log10_strand_likelihood_position_model=1.29941	new_cov=6/12	polymorphism_quality=47.2	quality=47.2	quality_position_model=9.62923e-45	ref_cov=114/98	reject=SURROUNDING_HOMOPOLYMER	tot_cov=120/110
RA	2237	.	NC_007779	2802200	0	T	C	bias_e_value=1917380	bias_p_value=0.412666	fisher_strand_p_value=0.139096	frequency=7.818365e-02	genotype_quality=781.8	ks_quality_p_value=0.997051	log10_base_likelihood=-48.676	log10_qual_likelihood_position_model=8.8676	log10_strand_likelihood_position_model=1.29941	new_cov=6/12	polymorphism_quality=43.6	quality=43.6	quality_position_model=8.01521e-41	ref_cov=114/98	tot_cov=120/110
RA	2238	.	NC_007779	2802205	0	C	T	bias_e_value=1918150	bias_p_value=0.412831	fisher_strand_p_value=0.139646	frequency=7.608700e-02	genotype_quality=855.7	ks_quality_p_value=0.993722	log10_base_likelihood=-40.2414	log10_qual_likelihood_position_model=13.1786	log10_strand_likelihood_position_model=1.29509	new_cov=6/12	polymorphism_quality=35.1	quality=35.1	quality_position_model=5.38632e-28	ref_cov=117/101	tot_cov=123/113
RA	2239	.	NC_007779	2802208	0	T	C	bias_e_value=1717610	bias_p_value=0.36967	fisher_strand_p_value=0.140002	frequency=7.496452e-02	genotype_quality=815.5	ks_quality_p_value=0.84116	log10_base_likelihood=-49.1288	log10_qual_likelihood_position_model=6.89152	log10_strand_likelihood_position_model=1.29234	new_cov=6/12	polymorphism_quality=44.0	quality=44.0	quality_position_model=2.84961e-43	ref_cov=119/103	tot_cov=125/115
RA	2240	.	NC_007779	2802211	0	A	G	bias_e_value=1918650	bias_p_value=0.412938	fisher_strand_p_value=0.138921	frequency=7.688665e-02	genotype_quality=794.5	ks_quality_p_value=0.999301	log10_base_likelihood=-45.884	log10_qual_likelihood_position_model=12.3742	log10_strand_likelihood_position_model=1.3223	new_cov=6/12	polymorphism_quality=40.8	quality=40.8	quality_position_model=1.83619e-34	ref_cov=118/100	tot_cov=124/113
RA	2241	.	NC_007779	2802217	0	G	C	bias_e_value=1360430	bias_p_value=0.292797	fisher_strand_p_value=0.0863186	frequency=7.402229e-02	genotype_quality=950.6	ks_quality_p_value=0.976575	log10_base_likelihood=-51.5806	log10_qual_likelihood_position_model=9.53988	log10_strand_likelihood_position_model=1.41334	new_cov=6/12	polymorphism_quality=46.5	quality=46.5	quality_position_model=5.94325e-43	ref_cov=125/100	tot_cov=131/112
RA	2242	.	NC_007779	2802223	0	G	T	bias_e_value=926716	bias_p_value=0.199451	fisher_strand_p_value=0.0892251	frequency=7.492590e-02	genotype_quality=906.3	ks_quality_p_value=0.559125	log10_base_likelihood=-44.8231	log10_qual_likelihood_position_model=6.19829	log10_strand_likelihood_position_model=1.37421	new_cov=6/12	polymorphism_quality=39.7	quality=39.7	quality_position_model=1.47718e-39	ref_cov=122/100	reject=SURROUNDING_HOMOPOLYMER	tot_cov=128/112
RA	2243	.	NC_007779	2802227	0	A	G	bias_e_value=1681290	bias_p_value=0.361854	fisher_strand_p_value=0.140521	frequency=7.307625e-02	genotype_quality=841.1	ks_quality_p_value=0.81224	log10_base_likelihood=-44.176	log10_qual_likelihood_position_model=9.16016	log10_strand_likelihood_position_model=1.28841	new_cov=6/12	polymorphism_quality=39.1	quality=39.1	quality_position_model=5.1752e-36	ref_cov=122/106	tot_cov=128/118
RA	2244	.	NC_007779	2802232	0	C	T	bias_e_value=586063	bias_p_value=0.126135	fisher_strand_p_value=0.143481	frequency=7.367277e-02	genotype_quality=878.0	ks_quality_p_value=0.191298	log10_base_likelihood=-43.598	log10_qual_likelihood_position_model=8.46373	log10_strand_likelihood_position_model=1.23917	new_cov=6/12	polymorphism_quality=38.5	quality=38.5	quality_position_model=3.50908e-36	ref_cov=119/107	tot_cov=125/119
RA	2245	.	NC_007779	2802239	0	A	G	bias_e_value=6808.31	bias_p_value=0.00146531	fisher_strand_p_value=0.142359	frequency=7.135677e-02	genotype_quality=864.0	ks_quality_p_value=0.00104935	log10_base_likelihood=-48.2501	log10_qual_likelihood_position_model=8.64357	log10_strand_likelihood_position_model=1.26009	new_cov=6/12	polymorphism_quality=43.2	quality=43.2	quality_position_model=1.16779e-40	ref_cov=124/110	tot_cov=130/122
RA	2246	.	NC_007779	2802241	0	C	T	bias_e_value=94612	bias_p_value=0.0203627	fisher_strand_p_value=0.142044	frequency=6.991577e-02	genotype_quality=922.1	ks_quality_p_value=0.0210419	log10_base_likelihood=-42.0748	log10_qual_likelihood_position_model=9.44299	log10_strand_likelihood_position_model=1.26965	new_cov=6/12	polymorphism_quality=37.0	quality=37.0	quality_position_model=1.2439e-33	ref_cov=127/112	tot_cov=133/124
RA	2247	.	NC_007779	2802244	0	T	C	bias_e_value=153559	bias_p_value=0.0330495	fisher_strand_p_value=0.141345	frequency=7.022238e-02	genotype_quality=879.9	ks_quality_p_value=0.037466	log10_base_likelihood=-47.5629	log10_qual_likelihood_position_model=9.40649	log10_strand_likelihood_position_model=1.28232	new_cov=6/12	polymorphism_quality=42.5	quality=42.5	quality_position_model=3.53285e-39	ref_cov=127/111	tot_cov=133/123
RA	2248	.	NC_007779	2802247	0	C	T	bias_e_value=43322.5	bias_p_value=0.00932403	fisher_strand_p_value=0.145345	frequency=7.104588e-02	genotype_quality=920.2	ks_quality_p_value=0.00831097	log10_base_likelihood=-43.4962	log10_qual_likelihood_position_model=8.00615	log10_strand_likelihood_position_model=1.22387	new_cov=6/12	polymorphism_quality=38.4	quality=38.4	quality_position_model=1.48521e-36	ref_cov=123/112	reject=SURROUNDING_HOMOPOLYMER	tot_cov=129/124
RA	2249	.	NC_007779	2802251	0	C	T	bias_e_value=412422	bias_p_value=0.0887629	fisher_strand_p_value=0.150865	frequency=7.104492e-02	genotype_quality=915.3	ks_quality_p_value=0.116761	log10_base_likelihood=-43.5561	log10_qual_likelihood_position_model=9.15755	log10_strand_likelihood_position_model=1.17811	new_cov=6/12	polymorphism_quality=38.4	quality=38.4	quality_position_model=1.67558e-35	ref_cov=121/114	tot_cov=127/126
RA	2250	.	NC_007779	2802253	0	A	G	bias_e_value=967947	bias_p_value=0.208325	fisher_strand_p_value=0.150865	frequency=7.108307e-02	genotype_quality=845.9	ks_quality_p_value=0.350493	log10_base_likelihood=-46.173	log10_qual_likelihood_position_model=8.38754	log10_strand_likelihood_position_model=1.17811	new_cov=6/12	polymorphism_quality=41.1	quality=41.1	quality_position_model=6.55279e-39	ref_cov=121/114	tot_cov=127/126
RA	2251	.	NC_007779	2802256	0	A	G	bias_e_value=998842	bias_p_value=0.214974	fisher_strand_p_value=0.130948	frequency=6.583357e-02	genotype_quality=902.6	ks_quality_p_value=0.421201	log10_base_likelihood=-44.4029	log10_qual_likelihood_position_model=5.33738	log10_strand_likelihood_position_model=1.30585	new_cov=5/12	polymorphism_quality=39.3	quality=39.3	quality_position_model=4.54421e-40	ref_cov=122/119	tot_cov=127/131
RA	2252	.	NC_007779	2802277	0	C	T	bias_e_value=1317470	bias_p_value=0.283551	fisher_strand_p_value=0.163525	frequency=5.343103e-02	genotype_quality=898.8	ks_quality_p_value=0.492841	log10_base_likelihood=-30.9512	log10_qual_likelihood_position_model=6.60733	log10_strand_likelihood_position_model=1.09933	new_cov=4/9	polymorphism_quality=25.8	quality=25.8	quality_position_model=1.8899e-25	ref_cov=119/111	tot_cov=123/120
RA	2253	.	NC_007779	2809781	0	A	.	bias_e_value=1637380	bias_p_value=0.352403	fisher_strand_p_value=1	frequency=1.332283e-02	genotype_quality=887.3	ks_quality_p_value=0.10982	log10_base_likelihood=-7.99341	log10_qual_likelihood_position_model=2.88294	log10_strand_likelihood_position_model=0.402411	new_cov=2/1	polymorphism_quality=2.5	quality=2.5	quality_position_model=1.39797e-06	ref_cov=116/105	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=119/106
RA	2254	.	NC_007779	2815240	1	.	A	bias_e_value=4133840	bias_p_value=0.8897	fisher_strand_p_value=0.607043	frequency=1.477814e-02	genotype_quality=975.7	ks_quality_p_value=0.936906	log10_base_likelihood=-12.8948	log10_qual_likelihood_position_model=2.62695	log10_strand_likelihood_position_model=0.444573	new_cov=1/2	polymorphism_quality=7.5	quality=7.5	quality_position_model=7.5783e-12	ref_cov=105/95	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=106/97
RA	2255	.	NC_007779	2816615	0	G	C	bias_e_value=6.89179e-12	bias_p_value=1.48328e-18	fisher_strand_p_value=3.94734e-20	frequency=2.016411e-01	genotype_quality=457.0	ks_quality_p_value=0.81905	log10_base_likelihood=-50.0282	log10_qual_likelihood_position_model=29.4156	log10_strand_likelihood_position_model=19.4037	new_cov=36/0	polymorphism_quality=44.9	quality=44.9	quality_position_model=0.00802013	ref_cov=27/108	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=63/108
RA	2256	.	NC_007779	2817030	0	G	C	bias_e_value=4.97857e-20	bias_p_value=1.07151e-26	fisher_strand_p_value=1.72187e-28	frequency=2.069721e-01	genotype_quality=590.6	ks_quality_p_value=0.95778	log10_base_likelihood=-68.0515	log10_qual_likelihood_position_model=35.31	log10_strand_likelihood_position_model=27.764	new_cov=44/0	polymorphism_quality=63.0	quality=63.0	quality_position_model=7.32633e-07	ref_cov=22/138	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=66/138
RA	2257	.	NC_007779	2820080	1	.	C	bias_e_value=3915260	bias_p_value=0.842655	fisher_strand_p_value=1	frequency=1.183414e-02	genotype_quality=815.5	ks_quality_p_value=0.494393	log10_base_likelihood=-8.07156	log10_qual_likelihood_position_model=1.55557	log10_strand_likelihood_position_model=0.298833	new_cov=1/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=3.80293e-08	ref_cov=81/86	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=82/87
RA	2258	.	NC_007779	2833875	0	A	C	bias_e_value=0.00131107	bias_p_value=2.82172e-10	fisher_strand_p_value=1.07468e-11	frequency=7.776690e-02	genotype_quality=576.3	ks_quality_p_value=1	log10_base_likelihood=-11.3228	log10_qual_likelihood_position_model=25.0747	log10_strand_likelihood_position_model=10.9687	new_cov=0/27	polymorphism_quality=5.9	quality=5.9	quality_position_model=Inf	ref_cov=109/57	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=109/84
RA	2259	.	NC_007779	2833904	0	A	C	bias_e_value=2.49148e-08	bias_p_value=5.36226e-15	fisher_strand_p_value=1.43057e-16	frequency=7.515717e-02	genotype_quality=562.9	ks_quality_p_value=1	log10_base_likelihood=-5.97141	log10_qual_likelihood_position_model=25.5538	log10_strand_likelihood_position_model=15.8445	new_cov=0/39	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=119/58	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=119/98
RA	2260	.	NC_007779	2833989	0	A	C	bias_e_value=0.00160907	bias_p_value=3.46309e-10	fisher_strand_p_value=1.32973e-11	frequency=5.533123e-02	genotype_quality=507.9	ks_quality_p_value=1	log10_base_likelihood=-7.35361	log10_qual_likelihood_position_model=16.4052	log10_strand_likelihood_position_model=10.8762	new_cov=0/12	polymorphism_quality=1.9	quality=1.9	quality_position_model=Inf	ref_cov=128/12	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=128/24
RA	2261	.	NC_007779	2839296	0	A	G	bias_e_value=0.102138	bias_p_value=2.19826e-08	fisher_strand_p_value=1.02069e-09	frequency=6.370926e-02	genotype_quality=587.5	ks_quality_p_value=0.991991	log10_base_likelihood=-8.41729	log10_qual_likelihood_position_model=15.1801	log10_strand_likelihood_position_model=8.9911	new_cov=12/0	polymorphism_quality=2.9	quality=2.9	quality_position_model=Inf	ref_cov=23/135	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=35/135
RA	2262	.	NC_007779	2847445	0	G	T	bias_e_value=8.18184	bias_p_value=1.76093e-06	fisher_strand_p_value=1.0305e-07	frequency=5.672121e-02	genotype_quality=820.8	ks_quality_p_value=1	log10_base_likelihood=-8.33961	log10_qual_likelihood_position_model=16.82	log10_strand_likelihood_position_model=6.98695	new_cov=0/20	polymorphism_quality=2.9	quality=2.9	quality_position_model=Inf	ref_cov=135/99	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=135/120
RA	2263	.	NC_007779	2865228	0	A	G	bias_e_value=879152	bias_p_value=0.189214	fisher_strand_p_value=0.0468038	frequency=3.282166e-02	genotype_quality=1014.7	ks_quality_p_value=0.993776	log10_base_likelihood=-18.709	log10_qual_likelihood_position_model=4.18208	log10_strand_likelihood_position_model=1.45716	new_cov=8/1	polymorphism_quality=13.4	quality=13.4	quality_position_model=3.74349e-15	ref_cov=144/120	reject=POLYMORPHISM_STRAND	tot_cov=152/121
RA	2264	.	NC_007779	2866111	0	A	G	frequency=1	genotype_quality=920.6	new_cov=93/125	quality=920.6	ref_cov=0/0	tot_cov=93/125
RA	2265	.	NC_007779	2872916	0	T	G	bias_e_value=6.88429e-07	bias_p_value=1.48166e-13	fisher_strand_p_value=4.34902e-15	frequency=9.459209e-02	genotype_quality=607.0	ks_quality_p_value=1	log10_base_likelihood=-13.1411	log10_qual_likelihood_position_model=40.5154	log10_strand_likelihood_position_model=14.3616	new_cov=37/0	polymorphism_quality=7.8	quality=7.8	quality_position_model=Inf	ref_cov=63/117	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=100/117
RA	2266	.	NC_007779	2895131	0	A	C	bias_e_value=3.68323e-08	bias_p_value=7.92718e-15	fisher_strand_p_value=2.13777e-16	frequency=1.196656e-01	genotype_quality=461.9	ks_quality_p_value=1	log10_base_likelihood=-19.3396	log10_qual_likelihood_position_model=26.5936	log10_strand_likelihood_position_model=15.67	new_cov=0/24	polymorphism_quality=14.0	quality=14.0	quality_position_model=Inf	ref_cov=114/21	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=114/45
RA	2267	.	NC_007779	2895144	0	G	C	bias_e_value=9.22924	bias_p_value=1.98635e-06	fisher_strand_p_value=1.17119e-07	frequency=9.262991e-02	genotype_quality=519.0	ks_quality_p_value=1	log10_base_likelihood=-10.0487	log10_qual_likelihood_position_model=18.7334	log10_strand_likelihood_position_model=6.94139	new_cov=1/17	polymorphism_quality=4.6	quality=4.6	quality_position_model=Inf	ref_cov=99/42	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=100/59
RA	2268	.	NC_007779	2898953	1	.	A	bias_e_value=1879250	bias_p_value=0.404458	fisher_strand_p_value=1	frequency=1.075268e-02	genotype_quality=905.2	ks_quality_p_value=0.134562	log10_base_likelihood=-8.14352	log10_qual_likelihood_position_model=1.44047	log10_strand_likelihood_position_model=0.311737	new_cov=1/1	polymorphism_quality=2.7	quality=2.7	quality_position_model=2.51375e-08	ref_cov=76/108	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=77/109
RA	2269	.	NC_007779	2899216	0	T	.	bias_e_value=3018810	bias_p_value=0.649719	fisher_strand_p_value=1	frequency=1.569748e-02	genotype_quality=744.2	ks_quality_p_value=0.290595	log10_base_likelihood=-8.41446	log10_qual_likelihood_position_model=3.26852	log10_strand_likelihood_position_model=0.400564	new_cov=1/2	polymorphism_quality=2.9	quality=2.9	quality_position_model=1.27819e-06	ref_cov=89/99	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=90/101
RA	2270	.	NC_007779	2905383	0	T	C	bias_e_value=4331900	bias_p_value=0.932328	fisher_strand_p_value=0.66763	frequency=1.765442e-02	genotype_quality=1087.3	ks_quality_p_value=0.981734	log10_base_likelihood=-10.0427	log10_qual_likelihood_position_model=3.87286	log10_strand_likelihood_position_model=0.534696	new_cov=3/2	polymorphism_quality=4.6	quality=4.6	quality_position_model=1.52104e-07	ref_cov=129/148	tot_cov=132/150
RA	2271	.	NC_007779	2905392	0	A	G	bias_e_value=4353940	bias_p_value=0.93707	fisher_strand_p_value=0.667253	frequency=1.704121e-02	genotype_quality=1067.3	ks_quality_p_value=0.999465	log10_base_likelihood=-6.94361	log10_qual_likelihood_position_model=5.43874	log10_strand_likelihood_position_model=0.53545	new_cov=3/2	polymorphism_quality=1.4	quality=1.4	quality_position_model=0.015297	ref_cov=126/145	reject=EVALUE	tot_cov=129/147
RA	2272	.	NC_007779	2905395	0	G	C	bias_e_value=4341970	bias_p_value=0.934495	fisher_strand_p_value=0.664923	frequency=1.800060e-02	genotype_quality=1156.4	ks_quality_p_value=0.993518	log10_base_likelihood=-10.9059	log10_qual_likelihood_position_model=4.37788	log10_strand_likelihood_position_model=0.541803	new_cov=3/2	polymorphism_quality=5.5	quality=5.5	quality_position_model=6.58838e-08	ref_cov=125/147	tot_cov=128/149
RA	2273	.	NC_007779	2905398	0	A	G	bias_e_value=4353310	bias_p_value=0.936936	fisher_strand_p_value=0.66883	frequency=1.796246e-02	genotype_quality=1067.3	ks_quality_p_value=0.996614	log10_base_likelihood=-7.81229	log10_qual_likelihood_position_model=6.068	log10_strand_likelihood_position_model=0.531481	new_cov=3/2	polymorphism_quality=2.3	quality=2.3	quality_position_model=0.00793848	ref_cov=126/143	tot_cov=129/145
RA	2274	.	NC_007779	2905401	0	A	G	bias_e_value=4352110	bias_p_value=0.936677	fisher_strand_p_value=0.668331	frequency=1.849365e-02	genotype_quality=1023.6	ks_quality_p_value=0.996406	log10_base_likelihood=-7.94263	log10_qual_likelihood_position_model=5.79036	log10_strand_likelihood_position_model=0.532405	new_cov=3/2	polymorphism_quality=2.5	quality=2.5	quality_position_model=0.0027488	ref_cov=122/139	tot_cov=125/141
RA	2275	.	NC_007779	2905404	0	G	A	bias_e_value=4350470	bias_p_value=0.936323	fisher_strand_p_value=0.666594	frequency=1.828194e-02	genotype_quality=1082.5	ks_quality_p_value=0.997698	log10_base_likelihood=-6.61175	log10_qual_likelihood_position_model=6.4725	log10_strand_likelihood_position_model=0.536794	new_cov=3/2	polymorphism_quality=1.1	quality=1.1	quality_position_model=Inf	ref_cov=121/140	reject=EVALUE	tot_cov=124/142
RA	2276	.	NC_007779	2905405	0	C	G	bias_e_value=4359310	bias_p_value=0.938226	fisher_strand_p_value=0.670152	frequency=1.864910e-02	genotype_quality=1108.5	ks_quality_p_value=0.999424	log10_base_likelihood=-9.61469	log10_qual_likelihood_position_model=7.07456	log10_strand_likelihood_position_model=0.528143	new_cov=3/2	polymorphism_quality=4.2	quality=4.2	quality_position_model=0.0010153	ref_cov=123/138	tot_cov=126/140
RA	2277	.	NC_007779	2905406	0	T	C	bias_e_value=4317800	bias_p_value=0.929293	fisher_strand_p_value=0.670032	frequency=1.886177e-02	genotype_quality=1014.7	ks_quality_p_value=0.967629	log10_base_likelihood=-9.8365	log10_qual_likelihood_position_model=4.25926	log10_strand_likelihood_position_model=0.528344	new_cov=3/2	polymorphism_quality=4.4	quality=4.4	quality_position_model=6.17461e-07	ref_cov=122/137	reject=SURROUNDING_HOMOPOLYMER	tot_cov=125/139
RA	2278	.	NC_007779	2905408	0	A	G	bias_e_value=4330370	bias_p_value=0.931997	fisher_strand_p_value=0.668917	frequency=1.906204e-02	genotype_quality=1003.3	ks_quality_p_value=0.978679	log10_base_likelihood=-9.55266	log10_qual_likelihood_position_model=4.5177	log10_strand_likelihood_position_model=0.530816	new_cov=3/2	polymorphism_quality=4.1	quality=4.1	quality_position_model=2.28183e-06	ref_cov=120/136	tot_cov=123/138
RA	2279	.	NC_007779	2905409	0	T	G	bias_e_value=4325430	bias_p_value=0.930935	fisher_strand_p_value=0.669538	frequency=1.951218e-02	genotype_quality=998.0	ks_quality_p_value=0.974042	log10_base_likelihood=-13.0376	log10_qual_likelihood_position_model=5.07007	log10_strand_likelihood_position_model=0.529183	new_cov=3/2	polymorphism_quality=7.7	quality=7.7	quality_position_model=2.09966e-09	ref_cov=118/133	tot_cov=121/135
RA	2280	.	NC_007779	2905412	0	A	C	bias_e_value=4359410	bias_p_value=0.938248	fisher_strand_p_value=0.672453	frequency=1.956367e-02	genotype_quality=996.5	ks_quality_p_value=0.996086	log10_base_likelihood=-12.1185	log10_qual_likelihood_position_model=6.28317	log10_strand_likelihood_position_model=0.522817	new_cov=3/2	polymorphism_quality=6.7	quality=6.7	quality_position_model=3.28639e-07	ref_cov=119/131	tot_cov=122/133
RA	2281	.	NC_007779	2905416	0	A	G	bias_e_value=4366290	bias_p_value=0.939729	fisher_strand_p_value=0.673645	frequency=1.862240e-02	genotype_quality=992.2	ks_quality_p_value=0.999847	log10_base_likelihood=-6.59595	log10_qual_likelihood_position_model=6.95084	log10_strand_likelihood_position_model=0.520524	new_cov=3/2	polymorphism_quality=1.1	quality=1.1	quality_position_model=Inf	ref_cov=121/132	reject=EVALUE	tot_cov=124/134
RA	2282	.	NC_007779	2905419	0	T	C	bias_e_value=4373320	bias_p_value=0.941241	fisher_strand_p_value=0.677509	frequency=1.966667e-02	genotype_quality=954.9	ks_quality_p_value=0.999831	log10_base_likelihood=-5.94507	log10_qual_likelihood_position_model=8.41057	log10_strand_likelihood_position_model=0.513022	new_cov=3/2	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=117/124	reject=EVALUE	tot_cov=120/126
RA	2283	.	NC_007779	2905431	0	T	.	bias_e_value=4360360	bias_p_value=0.938452	fisher_strand_p_value=0.673117	frequency=2.014828e-02	genotype_quality=978.6	ks_quality_p_value=0.99586	log10_base_likelihood=-13.8201	log10_qual_likelihood_position_model=6.28217	log10_strand_likelihood_position_model=0.521225	new_cov=3/2	polymorphism_quality=8.5	quality=8.5	quality_position_model=5.69903e-09	ref_cov=116/127	tot_cov=119/129
RA	2284	.	NC_007779	2905432	0	G	A	bias_e_value=4642550	bias_p_value=0.999185	fisher_strand_p_value=1	frequency=2.087688e-02	genotype_quality=960.8	ks_quality_p_value=0.959905	log10_base_likelihood=-8.03687	log10_qual_likelihood_position_model=5.91879	log10_strand_likelihood_position_model=0.499617	new_cov=3/2	polymorphism_quality=2.6	quality=2.6	quality_position_model=0.00275869	ref_cov=116/116	tot_cov=119/118
RA	2285	.	NC_007779	2905436	0	C	T	bias_e_value=4382150	bias_p_value=0.943142	fisher_strand_p_value=0.683459	frequency=2.062225e-02	genotype_quality=956.8	ks_quality_p_value=0.998336	log10_base_likelihood=-6.49841	log10_qual_likelihood_position_model=6.63305	log10_strand_likelihood_position_model=0.50333	new_cov=3/2	polymorphism_quality=1.0	quality=1.0	quality_position_model=Inf	ref_cov=114/116	reject=EVALUE	tot_cov=117/118
RA	2286	.	NC_007779	2905437	0	A	T	bias_e_value=4373130	bias_p_value=0.9412	fisher_strand_p_value=0.683459	frequency=2.115726e-02	genotype_quality=922.5	ks_quality_p_value=0.990975	log10_base_likelihood=-9.58681	log10_qual_likelihood_position_model=5.66134	log10_strand_likelihood_position_model=0.50333	new_cov=3/2	polymorphism_quality=4.1	quality=4.1	quality_position_model=3.12378e-05	ref_cov=114/116	tot_cov=117/118
RA	2287	.	NC_007779	2905438	1	.	A	bias_e_value=4367460	bias_p_value=0.93998	fisher_strand_p_value=0.680648	frequency=2.183342e-02	genotype_quality=1088.8	ks_quality_p_value=0.990493	log10_base_likelihood=-21.0249	log10_qual_likelihood_position_model=7.55478	log10_strand_likelihood_position_model=0.507312	new_cov=3/2	polymorphism_quality=15.7	quality=15.7	quality_position_model=4.80783e-15	ref_cov=110/114	tot_cov=113/116
RA	2288	.	NC_007779	2905439	0	T	G	bias_e_value=4645380	bias_p_value=0.999795	fisher_strand_p_value=1	frequency=2.029705e-02	genotype_quality=941.5	ks_quality_p_value=0.979797	log10_base_likelihood=-12.1068	log10_qual_likelihood_position_model=5.49412	log10_strand_likelihood_position_model=0.498081	new_cov=3/2	polymorphism_quality=6.7	quality=6.7	quality_position_model=4.85367e-08	ref_cov=121/120	tot_cov=124/122
RA	2289	.	NC_007779	2905443	0	A	G	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=2.004623e-02	genotype_quality=951.8	ks_quality_p_value=0.99932	log10_base_likelihood=-7.44996	log10_qual_likelihood_position_model=7.22556	log10_strand_likelihood_position_model=0.499799	new_cov=3/2	polymorphism_quality=1.9	quality=1.9	quality_position_model=Inf	ref_cov=120/120	reject=EVALUE	tot_cov=123/122
RA	2290	.	NC_007779	2908089	0	A	G	bias_e_value=718548	bias_p_value=0.154648	fisher_strand_p_value=0.371545	frequency=2.050686e-02	genotype_quality=919.1	ks_quality_p_value=0.0960648	log10_base_likelihood=-10.4027	log10_qual_likelihood_position_model=5.00272	log10_strand_likelihood_position_model=0.762285	new_cov=4/1	polymorphism_quality=5.0	quality=5.0	quality_position_model=1.65533e-06	ref_cov=122/116	reject=POLYMORPHISM_STRAND	tot_cov=126/117
RA	2291	.	NC_007779	2908098	0	G	A	bias_e_value=1176540	bias_p_value=0.253218	fisher_strand_p_value=0.449716	frequency=2.789974e-02	genotype_quality=949.5	ks_quality_p_value=0.153211	log10_base_likelihood=-13.297	log10_qual_likelihood_position_model=5.59514	log10_strand_likelihood_position_model=0.73088	new_cov=5/2	polymorphism_quality=7.9	quality=7.9	quality_position_model=6.35132e-09	ref_cov=125/117	tot_cov=130/119
RA	2292	.	NC_007779	2908106	0	G	A	bias_e_value=4375420	bias_p_value=0.941693	fisher_strand_p_value=1	frequency=4.899883e-02	genotype_quality=826.1	ks_quality_p_value=0.678558	log10_base_likelihood=-24.7586	log10_qual_likelihood_position_model=5.70918	log10_strand_likelihood_position_model=0.619572	new_cov=6/5	polymorphism_quality=19.5	quality=19.5	quality_position_model=1.38203e-20	ref_cov=112/101	tot_cov=118/106
RA	2293	.	NC_007779	2908122	0	A	T	bias_e_value=4151090	bias_p_value=0.893412	fisher_strand_p_value=1	frequency=5.754280e-02	genotype_quality=905.0	ks_quality_p_value=0.575389	log10_base_likelihood=-37.8895	log10_qual_likelihood_position_model=5.94722	log10_strand_likelihood_position_model=0.675183	new_cov=7/7	polymorphism_quality=32.7	quality=32.7	quality_position_model=1.5506e-33	ref_cov=121/108	tot_cov=128/115
RA	2294	.	NC_007779	2908125	0	G	A	bias_e_value=4114820	bias_p_value=0.885605	fisher_strand_p_value=1	frequency=5.796671e-02	genotype_quality=847.6	ks_quality_p_value=0.561568	log10_base_likelihood=-26.0907	log10_qual_likelihood_position_model=10.0589	log10_strand_likelihood_position_model=0.669254	new_cov=7/7	polymorphism_quality=20.9	quality=20.9	quality_position_model=1.7637e-17	ref_cov=114/106	tot_cov=122/113
RA	2295	.	NC_007779	2908134	0	A	G	bias_e_value=4419980	bias_p_value=0.951284	fisher_strand_p_value=0.790629	frequency=6.194782e-02	genotype_quality=803.2	ks_quality_p_value=0.891139	log10_base_likelihood=-35.3032	log10_qual_likelihood_position_model=5.41674	log10_strand_likelihood_position_model=0.680677	new_cov=7/7	polymorphism_quality=30.1	quality=30.1	quality_position_model=1.84679e-31	ref_cov=117/101	tot_cov=124/109
RA	2296	.	NC_007779	2908137	0	A	G	bias_e_value=4475250	bias_p_value=0.963178	fisher_strand_p_value=0.783781	frequency=6.046915e-02	genotype_quality=794.7	ks_quality_p_value=0.945673	log10_base_likelihood=-33.5155	log10_qual_likelihood_position_model=8.11553	log10_strand_likelihood_position_model=0.703128	new_cov=7/7	polymorphism_quality=28.3	quality=28.3	quality_position_model=6.47441e-27	ref_cov=121/96	tot_cov=128/103
RA	2297	.	NC_007779	2908143	0	C	G	bias_e_value=4524470	bias_p_value=0.973772	fisher_strand_p_value=0.78603	frequency=5.954790e-02	genotype_quality=870.4	ks_quality_p_value=0.992185	log10_base_likelihood=-34.9767	log10_qual_likelihood_position_model=8.77538	log10_strand_likelihood_position_model=0.692311	new_cov=7/7	polymorphism_quality=29.8	quality=29.8	quality_position_model=9.82039e-28	ref_cov=118/97	tot_cov=125/104
RA	2298	.	NC_007779	2908146	0	T	C	bias_e_value=4197740	bias_p_value=0.903451	fisher_strand_p_value=0.595503	frequency=6.345940e-02	genotype_quality=802.4	ks_quality_p_value=0.99764	log10_base_likelihood=-33.5568	log10_qual_likelihood_position_model=9.21259	log10_strand_likelihood_position_model=0.773064	new_cov=7/8	polymorphism_quality=28.4	quality=28.4	quality_position_model=8.8482e-26	ref_cov=121/97	tot_cov=128/105
RA	2299	.	NC_007779	2908149	0	C	G	bias_e_value=4221530	bias_p_value=0.908572	fisher_strand_p_value=0.606268	frequency=6.332541e-02	genotype_quality=916.1	ks_quality_p_value=0.996413	log10_base_likelihood=-41.6633	log10_qual_likelihood_position_model=8.21614	log10_strand_likelihood_position_model=0.737605	new_cov=7/8	polymorphism_quality=36.5	quality=36.5	quality_position_model=5.47488e-35	ref_cov=117/101	tot_cov=125/109
RA	2300	.	NC_007779	2908155	0	T	C	bias_e_value=3479630	bias_p_value=0.748898	fisher_strand_p_value=0.789773	frequency=6.689644e-02	genotype_quality=735.7	ks_quality_p_value=0.482745	log10_base_likelihood=-37.1222	log10_qual_likelihood_position_model=7.27499	log10_strand_likelihood_position_model=0.735862	new_cov=7/8	polymorphism_quality=32.0	quality=32.0	quality_position_model=2.29903e-31	ref_cov=111/96	tot_cov=118/104
RA	2301	.	NC_007779	2908160	0	T	A	bias_e_value=4186020	bias_p_value=0.900931	fisher_strand_p_value=0.603047	frequency=6.689548e-02	genotype_quality=825.5	ks_quality_p_value=0.977195	log10_base_likelihood=-41.6017	log10_qual_likelihood_position_model=6.90216	log10_strand_likelihood_position_model=0.743774	new_cov=7/8	polymorphism_quality=36.5	quality=36.5	quality_position_model=3.04891e-36	ref_cov=113/96	tot_cov=120/104
RA	2302	.	NC_007779	2908161	0	T	G	bias_e_value=3724970	bias_p_value=0.801701	fisher_strand_p_value=0.603047	frequency=6.691599e-02	genotype_quality=794.6	ks_quality_p_value=0.730577	log10_base_likelihood=-49.9647	log10_qual_likelihood_position_model=5.2978	log10_strand_likelihood_position_model=0.743774	new_cov=7/8	polymorphism_quality=44.9	quality=44.9	quality_position_model=2.89403e-46	ref_cov=113/96	tot_cov=120/104
RA	2303	.	NC_007779	2908165	0	C	T	bias_e_value=4180730	bias_p_value=0.899792	fisher_strand_p_value=0.600563	frequency=6.805420e-02	genotype_quality=786.7	ks_quality_p_value=0.977664	log10_base_likelihood=-31.584	log10_qual_likelihood_position_model=9.32241	log10_strand_likelihood_position_model=0.749634	new_cov=7/8	polymorphism_quality=26.4	quality=26.4	quality_position_model=1.06054e-23	ref_cov=111/93	tot_cov=119/101
RA	2304	.	NC_007779	2908170	0	A	G	bias_e_value=4360520	bias_p_value=0.938487	fisher_strand_p_value=0.789921	frequency=6.970978e-02	genotype_quality=735.5	ks_quality_p_value=0.848716	log10_base_likelihood=-39.8236	log10_qual_likelihood_position_model=4.33704	log10_strand_likelihood_position_model=0.7252	new_cov=7/8	polymorphism_quality=34.7	quality=34.7	quality_position_model=4.71546e-37	ref_cov=106/94	tot_cov=113/102
RA	2305	.	NC_007779	2908173	0	A	G	bias_e_value=2462750	bias_p_value=0.530043	fisher_strand_p_value=0.445104	frequency=7.462120e-02	genotype_quality=672.2	ks_quality_p_value=0.460807	log10_base_likelihood=-40.3816	log10_qual_likelihood_position_model=8.64288	log10_strand_likelihood_position_model=0.8309	new_cov=7/9	polymorphism_quality=35.2	quality=35.2	quality_position_model=3.56653e-33	ref_cov=106/89	tot_cov=113/99
RA	2306	.	NC_007779	2908176	0	T	C	bias_e_value=4641900	bias_p_value=0.999047	fisher_strand_p_value=1	frequency=7.939100e-02	genotype_quality=718.4	ks_quality_p_value=0.956663	log10_base_likelihood=-45.5947	log10_qual_likelihood_position_model=4.61936	log10_strand_likelihood_position_model=0.701173	new_cov=9/8	polymorphism_quality=40.5	quality=40.5	quality_position_model=1.34622e-42	ref_cov=105/92	tot_cov=114/100
RA	2307	.	NC_007779	2908179	0	A	G	bias_e_value=3093540	bias_p_value=0.665803	fisher_strand_p_value=0.596655	frequency=7.017708e-02	genotype_quality=723.0	ks_quality_p_value=0.509256	log10_base_likelihood=-39.0938	log10_qual_likelihood_position_model=7.04169	log10_strand_likelihood_position_model=0.761505	new_cov=7/8	polymorphism_quality=34.0	quality=34.0	quality_position_model=1.46834e-33	ref_cov=109/89	tot_cov=117/98
RA	2308	.	NC_007779	2908182	0	G	C	bias_e_value=2876210	bias_p_value=0.619028	fisher_strand_p_value=0.268098	frequency=6.181288e-02	genotype_quality=824.7	ks_quality_p_value=0.99436	log10_base_likelihood=-35.2297	log10_qual_likelihood_position_model=8.6771	log10_strand_likelihood_position_model=0.922776	new_cov=5/8	polymorphism_quality=30.1	quality=30.1	quality_position_model=7.41824e-28	ref_cov=108/89	tot_cov=113/97
RA	2309	.	NC_007779	2908185	0	G	A	bias_e_value=1901810	bias_p_value=0.409314	fisher_strand_p_value=0.192354	frequency=4.513741e-02	genotype_quality=831.2	ks_quality_p_value=0.712202	log10_base_likelihood=-21.7706	log10_qual_likelihood_position_model=5.03799	log10_strand_likelihood_position_model=1.10134	new_cov=3/7	polymorphism_quality=16.5	quality=16.5	quality_position_model=9.41886e-18	ref_cov=116/94	tot_cov=119/101
RA	2310	.	NC_007779	2908190	0	T	G	bias_e_value=2378030	bias_p_value=0.511807	fisher_strand_p_value=0.193797	frequency=4.498005e-02	genotype_quality=811.8	ks_quality_p_value=1	log10_base_likelihood=-28.3514	log10_qual_likelihood_position_model=5.45734	log10_strand_likelihood_position_model=1.0755	new_cov=3/7	polymorphism_quality=23.1	quality=23.1	quality_position_model=5.1989e-24	ref_cov=112/93	tot_cov=115/100
RA	2311	.	NC_007779	2908200	0	C	G	bias_e_value=4148060	bias_p_value=0.89276	fisher_strand_p_value=0.593052	frequency=1.451492e-02	genotype_quality=855.0	ks_quality_p_value=0.968233	log10_base_likelihood=-6.41381	log10_qual_likelihood_position_model=3.04718	log10_strand_likelihood_position_model=0.467301	new_cov=1/2	polymorphism_quality=0.9	quality=0.9	quality_position_model=0.000112133	ref_cov=111/92	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=112/94
RA	2312	.	NC_007779	2939008	0	A	C	bias_e_value=9.38933e-07	bias_p_value=2.02081e-13	fisher_strand_p_value=5.99536e-15	frequency=9.221363e-02	genotype_quality=657.1	ks_quality_p_value=0.998729	log10_base_likelihood=-13.5969	log10_qual_likelihood_position_model=27.5862	log10_strand_likelihood_position_model=14.2222	new_cov=0/27	polymorphism_quality=8.2	quality=8.2	quality_position_model=Inf	ref_cov=145/48	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=145/75
RA	2313	.	NC_007779	2940225	0	G	T	bias_e_value=1258.74	bias_p_value=0.00027091	fisher_strand_p_value=2.32126e-05	frequency=4.630089e-02	genotype_quality=776.3	ks_quality_p_value=1	log10_base_likelihood=-8.68652	log10_qual_likelihood_position_model=12.0936	log10_strand_likelihood_position_model=4.71701	new_cov=0/16	polymorphism_quality=3.2	quality=3.2	quality_position_model=Inf	ref_cov=115/110	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=116/127
RA	2314	.	NC_007779	2955928	0	G	T	bias_e_value=12420.2	bias_p_value=0.00267312	fisher_strand_p_value=0.000309227	frequency=2.876759e-02	genotype_quality=714.1	ks_quality_p_value=0.946121	log10_base_likelihood=-5.67407	log10_qual_likelihood_position_model=11.1104	log10_strand_likelihood_position_model=3.50972	new_cov=8/0	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=70/130	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=78/130
RA	2315	.	NC_007779	2983097	0	A	C	bias_e_value=5.58131e-11	bias_p_value=1.20123e-17	fisher_strand_p_value=2.74637e-19	frequency=1.596332e-01	genotype_quality=360.2	ks_quality_p_value=1	log10_base_likelihood=-17.154	log10_qual_likelihood_position_model=33.3895	log10_strand_likelihood_position_model=18.5612	new_cov=0/35	polymorphism_quality=11.8	quality=11.8	quality_position_model=Inf	ref_cov=89/21	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=89/56
RA	2316	.	NC_007779	2987535	0	A	C	bias_e_value=4.64856e-20	bias_p_value=1.00048e-26	fisher_strand_p_value=1.53821e-28	frequency=2.727852e-01	genotype_quality=325.0	ks_quality_p_value=1	log10_base_likelihood=-49.5894	log10_qual_likelihood_position_model=40.6699	log10_strand_likelihood_position_model=27.813	new_cov=0/53	polymorphism_quality=44.5	quality=44.5	quality_position_model=Inf	ref_cov=97/18	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=97/71
RA	2317	.	NC_007779	2999826	0	A	C	bias_e_value=9.44422e-10	bias_p_value=2.03262e-16	fisher_strand_p_value=4.97682e-18	frequency=9.057951e-02	genotype_quality=469.4	ks_quality_p_value=1	log10_base_likelihood=-9.18557	log10_qual_likelihood_position_model=25.571	log10_strand_likelihood_position_model=17.303	new_cov=0/32	polymorphism_quality=3.7	quality=3.7	quality_position_model=Inf	ref_cov=112/30	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=112/62
RA	2318	.	NC_007779	3002577	0	T	G	bias_e_value=8.1143e-06	bias_p_value=1.74639e-12	fisher_strand_p_value=5.53983e-14	frequency=7.810593e-02	genotype_quality=670.4	ks_quality_p_value=1	log10_base_likelihood=-9.19502	log10_qual_likelihood_position_model=29.4458	log10_strand_likelihood_position_model=13.2565	new_cov=28/0	polymorphism_quality=3.7	quality=3.7	quality_position_model=Inf	ref_cov=54/134	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=82/134
RA	2319	.	NC_007779	3003330	0	G	A	frequency=1	genotype_quality=768.0	new_cov=88/102	quality=768.0	ref_cov=0/0	tot_cov=88/102
RA	2320	.	NC_007779	3029385	0	C	A	bias_e_value=1.11223e-09	bias_p_value=2.39379e-16	fisher_strand_p_value=5.8853e-18	frequency=1.441970e-01	genotype_quality=545.6	ks_quality_p_value=1	log10_base_likelihood=-43.5842	log10_qual_likelihood_position_model=25.9123	log10_strand_likelihood_position_model=17.232	new_cov=1/23	polymorphism_quality=38.5	quality=38.5	quality_position_model=0.072968	ref_cov=123/12	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=124/35
RA	2321	.	NC_007779	3033057	0	G	A	bias_e_value=2380600	bias_p_value=0.51236	fisher_strand_p_value=1	frequency=6.469631e-02	genotype_quality=898.9	ks_quality_p_value=0.194134	log10_base_likelihood=-39.8784	log10_qual_likelihood_position_model=5.5957	log10_strand_likelihood_position_model=0.693019	new_cov=9/7	polymorphism_quality=34.7	quality=34.7	quality_position_model=7.12124e-36	ref_cov=126/105	tot_cov=135/112
RA	2322	.	NC_007779	3033060	0	T	C	bias_e_value=4332960	bias_p_value=0.932554	fisher_strand_p_value=1	frequency=6.689119e-02	genotype_quality=827.0	ks_quality_p_value=0.655972	log10_base_likelihood=-41.9818	log10_qual_likelihood_position_model=4.75172	log10_strand_likelihood_position_model=0.696501	new_cov=9/7	polymorphism_quality=36.9	quality=36.9	quality_position_model=7.77379e-39	ref_cov=120/103	tot_cov=129/110
RA	2323	.	NC_007779	3033063	0	G	A	bias_e_value=3499940	bias_p_value=0.75327	fisher_strand_p_value=1	frequency=6.638193e-02	genotype_quality=873.1	ks_quality_p_value=0.385821	log10_base_likelihood=-41.1312	log10_qual_likelihood_position_model=6.58725	log10_strand_likelihood_position_model=0.695306	new_cov=9/7	polymorphism_quality=36.0	quality=36.0	quality_position_model=3.90792e-36	ref_cov=121/103	tot_cov=130/111
RA	2324	.	NC_007779	3033066	0	T	G	bias_e_value=2690220	bias_p_value=0.578999	fisher_strand_p_value=1	frequency=6.477833e-02	genotype_quality=889.8	ks_quality_p_value=0.23755	log10_base_likelihood=-54.0496	log10_qual_likelihood_position_model=5.89194	log10_strand_likelihood_position_model=0.69521	new_cov=9/7	polymorphism_quality=49.0	quality=49.0	quality_position_model=8.04478e-50	ref_cov=125/106	tot_cov=134/113
RA	2325	.	NC_007779	3033069	0	A	T	bias_e_value=1248780	bias_p_value=0.268767	fisher_strand_p_value=1	frequency=6.666183e-02	genotype_quality=857.5	ks_quality_p_value=0.074806	log10_base_likelihood=-47.5156	log10_qual_likelihood_position_model=6.84575	log10_strand_likelihood_position_model=0.701554	new_cov=9/7	polymorphism_quality=42.4	quality=42.4	quality_position_model=2.73286e-42	ref_cov=119/105	tot_cov=128/112
RA	2326	.	NC_007779	3033075	0	G	C	bias_e_value=2299680	bias_p_value=0.494945	fisher_strand_p_value=0.798058	frequency=6.348467e-02	genotype_quality=981.1	ks_quality_p_value=0.230165	log10_base_likelihood=-48.657	log10_qual_likelihood_position_model=5.92067	log10_strand_likelihood_position_model=0.727598	new_cov=9/7	polymorphism_quality=43.6	quality=43.6	quality_position_model=2.42931e-44	ref_cov=120/116	tot_cov=129/123
RA	2327	.	NC_007779	3033077	0	A	T	bias_e_value=3715400	bias_p_value=0.799642	fisher_strand_p_value=0.797354	frequency=6.318808e-02	genotype_quality=941.8	ks_quality_p_value=0.549403	log10_base_likelihood=-44.2811	log10_qual_likelihood_position_model=7.9012	log10_strand_likelihood_position_model=0.737115	new_cov=9/7	polymorphism_quality=39.2	quality=39.2	quality_position_model=6.11965e-38	ref_cov=119/118	tot_cov=128/125
RA	2328	.	NC_007779	3033078	0	G	A	bias_e_value=1718660	bias_p_value=0.369896	fisher_strand_p_value=0.616818	frequency=6.313705e-02	genotype_quality=921.4	ks_quality_p_value=0.191093	log10_base_likelihood=-37.5749	log10_qual_likelihood_position_model=8.34993	log10_strand_likelihood_position_model=0.751254	new_cov=9/7	polymorphism_quality=32.4	quality=32.4	quality_position_model=1.00906e-30	ref_cov=117/120	tot_cov=126/127
RA	2329	.	NC_007779	3033081	0	A	G	bias_e_value=2738510	bias_p_value=0.589392	fisher_strand_p_value=0.796619	frequency=6.772852e-02	genotype_quality=782.5	ks_quality_p_value=0.307371	log10_base_likelihood=-40.1757	log10_qual_likelihood_position_model=7.51606	log10_strand_likelihood_position_model=0.746773	new_cov=9/7	polymorphism_quality=35.0	quality=35.0	quality_position_model=3.47016e-34	ref_cov=109/111	tot_cov=118/118
RA	2330	.	NC_007779	3033084	0	A	G	bias_e_value=4449600	bias_p_value=0.957658	fisher_strand_p_value=0.796619	frequency=6.711006e-02	genotype_quality=810.6	ks_quality_p_value=0.90819	log10_base_likelihood=-37.7413	log10_qual_likelihood_position_model=6.80814	log10_strand_likelihood_position_model=0.746773	new_cov=9/7	polymorphism_quality=32.6	quality=32.6	quality_position_model=1.89992e-32	ref_cov=109/111	tot_cov=118/118
RA	2331	.	NC_007779	3033087	0	C	G	bias_e_value=2451510	bias_p_value=0.527622	fisher_strand_p_value=0.611197	frequency=7.006216e-02	genotype_quality=884.5	ks_quality_p_value=0.333089	log10_base_likelihood=-46.9817	log10_qual_likelihood_position_model=7.54167	log10_strand_likelihood_position_model=0.763823	new_cov=9/7	polymorphism_quality=41.9	quality=41.9	quality_position_model=5.44209e-41	ref_cov=103/109	tot_cov=112/116
RA	2332	.	NC_007779	3033089	1	.	G	bias_e_value=4241890	bias_p_value=0.912956	fisher_strand_p_value=0.616181	frequency=6.639051e-02	genotype_quality=1045.9	ks_quality_p_value=0.994703	log10_base_likelihood=-77.9353	log10_qual_likelihood_position_model=6.70507	log10_strand_likelihood_position_model=0.750919	new_cov=9/7	polymorphism_quality=72.9	quality=72.9	quality_position_model=6.35967e-73	ref_cov=111/114	tot_cov=120/121
RA	2333	.	NC_007779	3033093	0	A	.	bias_e_value=1873070	bias_p_value=0.403129	fisher_strand_p_value=0.798019	frequency=6.398678e-02	genotype_quality=916.3	ks_quality_p_value=0.167791	log10_base_likelihood=-53.6925	log10_qual_likelihood_position_model=7.97315	log10_strand_likelihood_position_model=0.727359	new_cov=9/7	polymorphism_quality=48.6	quality=48.6	quality_position_model=2.44044e-47	ref_cov=119/115	tot_cov=128/122
RA	2334	.	NC_007779	3033103	0	T	A	bias_e_value=384447	bias_p_value=0.0827421	fisher_strand_p_value=0.799259	frequency=6.249714e-02	genotype_quality=873.3	ks_quality_p_value=0.0201941	log10_base_likelihood=-43.0011	log10_qual_likelihood_position_model=11.9616	log10_strand_likelihood_position_model=0.719061	new_cov=9/7	polymorphism_quality=37.9	quality=37.9	quality_position_model=1.39221e-32	ref_cov=121/114	tot_cov=130/121
RA	2335	.	NC_007779	3033105	0	C	A	bias_e_value=1386700	bias_p_value=0.298451	fisher_strand_p_value=0.799767	frequency=6.388760e-02	genotype_quality=979.8	ks_quality_p_value=0.108275	log10_base_likelihood=-40.5045	log10_qual_likelihood_position_model=8.33535	log10_strand_likelihood_position_model=0.716335	new_cov=9/7	polymorphism_quality=35.4	quality=35.4	quality_position_model=1.00812e-33	ref_cov=121/113	reject=SURROUNDING_HOMOPOLYMER	tot_cov=130/120
RA	2336	.	NC_007779	3033108	0	T	C	bias_e_value=771930	bias_p_value=0.166137	fisher_strand_p_value=0.79924	frequency=6.411409e-02	genotype_quality=859.5	ks_quality_p_value=0.0490333	log10_base_likelihood=-40.1838	log10_qual_likelihood_position_model=7.97886	log10_strand_likelihood_position_model=0.718769	new_cov=9/7	polymorphism_quality=35.0	quality=35.0	quality_position_model=9.33089e-34	ref_cov=120/113	tot_cov=129/120
RA	2337	.	NC_007779	3033120	0	A	G	bias_e_value=4051300	bias_p_value=0.871935	fisher_strand_p_value=1	frequency=6.168365e-02	genotype_quality=838.9	ks_quality_p_value=0.538695	log10_base_likelihood=-39.4662	log10_qual_likelihood_position_model=4.54162	log10_strand_likelihood_position_model=0.683622	new_cov=8/7	polymorphism_quality=34.3	quality=34.3	quality_position_model=1.57455e-36	ref_cov=117/111	tot_cov=125/118
RA	2338	.	NC_007779	3034413	0	A	C	bias_e_value=3.55185e-18	bias_p_value=7.64441e-25	fisher_strand_p_value=1.26072e-26	frequency=2.472439e-01	genotype_quality=364.2	ks_quality_p_value=1	log10_base_likelihood=-34.3715	log10_qual_likelihood_position_model=38.7391	log10_strand_likelihood_position_model=25.8994	new_cov=0/57	polymorphism_quality=29.2	quality=29.2	quality_position_model=Inf	ref_cov=97/27	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=97/84
RA	2339	.	NC_007779	3035390	0	T	C	bias_e_value=6.02446e-18	bias_p_value=1.2966e-24	fisher_strand_p_value=3.04021e-26	frequency=2.149625e-01	genotype_quality=330.4	ks_quality_p_value=0.709647	log10_base_likelihood=-72.2674	log10_qual_likelihood_position_model=20.7661	log10_strand_likelihood_position_model=25.5171	new_cov=0/36	polymorphism_quality=67.3	quality=67.3	quality_position_model=3.25811e-28	ref_cov=116/12	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=119/48
RA	2340	.	NC_007779	3044712	0	T	C	bias_e_value=41.3344	bias_p_value=8.89614e-06	fisher_strand_p_value=5.80921e-07	frequency=4.292393e-02	genotype_quality=407.2	ks_quality_p_value=0.996881	log10_base_likelihood=-6.66534	log10_qual_likelihood_position_model=8.45817	log10_strand_likelihood_position_model=6.23588	new_cov=6/0	polymorphism_quality=1.1	quality=1.1	quality_position_model=Inf	ref_cov=8/113	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=14/113
RA	2341	.	NC_007779	3044714	0	A	C	bias_e_value=83.3462	bias_p_value=1.79381e-05	fisher_strand_p_value=1.22777e-06	frequency=5.176592e-02	genotype_quality=396.2	ks_quality_p_value=1	log10_base_likelihood=-10.343	log10_qual_likelihood_position_model=9.76	log10_strand_likelihood_position_model=5.91558	new_cov=7/1	polymorphism_quality=4.9	quality=4.9	quality_position_model=Inf	ref_cov=10/114	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=17/115
RA	2342	.	NC_007779	3049815	0	G	T	frequency=1	genotype_quality=870.4	new_cov=104/115	quality=870.4	ref_cov=0/0	tot_cov=104/115
RA	2343	.	NC_007779	3059421	0	T	.	bias_e_value=2263030	bias_p_value=0.487057	fisher_strand_p_value=0.590622	frequency=1.368713e-02	genotype_quality=847.4	ks_quality_p_value=0.30318	log10_base_likelihood=-7.99381	log10_qual_likelihood_position_model=2.55597	log10_strand_likelihood_position_model=0.472197	new_cov=1/2	polymorphism_quality=2.5	quality=2.5	quality_position_model=7.53714e-07	ref_cov=119/97	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=120/99
RA	2344	.	NC_007779	3074129	0	G	T	bias_e_value=446.402	bias_p_value=9.60763e-05	fisher_strand_p_value=7.50608e-06	frequency=6.132936e-02	genotype_quality=676.5	ks_quality_p_value=1	log10_base_likelihood=-8.86158	log10_qual_likelihood_position_model=14.6328	log10_strand_likelihood_position_model=5.14765	new_cov=0/18	polymorphism_quality=3.4	quality=3.4	quality_position_model=Inf	ref_cov=100/98	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=100/116
RA	2345	.	NC_007779	3086164	0	C	A	bias_e_value=98016.9	bias_p_value=0.0210955	fisher_strand_p_value=0.258983	frequency=1.222324e-02	genotype_quality=1017.5	ks_quality_p_value=0.0120293	log10_base_likelihood=-6.963	log10_qual_likelihood_position_model=2.53031	log10_strand_likelihood_position_model=0.752024	new_cov=0/3	polymorphism_quality=1.4	quality=1.4	quality_position_model=1.66667e-05	ref_cov=107/135	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=107/138
RA	2346	.	NC_007779	3088549	0	G	T	bias_e_value=3652.26	bias_p_value=0.000786053	fisher_strand_p_value=7.50348e-05	frequency=4.607010e-02	genotype_quality=799.6	ks_quality_p_value=0.997714	log10_base_likelihood=-7.5286	log10_qual_likelihood_position_model=14.9055	log10_strand_likelihood_position_model=4.22785	new_cov=0/18	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=105/137	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=105/157
RA	2347	.	NC_007779	3089270	0	C	A	bias_e_value=1987.85	bias_p_value=0.000427833	fisher_strand_p_value=3.83019e-05	frequency=4.915047e-02	genotype_quality=783.2	ks_quality_p_value=1	log10_base_likelihood=-8.76497	log10_qual_likelihood_position_model=12.913	log10_strand_likelihood_position_model=4.68978	new_cov=15/0	polymorphism_quality=3.3	quality=3.3	quality_position_model=Inf	ref_cov=105/119	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=121/120
RA	2348	.	NC_007779	3091181	0	C	G	bias_e_value=3235380	bias_p_value=0.696331	fisher_strand_p_value=0.336462	frequency=6.733036e-02	genotype_quality=253.0	ks_quality_p_value=0.982059	log10_base_likelihood=-6.67524	log10_qual_likelihood_position_model=7.4902	log10_strand_likelihood_position_model=0.733682	new_cov=0/7	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=18/62	reject=EVALUE,POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=18/69
RA	2349	.	NC_007779	3110532	0	C	A	bias_e_value=0.230341	bias_p_value=4.95747e-08	fisher_strand_p_value=2.37926e-09	frequency=6.769466e-02	genotype_quality=539.2	ks_quality_p_value=0.998979	log10_base_likelihood=-18.6489	log10_qual_likelihood_position_model=12.5359	log10_strand_likelihood_position_model=8.62356	new_cov=0/10	polymorphism_quality=13.3	quality=13.3	quality_position_model=Inf	ref_cov=121/14	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=121/24
RA	2350	.	NC_007779	3134056	0	G	T	deleted=1	frequency=1	genotype_quality=1.3	new_cov=1/0	quality=1.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	2351	.	NC_007779	3134097	0	T	G	deleted=1	frequency=1	genotype_quality=1.0	new_cov=1/0	quality=1.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	2352	.	NC_007779	3147577	0	C	G	bias_e_value=137887	bias_p_value=0.0296766	fisher_strand_p_value=0.00466786	frequency=3.195000e-02	genotype_quality=664.0	ks_quality_p_value=0.998245	log10_base_likelihood=-6.1909	log10_qual_likelihood_position_model=9.08335	log10_strand_likelihood_position_model=2.36154	new_cov=8/1	polymorphism_quality=0.7	quality=0.7	quality_position_model=Inf	ref_cov=79/119	reject=EVALUE,POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=87/121
RA	2353	.	NC_007779	3152412	0	T	G	bias_e_value=0.000314724	bias_p_value=6.7736e-11	fisher_strand_p_value=2.44197e-12	frequency=6.662512e-02	genotype_quality=652.3	ks_quality_p_value=1	log10_base_likelihood=-6.65596	log10_qual_likelihood_position_model=29.7066	log10_strand_likelihood_position_model=11.6123	new_cov=32/0	polymorphism_quality=1.1	quality=1.1	quality_position_model=Inf	ref_cov=73/116	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=105/116
RA	2354	.	NC_007779	3160153	0	G	C	bias_e_value=8.17291e-07	bias_p_value=1.759e-13	fisher_strand_p_value=5.41924e-15	frequency=1.129165e-01	genotype_quality=506.5	ks_quality_p_value=0.957703	log10_base_likelihood=-31.3397	log10_qual_likelihood_position_model=17.2553	log10_strand_likelihood_position_model=14.2661	new_cov=17/0	polymorphism_quality=26.2	quality=26.2	quality_position_model=Inf	ref_cov=12/120	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=29/120
RA	2355	.	NC_007779	3162929	0	G	C	bias_e_value=8.24228	bias_p_value=1.77393e-06	fisher_strand_p_value=1.57543e-07	frequency=7.720613e-02	genotype_quality=653.1	ks_quality_p_value=0.659241	log10_base_likelihood=-14.8824	log10_qual_likelihood_position_model=23.4873	log10_strand_likelihood_position_model=6.8026	new_cov=20/0	polymorphism_quality=9.5	quality=9.5	quality_position_model=Inf	ref_cov=84/112	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=104/112
RA	2356	.	NC_007779	3195467	0	A	C	bias_e_value=0.123518	bias_p_value=2.6584e-08	fisher_strand_p_value=1.2358e-09	frequency=8.430910e-02	genotype_quality=624.1	ks_quality_p_value=1	log10_base_likelihood=-9.86049	log10_qual_likelihood_position_model=23.2419	log10_strand_likelihood_position_model=8.90805	new_cov=0/24	polymorphism_quality=4.4	quality=4.4	quality_position_model=Inf	ref_cov=119/76	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=119/100
RA	2357	.	NC_007779	3212355	0	G	C	bias_e_value=0.00229299	bias_p_value=4.93505e-10	fisher_strand_p_value=2.12254e-11	frequency=9.576988e-02	genotype_quality=640.1	ks_quality_p_value=0.905576	log10_base_likelihood=-20.1947	log10_qual_likelihood_position_model=21.8797	log10_strand_likelihood_position_model=10.6731	new_cov=21/0	polymorphism_quality=14.9	quality=14.9	quality_position_model=Inf	ref_cov=47/128	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=68/128
RA	2358	.	NC_007779	3220025	0	C	A	bias_e_value=169.898	bias_p_value=3.6566e-05	fisher_strand_p_value=2.64602e-06	frequency=3.757763e-02	genotype_quality=906.4	ks_quality_p_value=0.998191	log10_base_likelihood=-6.00858	log10_qual_likelihood_position_model=16.5941	log10_strand_likelihood_position_model=5.57741	new_cov=16/0	polymorphism_quality=0.5	quality=0.5	quality_position_model=Inf	ref_cov=111/147	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=128/147
RA	2359	.	NC_007779	3231285	0	C	A	bias_e_value=36.3165	bias_p_value=7.81616e-06	fisher_strand_p_value=5.04263e-07	frequency=7.710743e-02	genotype_quality=520.1	ks_quality_p_value=1	log10_base_likelihood=-13.0182	log10_qual_likelihood_position_model=13.7188	log10_strand_likelihood_position_model=6.29734	new_cov=0/12	polymorphism_quality=7.6	quality=7.6	quality_position_model=Inf	ref_cov=97/35	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=97/47
RA	2360	.	NC_007779	3231302	0	C	G	bias_e_value=0.002252	bias_p_value=4.84684e-10	fisher_strand_p_value=1.90478e-11	frequency=1.544657e-01	genotype_quality=461.2	ks_quality_p_value=0.990345	log10_base_likelihood=-31.0017	log10_qual_likelihood_position_model=20.8472	log10_strand_likelihood_position_model=10.7202	new_cov=0/26	polymorphism_quality=25.8	quality=25.8	quality_position_model=Inf	ref_cov=90/44	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=91/70
RA	2361	.	NC_007779	3231832	1	.	G	bias_e_value=714065	bias_p_value=0.153684	fisher_strand_p_value=0.0478971	frequency=1.485157e-02	genotype_quality=983.3	ks_quality_p_value=0.73915	log10_base_likelihood=-12.2769	log10_qual_likelihood_position_model=1.35589	log10_strand_likelihood_position_model=1.31969	new_cov=3/0	polymorphism_quality=6.9	quality=6.9	quality_position_model=1.2773e-11	ref_cov=71/128	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=74/128
RA	2362	.	NC_007779	3238322	0	T	C	bias_e_value=4085.81	bias_p_value=0.000879362	fisher_strand_p_value=8.47513e-05	frequency=7.166672e-02	genotype_quality=260.9	ks_quality_p_value=1	log10_base_likelihood=-5.97937	log10_qual_likelihood_position_model=8.37117	log10_strand_likelihood_position_model=4.07185	new_cov=8/0	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=23/61	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=31/61
RA	2363	.	NC_007779	3258181	0	G	C	bias_e_value=170.144	bias_p_value=3.66189e-05	fisher_strand_p_value=2.65194e-06	frequency=3.752041e-02	genotype_quality=526.7	ks_quality_p_value=0.997518	log10_base_likelihood=-6.35129	log10_qual_likelihood_position_model=7.5328	log10_strand_likelihood_position_model=5.57644	new_cov=6/0	polymorphism_quality=0.8	quality=0.8	quality_position_model=Inf	ref_cov=13/123	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=19/123
RA	2364	.	NC_007779	3259711	0	A	C	bias_e_value=2.61252e-11	bias_p_value=5.62276e-18	fisher_strand_p_value=1.2631e-19	frequency=1.334672e-01	genotype_quality=493.8	ks_quality_p_value=1	log10_base_likelihood=-14.3016	log10_qual_likelihood_position_model=29.4283	log10_strand_likelihood_position_model=18.8986	new_cov=0/45	polymorphism_quality=8.9	quality=8.9	quality_position_model=Inf	ref_cov=113/48	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=113/94
RA	2365	.	NC_007779	3266843	0	C	G	bias_e_value=2.76453	bias_p_value=5.94992e-07	fisher_strand_p_value=3.26587e-08	frequency=6.578112e-02	genotype_quality=530.4	ks_quality_p_value=0.998916	log10_base_likelihood=-7.67009	log10_qual_likelihood_position_model=11.8397	log10_strand_likelihood_position_model=7.486	new_cov=0/11	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=113/24	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=113/36
RA	2366	.	NC_007779	3267102	0	A	.	bias_e_value=3233560	bias_p_value=0.695937	fisher_strand_p_value=1	frequency=1.703644e-02	genotype_quality=710.6	ks_quality_p_value=0.330071	log10_base_likelihood=-8.58644	log10_qual_likelihood_position_model=2.07589	log10_strand_likelihood_position_model=0.369825	new_cov=1/2	polymorphism_quality=3.1	quality=3.1	quality_position_model=4.56114e-08	ref_cov=73/100	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=74/102
RA	2367	.	NC_007779	3270195	0	G	T	bias_e_value=1242870	bias_p_value=0.267494	fisher_strand_p_value=0.0829067	frequency=3.087139e-02	genotype_quality=1056.3	ks_quality_p_value=0.896376	log10_base_likelihood=-15.8821	log10_qual_likelihood_position_model=4.97468	log10_strand_likelihood_position_model=1.22348	new_cov=1/7	polymorphism_quality=10.5	quality=10.5	quality_position_model=1.05168e-11	ref_cov=112/138	reject=POLYMORPHISM_STRAND	tot_cov=113/145
RA	2368	.	NC_007779	3270206	0	G	T	bias_e_value=1959210	bias_p_value=0.421668	fisher_strand_p_value=0.143281	frequency=3.049755e-02	genotype_quality=1056.0	ks_quality_p_value=1	log10_base_likelihood=-14.2288	log10_qual_likelihood_position_model=5.69586	log10_strand_likelihood_position_model=1.17159	new_cov=1/7	polymorphism_quality=8.9	quality=8.9	quality_position_model=2.51938e-09	ref_cov=109/141	reject=POLYMORPHISM_STRAND	tot_cov=110/148
RA	2369	.	NC_007779	3270212	0	A	G	bias_e_value=1350860	bias_p_value=0.290736	fisher_strand_p_value=0.144257	frequency=2.967358e-02	genotype_quality=999.2	ks_quality_p_value=0.578587	log10_base_likelihood=-17.408	log10_qual_likelihood_position_model=4.25453	log10_strand_likelihood_position_model=1.14364	new_cov=1/7	polymorphism_quality=12.1	quality=12.1	quality_position_model=4.47687e-14	ref_cov=112/149	reject=POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=113/156
RA	2370	.	NC_007779	3270220	0	G	T	bias_e_value=1967230	bias_p_value=0.423395	fisher_strand_p_value=0.14579	frequency=2.958012e-02	genotype_quality=1088.8	ks_quality_p_value=0.988895	log10_base_likelihood=-15.3087	log10_qual_likelihood_position_model=4.52528	log10_strand_likelihood_position_model=1.11191	new_cov=1/7	polymorphism_quality=10.0	quality=10.0	quality_position_model=1.08288e-11	ref_cov=110/151	reject=POLYMORPHISM_STRAND	tot_cov=111/158
RA	2371	.	NC_007779	3270221	0	T	A	bias_e_value=1979790	bias_p_value=0.426096	fisher_strand_p_value=0.145961	frequency=2.895927e-02	genotype_quality=1051.0	ks_quality_p_value=0.997314	log10_base_likelihood=-18.8602	log10_qual_likelihood_position_model=4.39368	log10_strand_likelihood_position_model=1.11069	new_cov=1/7	polymorphism_quality=13.6	quality=13.6	quality_position_model=1.91707e-15	ref_cov=112/154	reject=POLYMORPHISM_STRAND	tot_cov=113/161
RA	2372	.	NC_007779	3270225	0	A	.	bias_e_value=1678890	bias_p_value=0.361337	fisher_strand_p_value=0.14653	frequency=2.918434e-02	genotype_quality=1027.8	ks_quality_p_value=0.777309	log10_base_likelihood=-24.1057	log10_qual_likelihood_position_model=4.5548	log10_strand_likelihood_position_model=1.10168	new_cov=1/7	polymorphism_quality=18.9	quality=18.9	quality_position_model=1.32106e-20	ref_cov=111/154	reject=POLYMORPHISM_STRAND	tot_cov=112/162
RA	2373	.	NC_007779	3270226	0	C	G	bias_e_value=1765370	bias_p_value=0.379949	fisher_strand_p_value=0.145459	frequency=2.905846e-02	genotype_quality=1109.1	ks_quality_p_value=0.842956	log10_base_likelihood=-20.5704	log10_qual_likelihood_position_model=3.43792	log10_strand_likelihood_position_model=1.11968	new_cov=1/7	polymorphism_quality=15.3	quality=15.3	quality_position_model=3.867e-18	ref_cov=113/154	reject=POLYMORPHISM_STRAND	tot_cov=114/161
RA	2374	.	NC_007779	3270228	0	G	T	bias_e_value=1903170	bias_p_value=0.409607	fisher_strand_p_value=0.145192	frequency=2.927971e-02	genotype_quality=1097.1	ks_quality_p_value=0.944555	log10_base_likelihood=-15.4505	log10_qual_likelihood_position_model=3.67826	log10_strand_likelihood_position_model=1.12364	new_cov=1/7	polymorphism_quality=10.1	quality=10.1	quality_position_model=1.08995e-12	ref_cov=112/152	reject=POLYMORPHISM_STRAND	tot_cov=113/159
RA	2375	.	NC_007779	3270229	0	A	G	bias_e_value=1300460	bias_p_value=0.279889	fisher_strand_p_value=0.14471	frequency=2.903080e-02	genotype_quality=1010.8	ks_quality_p_value=0.546907	log10_base_likelihood=-17.3799	log10_qual_likelihood_position_model=3.47157	log10_strand_likelihood_position_model=1.1352	new_cov=1/7	polymorphism_quality=12.1	quality=12.1	quality_position_model=7.49422e-15	ref_cov=114/153	reject=POLYMORPHISM_STRAND	tot_cov=115/160
RA	2376	.	NC_007779	3270231	0	T	A	bias_e_value=1220190	bias_p_value=0.262613	fisher_strand_p_value=0.145104	frequency=2.915382e-02	genotype_quality=1063.8	ks_quality_p_value=0.499276	log10_base_likelihood=-19.5686	log10_qual_likelihood_position_model=6.56603	log10_strand_likelihood_position_model=1.12617	new_cov=1/7	polymorphism_quality=14.3	quality=14.3	quality_position_model=6.11996e-14	ref_cov=113/153	reject=POLYMORPHISM_STRAND	tot_cov=114/160
RA	2377	.	NC_007779	3270232	0	G	A	bias_e_value=1739670	bias_p_value=0.374418	fisher_strand_p_value=0.144648	frequency=2.875996e-02	genotype_quality=1081.7	ks_quality_p_value=0.829554	log10_base_likelihood=-15.5506	log10_qual_likelihood_position_model=5.28629	log10_strand_likelihood_position_model=1.13763	new_cov=1/7	polymorphism_quality=10.2	quality=10.2	quality_position_model=3.90378e-11	ref_cov=115/154	reject=POLYMORPHISM_STRAND	tot_cov=116/161
RA	2378	.	NC_007779	3270234	0	T	C	bias_e_value=1956950	bias_p_value=0.421182	fisher_strand_p_value=0.143531	frequency=2.877426e-02	genotype_quality=1010.7	ks_quality_p_value=0.99652	log10_base_likelihood=-15.4555	log10_qual_likelihood_position_model=6.15116	log10_strand_likelihood_position_model=1.18267	new_cov=1/7	polymorphism_quality=10.1	quality=10.1	quality_position_model=4.17538e-10	ref_cov=117/150	reject=POLYMORPHISM_STRAND	tot_cov=118/157
RA	2379	.	NC_007779	3270237	0	C	T	bias_e_value=1953030	bias_p_value=0.420337	fisher_strand_p_value=0.143808	frequency=2.995300e-02	genotype_quality=1042.7	ks_quality_p_value=0.991578	log10_base_likelihood=-15.0774	log10_qual_likelihood_position_model=6.1368	log10_strand_likelihood_position_model=1.15496	new_cov=1/7	polymorphism_quality=9.7	quality=9.7	quality_position_model=9.23541e-10	ref_cov=111/146	reject=POLYMORPHISM_STRAND	tot_cov=113/153
RA	2380	.	NC_007779	3270238	0	A	T	bias_e_value=1927940	bias_p_value=0.414937	fisher_strand_p_value=0.145287	frequency=2.957153e-02	genotype_quality=1045.6	ks_quality_p_value=0.962497	log10_base_likelihood=-19.089	log10_qual_likelihood_position_model=5.15071	log10_strand_likelihood_position_model=1.12107	new_cov=1/7	polymorphism_quality=13.8	quality=13.8	quality_position_model=6.75961e-15	ref_cov=111/151	reject=POLYMORPHISM_STRAND	tot_cov=112/158
RA	2381	.	NC_007779	3270242	0	G	C	bias_e_value=117992	bias_p_value=0.0253946	fisher_strand_p_value=0.144239	frequency=3.097916e-02	genotype_quality=1032.4	ks_quality_p_value=0.0268663	log10_base_likelihood=-21.5981	log10_qual_likelihood_position_model=5.49939	log10_strand_likelihood_position_model=1.13791	new_cov=1/7	polymorphism_quality=16.3	quality=16.3	quality_position_model=4.50539e-17	ref_cov=107/143	reject=POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=108/150
RA	2382	.	NC_007779	3270245	1	.	T	bias_e_value=26532.2	bias_p_value=0.00571036	fisher_strand_p_value=0.146483	frequency=3.174591e-02	genotype_quality=1159.8	ks_quality_p_value=0.00470853	log10_base_likelihood=-35.792	log10_qual_likelihood_position_model=6.37498	log10_strand_likelihood_position_model=1.09635	new_cov=1/7	polymorphism_quality=30.6	quality=30.6	quality_position_model=1.43918e-30	ref_cov=102/142	reject=POLYMORPHISM_STRAND	tot_cov=103/149
RA	2383	.	NC_007779	3270265	0	C	T	bias_e_value=7379.83	bias_p_value=0.00158831	fisher_strand_p_value=0.160095	frequency=3.040791e-02	genotype_quality=1015.1	ks_quality_p_value=0.00102077	log10_base_likelihood=-16.5948	log10_qual_likelihood_position_model=6.26626	log10_strand_likelihood_position_model=0.986919	new_cov=1/7	polymorphism_quality=11.3	quality=11.3	quality_position_model=2.35342e-11	ref_cov=99/155	reject=POLYMORPHISM_STRAND	tot_cov=100/162
RA	2384	.	NC_007779	3270275	0	T	C	bias_e_value=460568	bias_p_value=0.099125	fisher_strand_p_value=0.157659	frequency=3.107643e-02	genotype_quality=923.6	ks_quality_p_value=0.128292	log10_base_likelihood=-18.5304	log10_qual_likelihood_position_model=5.29876	log10_strand_likelihood_position_model=1.00089	new_cov=1/7	polymorphism_quality=13.2	quality=13.2	quality_position_model=2.66827e-14	ref_cov=98/151	reject=POLYMORPHISM_STRAND	tot_cov=99/158
RA	2385	.	NC_007779	3270279	0	T	G	bias_e_value=668288	bias_p_value=0.143831	fisher_strand_p_value=0.151106	frequency=2.970886e-02	genotype_quality=1022.9	ks_quality_p_value=0.215022	log10_base_likelihood=-22.7064	log10_qual_likelihood_position_model=6.49933	log10_strand_likelihood_position_model=1.05037	new_cov=1/7	polymorphism_quality=17.4	quality=17.4	quality_position_model=2.8516e-17	ref_cov=106/155	reject=POLYMORPHISM_STRAND	tot_cov=107/162
RA	2386	.	NC_007779	3280326	0	A	C	bias_e_value=2.82766e-13	bias_p_value=6.08579e-20	fisher_strand_p_value=1.23845e-21	frequency=1.232252e-01	genotype_quality=532.0	ks_quality_p_value=1	log10_base_likelihood=-16.103	log10_qual_likelihood_position_model=33.7449	log10_strand_likelihood_position_model=20.9071	new_cov=0/38	polymorphism_quality=10.8	quality=10.8	quality_position_model=Inf	ref_cov=130/33	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=130/71
RA	2387	.	NC_007779	3300073	0	T	G	bias_e_value=1.85997e-06	bias_p_value=4.00309e-13	fisher_strand_p_value=1.21143e-14	frequency=1.571980e-01	genotype_quality=387.8	ks_quality_p_value=1	log10_base_likelihood=-18.9458	log10_qual_likelihood_position_model=31.6081	log10_strand_likelihood_position_model=13.9167	new_cov=36/0	polymorphism_quality=13.6	quality=13.6	quality_position_model=Inf	ref_cov=42/85	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=78/85
RA	2388	.	NC_007779	3306717	0	G	A	bias_e_value=108.295	bias_p_value=2.33076e-05	fisher_strand_p_value=0.00476308	frequency=3.339577e-02	genotype_quality=1028.5	ks_quality_p_value=0.000341501	log10_base_likelihood=-19.9248	log10_qual_likelihood_position_model=5.77884	log10_strand_likelihood_position_model=2.38439	new_cov=9/0	polymorphism_quality=14.6	quality=14.6	quality_position_model=8.00989e-14	ref_cov=139/121	reject=POLYMORPHISM_STRAND,KS_QUALITY_P_VALUE	tot_cov=148/121
RA	2389	.	NC_007779	3306720	0	A	G	bias_e_value=202.782	bias_p_value=4.36434e-05	fisher_strand_p_value=0.00491681	frequency=3.400993e-02	genotype_quality=960.3	ks_quality_p_value=0.00065012	log10_base_likelihood=-22.8243	log10_qual_likelihood_position_model=5.59356	log10_strand_likelihood_position_model=2.36462	new_cov=9/0	polymorphism_quality=17.6	quality=17.6	quality_position_model=5.62023e-17	ref_cov=137/118	reject=POLYMORPHISM_STRAND,KS_QUALITY_P_VALUE	tot_cov=147/118
RA	2390	.	NC_007779	3306726	0	A	G	bias_e_value=345.104	bias_p_value=7.42745e-05	fisher_strand_p_value=0.00382968	frequency=3.515053e-02	genotype_quality=938.9	ks_quality_p_value=0.0014829	log10_base_likelihood=-21.5068	log10_qual_likelihood_position_model=7.64063	log10_strand_likelihood_position_model=2.54217	new_cov=9/0	polymorphism_quality=16.2	quality=16.2	quality_position_model=2.23432e-13	ref_cov=126/120	reject=POLYMORPHISM_STRAND	tot_cov=135/121
RA	2391	.	NC_007779	3306732	0	A	G	bias_e_value=2449.23	bias_p_value=0.000527133	fisher_strand_p_value=0.00366426	frequency=3.482819e-02	genotype_quality=944.8	ks_quality_p_value=0.0131491	log10_base_likelihood=-21.2558	log10_qual_likelihood_position_model=6.6071	log10_strand_likelihood_position_model=2.58862	new_cov=9/0	polymorphism_quality=16.0	quality=16.0	quality_position_model=3.9797e-14	ref_cov=126/123	reject=POLYMORPHISM_STRAND	tot_cov=135/123
RA	2392	.	NC_007779	3306738	0	A	G	bias_e_value=54249.9	bias_p_value=0.0116759	fisher_strand_p_value=0.00349393	frequency=3.648567e-02	genotype_quality=910.6	ks_quality_p_value=0.447972	log10_base_likelihood=-21.7757	log10_qual_likelihood_position_model=4.31234	log10_strand_likelihood_position_model=2.64583	new_cov=9/0	polymorphism_quality=16.5	quality=16.5	quality_position_model=6.29568e-17	ref_cov=118/119	reject=POLYMORPHISM_STRAND	tot_cov=128/119
RA	2393	.	NC_007779	3306740	0	A	T	bias_e_value=105465	bias_p_value=0.0226986	fisher_strand_p_value=0.00340496	frequency=3.668690e-02	genotype_quality=937.3	ks_quality_p_value=0.997155	log10_base_likelihood=-16.2003	log10_qual_likelihood_position_model=12.6695	log10_strand_likelihood_position_model=2.69363	new_cov=9/0	polymorphism_quality=10.9	quality=10.9	quality_position_model=0.0220882	ref_cov=115/119	reject=POLYMORPHISM_STRAND	tot_cov=124/119
RA	2394	.	NC_007779	3306741	0	A	G	bias_e_value=104702	bias_p_value=0.0225342	fisher_strand_p_value=0.00340496	frequency=3.681183e-02	genotype_quality=892.1	ks_quality_p_value=0.988669	log10_base_likelihood=-17.6274	log10_qual_likelihood_position_model=8.8386	log10_strand_likelihood_position_model=2.69363	new_cov=9/0	polymorphism_quality=12.3	quality=12.3	quality_position_model=5.0833e-08	ref_cov=115/119	reject=POLYMORPHISM_STRAND	tot_cov=124/119
RA	2395	.	NC_007779	3306744	0	C	G	bias_e_value=107182	bias_p_value=0.023068	fisher_strand_p_value=0.00346035	frequency=3.662682e-02	genotype_quality=985.0	ks_quality_p_value=1	log10_base_likelihood=-21.3055	log10_qual_likelihood_position_model=6.90351	log10_strand_likelihood_position_model=2.66157	new_cov=9/0	polymorphism_quality=16.0	quality=16.0	quality_position_model=8.41677e-14	ref_cov=117/119	reject=POLYMORPHISM_STRAND	tot_cov=126/119
RA	2396	.	NC_007779	3306745	0	A	T	bias_e_value=105814	bias_p_value=0.0227736	fisher_strand_p_value=0.00340846	frequency=3.544617e-02	genotype_quality=940.9	ks_quality_p_value=1	log10_base_likelihood=-15.6541	log10_qual_likelihood_position_model=11.7234	log10_strand_likelihood_position_model=2.69375	new_cov=9/0	polymorphism_quality=10.3	quality=10.3	quality_position_model=0.00744728	ref_cov=116/120	reject=POLYMORPHISM_STRAND	tot_cov=125/120
RA	2397	.	NC_007779	3306746	0	T	G	bias_e_value=447662	bias_p_value=0.0963474	fisher_strand_p_value=0.0195176	frequency=3.777981e-02	genotype_quality=929.5	ks_quality_p_value=1	log10_base_likelihood=-22.1192	log10_qual_likelihood_position_model=9.47864	log10_strand_likelihood_position_model=1.95935	new_cov=9/1	polymorphism_quality=16.9	quality=16.9	quality_position_model=1.00962e-12	ref_cov=118/119	reject=POLYMORPHISM_STRAND	tot_cov=127/120
RA	2398	.	NC_007779	3306750	0	G	A	bias_e_value=696171	bias_p_value=0.149832	fisher_strand_p_value=0.0343142	frequency=4.879999e-02	genotype_quality=918.6	ks_quality_p_value=0.998306	log10_base_likelihood=-22.5	log10_qual_likelihood_position_model=10.54	log10_strand_likelihood_position_model=1.78262	new_cov=10/2	polymorphism_quality=17.2	quality=17.2	quality_position_model=3.29651e-12	ref_cov=114/118	tot_cov=124/120
RA	2399	.	NC_007779	3306753	0	A	G	bias_e_value=690546	bias_p_value=0.148622	fisher_strand_p_value=0.0341345	frequency=4.959869e-02	genotype_quality=861.4	ks_quality_p_value=0.993066	log10_base_likelihood=-27.3432	log10_qual_likelihood_position_model=6.79437	log10_strand_likelihood_position_model=1.79728	new_cov=10/2	polymorphism_quality=22.1	quality=22.1	quality_position_model=6.53345e-21	ref_cov=112/117	tot_cov=122/119
RA	2400	.	NC_007779	3306762	0	A	G	bias_e_value=690338	bias_p_value=0.148577	fisher_strand_p_value=0.0342367	frequency=4.842854e-02	genotype_quality=869.1	ks_quality_p_value=0.989716	log10_base_likelihood=-26.7745	log10_qual_likelihood_position_model=9.00722	log10_strand_likelihood_position_model=1.79715	new_cov=10/2	polymorphism_quality=21.6	quality=21.6	quality_position_model=4.27172e-18	ref_cov=115/120	tot_cov=125/122
RA	2401	.	NC_007779	3306765	0	T	C	bias_e_value=720381	bias_p_value=0.155043	fisher_strand_p_value=0.0358695	frequency=4.690742e-02	genotype_quality=879.4	ks_quality_p_value=0.998361	log10_base_likelihood=-23.482	log10_qual_likelihood_position_model=8.1671	log10_strand_likelihood_position_model=1.6985	new_cov=10/2	polymorphism_quality=18.2	quality=18.2	quality_position_model=1.04232e-15	ref_cov=119/117	tot_cov=129/119
RA	2402	.	NC_007779	3306768	0	C	G	bias_e_value=691578	bias_p_value=0.148844	fisher_strand_p_value=0.0340216	frequency=4.926920e-02	genotype_quality=960.1	ks_quality_p_value=0.998291	log10_base_likelihood=-30.9288	log10_qual_likelihood_position_model=7.75139	log10_strand_likelihood_position_model=1.82682	new_cov=10/2	polymorphism_quality=25.7	quality=25.7	quality_position_model=1.54347e-23	ref_cov=112/119	tot_cov=122/121
RA	2403	.	NC_007779	3306769	0	A	T	bias_e_value=697083	bias_p_value=0.150029	fisher_strand_p_value=0.0343142	frequency=4.816103e-02	genotype_quality=930.0	ks_quality_p_value=1	log10_base_likelihood=-23.3415	log10_qual_likelihood_position_model=11.5771	log10_strand_likelihood_position_model=1.78262	new_cov=10/2	polymorphism_quality=18.1	quality=18.1	quality_position_model=5.22032e-12	ref_cov=114/118	tot_cov=124/120
RA	2404	.	NC_007779	3306772	0	C	G	bias_e_value=658487	bias_p_value=0.141722	fisher_strand_p_value=0.0341647	frequency=4.834175e-02	genotype_quality=985.2	ks_quality_p_value=0.933047	log10_base_likelihood=-32.0344	log10_qual_likelihood_position_model=8.38723	log10_strand_likelihood_position_model=1.81157	new_cov=10/2	polymorphism_quality=26.9	quality=26.9	quality_position_model=4.99691e-24	ref_cov=115/121	tot_cov=125/123
RA	2405	.	NC_007779	3306773	0	T	A	bias_e_value=693872	bias_p_value=0.149338	fisher_strand_p_value=0.0342367	frequency=4.849339e-02	genotype_quality=920.8	ks_quality_p_value=0.996286	log10_base_likelihood=-29.3088	log10_qual_likelihood_position_model=9.92341	log10_strand_likelihood_position_model=1.79715	new_cov=10/2	polymorphism_quality=24.1	quality=24.1	quality_position_model=9.8185e-20	ref_cov=115/120	tot_cov=125/122
RA	2406	.	NC_007779	3306774	0	G	A	bias_e_value=700790	bias_p_value=0.150826	fisher_strand_p_value=0.0345511	frequency=4.641581e-02	genotype_quality=936.3	ks_quality_p_value=1	log10_base_likelihood=-21.9733	log10_qual_likelihood_position_model=11.1507	log10_strand_likelihood_position_model=1.76861	new_cov=10/2	polymorphism_quality=16.7	quality=16.7	quality_position_model=4.63266e-11	ref_cov=117/120	tot_cov=127/122
RA	2407	.	NC_007779	3306777	0	A	G	bias_e_value=723289	bias_p_value=0.155669	fisher_strand_p_value=0.0362419	frequency=4.874897e-02	genotype_quality=854.0	ks_quality_p_value=0.993296	log10_base_likelihood=-25.6063	log10_qual_likelihood_position_model=8.27937	log10_strand_likelihood_position_model=1.68344	new_cov=10/2	polymorphism_quality=20.4	quality=20.4	quality_position_model=9.15409e-18	ref_cov=118/115	tot_cov=128/118
RA	2408	.	NC_007779	3306780	0	C	G	bias_e_value=747676	bias_p_value=0.160917	fisher_strand_p_value=0.0376038	frequency=4.855680e-02	genotype_quality=982.4	ks_quality_p_value=0.999583	log10_base_likelihood=-31.2298	log10_qual_likelihood_position_model=6.92267	log10_strand_likelihood_position_model=1.64284	new_cov=10/2	polymorphism_quality=26.0	quality=26.0	quality_position_model=7.27915e-25	ref_cov=120/114	tot_cov=130/116
RA	2409	.	NC_007779	3306798	0	G	A	bias_e_value=3964250	bias_p_value=0.8532	fisher_strand_p_value=0.510305	frequency=3.535557e-02	genotype_quality=981.5	ks_quality_p_value=0.998806	log10_base_likelihood=-13.6342	log10_qual_likelihood_position_model=9.04302	log10_strand_likelihood_position_model=0.698526	new_cov=6/3	polymorphism_quality=8.3	quality=8.3	quality_position_model=9.97248e-06	ref_cov=128/113	tot_cov=134/116
RA	2410	.	NC_007779	3306801	0	T	A	bias_e_value=4351190	bias_p_value=0.936478	fisher_strand_p_value=0.66641	frequency=1.978970e-02	genotype_quality=974.5	ks_quality_p_value=0.998543	log10_base_likelihood=-8.85744	log10_qual_likelihood_position_model=6.57956	log10_strand_likelihood_position_model=0.536664	new_cov=2/3	polymorphism_quality=3.4	quality=3.4	quality_position_model=0.00201543	ref_cov=132/114	tot_cov=134/117
RA	2411	.	NC_007779	3306804	0	A	C	bias_e_value=4353500	bias_p_value=0.936976	fisher_strand_p_value=0.667107	frequency=1.905918e-02	genotype_quality=965.0	ks_quality_p_value=0.999336	log10_base_likelihood=-9.74865	log10_qual_likelihood_position_model=7.09731	log10_strand_likelihood_position_model=0.534734	new_cov=2/3	polymorphism_quality=4.3	quality=4.3	quality_position_model=0.000780615	ref_cov=130/113	tot_cov=132/116
RA	2412	.	NC_007779	3306807	0	G	A	bias_e_value=3132390	bias_p_value=0.674164	fisher_strand_p_value=0.322219	frequency=1.774788e-02	genotype_quality=884.4	ks_quality_p_value=0.964989	log10_base_likelihood=-6.51853	log10_qual_likelihood_position_model=4.26463	log10_strand_likelihood_position_model=0.722234	new_cov=1/3	polymorphism_quality=1.0	quality=1.0	quality_position_model=0.00344919	ref_cov=124/95	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=125/98
RA	2413	.	NC_007779	3306816	0	A	C	bias_e_value=1360890	bias_p_value=0.292895	fisher_strand_p_value=0.0886427	frequency=1.291180e-02	genotype_quality=914.6	ks_quality_p_value=0.951416	log10_base_likelihood=-7.17724	log10_qual_likelihood_position_model=2.28119	log10_strand_likelihood_position_model=1.05236	new_cov=0/3	polymorphism_quality=1.7	quality=1.7	quality_position_model=1.1227e-05	ref_cov=128/101	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=128/104
RA	2414	.	NC_007779	3306831	0	A	G	bias_e_value=289517	bias_p_value=0.0623109	fisher_strand_p_value=0.0996551	frequency=1.353168e-02	genotype_quality=834.5	ks_quality_p_value=0.114183	log10_base_likelihood=-6.06126	log10_qual_likelihood_position_model=2.73991	log10_strand_likelihood_position_model=1.0015	new_cov=0/3	polymorphism_quality=0.5	quality=0.5	quality_position_model=0.000469751	ref_cov=118/100	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=118/103
RA	2415	.	NC_007779	3306837	0	A	G	bias_e_value=1053030	bias_p_value=0.226637	fisher_strand_p_value=0.0894626	frequency=1.254654e-02	genotype_quality=918.9	ks_quality_p_value=0.662078	log10_base_likelihood=-5.63857	log10_qual_likelihood_position_model=1.88778	log10_strand_likelihood_position_model=1.04836	new_cov=0/3	polymorphism_quality=0.1	quality=0.1	quality_position_model=0.000182041	ref_cov=131/104	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=131/107
RA	2416	.	NC_007779	3310088	0	G	C	bias_e_value=0.0206659	bias_p_value=4.44779e-09	fisher_strand_p_value=1.90216e-10	frequency=8.083487e-02	genotype_quality=468.6	ks_quality_p_value=1	log10_base_likelihood=-12.7294	log10_qual_likelihood_position_model=13.3139	log10_strand_likelihood_position_model=9.72075	new_cov=0/11	polymorphism_quality=7.3	quality=7.3	quality_position_model=Inf	ref_cov=104/10	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=104/21
RA	2417	.	NC_007779	3314445	0	C	G	bias_e_value=3867550	bias_p_value=0.832387	fisher_strand_p_value=1	frequency=9.208345e-02	genotype_quality=821.2	ks_quality_p_value=0.480112	log10_base_likelihood=-65.8624	log10_qual_likelihood_position_model=5.81306	log10_strand_likelihood_position_model=0.743847	new_cov=10/11	polymorphism_quality=60.8	quality=60.8	quality_position_model=1.03391e-61	ref_cov=97/110	tot_cov=107/121
RA	2418	.	NC_007779	3314448	0	A	G	bias_e_value=249483	bias_p_value=0.0536946	fisher_strand_p_value=0.826613	frequency=9.972572e-02	genotype_quality=645.8	ks_quality_p_value=0.0114818	log10_base_likelihood=-59.6884	log10_qual_likelihood_position_model=13.3637	log10_strand_likelihood_position_model=0.786421	new_cov=10/13	polymorphism_quality=54.6	quality=54.6	quality_position_model=6.89524e-48	ref_cov=96/106	tot_cov=106/120
RA	2419	.	NC_007779	3314454	0	G	A	bias_e_value=1876730	bias_p_value=0.403917	fisher_strand_p_value=0.526082	frequency=1.162100e-01	genotype_quality=681.3	ks_quality_p_value=0.25527	log10_base_likelihood=-68.5128	log10_qual_likelihood_position_model=7.95312	log10_strand_likelihood_position_model=0.887374	new_cov=10/15	polymorphism_quality=63.5	quality=63.5	quality_position_model=4.42933e-62	ref_cov=91/99	tot_cov=101/114
RA	2420	.	NC_007779	3314457	0	G	A	bias_e_value=2689450	bias_p_value=0.578832	fisher_strand_p_value=0.310895	frequency=1.221089e-01	genotype_quality=697.2	ks_quality_p_value=0.76371	log10_base_likelihood=-75.553	log10_qual_likelihood_position_model=6.30819	log10_strand_likelihood_position_model=1.02447	new_cov=10/17	polymorphism_quality=70.6	quality=70.6	quality_position_model=1.17336e-70	ref_cov=93/101	tot_cov=103/118
RA	2421	.	NC_007779	3314460	0	A	T	bias_e_value=3105560	bias_p_value=0.668389	fisher_strand_p_value=0.538245	frequency=1.120152e-01	genotype_quality=837.5	ks_quality_p_value=0.568566	log10_base_likelihood=-86.0646	log10_qual_likelihood_position_model=6.92315	log10_strand_likelihood_position_model=0.924997	new_cov=10/17	polymorphism_quality=81.1	quality=81.1	quality_position_model=1.10612e-80	ref_cov=97/117	tot_cov=107/134
RA	2422	.	NC_007779	3314472	0	G	A	bias_e_value=2071540	bias_p_value=0.445844	fisher_strand_p_value=0.543509	frequency=1.050086e-01	genotype_quality=841.5	ks_quality_p_value=0.287036	log10_base_likelihood=-73.8874	log10_qual_likelihood_position_model=8.25226	log10_strand_likelihood_position_model=0.882192	new_cov=10/17	polymorphism_quality=68.9	quality=68.9	quality_position_model=3.53249e-67	ref_cov=101/129	tot_cov=111/146
RA	2423	.	NC_007779	3314474	0	C	T	bias_e_value=2526340	bias_p_value=0.543727	fisher_strand_p_value=0.540852	frequency=1.045742e-01	genotype_quality=843.3	ks_quality_p_value=0.395416	log10_base_likelihood=-70.9327	log10_qual_likelihood_position_model=8.24687	log10_strand_likelihood_position_model=0.903103	new_cov=10/17	polymorphism_quality=65.9	quality=65.9	quality_position_model=3.37624e-64	ref_cov=103/128	tot_cov=113/145
RA	2424	.	NC_007779	3314475	0	T	C	bias_e_value=1018610	bias_p_value=0.219229	fisher_strand_p_value=0.540057	frequency=1.046104e-01	genotype_quality=803.8	ks_quality_p_value=0.104861	log10_base_likelihood=-77.1567	log10_qual_likelihood_position_model=7.26484	log10_strand_likelihood_position_model=0.91739	new_cov=10/17	polymorphism_quality=72.2	quality=72.2	quality_position_model=2.05558e-71	ref_cov=104/127	tot_cov=114/144
RA	2425	.	NC_007779	3314476	0	A	G	bias_e_value=268397	bias_p_value=0.0577654	fisher_strand_p_value=0.418503	frequency=1.034069e-01	genotype_quality=801.1	ks_quality_p_value=0.0247875	log10_base_likelihood=-74.9882	log10_qual_likelihood_position_model=9.01765	log10_strand_likelihood_position_model=0.958882	new_cov=10/17	polymorphism_quality=70.0	quality=70.0	quality_position_model=1.94312e-67	ref_cov=108/126	tot_cov=118/143
RA	2426	.	NC_007779	3314481	0	G	A	bias_e_value=3476250	bias_p_value=0.74817	fisher_strand_p_value=0.414752	frequency=1.061945e-01	genotype_quality=822.7	ks_quality_p_value=0.917429	log10_base_likelihood=-70.6872	log10_qual_likelihood_position_model=8.77164	log10_strand_likelihood_position_model=0.997376	new_cov=10/17	polymorphism_quality=65.7	quality=65.7	quality_position_model=2.48893e-63	ref_cov=107/120	tot_cov=117/137
RA	2427	.	NC_007779	3314484	0	C	G	bias_e_value=3632160	bias_p_value=0.781725	fisher_strand_p_value=0.417384	frequency=1.070938e-01	genotype_quality=903.7	ks_quality_p_value=0.999048	log10_base_likelihood=-83.8711	log10_qual_likelihood_position_model=10.8677	log10_strand_likelihood_position_model=0.959925	new_cov=10/17	polymorphism_quality=78.9	quality=78.9	quality_position_model=1.71624e-74	ref_cov=104/121	tot_cov=114/138
RA	2428	.	NC_007779	3314487	0	T	C	bias_e_value=3618390	bias_p_value=0.778763	fisher_strand_p_value=0.414031	frequency=1.096497e-01	genotype_quality=767.7	ks_quality_p_value=0.998998	log10_base_likelihood=-72.7319	log10_qual_likelihood_position_model=9.48895	log10_strand_likelihood_position_model=0.991333	new_cov=10/17	polymorphism_quality=67.7	quality=67.7	quality_position_model=1.14264e-64	ref_cov=103/116	tot_cov=113/133
RA	2429	.	NC_007779	3314489	0	C	A	bias_e_value=3638170	bias_p_value=0.78302	fisher_strand_p_value=0.418893	frequency=1.100340e-01	genotype_quality=910.9	ks_quality_p_value=0.998989	log10_base_likelihood=-76.0969	log10_qual_likelihood_position_model=12.0244	log10_strand_likelihood_position_model=0.945332	new_cov=10/17	polymorphism_quality=71.1	quality=71.1	quality_position_model=1.51133e-65	ref_cov=100/118	tot_cov=110/135
RA	2430	.	NC_007779	3314492	0	G	T	bias_e_value=3522600	bias_p_value=0.758147	fisher_strand_p_value=0.53921	frequency=1.123819e-01	genotype_quality=894.8	ks_quality_p_value=0.725095	log10_base_likelihood=-73.2892	log10_qual_likelihood_position_model=9.74315	log10_strand_likelihood_position_model=0.900588	new_cov=10/17	polymorphism_quality=68.3	quality=68.3	quality_position_model=4.59938e-65	ref_cov=95/118	tot_cov=105/135
RA	2431	.	NC_007779	3314493	0	C	G	bias_e_value=890208	bias_p_value=0.191594	fisher_strand_p_value=0.53921	frequency=1.124792e-01	genotype_quality=841.5	ks_quality_p_value=0.0877027	log10_base_likelihood=-86.1573	log10_qual_likelihood_position_model=14.3871	log10_strand_likelihood_position_model=0.900588	new_cov=10/17	polymorphism_quality=81.2	quality=81.2	quality_position_model=2.58201e-73	ref_cov=95/118	reject=SURROUNDING_HOMOPOLYMER	tot_cov=105/135
RA	2432	.	NC_007779	3314511	0	T	G	bias_e_value=63046.4	bias_p_value=0.0135691	fisher_strand_p_value=0.539851	frequency=1.050720e-01	genotype_quality=805.0	ks_quality_p_value=0.00344979	log10_base_likelihood=-99.0235	log10_qual_likelihood_position_model=9.09022	log10_strand_likelihood_position_model=0.923941	new_cov=10/17	polymorphism_quality=94.1	quality=94.1	quality_position_model=1.67108e-91	ref_cov=104/126	tot_cov=114/143
RA	2433	.	NC_007779	3314513	0	A	C	bias_e_value=487672	bias_p_value=0.104958	fisher_strand_p_value=0.542331	frequency=1.038532e-01	genotype_quality=840.8	ks_quality_p_value=0.0400788	log10_base_likelihood=-98.9488	log10_qual_likelihood_position_model=9.38649	log10_strand_likelihood_position_model=0.891396	new_cov=10/17	polymorphism_quality=94.0	quality=94.0	quality_position_model=3.64959e-91	ref_cov=103/130	tot_cov=113/147
RA	2434	.	NC_007779	3314514	0	A	G	bias_e_value=308176	bias_p_value=0.0663267	fisher_strand_p_value=0.542331	frequency=1.038103e-01	genotype_quality=811.6	ks_quality_p_value=0.0226503	log10_base_likelihood=-78.02	log10_qual_likelihood_position_model=9.05882	log10_strand_likelihood_position_model=0.891396	new_cov=10/17	polymorphism_quality=73.0	quality=73.0	quality_position_model=1.66135e-70	ref_cov=103/130	tot_cov=113/147
RA	2435	.	NC_007779	3314523	0	G	C	bias_e_value=1020960	bias_p_value=0.219735	fisher_strand_p_value=0.403419	frequency=1.087751e-01	genotype_quality=837.7	ks_quality_p_value=0.140814	log10_base_likelihood=-87.3647	log10_qual_likelihood_position_model=6.73222	log10_strand_likelihood_position_model=0.992464	new_cov=9/17	polymorphism_quality=82.4	quality=82.4	quality_position_model=4.13377e-82	ref_cov=96/117	tot_cov=105/134
RA	2436	.	NC_007779	3314524	0	G	T	bias_e_value=115807	bias_p_value=0.0249245	fisher_strand_p_value=0.404457	frequency=1.096029e-01	genotype_quality=848.4	ks_quality_p_value=0.00937227	log10_base_likelihood=-70.7304	log10_qual_likelihood_position_model=8.97347	log10_strand_likelihood_position_model=0.97293	new_cov=9/17	polymorphism_quality=65.7	quality=65.7	quality_position_model=3.39365e-63	ref_cov=95/118	tot_cov=105/135
RA	2437	.	NC_007779	3314529	0	C	A	bias_e_value=412029	bias_p_value=0.0886783	fisher_strand_p_value=0.0795784	frequency=7.108545e-02	genotype_quality=908.7	ks_quality_p_value=0.221093	log10_base_likelihood=-47.8832	log10_qual_likelihood_position_model=8.29009	log10_strand_likelihood_position_model=1.40793	new_cov=4/13	polymorphism_quality=42.8	quality=42.8	quality_position_model=1.69644e-40	ref_cov=103/119	tot_cov=107/132
RA	2438	.	NC_007779	3314532	0	C	A	bias_e_value=534340	bias_p_value=0.115003	fisher_strand_p_value=0.0806252	frequency=7.124949e-02	genotype_quality=922.0	ks_quality_p_value=0.302638	log10_base_likelihood=-47.7274	log10_qual_likelihood_position_model=7.32649	log10_strand_likelihood_position_model=1.39243	new_cov=4/13	polymorphism_quality=42.6	quality=42.6	quality_position_model=2.5215e-41	ref_cov=102/119	tot_cov=107/132
RA	2439	.	NC_007779	3314538	0	G	A	bias_e_value=1862.38	bias_p_value=0.000400829	fisher_strand_p_value=0.00397124	frequency=3.576946e-02	genotype_quality=909.5	ks_quality_p_value=0.00897852	log10_base_likelihood=-19.0833	log10_qual_likelihood_position_model=7.58104	log10_strand_likelihood_position_model=2.50934	new_cov=0/9	polymorphism_quality=13.8	quality=13.8	quality_position_model=5.34945e-11	ref_cov=117/125	reject=POLYMORPHISM_STRAND	tot_cov=117/134
RA	2440	.	NC_007779	3314543	0	G	A	bias_e_value=29607.8	bias_p_value=0.00637229	fisher_strand_p_value=0.0296368	frequency=2.289009e-02	genotype_quality=1047.0	ks_quality_p_value=0.0263679	log10_base_likelihood=-11.5322	log10_qual_likelihood_position_model=5.36792	log10_strand_likelihood_position_model=1.78127	new_cov=0/6	polymorphism_quality=6.1	quality=6.1	quality_position_model=3.05392e-06	ref_cov=128/127	reject=POLYMORPHISM_STRAND	tot_cov=128/133
RA	2441	.	NC_007779	3326032	0	G	A	bias_e_value=1747840	bias_p_value=0.376177	fisher_strand_p_value=1	frequency=4.067612e-02	genotype_quality=914.4	ks_quality_p_value=0.120824	log10_base_likelihood=-23.1681	log10_qual_likelihood_position_model=4.37087	log10_strand_likelihood_position_model=0.600804	new_cov=5/5	polymorphism_quality=17.9	quality=17.9	quality_position_model=2.38036e-20	ref_cov=115/120	tot_cov=120/126
RA	2442	.	NC_007779	3326035	0	T	C	bias_e_value=4628150	bias_p_value=0.996086	fisher_strand_p_value=1	frequency=4.123783e-02	genotype_quality=882.7	ks_quality_p_value=0.912841	log10_base_likelihood=-23.0947	log10_qual_likelihood_position_model=5.86787	log10_strand_likelihood_position_model=0.602211	new_cov=5/5	polymorphism_quality=17.8	quality=17.8	quality_position_model=9.28122e-19	ref_cov=112/120	tot_cov=117/125
RA	2443	.	NC_007779	3326038	0	A	G	bias_e_value=4260930	bias_p_value=0.917052	fisher_strand_p_value=1	frequency=4.110241e-02	genotype_quality=869.6	ks_quality_p_value=0.621404	log10_base_likelihood=-24.3059	log10_qual_likelihood_position_model=3.89178	log10_strand_likelihood_position_model=0.601658	new_cov=5/5	polymorphism_quality=19.1	quality=19.1	quality_position_model=5.52762e-22	ref_cov=113/120	tot_cov=118/125
RA	2444	.	NC_007779	3326044	0	A	G	bias_e_value=3995.38	bias_p_value=0.0008599	fisher_strand_p_value=1	frequency=1.056046e-01	genotype_quality=832.8	ks_quality_p_value=8.26783e-05	log10_base_likelihood=-78.1398	log10_qual_likelihood_position_model=18.4402	log10_strand_likelihood_position_model=0.801778	new_cov=13/15	polymorphism_quality=73.1	quality=73.1	quality_position_model=2.65222e-61	ref_cov=108/129	reject=KS_QUALITY_P_VALUE	tot_cov=121/144
RA	2445	.	NC_007779	3326050	0	G	A	bias_e_value=94175.6	bias_p_value=0.0202688	fisher_strand_p_value=0.705019	frequency=1.249156e-01	genotype_quality=804.1	ks_quality_p_value=0.0042165	log10_base_likelihood=-83.8393	log10_qual_likelihood_position_model=12.8669	log10_strand_likelihood_position_model=0.877626	new_cov=13/19	polymorphism_quality=78.9	quality=78.9	quality_position_model=1.54568e-72	ref_cov=102/122	tot_cov=115/141
RA	2446	.	NC_007779	3326059	0	T	.	bias_e_value=1384760	bias_p_value=0.298033	fisher_strand_p_value=0.358956	frequency=1.157780e-01	genotype_quality=959.2	ks_quality_p_value=0.240766	log10_base_likelihood=-118.288	log10_qual_likelihood_position_model=10.5733	log10_strand_likelihood_position_model=1.03307	new_cov=13/20	polymorphism_quality=113.4	quality=113.4	quality_position_model=3.24775e-109	ref_cov=122/130	tot_cov=135/150
RA	2447	.	NC_007779	3326062	0	C	T	bias_e_value=3094130	bias_p_value=0.66593	fisher_strand_p_value=0.357422	frequency=1.175041e-01	genotype_quality=884.5	ks_quality_p_value=0.850415	log10_base_likelihood=-86.464	log10_qual_likelihood_position_model=11.1442	log10_strand_likelihood_position_model=1.03992	new_cov=13/20	polymorphism_quality=81.5	quality=81.5	quality_position_model=9.80765e-77	ref_cov=120/127	tot_cov=133/147
RA	2448	.	NC_007779	3326064	0	C	T	bias_e_value=3117430	bias_p_value=0.670944	fisher_strand_p_value=0.357946	frequency=1.136923e-01	genotype_quality=930.2	ks_quality_p_value=0.861003	log10_base_likelihood=-85.0531	log10_qual_likelihood_position_model=9.90465	log10_strand_likelihood_position_model=1.04446	new_cov=13/20	polymorphism_quality=80.1	quality=80.1	quality_position_model=1.47205e-76	ref_cov=125/132	tot_cov=138/152
RA	2449	.	NC_007779	3326067	1	.	C	bias_e_value=2918300	bias_p_value=0.628086	fisher_strand_p_value=0.360364	frequency=1.178579e-01	genotype_quality=1030.9	ks_quality_p_value=0.758968	log10_base_likelihood=-168.561	log10_qual_likelihood_position_model=8.82009	log10_strand_likelihood_position_model=1.02153	new_cov=13/20	polymorphism_quality=163.7	quality=163.7	quality_position_model=2.4424e-161	ref_cov=119/128	tot_cov=132/148
RA	2450	.	NC_007779	3326071	0	C	G	bias_e_value=3238690	bias_p_value=0.697042	fisher_strand_p_value=0.458717	frequency=1.165862e-01	genotype_quality=992.0	ks_quality_p_value=0.721728	log10_base_likelihood=-106.227	log10_qual_likelihood_position_model=9.19801	log10_strand_likelihood_position_model=0.997235	new_cov=13/20	polymorphism_quality=101.3	quality=101.3	quality_position_model=1.52812e-98	ref_cov=119/131	tot_cov=132/151
RA	2451	.	NC_007779	3326077	0	T	A	bias_e_value=2463360	bias_p_value=0.530173	fisher_strand_p_value=0.356894	frequency=1.141405e-01	genotype_quality=1002.6	ks_quality_p_value=0.574931	log10_base_likelihood=-100.034	log10_qual_likelihood_position_model=11.8963	log10_strand_likelihood_position_model=1.05326	new_cov=13/20	polymorphism_quality=95.1	quality=95.1	quality_position_model=1.42106e-89	ref_cov=125/131	tot_cov=138/151
RA	2452	.	NC_007779	3326079	0	C	T	bias_e_value=2882750	bias_p_value=0.620437	fisher_strand_p_value=0.359104	frequency=1.140938e-01	genotype_quality=942.7	ks_quality_p_value=0.745335	log10_base_likelihood=-85.1647	log10_qual_likelihood_position_model=10.0384	log10_strand_likelihood_position_model=1.03496	new_cov=13/20	polymorphism_quality=80.2	quality=80.2	quality_position_model=1.51571e-76	ref_cov=124/132	tot_cov=137/152
RA	2453	.	NC_007779	3326080	0	G	A	bias_e_value=3038270	bias_p_value=0.653908	fisher_strand_p_value=0.357734	frequency=1.152730e-01	genotype_quality=933.0	ks_quality_p_value=0.82184	log10_base_likelihood=-86.3987	log10_qual_likelihood_position_model=9.16358	log10_strand_likelihood_position_model=1.04268	new_cov=13/20	polymorphism_quality=81.4	quality=81.4	quality_position_model=1.18434e-78	ref_cov=123/130	tot_cov=136/150
RA	2454	.	NC_007779	3326085	0	T	A	bias_e_value=2458070	bias_p_value=0.529035	fisher_strand_p_value=0.269418	frequency=1.149554e-01	genotype_quality=991.7	ks_quality_p_value=0.75894	log10_base_likelihood=-104.403	log10_qual_likelihood_position_model=8.1846	log10_strand_likelihood_position_model=1.13379	new_cov=13/20	polymorphism_quality=99.5	quality=99.5	quality_position_model=1.35973e-97	ref_cov=128/126	tot_cov=141/146
RA	2455	.	NC_007779	3326092	0	A	G	bias_e_value=496745	bias_p_value=0.106911	fisher_strand_p_value=0.270523	frequency=1.153097e-01	genotype_quality=862.7	ks_quality_p_value=0.082239	log10_base_likelihood=-93.3492	log10_qual_likelihood_position_model=10.8241	log10_strand_likelihood_position_model=1.12275	new_cov=13/20	polymorphism_quality=88.4	quality=88.4	quality_position_model=7.06771e-84	ref_cov=127/126	tot_cov=140/146
RA	2456	.	NC_007779	3326098	0	G	A	bias_e_value=2450080	bias_p_value=0.527314	fisher_strand_p_value=0.273439	frequency=1.159229e-01	genotype_quality=923.2	ks_quality_p_value=0.74382	log10_base_likelihood=-85.8709	log10_qual_likelihood_position_model=10.2848	log10_strand_likelihood_position_model=1.10103	new_cov=13/20	polymorphism_quality=80.9	quality=80.9	quality_position_model=6.10622e-77	ref_cov=125/126	tot_cov=138/146
RA	2457	.	NC_007779	3326101	0	T	G	bias_e_value=1141700	bias_p_value=0.24572	fisher_strand_p_value=0.266855	frequency=1.182675e-01	genotype_quality=855.0	ks_quality_p_value=0.247775	log10_base_likelihood=-119.317	log10_qual_likelihood_position_model=8.93684	log10_strand_likelihood_position_model=1.15551	new_cov=13/20	polymorphism_quality=114.4	quality=114.4	quality_position_model=9.19261e-112	ref_cov=125/121	tot_cov=138/141
RA	2458	.	NC_007779	3326107	0	C	G	bias_e_value=736129	bias_p_value=0.158432	fisher_strand_p_value=0.194745	frequency=1.220956e-01	genotype_quality=923.1	ks_quality_p_value=0.189135	log10_base_likelihood=-105.436	log10_qual_likelihood_position_model=9.95628	log10_strand_likelihood_position_model=1.24507	new_cov=13/20	polymorphism_quality=100.5	quality=100.5	quality_position_model=9.6684e-97	ref_cov=124/113	tot_cov=138/133
RA	2459	.	NC_007779	3326125	0	T	G	bias_e_value=734007	bias_p_value=0.157976	fisher_strand_p_value=0.155223	frequency=9.708834e-02	genotype_quality=903.0	ks_quality_p_value=0.236401	log10_base_likelihood=-94.6446	log10_qual_likelihood_position_model=9.8474	log10_strand_likelihood_position_model=1.33664	new_cov=10/17	polymorphism_quality=89.7	quality=89.7	quality_position_model=6.10484e-86	ref_cov=134/118	tot_cov=144/136
RA	2460	.	NC_007779	3326134	0	A	C	bias_e_value=784585	bias_p_value=0.168861	fisher_strand_p_value=0.0486968	frequency=4.841805e-02	genotype_quality=984.1	ks_quality_p_value=0.822087	log10_base_likelihood=-40.502	log10_qual_likelihood_position_model=7.98956	log10_strand_likelihood_position_model=1.536	new_cov=3/10	polymorphism_quality=35.4	quality=35.4	quality_position_model=3.04197e-33	ref_cov=133/122	tot_cov=136/132
RA	2461	.	NC_007779	3326140	0	G	C	bias_e_value=33982.5	bias_p_value=0.00731384	fisher_strand_p_value=0.0208697	frequency=1.921558e-02	genotype_quality=1065.9	ks_quality_p_value=0.0438228	log10_base_likelihood=-12.8529	log10_qual_likelihood_position_model=4.66997	log10_strand_likelihood_position_model=1.68048	new_cov=0/5	polymorphism_quality=7.5	quality=7.5	quality_position_model=1.93046e-08	ref_cov=139/116	reject=POLYMORPHISM_STRAND	tot_cov=139/121
RA	2462	.	NC_007779	3329844	0	C	A	bias_e_value=85162.4	bias_p_value=0.018329	fisher_strand_p_value=0.00270826	frequency=2.511883e-02	genotype_quality=677.7	ks_quality_p_value=0.975748	log10_base_likelihood=-6.75776	log10_qual_likelihood_position_model=8.2196	log10_strand_likelihood_position_model=2.56731	new_cov=0/6	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=125/71	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=125/77
RA	2463	.	NC_007779	3333429	1	.	A	bias_e_value=701660	bias_p_value=0.151014	fisher_strand_p_value=1	frequency=8.264542e-03	genotype_quality=1184.7	ks_quality_p_value=0.0346068	log10_base_likelihood=-7.91127	log10_qual_likelihood_position_model=2.14258	log10_strand_likelihood_position_model=0.299974	new_cov=1/1	polymorphism_quality=2.4	quality=2.4	quality_position_model=2.26281e-07	ref_cov=115/125	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=116/126
RA	2464	.	NC_007779	3333612	0	T	G	bias_e_value=0.000552457	bias_p_value=1.18902e-10	fisher_strand_p_value=4.44502e-12	frequency=7.143831e-02	genotype_quality=536.1	ks_quality_p_value=0.985091	log10_base_likelihood=-22.7442	log10_qual_likelihood_position_model=16.0518	log10_strand_likelihood_position_model=11.3521	new_cov=12/0	polymorphism_quality=17.5	quality=17.5	quality_position_model=Inf	ref_cov=12/142	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=24/142
RA	2465	.	NC_007779	3362666	1	.	A	bias_e_value=4646280	bias_p_value=0.999988	fisher_strand_p_value=1	frequency=8.691788e-03	genotype_quality=1118.5	ks_quality_p_value=0.99513	log10_base_likelihood=-6.46045	log10_qual_likelihood_position_model=3.34135	log10_strand_likelihood_position_model=0.300321	new_cov=1/1	polymorphism_quality=0.9	quality=0.9	quality_position_model=0.000136684	ref_cov=120/108	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=121/109
RA	2466	.	NC_007779	3387541	0	G	A	bias_e_value=17.0091	bias_p_value=3.66075e-06	fisher_strand_p_value=2.24454e-07	frequency=7.029676e-02	genotype_quality=663.5	ks_quality_p_value=1	log10_base_likelihood=-7.01016	log10_qual_likelihood_position_model=16.3397	log10_strand_likelihood_position_model=6.64887	new_cov=0/18	polymorphism_quality=1.5	quality=1.5	quality_position_model=Inf	ref_cov=113/75	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=113/93
RA	2467	.	NC_007779	3389914	0	A	C	bias_e_value=1.33742e-08	bias_p_value=2.87844e-15	fisher_strand_p_value=7.55054e-17	frequency=1.080985e-01	genotype_quality=553.5	ks_quality_p_value=1	log10_base_likelihood=-10.7037	log10_qual_likelihood_position_model=28.0238	log10_strand_likelihood_position_model=16.122	new_cov=0/45	polymorphism_quality=5.3	quality=5.3	quality_position_model=Inf	ref_cov=111/65	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=111/113
RA	2468	.	NC_007779	3392267	0	C	A	bias_e_value=3.54263	bias_p_value=7.62458e-07	fisher_strand_p_value=4.24159e-08	frequency=4.728842e-02	genotype_quality=859.7	ks_quality_p_value=1	log10_base_likelihood=-8.45152	log10_qual_likelihood_position_model=14.6762	log10_strand_likelihood_position_model=7.37247	new_cov=18/0	polymorphism_quality=3.0	quality=3.0	quality_position_model=Inf	ref_cov=87/151	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=106/151
RA	2469	.	NC_007779	3397405	0	A	C	bias_e_value=4.68269e-11	bias_p_value=1.00782e-17	fisher_strand_p_value=2.29476e-19	frequency=1.449790e-01	genotype_quality=430.6	ks_quality_p_value=1	log10_base_likelihood=-13.9452	log10_qual_likelihood_position_model=34.723	log10_strand_likelihood_position_model=18.6393	new_cov=0/39	polymorphism_quality=8.6	quality=8.6	quality_position_model=Inf	ref_cov=103/33	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=103/72
RA	2470	.	NC_007779	3397813	0	C	G	frequency=1	genotype_quality=975.7	new_cov=105/128	quality=975.7	ref_cov=0/0	tot_cov=105/128
RA	2471	.	NC_007779	3404070	0	T	G	bias_e_value=1.16289e-10	bias_p_value=2.50282e-17	fisher_strand_p_value=5.82221e-19	frequency=1.636457e-01	genotype_quality=456.0	ks_quality_p_value=1	log10_base_likelihood=-29.6391	log10_qual_likelihood_position_model=31.9931	log10_strand_likelihood_position_model=18.2349	new_cov=41/0	polymorphism_quality=24.4	quality=24.4	quality_position_model=Inf	ref_cov=40/106	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=81/106
RA	2472	.	NC_007779	3404073	0	T	G	bias_e_value=0.00108321	bias_p_value=2.33131e-10	fisher_strand_p_value=8.81242e-12	frequency=1.035886e-01	genotype_quality=507.0	ks_quality_p_value=1	log10_base_likelihood=-18.8535	log10_qual_likelihood_position_model=25.2205	log10_strand_likelihood_position_model=11.0549	new_cov=27/0	polymorphism_quality=13.6	quality=13.6	quality_position_model=Inf	ref_cov=53/104	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=80/104
RA	2473	.	NC_007779	3421203	0	T	C	bias_e_value=7.6531e-06	bias_p_value=1.64713e-12	fisher_strand_p_value=5.21496e-14	frequency=1.090598e-01	genotype_quality=588.9	ks_quality_p_value=1	log10_base_likelihood=-19.5809	log10_qual_likelihood_position_model=25.8513	log10_strand_likelihood_position_model=13.2827	new_cov=0/23	polymorphism_quality=14.3	quality=14.3	quality_position_model=Inf	ref_cov=129/35	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=129/58
RA	2474	.	NC_007779	3421217	0	C	G	bias_e_value=0.0302332	bias_p_value=6.5069e-09	fisher_strand_p_value=2.96776e-10	frequency=8.418036e-02	genotype_quality=691.9	ks_quality_p_value=0.953886	log10_base_likelihood=-19.4259	log10_qual_likelihood_position_model=20.7602	log10_strand_likelihood_position_model=9.52757	new_cov=0/20	polymorphism_quality=14.1	quality=14.1	quality_position_model=Inf	ref_cov=136/58	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=136/78
RA	2475	.	NC_007779	3423145	0	A	C	bias_e_value=1486260	bias_p_value=0.319877	fisher_strand_p_value=0.160506	frequency=2.236557e-02	genotype_quality=398.5	ks_quality_p_value=0.595213	log10_base_likelihood=-5.88518	log10_qual_likelihood_position_model=3.88458	log10_strand_likelihood_position_model=0.838948	new_cov=2/1	polymorphism_quality=0.3	quality=0.3	quality_position_model=0.00909609	ref_cov=32/98	reject=EVALUE,POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=34/99
RA	2476	.	NC_007779	3431073	0	C	A	bias_e_value=1111.78	bias_p_value=0.000239282	fisher_strand_p_value=2.02669e-05	frequency=7.596397e-02	genotype_quality=473.2	ks_quality_p_value=1	log10_base_likelihood=-7.44995	log10_qual_likelihood_position_model=11.8659	log10_strand_likelihood_position_model=4.69321	new_cov=0/12	polymorphism_quality=1.9	quality=1.9	quality_position_model=Inf	ref_cov=75/45	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=75/57
RA	2477	.	NC_007779	3440270	0	C	A	bias_e_value=10.0647	bias_p_value=2.16616e-06	fisher_strand_p_value=1.28419e-07	frequency=7.242727e-02	genotype_quality=775.6	ks_quality_p_value=1	log10_base_likelihood=-11.9618	log10_qual_likelihood_position_model=18.7524	log10_strand_likelihood_position_model=6.93537	new_cov=23/0	polymorphism_quality=6.6	quality=6.6	quality_position_model=Inf	ref_cov=107/119	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=133/119
RA	2478	.	NC_007779	3440600	0	A	C	bias_e_value=6.08901e-07	bias_p_value=1.3105e-13	fisher_strand_p_value=3.8324e-15	frequency=8.222485e-02	genotype_quality=514.2	ks_quality_p_value=1	log10_base_likelihood=-6.5609	log10_qual_likelihood_position_model=26.2	log10_strand_likelihood_position_model=14.4165	new_cov=0/32	polymorphism_quality=1.0	quality=1.0	quality_position_model=Inf	ref_cov=114/47	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=114/79
RA	2479	.	NC_007779	3441343	0	A	G	bias_e_value=1134500	bias_p_value=0.244172	fisher_strand_p_value=0.831793	frequency=8.946562e-02	genotype_quality=869.8	ks_quality_p_value=0.0788065	log10_base_likelihood=-64.8038	log10_qual_likelihood_position_model=12.808	log10_strand_likelihood_position_model=0.792638	new_cov=12/12	polymorphism_quality=59.8	quality=59.8	quality_position_model=1.40752e-53	ref_cov=130/114	tot_cov=142/126
RA	2480	.	NC_007779	3441347	0	C	A	bias_e_value=3641400	bias_p_value=0.783714	fisher_strand_p_value=0.544664	frequency=9.569693e-02	genotype_quality=1058.9	ks_quality_p_value=0.769772	log10_base_likelihood=-74.0586	log10_qual_likelihood_position_model=9.72824	log10_strand_likelihood_position_model=0.919403	new_cov=12/15	polymorphism_quality=69.1	quality=69.1	quality_position_model=7.84491e-66	ref_cov=133/122	tot_cov=145/137
RA	2481	.	NC_007779	3441352	0	A	G	bias_e_value=738982	bias_p_value=0.159046	fisher_strand_p_value=0.207	frequency=1.223383e-01	genotype_quality=814.6	ks_quality_p_value=0.178837	log10_base_likelihood=-94.8676	log10_qual_likelihood_position_model=13.1675	log10_strand_likelihood_position_model=1.24781	new_cov=14/21	polymorphism_quality=89.9	quality=89.9	quality_position_model=6.33726e-83	ref_cov=131/119	tot_cov=145/140
RA	2482	.	NC_007779	3441356	0	T	G	bias_e_value=733579	bias_p_value=0.157883	fisher_strand_p_value=0.206461	frequency=1.210704e-01	genotype_quality=861.5	ks_quality_p_value=0.177597	log10_base_likelihood=-119.957	log10_qual_likelihood_position_model=15.7745	log10_strand_likelihood_position_model=1.27288	new_cov=14/21	polymorphism_quality=115.1	quality=115.1	quality_position_model=1.9557e-105	ref_cov=134/120	tot_cov=149/141
RA	2483	.	NC_007779	3441358	0	C	G	bias_e_value=1602890	bias_p_value=0.34498	fisher_strand_p_value=0.20796	frequency=1.208730e-01	genotype_quality=968.3	ks_quality_p_value=0.512035	log10_base_likelihood=-95.0842	log10_qual_likelihood_position_model=17.8544	log10_strand_likelihood_position_model=1.23447	new_cov=14/21	polymorphism_quality=90.1	quality=90.1	quality_position_model=1.86706e-78	ref_cov=131/120	tot_cov=145/141
RA	2484	.	NC_007779	3441361	0	G	C	bias_e_value=477471	bias_p_value=0.102763	fisher_strand_p_value=0.149265	frequency=1.340122e-01	genotype_quality=861.0	ks_quality_p_value=0.141792	log10_base_likelihood=-110.036	log10_qual_likelihood_position_model=12.5583	log10_strand_likelihood_position_model=1.31731	new_cov=14/21	polymorphism_quality=105.1	quality=105.1	quality_position_model=1.13558e-98	ref_cov=121/105	reject=SURROUNDING_HOMOPOLYMER	tot_cov=135/126
RA	2485	.	NC_007779	3441364	0	C	T	bias_e_value=1923320	bias_p_value=0.413944	fisher_strand_p_value=0.147747	frequency=1.354003e-01	genotype_quality=781.8	ks_quality_p_value=0.943053	log10_base_likelihood=-92.573	log10_qual_likelihood_position_model=8.78994	log10_strand_likelihood_position_model=1.33396	new_cov=14/21	polymorphism_quality=87.6	quality=87.6	quality_position_model=6.30632e-85	ref_cov=121/104	tot_cov=135/126
RA	2486	.	NC_007779	3441370	0	A	C	bias_e_value=1258520	bias_p_value=0.270862	fisher_strand_p_value=0.0931819	frequency=1.414814e-01	genotype_quality=809.0	ks_quality_p_value=0.811485	log10_base_likelihood=-139.181	log10_qual_likelihood_position_model=14.1683	log10_strand_likelihood_position_model=1.51804	new_cov=16/25	polymorphism_quality=134.3	quality=134.3	quality_position_model=4.64314e-126	ref_cov=133/115	tot_cov=149/140
RA	2487	.	NC_007779	3441376	0	T	C	bias_e_value=346935	bias_p_value=0.0746687	fisher_strand_p_value=0.0644575	frequency=1.412997e-01	genotype_quality=805.5	ks_quality_p_value=0.220499	log10_base_likelihood=-116.877	log10_qual_likelihood_position_model=15.786	log10_strand_likelihood_position_model=1.64868	new_cov=16/25	polymorphism_quality=112.0	quality=112.0	quality_position_model=5.83491e-102	ref_cov=137/112	tot_cov=153/137
RA	2488	.	NC_007779	3441379	0	G	C	bias_e_value=721627	bias_p_value=0.155311	fisher_strand_p_value=0.0640265	frequency=1.398635e-01	genotype_quality=952.9	ks_quality_p_value=0.56057	log10_base_likelihood=-132.247	log10_qual_likelihood_position_model=13.4105	log10_strand_likelihood_position_model=1.66405	new_cov=16/25	polymorphism_quality=127.4	quality=127.4	quality_position_model=1.0011e-119	ref_cov=139/113	tot_cov=155/138
RA	2489	.	NC_007779	3441380	0	G	A	bias_e_value=1093290	bias_p_value=0.235301	fisher_strand_p_value=0.064699	frequency=1.402693e-01	genotype_quality=873.4	ks_quality_p_value=0.963306	log10_base_likelihood=-109.771	log10_qual_likelihood_position_model=13.9457	log10_strand_likelihood_position_model=1.6459	new_cov=16/25	polymorphism_quality=104.9	quality=104.9	quality_position_model=1.0983e-96	ref_cov=138/113	tot_cov=154/138
RA	2490	.	NC_007779	3441382	0	G	C	bias_e_value=19007.2	bias_p_value=0.00409079	fisher_strand_p_value=0.134721	frequency=1.453176e-01	genotype_quality=867.4	ks_quality_p_value=0.00350738	log10_base_likelihood=-135.836	log10_qual_likelihood_position_model=16.0049	log10_strand_likelihood_position_model=1.39584	new_cov=17/25	polymorphism_quality=131.0	quality=131.0	quality_position_model=5.43642e-121	ref_cov=132/115	tot_cov=149/140
RA	2491	.	NC_007779	3441388	0	T	C	bias_e_value=221287	bias_p_value=0.0476262	fisher_strand_p_value=0.0545415	frequency=1.678386e-01	genotype_quality=715.6	ks_quality_p_value=0.150484	log10_base_likelihood=-139.691	log10_qual_likelihood_position_model=12.1956	log10_strand_likelihood_position_model=1.77988	new_cov=17/30	polymorphism_quality=134.8	quality=134.8	quality_position_model=2.76817e-128	ref_cov=122/111	tot_cov=139/141
RA	2492	.	NC_007779	3441391	0	C	G	bias_e_value=749895	bias_p_value=0.161395	fisher_strand_p_value=0.0550532	frequency=1.671648e-01	genotype_quality=830.5	ks_quality_p_value=0.685406	log10_base_likelihood=-153.361	log10_qual_likelihood_position_model=11.6604	log10_strand_likelihood_position_model=1.7563	new_cov=17/30	polymorphism_quality=148.5	quality=148.5	quality_position_model=1.54951e-142	ref_cov=122/112	tot_cov=139/142
RA	2493	.	NC_007779	3441401	0	C	A	bias_e_value=231892	bias_p_value=0.0499086	fisher_strand_p_value=0.0267606	frequency=1.621385e-01	genotype_quality=963.9	ks_quality_p_value=0.32457	log10_base_likelihood=-148.84	log10_qual_likelihood_position_model=11.4088	log10_strand_likelihood_position_model=2.05437	new_cov=17/31	polymorphism_quality=144.0	quality=144.0	quality_position_model=5.81791e-138	ref_cov=133/115	tot_cov=150/146
RA	2494	.	NC_007779	3441402	0	G	A	bias_e_value=148502	bias_p_value=0.0319612	fisher_strand_p_value=0.026441	frequency=1.655045e-01	genotype_quality=785.6	ks_quality_p_value=0.192458	log10_base_likelihood=-136.932	log10_qual_likelihood_position_model=12.4712	log10_strand_likelihood_position_model=2.06026	new_cov=17/31	polymorphism_quality=132.1	quality=132.1	quality_position_model=5.79317e-125	ref_cov=130/112	tot_cov=147/143
RA	2495	.	NC_007779	3441403	0	C	G	bias_e_value=62761.4	bias_p_value=0.0135077	fisher_strand_p_value=0.026441	frequency=1.655393e-01	genotype_quality=864.6	ks_quality_p_value=0.0700661	log10_base_likelihood=-159.964	log10_qual_likelihood_position_model=12.6187	log10_strand_likelihood_position_model=2.06026	new_cov=17/31	polymorphism_quality=155.1	quality=155.1	quality_position_model=6.9388e-148	ref_cov=130/112	tot_cov=147/143
RA	2496	.	NC_007779	3441404	0	T	G	bias_e_value=129060	bias_p_value=0.0277767	fisher_strand_p_value=0.0395035	frequency=1.727066e-01	genotype_quality=711.3	ks_quality_p_value=0.109062	log10_base_likelihood=-181.447	log10_qual_likelihood_position_model=11.9352	log10_strand_likelihood_position_model=1.86212	new_cov=17/31	polymorphism_quality=176.6	quality=176.6	quality_position_model=2.79023e-170	ref_cov=120/110	tot_cov=137/141
RA	2497	.	NC_007779	3441406	0	T	C	bias_e_value=168442	bias_p_value=0.0362526	fisher_strand_p_value=0.0400939	frequency=1.732254e-01	genotype_quality=705.8	ks_quality_p_value=0.14749	log10_base_likelihood=-146.636	log10_qual_likelihood_position_model=12.096	log10_strand_likelihood_position_model=1.83735	new_cov=17/31	polymorphism_quality=141.8	quality=141.8	quality_position_model=2.77498e-135	ref_cov=119/110	tot_cov=136/141
RA	2498	.	NC_007779	3441431	0	T	C	bias_e_value=718743	bias_p_value=0.15469	fisher_strand_p_value=0.0660996	frequency=1.235862e-01	genotype_quality=817.9	ks_quality_p_value=0.540169	log10_base_likelihood=-98.0146	log10_qual_likelihood_position_model=6.51065	log10_strand_likelihood_position_model=1.65558	new_cov=11/23	polymorphism_quality=93.1	quality=93.1	quality_position_model=2.40953e-92	ref_cov=121/120	tot_cov=132/143
RA	2499	.	NC_007779	3441440	0	A	T	bias_e_value=969265	bias_p_value=0.208609	fisher_strand_p_value=0.0602248	frequency=7.454395e-02	genotype_quality=962.7	ks_quality_p_value=0.879602	log10_base_likelihood=-55.7667	log10_qual_likelihood_position_model=10.0335	log10_strand_likelihood_position_model=1.66901	new_cov=5/15	polymorphism_quality=50.7	quality=50.7	quality_position_model=2.0881e-46	ref_cov=122/126	tot_cov=127/141
RA	2500	.	NC_007779	3441441	0	G	C	bias_e_value=138703	bias_p_value=0.0298522	fisher_strand_p_value=0.0385913	frequency=7.428074e-02	genotype_quality=1023.1	ks_quality_p_value=0.121592	log10_base_likelihood=-57.7405	log10_qual_likelihood_position_model=9.97973	log10_strand_likelihood_position_model=1.68526	new_cov=5/15	polymorphism_quality=52.7	quality=52.7	quality_position_model=1.98991e-48	ref_cov=123/126	tot_cov=128/141
RA	2501	.	NC_007779	3441442	0	C	A	bias_e_value=12.0283	bias_p_value=2.58878e-06	fisher_strand_p_value=1.55317e-07	frequency=5.352449e-02	genotype_quality=835.0	ks_quality_p_value=0.999359	log10_base_likelihood=-7.87133	log10_qual_likelihood_position_model=18.7506	log10_strand_likelihood_position_model=6.80878	new_cov=20/0	polymorphism_quality=2.4	quality=2.4	quality_position_model=Inf	ref_cov=104/136	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=125/136
RA	2502	.	NC_007779	3441452	0	A	G	bias_e_value=27966.3	bias_p_value=0.00601901	fisher_strand_p_value=0.0621328	frequency=3.835869e-02	genotype_quality=1027.3	ks_quality_p_value=0.011786	log10_base_likelihood=-25.0816	log10_qual_likelihood_position_model=6.96949	log10_strand_likelihood_position_model=1.49387	new_cov=2/9	polymorphism_quality=19.8	quality=19.8	quality_position_model=9.4203e-19	ref_cov=136/139	tot_cov=138/148
RA	2503	.	NC_007779	3441454	0	C	T	bias_e_value=49948	bias_p_value=0.01075	fisher_strand_p_value=0.062122	frequency=3.861332e-02	genotype_quality=1072.7	ks_quality_p_value=0.0229047	log10_base_likelihood=-23.779	log10_qual_likelihood_position_model=6.10486	log10_strand_likelihood_position_model=1.49333	new_cov=2/9	polymorphism_quality=18.5	quality=18.5	quality_position_model=2.61302e-18	ref_cov=135/138	tot_cov=137/147
RA	2504	.	NC_007779	3441460	0	A	G	bias_e_value=118049	bias_p_value=0.025407	fisher_strand_p_value=0.0364488	frequency=3.061104e-02	genotype_quality=1082.0	ks_quality_p_value=0.106379	log10_base_likelihood=-20.207	log10_qual_likelihood_position_model=4.84772	log10_strand_likelihood_position_model=1.73285	new_cov=1/8	polymorphism_quality=14.9	quality=14.9	quality_position_model=1.01815e-15	ref_cov=143/141	reject=POLYMORPHISM_STRAND	tot_cov=144/149
RA	2505	.	NC_007779	3441469	0	C	T	bias_e_value=286357	bias_p_value=0.0616307	fisher_strand_p_value=0.0612229	frequency=1.822662e-02	genotype_quality=1077.6	ks_quality_p_value=0.183382	log10_base_likelihood=-9.25758	log10_qual_likelihood_position_model=3.86658	log10_strand_likelihood_position_model=1.43429	new_cov=0/5	polymorphism_quality=3.8	quality=3.8	quality_position_model=8.54098e-06	ref_cov=131/137	reject=POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=131/142
RA	2506	.	NC_007779	3441952	0	G	T	bias_e_value=554032	bias_p_value=0.119241	fisher_strand_p_value=0.125357	frequency=7.627487e-02	genotype_quality=790.4	ks_quality_p_value=0.203809	log10_base_likelihood=-44.718	log10_qual_likelihood_position_model=7.46402	log10_strand_likelihood_position_model=1.2262	new_cov=11/5	polymorphism_quality=39.6	quality=39.6	quality_position_model=2.50859e-38	ref_cov=93/101	tot_cov=104/106
RA	2507	.	NC_007779	3441958	0	T	C	bias_e_value=288860	bias_p_value=0.0621694	fisher_strand_p_value=0.195662	frequency=7.401657e-02	genotype_quality=726.7	ks_quality_p_value=0.0579945	log10_base_likelihood=-41.8826	log10_qual_likelihood_position_model=8.77768	log10_strand_likelihood_position_model=1.1235	new_cov=11/5	polymorphism_quality=36.8	quality=36.8	quality_position_model=2.96026e-34	ref_cov=100/100	tot_cov=111/105
RA	2508	.	NC_007779	3441964	0	T	C	bias_e_value=44874.6	bias_p_value=0.00965808	fisher_strand_p_value=0.19443	frequency=7.201767e-02	genotype_quality=746.9	ks_quality_p_value=0.00646933	log10_base_likelihood=-43.1458	log10_qual_likelihood_position_model=7.34354	log10_strand_likelihood_position_model=1.14861	new_cov=11/5	polymorphism_quality=38.0	quality=38.0	quality_position_model=6.05195e-37	ref_cov=102/104	reject=SURROUNDING_HOMOPOLYMER	tot_cov=113/109
RA	2509	.	NC_007779	3441967	0	G	C	bias_e_value=96733	bias_p_value=0.0208192	fisher_strand_p_value=0.19334	frequency=7.163715e-02	genotype_quality=868.1	ks_quality_p_value=0.0158662	log10_base_likelihood=-48.848	log10_qual_likelihood_position_model=6.68133	log10_strand_likelihood_position_model=1.1852	new_cov=11/5	polymorphism_quality=43.8	quality=43.8	quality_position_model=2.61856e-43	ref_cov=101/106	tot_cov=112/111
RA	2510	.	NC_007779	3441970	0	G	C	bias_e_value=235689	bias_p_value=0.0507259	fisher_strand_p_value=0.19334	frequency=7.137918e-02	genotype_quality=850.1	ks_quality_p_value=0.0458168	log10_base_likelihood=-48.0054	log10_qual_likelihood_position_model=6.67364	log10_strand_likelihood_position_model=1.19755	new_cov=11/5	polymorphism_quality=42.9	quality=42.9	quality_position_model=1.86129e-42	ref_cov=101/107	tot_cov=112/112
RA	2511	.	NC_007779	3441976	0	A	G	bias_e_value=206711	bias_p_value=0.044489	fisher_strand_p_value=0.198348	frequency=7.015133e-02	genotype_quality=763.2	ks_quality_p_value=0.0381141	log10_base_likelihood=-43.2397	log10_qual_likelihood_position_model=6.49282	log10_strand_likelihood_position_model=1.10381	new_cov=11/5	polymorphism_quality=38.1	quality=38.1	quality_position_model=6.11555e-38	ref_cov=107/105	tot_cov=118/110
RA	2512	.	NC_007779	3441977	0	A	G	bias_e_value=126937	bias_p_value=0.0273198	fisher_strand_p_value=0.198348	frequency=7.006550e-02	genotype_quality=766.1	ks_quality_p_value=0.0212989	log10_base_likelihood=-42.224	log10_qual_likelihood_position_model=7.69659	log10_strand_likelihood_position_model=1.10381	new_cov=11/5	polymorphism_quality=37.1	quality=37.1	quality_position_model=1.0464e-35	ref_cov=107/105	tot_cov=118/110
RA	2513	.	NC_007779	3441979	0	T	A	bias_e_value=121409	bias_p_value=0.0261302	fisher_strand_p_value=0.19507	frequency=6.894493e-02	genotype_quality=838.0	ks_quality_p_value=0.0205466	log10_base_likelihood=-48.2553	log10_qual_likelihood_position_model=7.39307	log10_strand_likelihood_position_model=1.14981	new_cov=11/5	polymorphism_quality=43.2	quality=43.2	quality_position_model=4.9416e-42	ref_cov=107/109	tot_cov=118/114
RA	2514	.	NC_007779	3441985	0	T	C	bias_e_value=148347	bias_p_value=0.0319277	fisher_strand_p_value=0.0453309	frequency=9.510851e-02	genotype_quality=741.0	ks_quality_p_value=0.112119	log10_base_likelihood=-57.8879	log10_qual_likelihood_position_model=9.54225	log10_strand_likelihood_position_model=1.65336	new_cov=16/6	polymorphism_quality=52.8	quality=52.8	quality_position_model=4.77744e-49	ref_cov=104/105	tot_cov=120/111
RA	2515	.	NC_007779	3441988	0	T	C	bias_e_value=542907	bias_p_value=0.116846	fisher_strand_p_value=0.0453892	frequency=9.348297e-02	genotype_quality=750.4	ks_quality_p_value=0.548551	log10_base_likelihood=-58.5412	log10_qual_likelihood_position_model=9.91162	log10_strand_likelihood_position_model=1.65502	new_cov=16/6	polymorphism_quality=53.5	quality=53.5	quality_position_model=2.48672e-49	ref_cov=106/107	tot_cov=122/113
RA	2516	.	NC_007779	3442007	0	T	A	bias_e_value=567203	bias_p_value=0.122075	fisher_strand_p_value=0.0683864	frequency=1.214991e-01	genotype_quality=772.4	ks_quality_p_value=0.384946	log10_base_likelihood=-87.1837	log10_qual_likelihood_position_model=8.66947	log10_strand_likelihood_position_model=1.62615	new_cov=19/9	polymorphism_quality=82.2	quality=82.2	quality_position_model=2.37618e-79	ref_cov=97/105	tot_cov=116/114
RA	2517	.	NC_007779	3442017	0	G	C	bias_e_value=822985	bias_p_value=0.177126	fisher_strand_p_value=0.0496022	frequency=1.244326e-01	genotype_quality=824.2	ks_quality_p_value=0.859372	log10_base_likelihood=-92.3868	log10_qual_likelihood_position_model=10.5159	log10_strand_likelihood_position_model=1.77668	new_cov=20/10	polymorphism_quality=87.4	quality=87.4	quality_position_model=1.44853e-82	ref_cov=97/114	tot_cov=117/124
RA	2518	.	NC_007779	3442018	0	G	T	bias_e_value=912311	bias_p_value=0.196351	fisher_strand_p_value=0.0731079	frequency=1.207356e-01	genotype_quality=869.0	ks_quality_p_value=0.668293	log10_base_likelihood=-84.6694	log10_qual_likelihood_position_model=10.0129	log10_strand_likelihood_position_model=1.63894	new_cov=19/10	polymorphism_quality=79.7	quality=79.7	quality_position_model=1.80937e-75	ref_cov=97/114	tot_cov=116/124
RA	2519	.	NC_007779	3442021	0	T	C	bias_e_value=662845	bias_p_value=0.14266	fisher_strand_p_value=0.0486706	frequency=1.171532e-01	genotype_quality=746.5	ks_quality_p_value=0.660558	log10_base_likelihood=-77.9525	log10_qual_likelihood_position_model=9.28151	log10_strand_likelihood_position_model=1.69231	new_cov=19/10	polymorphism_quality=73.0	quality=73.0	quality_position_model=2.06568e-69	ref_cov=99/119	tot_cov=118/129
RA	2520	.	NC_007779	3442024	0	T	C	bias_e_value=575764	bias_p_value=0.123918	fisher_strand_p_value=0.0499873	frequency=1.137271e-01	genotype_quality=731.2	ks_quality_p_value=0.536796	log10_base_likelihood=-75.1608	log10_qual_likelihood_position_model=9.21264	log10_strand_likelihood_position_model=1.66622	new_cov=19/10	polymorphism_quality=70.2	quality=70.2	quality_position_model=1.04874e-66	ref_cov=102/121	tot_cov=121/131
RA	2521	.	NC_007779	3442030	0	G	A	bias_e_value=872877	bias_p_value=0.187864	fisher_strand_p_value=0.0460729	frequency=1.238894e-01	genotype_quality=736.9	ks_quality_p_value=1	log10_base_likelihood=-71.0663	log10_qual_likelihood_position_model=11.1795	log10_strand_likelihood_position_model=1.75615	new_cov=19/10	polymorphism_quality=66.1	quality=66.1	quality_position_model=1.56194e-60	ref_cov=91/113	tot_cov=110/123
RA	2522	.	NC_007779	3442033	0	G	C	bias_e_value=857240	bias_p_value=0.184498	fisher_strand_p_value=0.0457038	frequency=1.207767e-01	genotype_quality=824.2	ks_quality_p_value=0.984241	log10_base_likelihood=-89.3901	log10_qual_likelihood_position_model=10.6025	log10_strand_likelihood_position_model=1.81112	new_cov=19/10	polymorphism_quality=84.4	quality=84.4	quality_position_model=1.93753e-79	ref_cov=93/118	tot_cov=112/128
RA	2523	.	NC_007779	3442037	1	.	C	bias_e_value=1717240	bias_p_value=0.369591	fisher_strand_p_value=0.137102	frequency=5.172443e-02	genotype_quality=1032.2	ks_quality_p_value=0.858687	log10_base_likelihood=-57.7901	log10_qual_likelihood_position_model=5.29654	log10_strand_likelihood_position_model=1.18351	new_cov=8/4	polymorphism_quality=52.7	quality=52.7	quality_position_model=1.09935e-53	ref_cov=94/126	tot_cov=102/130
RA	2524	.	NC_007779	3442040	0	T	A	bias_e_value=1841370	bias_p_value=0.396307	fisher_strand_p_value=0.139673	frequency=5.170107e-02	genotype_quality=877.8	ks_quality_p_value=0.93453	log10_base_likelihood=-33.3215	log10_qual_likelihood_position_model=4.32753	log10_strand_likelihood_position_model=1.16197	new_cov=8/4	polymorphism_quality=28.1	quality=28.1	quality_position_model=4.47207e-30	ref_cov=95/125	tot_cov=103/129
RA	2525	.	NC_007779	3442043	0	T	.	bias_e_value=250018	bias_p_value=0.0538097	fisher_strand_p_value=0.130617	frequency=5.332375e-02	genotype_quality=764.0	ks_quality_p_value=0.072852	log10_base_likelihood=-39.6379	log10_qual_likelihood_position_model=7.13548	log10_strand_likelihood_position_model=1.25951	new_cov=8/4	polymorphism_quality=34.5	quality=34.5	quality_position_model=1.64004e-33	ref_cov=86/123	reject=INDEL_HOMOPOLYMER	tot_cov=98/127
RA	2526	.	NC_007779	3442044	0	T	C	bias_e_value=273122	bias_p_value=0.0587824	fisher_strand_p_value=0.134666	frequency=5.327892e-02	genotype_quality=757.2	ks_quality_p_value=0.0786889	log10_base_likelihood=-29.2381	log10_qual_likelihood_position_model=7.1071	log10_strand_likelihood_position_model=1.20503	new_cov=8/4	polymorphism_quality=24.0	quality=24.0	quality_position_model=4.14367e-23	ref_cov=90/123	tot_cov=98/127
RA	2527	.	NC_007779	3442048	0	C	T	bias_e_value=1246510	bias_p_value=0.268279	fisher_strand_p_value=0.0770937	frequency=5.321741e-02	genotype_quality=784.7	ks_quality_p_value=0.967883	log10_base_likelihood=-20.5143	log10_qual_likelihood_position_model=11.5203	log10_strand_likelihood_position_model=1.33085	new_cov=8/4	polymorphism_quality=15.2	quality=15.2	quality_position_model=1.23376e-09	ref_cov=84/127	tot_cov=92/131
RA	2528	.	NC_007779	3442049	0	T	A	bias_e_value=1239130	bias_p_value=0.26669	fisher_strand_p_value=0.0741578	frequency=5.313635e-02	genotype_quality=800.8	ks_quality_p_value=0.997962	log10_base_likelihood=-24.3446	log10_qual_likelihood_position_model=11.9407	log10_strand_likelihood_position_model=1.357	new_cov=8/4	polymorphism_quality=19.1	quality=19.1	quality_position_model=4.28031e-13	ref_cov=83/128	tot_cov=92/132
RA	2529	.	NC_007779	3442050	0	G	C	bias_e_value=581605	bias_p_value=0.125175	fisher_strand_p_value=0.0758741	frequency=5.604219e-02	genotype_quality=803.6	ks_quality_p_value=0.358238	log10_base_likelihood=-33.5928	log10_qual_likelihood_position_model=7.00829	log10_strand_likelihood_position_model=1.33977	new_cov=8/4	polymorphism_quality=28.4	quality=28.4	quality_position_model=1.81392e-27	ref_cov=80/122	tot_cov=88/126
RA	2530	.	NC_007779	3442054	0	G	C	bias_e_value=758716	bias_p_value=0.163294	fisher_strand_p_value=0.0657799	frequency=5.821896e-02	genotype_quality=780.2	ks_quality_p_value=0.582465	log10_base_likelihood=-33.944	log10_qual_likelihood_position_model=7.56696	log10_strand_likelihood_position_model=1.4505	new_cov=8/4	polymorphism_quality=28.8	quality=28.8	quality_position_model=3.79781e-27	ref_cov=73/121	tot_cov=81/125
RA	2531	.	NC_007779	3442063	0	T	C	bias_e_value=1452990	bias_p_value=0.312718	fisher_strand_p_value=0.129287	frequency=5.397081e-02	genotype_quality=756.6	ks_quality_p_value=0.715518	log10_base_likelihood=-28.2087	log10_qual_likelihood_position_model=7.51427	log10_strand_likelihood_position_model=1.29481	new_cov=8/4	polymorphism_quality=23.0	quality=23.0	quality_position_model=1.44494e-21	ref_cov=85/125	tot_cov=93/129
RA	2532	.	NC_007779	3442069	0	A	C	bias_e_value=711857	bias_p_value=0.153208	fisher_strand_p_value=0.0832985	frequency=5.727148e-02	genotype_quality=827.8	ks_quality_p_value=0.42331	log10_base_likelihood=-43.1207	log10_qual_likelihood_position_model=7.28538	log10_strand_likelihood_position_model=1.38845	new_cov=9/4	polymorphism_quality=38.0	quality=38.0	quality_position_model=9.77147e-37	ref_cov=91/123	tot_cov=100/127
RA	2533	.	NC_007779	3442075	0	A	G	bias_e_value=3917630	bias_p_value=0.843166	fisher_strand_p_value=0.50989	frequency=4.082394e-02	genotype_quality=793.5	ks_quality_p_value=0.97103	log10_base_likelihood=-19.8427	log10_qual_likelihood_position_model=5.03543	log10_strand_likelihood_position_model=0.687669	new_cov=5/4	polymorphism_quality=14.6	quality=14.6	quality_position_model=3.21477e-16	ref_cov=91/119	tot_cov=96/123
RA	2534	.	NC_007779	3442078	0	A	G	bias_e_value=4401880	bias_p_value=0.947387	fisher_strand_p_value=0.733985	frequency=3.875637e-02	genotype_quality=770.1	ks_quality_p_value=0.945079	log10_base_likelihood=-18.3832	log10_qual_likelihood_position_model=5.02944	log10_strand_likelihood_position_model=0.579024	new_cov=4/4	polymorphism_quality=13.1	quality=13.1	quality_position_model=7.46625e-15	ref_cov=87/111	tot_cov=91/115
RA	2535	.	NC_007779	3442084	0	T	C	bias_e_value=4642290	bias_p_value=0.999131	fisher_strand_p_value=1	frequency=2.686787e-02	genotype_quality=822.8	ks_quality_p_value=0.95859	log10_base_likelihood=-11.8391	log10_qual_likelihood_position_model=5.32526	log10_strand_likelihood_position_model=0.503097	new_cov=3/3	polymorphism_quality=6.4	quality=6.4	quality_position_model=6.21472e-08	ref_cov=102/114	tot_cov=105/117
RA	2536	.	NC_007779	3442162	0	G	A	bias_e_value=599127	bias_p_value=0.128946	fisher_strand_p_value=0.395417	frequency=1.823616e-02	genotype_quality=1045.7	ks_quality_p_value=0.0713996	log10_base_likelihood=-7.63218	log10_qual_likelihood_position_model=5.45075	log10_strand_likelihood_position_model=0.64316	new_cov=4/1	polymorphism_quality=2.1	quality=2.1	quality_position_model=0.00339097	ref_cov=145/111	reject=POLYMORPHISM_STRAND	tot_cov=149/112
RA	2537	.	NC_007779	3442165	0	A	G	bias_e_value=1749090	bias_p_value=0.376444	fisher_strand_p_value=0.396502	frequency=1.943302e-02	genotype_quality=977.3	ks_quality_p_value=0.305046	log10_base_likelihood=-9.20243	log10_qual_likelihood_position_model=6.1412	log10_strand_likelihood_position_model=0.639753	new_cov=4/1	polymorphism_quality=3.7	quality=3.7	quality_position_model=0.000364842	ref_cov=142/108	reject=POLYMORPHISM_STRAND	tot_cov=146/109
RA	2538	.	NC_007779	3442170	0	A	T	bias_e_value=364612	bias_p_value=0.0784732	fisher_strand_p_value=0.398989	frequency=1.933861e-02	genotype_quality=992.5	ks_quality_p_value=0.0378803	log10_base_likelihood=-10.5591	log10_qual_likelihood_position_model=5.29816	log10_strand_likelihood_position_model=0.632971	new_cov=4/1	polymorphism_quality=5.1	quality=5.1	quality_position_model=1.69444e-06	ref_cov=144/108	reject=POLYMORPHISM_STRAND	tot_cov=148/109
RA	2539	.	NC_007779	3442171	0	T	G	bias_e_value=910157	bias_p_value=0.195887	fisher_strand_p_value=0.407022	frequency=1.908779e-02	genotype_quality=985.1	ks_quality_p_value=0.119659	log10_base_likelihood=-12.4109	log10_qual_likelihood_position_model=5.78768	log10_strand_likelihood_position_model=0.613002	new_cov=4/1	polymorphism_quality=7.0	quality=7.0	quality_position_model=6.22244e-08	ref_cov=146/105	reject=POLYMORPHISM_STRAND	tot_cov=150/107
RA	2540	.	NC_007779	3442175	0	G	C	bias_e_value=2440480	bias_p_value=0.525248	fisher_strand_p_value=0.399821	frequency=1.723194e-02	genotype_quality=995.6	ks_quality_p_value=0.505464	log10_base_likelihood=-8.55647	log10_qual_likelihood_position_model=7.21428	log10_strand_likelihood_position_model=0.630259	new_cov=4/1	polymorphism_quality=3.1	quality=3.1	quality_position_model=0.0316058	ref_cov=138/103	reject=POLYMORPHISM_STRAND	tot_cov=142/104
RA	2541	.	NC_007779	3442180	0	G	T	bias_e_value=2699630	bias_p_value=0.581023	fisher_strand_p_value=0.239011	frequency=2.446461e-02	genotype_quality=974.3	ks_quality_p_value=0.999792	log10_base_likelihood=-12.2991	log10_qual_likelihood_position_model=5.32808	log10_strand_likelihood_position_model=0.819707	new_cov=5/1	polymorphism_quality=6.9	quality=6.9	quality_position_model=4.44774e-08	ref_cov=133/104	reject=POLYMORPHISM_STRAND	tot_cov=138/105
RA	2542	.	NC_007779	3442183	0	A	G	bias_e_value=3478530	bias_p_value=0.748662	fisher_strand_p_value=0.385184	frequency=2.017593e-02	genotype_quality=944.4	ks_quality_p_value=0.989175	log10_base_likelihood=-9.01571	log10_qual_likelihood_position_model=7.29251	log10_strand_likelihood_position_model=0.676769	new_cov=4/1	polymorphism_quality=3.6	quality=3.6	quality_position_model=0.0123998	ref_cov=132/108	reject=POLYMORPHISM_STRAND	tot_cov=136/109
RA	2543	.	NC_007779	3442184	0	A	G	bias_e_value=3492620	bias_p_value=0.751695	fisher_strand_p_value=0.384171	frequency=1.942825e-02	genotype_quality=928.8	ks_quality_p_value=1	log10_base_likelihood=-7.49919	log10_qual_likelihood_position_model=5.2071	log10_strand_likelihood_position_model=0.680779	new_cov=4/1	polymorphism_quality=2.0	quality=2.0	quality_position_model=0.00280981	ref_cov=131/108	reject=POLYMORPHISM_STRAND	tot_cov=135/109
RA	2544	.	NC_007779	3442185	0	T	A	bias_e_value=3477460	bias_p_value=0.748431	fisher_strand_p_value=0.381317	frequency=1.777840e-02	genotype_quality=984.8	ks_quality_p_value=0.998578	log10_base_likelihood=-6.94852	log10_qual_likelihood_position_model=5.98232	log10_strand_likelihood_position_model=0.694147	new_cov=4/1	polymorphism_quality=1.4	quality=1.4	quality_position_model=0.132537	ref_cov=135/114	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=139/115
RA	2545	.	NC_007779	3442186	0	T	G	bias_e_value=3475500	bias_p_value=0.748009	fisher_strand_p_value=0.380338	frequency=1.655197e-02	genotype_quality=993.4	ks_quality_p_value=1	log10_base_likelihood=-8.1107	log10_qual_likelihood_position_model=5.90296	log10_strand_likelihood_position_model=0.698987	new_cov=4/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=0.00365958	ref_cov=135/115	reject=POLYMORPHISM_STRAND	tot_cov=139/116
RA	2546	.	NC_007779	3442192	0	T	C	bias_e_value=3451350	bias_p_value=0.742812	fisher_strand_p_value=0.377965	frequency=1.951122e-02	genotype_quality=969.2	ks_quality_p_value=0.992159	log10_base_likelihood=-7.34367	log10_qual_likelihood_position_model=5.58851	log10_strand_likelihood_position_model=0.711408	new_cov=4/1	polymorphism_quality=1.8	quality=1.8	quality_position_model=0.0124903	ref_cov=132/115	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=136/116
RA	2547	.	NC_007779	3442193	0	A	G	bias_e_value=3457040	bias_p_value=0.744036	fisher_strand_p_value=0.377227	frequency=1.965809e-02	genotype_quality=959.3	ks_quality_p_value=0.997412	log10_base_likelihood=-7.47043	log10_qual_likelihood_position_model=6.41323	log10_strand_likelihood_position_model=0.71567	new_cov=4/1	polymorphism_quality=2.0	quality=2.0	quality_position_model=0.102263	ref_cov=131/115	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=135/116
RA	2548	.	NC_007779	3442198	0	C	G	bias_e_value=3444630	bias_p_value=0.741365	fisher_strand_p_value=0.374498	frequency=1.982212e-02	genotype_quality=1024.1	ks_quality_p_value=0.997412	log10_base_likelihood=-11.6445	log10_qual_likelihood_position_model=2.67933	log10_strand_likelihood_position_model=0.734469	new_cov=4/1	polymorphism_quality=6.2	quality=6.2	quality_position_model=3.22773e-10	ref_cov=129/117	reject=POLYMORPHISM_STRAND	tot_cov=133/118
RA	2549	.	NC_007779	3442199	0	A	C	bias_e_value=3410890	bias_p_value=0.734103	fisher_strand_p_value=0.373359	frequency=1.971912e-02	genotype_quality=985.2	ks_quality_p_value=0.9809	log10_base_likelihood=-12.8828	log10_qual_likelihood_position_model=2.41147	log10_strand_likelihood_position_model=0.744543	new_cov=4/1	polymorphism_quality=7.5	quality=7.5	quality_position_model=9.50884e-12	ref_cov=129/119	reject=POLYMORPHISM_STRAND	tot_cov=133/120
RA	2550	.	NC_007779	3442207	0	A	G	bias_e_value=3332430	bias_p_value=0.717217	fisher_strand_p_value=0.372911	frequency=2.071095e-02	genotype_quality=915.3	ks_quality_p_value=0.937998	log10_base_likelihood=-9.24396	log10_qual_likelihood_position_model=2.74357	log10_strand_likelihood_position_model=0.746364	new_cov=4/1	polymorphism_quality=3.8	quality=3.8	quality_position_model=1.14556e-07	ref_cov=122/113	reject=POLYMORPHISM_STRAND	tot_cov=126/114
RA	2551	.	NC_007779	3442213	0	C	T	bias_e_value=3427710	bias_p_value=0.737725	fisher_strand_p_value=0.370408	frequency=1.981926e-02	genotype_quality=974.3	ks_quality_p_value=0.998495	log10_base_likelihood=-7.14826	log10_qual_likelihood_position_model=5.72673	log10_strand_likelihood_position_model=0.783432	new_cov=4/1	polymorphism_quality=1.6	quality=1.6	quality_position_model=0.0392863	ref_cov=122/120	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=126/121
RA	2552	.	NC_007779	3442219	0	A	G	bias_e_value=2362280	bias_p_value=0.508419	fisher_strand_p_value=0.371107	frequency=2.112865e-02	genotype_quality=895.6	ks_quality_p_value=0.516667	log10_base_likelihood=-10.5516	log10_qual_likelihood_position_model=4.12449	log10_strand_likelihood_position_model=0.766291	new_cov=4/1	polymorphism_quality=5.1	quality=5.1	quality_position_model=1.43069e-07	ref_cov=118/113	reject=POLYMORPHISM_STRAND	tot_cov=122/114
RA	2553	.	NC_007779	3442222	0	T	C	bias_e_value=3409130	bias_p_value=0.733726	fisher_strand_p_value=0.371473	frequency=2.122021e-02	genotype_quality=890.0	ks_quality_p_value=0.984868	log10_base_likelihood=-8.99585	log10_qual_likelihood_position_model=3.97908	log10_strand_likelihood_position_model=0.760436	new_cov=4/1	polymorphism_quality=3.5	quality=3.5	quality_position_model=4.14371e-06	ref_cov=117/111	reject=POLYMORPHISM_STRAND	tot_cov=121/112
RA	2554	.	NC_007779	3442225	0	C	T	bias_e_value=3383010	bias_p_value=0.728103	fisher_strand_p_value=0.37421	frequency=2.157116e-02	genotype_quality=908.9	ks_quality_p_value=0.962834	log10_base_likelihood=-8.8489	log10_qual_likelihood_position_model=3.76361	log10_strand_likelihood_position_model=0.733365	new_cov=4/1	polymorphism_quality=3.4	quality=3.4	quality_position_model=3.2913e-06	ref_cov=118/107	reject=POLYMORPHISM_STRAND	tot_cov=122/108
RA	2555	.	NC_007779	3442229	0	G	C	bias_e_value=4268750	bias_p_value=0.918735	fisher_strand_p_value=0.626648	frequency=1.778316e-02	genotype_quality=879.1	ks_quality_p_value=0.99731	log10_base_likelihood=-7.06038	log10_qual_likelihood_position_model=3.39	log10_strand_likelihood_position_model=0.535787	new_cov=3/1	polymorphism_quality=1.5	quality=1.5	quality_position_model=6.30004e-05	ref_cov=116/100	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=119/101
RA	2556	.	NC_007779	3442231	0	A	T	bias_e_value=4255270	bias_p_value=0.915834	fisher_strand_p_value=0.627122	frequency=1.787853e-02	genotype_quality=855.4	ks_quality_p_value=0.986819	log10_base_likelihood=-8.60727	log10_qual_likelihood_position_model=2.69288	log10_strand_likelihood_position_model=0.533299	new_cov=3/1	polymorphism_quality=3.1	quality=3.1	quality_position_model=2.78963e-07	ref_cov=118/101	reject=POLYMORPHISM_STRAND	tot_cov=121/102
RA	2557	.	NC_007779	3447060	0	T	A	bias_e_value=10445.4	bias_p_value=0.0022481	fisher_strand_p_value=0.000240928	frequency=4.863358e-02	genotype_quality=835.3	ks_quality_p_value=1	log10_base_likelihood=-12.7093	log10_qual_likelihood_position_model=17.1242	log10_strand_likelihood_position_model=3.6866	new_cov=0/13	polymorphism_quality=7.3	quality=7.3	quality_position_model=Inf	ref_cov=116/119	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=116/132
RA	2558	.	NC_007779	3447067	1	.	C	bias_e_value=2798770	bias_p_value=0.60236	fisher_strand_p_value=0.2542	frequency=1.227283e-02	genotype_quality=1087.2	ks_quality_p_value=1	log10_base_likelihood=-6.92605	log10_qual_likelihood_position_model=3.53109	log10_strand_likelihood_position_model=0.785281	new_cov=0/3	polymorphism_quality=1.4	quality=1.4	quality_position_model=0.000228883	ref_cov=110/131	reject=EVALUE,POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=110/134
RA	2559	.	NC_007779	3449979	0	C	T	bias_e_value=4580360	bias_p_value=0.985802	fisher_strand_p_value=1	frequency=3.192806e-02	genotype_quality=968.8	ks_quality_p_value=0.836292	log10_base_likelihood=-17.2334	log10_qual_likelihood_position_model=3.3646	log10_strand_likelihood_position_model=0.55712	new_cov=4/4	polymorphism_quality=11.9	quality=11.9	quality_position_model=2.12562e-15	ref_cov=118/124	tot_cov=122/128
RA	2560	.	NC_007779	3449991	0	G	A	bias_e_value=3862880	bias_p_value=0.831382	fisher_strand_p_value=0.499311	frequency=8.116341e-02	genotype_quality=897.4	ks_quality_p_value=0.958811	log10_base_likelihood=-51.616	log10_qual_likelihood_position_model=6.89165	log10_strand_likelihood_position_model=0.86339	new_cov=8/13	polymorphism_quality=46.5	quality=46.5	quality_position_model=3.3418e-46	ref_cov=110/125	tot_cov=118/139
RA	2561	.	NC_007779	3449994	0	A	T	bias_e_value=3725530	bias_p_value=0.801821	fisher_strand_p_value=0.648485	frequency=8.073282e-02	genotype_quality=934.4	ks_quality_p_value=0.679614	log10_base_likelihood=-61.9927	log10_qual_likelihood_position_model=11.9598	log10_strand_likelihood_position_model=0.841905	new_cov=8/13	polymorphism_quality=57.0	quality=57.0	quality_position_model=1.47657e-51	ref_cov=110/129	tot_cov=118/142
RA	2562	.	NC_007779	3449997	0	T	C	bias_e_value=3138190	bias_p_value=0.675413	fisher_strand_p_value=0.500453	frequency=8.104706e-02	genotype_quality=850.0	ks_quality_p_value=0.623454	log10_base_likelihood=-58.4817	log10_qual_likelihood_position_model=5.85193	log10_strand_likelihood_position_model=0.858813	new_cov=8/13	polymorphism_quality=53.4	quality=53.4	quality_position_model=3.78702e-54	ref_cov=111/127	tot_cov=119/140
RA	2563	.	NC_007779	3450003	0	T	C	bias_e_value=3127490	bias_p_value=0.673109	fisher_strand_p_value=0.648721	frequency=7.890797e-02	genotype_quality=884.9	ks_quality_p_value=0.477919	log10_base_likelihood=-56.5258	log10_qual_likelihood_position_model=6.37902	log10_strand_likelihood_position_model=0.839147	new_cov=8/13	polymorphism_quality=51.5	quality=51.5	quality_position_model=1.12751e-51	ref_cov=112/132	tot_cov=120/146
RA	2564	.	NC_007779	3450006	0	G	A	bias_e_value=3359270	bias_p_value=0.722994	fisher_strand_p_value=0.502398	frequency=7.631826e-02	genotype_quality=968.2	ks_quality_p_value=0.70727	log10_base_likelihood=-54.4443	log10_qual_likelihood_position_model=5.31215	log10_strand_likelihood_position_model=0.855323	new_cov=8/13	polymorphism_quality=49.4	quality=49.4	quality_position_model=1.22313e-50	ref_cov=118/136	tot_cov=126/149
RA	2565	.	NC_007779	3450008	0	T	C	bias_e_value=3027190	bias_p_value=0.651522	fisher_strand_p_value=0.501221	frequency=7.660151e-02	genotype_quality=893.9	ks_quality_p_value=0.58269	log10_base_likelihood=-57.3948	log10_qual_likelihood_position_model=6.68459	log10_strand_likelihood_position_model=0.860471	new_cov=8/13	polymorphism_quality=52.3	quality=52.3	quality_position_model=3.21853e-52	ref_cov=118/135	tot_cov=126/148
RA	2566	.	NC_007779	3450012	0	T	G	bias_e_value=1757720	bias_p_value=0.378303	fisher_strand_p_value=0.501115	frequency=7.554340e-02	genotype_quality=925.5	ks_quality_p_value=0.243123	log10_base_likelihood=-71.2459	log10_qual_likelihood_position_model=9.27518	log10_strand_likelihood_position_model=0.862387	new_cov=8/13	polymorphism_quality=66.2	quality=66.2	quality_position_model=1.60393e-63	ref_cov=120/137	tot_cov=128/150
RA	2567	.	NC_007779	3450018	0	T	C	bias_e_value=1037530	bias_p_value=0.223301	fisher_strand_p_value=0.497589	frequency=7.713270e-02	genotype_quality=877.1	ks_quality_p_value=0.116673	log10_base_likelihood=-56.0991	log10_qual_likelihood_position_model=7.80599	log10_strand_likelihood_position_model=0.883464	new_cov=8/13	polymorphism_quality=51.0	quality=51.0	quality_position_model=9.08992e-50	ref_cov=119/132	tot_cov=127/145
RA	2568	.	NC_007779	3450021	0	A	G	bias_e_value=1276630	bias_p_value=0.274762	fisher_strand_p_value=0.0771318	frequency=5.938244e-02	genotype_quality=972.8	ks_quality_p_value=1	log10_base_likelihood=-35.513	log10_qual_likelihood_position_model=9.58275	log10_strand_likelihood_position_model=1.48676	new_cov=4/13	polymorphism_quality=30.4	quality=30.4	quality_position_model=1.16616e-26	ref_cov=122/135	tot_cov=129/148
RA	2569	.	NC_007779	3450024	0	T	C	bias_e_value=3359780	bias_p_value=0.723104	fisher_strand_p_value=0.355437	frequency=6.524944e-02	genotype_quality=1004.1	ks_quality_p_value=1	log10_base_likelihood=-43.0676	log10_qual_likelihood_position_model=10.1117	log10_strand_likelihood_position_model=0.974099	new_cov=7/13	polymorphism_quality=37.9	quality=37.9	quality_position_model=2.95795e-34	ref_cov=128/142	tot_cov=135/155
RA	2570	.	NC_007779	3450030	0	G	A	bias_e_value=2516080	bias_p_value=0.54152	fisher_strand_p_value=0.235263	frequency=6.432772e-02	genotype_quality=1071.1	ks_quality_p_value=0.902963	log10_base_likelihood=-39.6644	log10_qual_likelihood_position_model=13.559	log10_strand_likelihood_position_model=1.10996	new_cov=6/13	polymorphism_quality=34.5	quality=34.5	quality_position_model=3.23618e-27	ref_cov=131/144	tot_cov=137/157
RA	2571	.	NC_007779	3450039	0	A	G	bias_e_value=896239	bias_p_value=0.192892	fisher_strand_p_value=0.239095	frequency=6.554127e-02	genotype_quality=1004.3	ks_quality_p_value=0.19957	log10_base_likelihood=-45.6548	log10_qual_likelihood_position_model=10.4469	log10_strand_likelihood_position_model=1.06258	new_cov=6/13	polymorphism_quality=40.5	quality=40.5	quality_position_model=1.96494e-36	ref_cov=126/144	tot_cov=132/157
RA	2572	.	NC_007779	3450048	0	A	C	bias_e_value=20328.6	bias_p_value=0.0043752	fisher_strand_p_value=0.23741	frequency=6.895065e-02	genotype_quality=970.3	ks_quality_p_value=0.00214754	log10_base_likelihood=-60.5107	log10_qual_likelihood_position_model=11.5956	log10_strand_likelihood_position_model=1.07033	new_cov=6/13	polymorphism_quality=55.5	quality=55.5	quality_position_model=3.32285e-50	ref_cov=120/136	tot_cov=126/149
RA	2573	.	NC_007779	3450051	0	C	A	bias_e_value=12994	bias_p_value=0.00279662	fisher_strand_p_value=0.238327	frequency=6.661797e-02	genotype_quality=1071.0	ks_quality_p_value=0.00129147	log10_base_likelihood=-48.4942	log10_qual_likelihood_position_model=14.7846	log10_strand_likelihood_position_model=1.0649	new_cov=6/13	polymorphism_quality=43.4	quality=43.4	quality_position_model=6.36321e-35	ref_cov=122/139	tot_cov=128/153
RA	2574	.	NC_007779	3450069	0	T	G	bias_e_value=1301450	bias_p_value=0.280102	fisher_strand_p_value=0.452497	frequency=6.319618e-02	genotype_quality=928.4	ks_quality_p_value=0.175089	log10_base_likelihood=-55.0397	log10_qual_likelihood_position_model=8.97652	log10_strand_likelihood_position_model=0.90184	new_cov=6/11	polymorphism_quality=50.0	quality=50.0	quality_position_model=1.64937e-47	ref_cov=120/132	tot_cov=126/143
RA	2575	.	NC_007779	3450079	0	T	C	bias_e_value=148753	bias_p_value=0.0320151	fisher_strand_p_value=0.039857	frequency=3.482628e-02	genotype_quality=938.8	ks_quality_p_value=0.127932	log10_base_likelihood=-20.9862	log10_qual_likelihood_position_model=6.4092	log10_strand_likelihood_position_model=1.5806	new_cov=1/8	polymorphism_quality=15.7	quality=15.7	quality_position_model=4.44444e-15	ref_cov=119/130	reject=POLYMORPHISM_STRAND	tot_cov=120/138
RA	2576	.	NC_007779	3450210	0	C	A	bias_e_value=4646330	bias_p_value=0.999999	fisher_strand_p_value=1	frequency=3.993225e-02	genotype_quality=1015.6	ks_quality_p_value=0.998657	log10_base_likelihood=-21.772	log10_qual_likelihood_position_model=5.39752	log10_strand_likelihood_position_model=0.610501	new_cov=5/5	polymorphism_quality=16.5	quality=16.5	quality_position_model=6.91038e-18	ref_cov=128/111	tot_cov=133/116
RA	2577	.	NC_007779	3450213	0	T	A	bias_e_value=4523750	bias_p_value=0.973618	fisher_strand_p_value=1	frequency=3.858280e-02	genotype_quality=940.3	ks_quality_p_value=0.779268	log10_base_likelihood=-23.7505	log10_qual_likelihood_position_model=6.33048	log10_strand_likelihood_position_model=0.607018	new_cov=5/5	polymorphism_quality=18.5	quality=18.5	quality_position_model=5.98184e-19	ref_cov=129/115	tot_cov=135/120
RA	2578	.	NC_007779	3450219	0	T	C	bias_e_value=4591990	bias_p_value=0.988304	fisher_strand_p_value=1	frequency=3.996563e-02	genotype_quality=915.5	ks_quality_p_value=0.851008	log10_base_likelihood=-25.1262	log10_qual_likelihood_position_model=3.48863	log10_strand_likelihood_position_model=0.61446	new_cov=5/5	polymorphism_quality=19.9	quality=19.9	quality_position_model=3.30573e-23	ref_cov=130/110	tot_cov=135/115
RA	2579	.	NC_007779	3450220	0	T	A	bias_e_value=4366530	bias_p_value=0.939779	fisher_strand_p_value=0.759115	frequency=4.199314e-02	genotype_quality=911.5	ks_quality_p_value=0.887438	log10_base_likelihood=-28.3356	log10_qual_likelihood_position_model=4.04242	log10_strand_likelihood_position_model=0.618886	new_cov=5/5	polymorphism_quality=23.1	quality=23.1	quality_position_model=6.96261e-26	ref_cov=125/103	tot_cov=130/108
RA	2580	.	NC_007779	3450221	0	T	G	bias_e_value=3835470	bias_p_value=0.825484	fisher_strand_p_value=0.759115	frequency=4.200840e-02	genotype_quality=902.0	ks_quality_p_value=0.62023	log10_base_likelihood=-31.7871	log10_qual_likelihood_position_model=4.65238	log10_strand_likelihood_position_model=0.618886	new_cov=5/5	polymorphism_quality=26.6	quality=26.6	quality_position_model=9.4847e-29	ref_cov=125/103	tot_cov=130/108
RA	2581	.	NC_007779	3450234	0	G	A	bias_e_value=4423070	bias_p_value=0.951949	fisher_strand_p_value=0.709581	frequency=1.257415e-01	genotype_quality=826.7	ks_quality_p_value=0.99561	log10_base_likelihood=-81.4168	log10_qual_likelihood_position_model=12.286	log10_strand_likelihood_position_model=0.894418	new_cov=19/14	polymorphism_quality=76.4	quality=76.4	quality_position_model=1.13069e-70	ref_cov=120/109	tot_cov=139/123
RA	2582	.	NC_007779	3450240	0	A	G	bias_e_value=3187310	bias_p_value=0.685985	fisher_strand_p_value=0.45873	frequency=1.222887e-01	genotype_quality=796.0	ks_quality_p_value=0.700194	log10_base_likelihood=-89.1085	log10_qual_likelihood_position_model=11.1949	log10_strand_likelihood_position_model=0.98887	new_cov=19/14	polymorphism_quality=84.1	quality=84.1	quality_position_model=2.1833e-79	ref_cov=117/119	tot_cov=136/133
RA	2583	.	NC_007779	3450246	0	A	C	bias_e_value=2751070	bias_p_value=0.592096	fisher_strand_p_value=0.459622	frequency=1.265302e-01	genotype_quality=777.3	ks_quality_p_value=0.53693	log10_base_likelihood=-112.594	log10_qual_likelihood_position_model=12.1309	log10_strand_likelihood_position_model=0.970392	new_cov=19/14	polymorphism_quality=107.7	quality=107.7	quality_position_model=5.19457e-102	ref_cov=113/113	tot_cov=132/127
RA	2584	.	NC_007779	3450247	0	C	T	bias_e_value=3090740	bias_p_value=0.665201	fisher_strand_p_value=0.457687	frequency=1.307540e-01	genotype_quality=781.4	ks_quality_p_value=0.662778	log10_base_likelihood=-86.1894	log10_qual_likelihood_position_model=10.5988	log10_strand_likelihood_position_model=0.977648	new_cov=19/14	polymorphism_quality=81.2	quality=81.2	quality_position_model=4.54434e-77	ref_cov=109/110	tot_cov=128/124
RA	2585	.	NC_007779	3450248	0	G	T	bias_e_value=2633140	bias_p_value=0.566713	fisher_strand_p_value=0.455259	frequency=1.318774e-01	genotype_quality=908.7	ks_quality_p_value=0.503249	log10_base_likelihood=-94.7026	log10_qual_likelihood_position_model=14.2485	log10_strand_likelihood_position_model=1.01504	new_cov=19/14	polymorphism_quality=89.8	quality=89.8	quality_position_model=6.57362e-82	ref_cov=106/111	tot_cov=125/125
RA	2586	.	NC_007779	3450252	0	G	C	bias_e_value=3202680	bias_p_value=0.689292	fisher_strand_p_value=0.352405	frequency=1.308465e-01	genotype_quality=856.9	ks_quality_p_value=0.919749	log10_base_likelihood=-98.5307	log10_qual_likelihood_position_model=13.9737	log10_strand_likelihood_position_model=1.05663	new_cov=19/14	polymorphism_quality=93.6	quality=93.6	quality_position_model=5.56925e-86	ref_cov=105/114	tot_cov=124/128
RA	2587	.	NC_007779	3450254	0	A	G	bias_e_value=1441240	bias_p_value=0.310188	fisher_strand_p_value=0.350642	frequency=1.302490e-01	genotype_quality=705.6	ks_quality_p_value=0.260799	log10_base_likelihood=-91.4582	log10_qual_likelihood_position_model=12.8058	log10_strand_likelihood_position_model=1.09019	new_cov=19/14	polymorphism_quality=86.5	quality=86.5	quality_position_model=5.01067e-80	ref_cov=104/116	tot_cov=123/130
RA	2588	.	NC_007779	3450255	0	T	C	bias_e_value=1716030	bias_p_value=0.369331	fisher_strand_p_value=0.267629	frequency=1.300092e-01	genotype_quality=734.8	ks_quality_p_value=0.439435	log10_base_likelihood=-86.2153	log10_qual_likelihood_position_model=13.889	log10_strand_likelihood_position_model=1.11397	new_cov=19/14	polymorphism_quality=81.2	quality=81.2	quality_position_model=1.17e-73	ref_cov=103/117	tot_cov=122/131
RA	2589	.	NC_007779	3450258	0	A	G	bias_e_value=17045.4	bias_p_value=0.00366858	fisher_strand_p_value=0.264117	frequency=1.314702e-01	genotype_quality=709.4	ks_quality_p_value=0.00158191	log10_base_likelihood=-94.864	log10_qual_likelihood_position_model=12.529	log10_strand_likelihood_position_model=1.14003	new_cov=19/14	polymorphism_quality=89.9	quality=89.9	quality_position_model=1.14083e-83	ref_cov=101/117	tot_cov=121/131
RA	2590	.	NC_007779	3450261	0	T	G	bias_e_value=1689980	bias_p_value=0.363724	fisher_strand_p_value=0.263567	frequency=1.267796e-01	genotype_quality=762.8	ks_quality_p_value=0.436319	log10_base_likelihood=-116.096	log10_qual_likelihood_position_model=9.3652	log10_strand_likelihood_position_model=1.16033	new_cov=19/14	polymorphism_quality=111.2	quality=111.2	quality_position_model=4.21671e-108	ref_cov=104/122	tot_cov=123/136
RA	2591	.	NC_007779	3450265	0	G	A	bias_e_value=2889940	bias_p_value=0.621983	fisher_strand_p_value=0.268828	frequency=1.267009e-01	genotype_quality=824.7	ks_quality_p_value=1	log10_base_likelihood=-80.4708	log10_qual_likelihood_position_model=12.9283	log10_strand_likelihood_position_model=1.11122	new_cov=19/14	polymorphism_quality=75.5	quality=75.5	quality_position_model=7.3158e-69	ref_cov=106/120	tot_cov=125/134
RA	2592	.	NC_007779	3450267	0	G	A	bias_e_value=2461420	bias_p_value=0.529755	fisher_strand_p_value=0.268828	frequency=1.270275e-01	genotype_quality=782.4	ks_quality_p_value=0.762293	log10_base_likelihood=-85.5449	log10_qual_likelihood_position_model=11.3027	log10_strand_likelihood_position_model=1.11122	new_cov=19/14	polymorphism_quality=80.6	quality=80.6	quality_position_model=1.39254e-75	ref_cov=106/120	tot_cov=125/134
RA	2593	.	NC_007779	3450270	0	T	A	bias_e_value=2453840	bias_p_value=0.528125	fisher_strand_p_value=0.269601	frequency=1.254478e-01	genotype_quality=871.9	ks_quality_p_value=0.756299	log10_base_likelihood=-102.481	log10_qual_likelihood_position_model=9.98221	log10_strand_likelihood_position_model=1.10947	new_cov=19/14	polymorphism_quality=97.6	quality=97.6	quality_position_model=6.87559e-94	ref_cov=108/122	tot_cov=127/136
RA	2594	.	NC_007779	3450273	0	A	C	bias_e_value=2104270	bias_p_value=0.452889	fisher_strand_p_value=0.270722	frequency=1.226802e-01	genotype_quality=825.1	ks_quality_p_value=0.59036	log10_base_likelihood=-120.146	log10_qual_likelihood_position_model=7.95084	log10_strand_likelihood_position_model=1.10697	new_cov=19/14	polymorphism_quality=115.2	quality=115.2	quality_position_model=1.24805e-113	ref_cov=111/125	tot_cov=130/139
RA	2595	.	NC_007779	3450279	0	A	G	bias_e_value=1699200	bias_p_value=0.365708	fisher_strand_p_value=0.347752	frequency=1.158376e-01	genotype_quality=807.7	ks_quality_p_value=0.333338	log10_base_likelihood=-87.0155	log10_qual_likelihood_position_model=10.7417	log10_strand_likelihood_position_model=1.06654	new_cov=18/14	polymorphism_quality=82.0	quality=82.0	quality_position_model=1.15195e-77	ref_cov=113/131	tot_cov=131/145
RA	2596	.	NC_007779	3450303	0	G	C	bias_e_value=3448930	bias_p_value=0.742292	fisher_strand_p_value=0.375591	frequency=8.647823e-02	genotype_quality=965.3	ks_quality_p_value=0.997018	log10_base_likelihood=-66.3772	log10_qual_likelihood_position_model=7.86367	log10_strand_likelihood_position_model=0.948132	new_cov=12/10	polymorphism_quality=61.4	quality=61.4	quality_position_model=5.7677e-60	ref_cov=102/130	tot_cov=114/140
RA	2597	.	NC_007779	3451558	0	A	G	bias_e_value=1620060	bias_p_value=0.348674	fisher_strand_p_value=0.137782	frequency=5.100060e-02	genotype_quality=852.6	ks_quality_p_value=0.784847	log10_base_likelihood=-28.8845	log10_qual_likelihood_position_model=6.68205	log10_strand_likelihood_position_model=1.21446	new_cov=3/9	polymorphism_quality=23.7	quality=23.7	quality_position_model=3.58706e-23	ref_cov=111/112	tot_cov=114/121
RA	2598	.	NC_007779	3451560	0	C	T	bias_e_value=1665730	bias_p_value=0.358505	fisher_strand_p_value=0.136854	frequency=5.008984e-02	genotype_quality=913.1	ks_quality_p_value=0.822764	log10_base_likelihood=-26.307	log10_qual_likelihood_position_model=7.30147	log10_strand_likelihood_position_model=1.23711	new_cov=3/9	polymorphism_quality=21.1	quality=21.1	quality_position_model=6.45203e-20	ref_cov=114/113	tot_cov=117/122
RA	2599	.	NC_007779	3451569	0	T	G	bias_e_value=3980750	bias_p_value=0.856751	fisher_strand_p_value=0.515004	frequency=9.323502e-02	genotype_quality=811.7	ks_quality_p_value=1	log10_base_likelihood=-74.659	log10_qual_likelihood_position_model=11.2804	log10_strand_likelihood_position_model=0.874988	new_cov=9/14	polymorphism_quality=69.7	quality=69.7	quality_position_model=6.38339e-65	ref_cov=105/117	tot_cov=115/131
RA	2600	.	NC_007779	3451570	0	T	C	bias_e_value=4357230	bias_p_value=0.937778	fisher_strand_p_value=0.670984	frequency=9.625769e-02	genotype_quality=798.8	ks_quality_p_value=0.99652	log10_base_likelihood=-60.7034	log10_qual_likelihood_position_model=8.22949	log10_strand_likelihood_position_model=0.820714	new_cov=10/14	polymorphism_quality=55.7	quality=55.7	quality_position_model=4.97227e-54	ref_cov=105/118	tot_cov=115/132
RA	2601	.	NC_007779	3451585	0	T	G	bias_e_value=4464510	bias_p_value=0.960868	fisher_strand_p_value=0.734749	frequency=1.626644e-01	genotype_quality=667.2	ks_quality_p_value=0.998459	log10_base_likelihood=-149.295	log10_qual_likelihood_position_model=9.36969	log10_strand_likelihood_position_model=0.901846	new_cov=21/20	polymorphism_quality=144.4	quality=144.4	quality_position_model=1.29544e-141	ref_cov=101/110	tot_cov=122/130
RA	2602	.	NC_007779	3451588	0	T	A	bias_e_value=4305370	bias_p_value=0.926618	fisher_strand_p_value=0.734749	frequency=1.626754e-01	genotype_quality=751.9	ks_quality_p_value=0.874088	log10_base_likelihood=-134.465	log10_qual_likelihood_position_model=9.71638	log10_strand_likelihood_position_model=0.901846	new_cov=21/20	polymorphism_quality=129.6	quality=129.6	quality_position_model=2.06124e-126	ref_cov=101/110	tot_cov=122/130
RA	2603	.	NC_007779	3451600	0	T	C	bias_e_value=2934560	bias_p_value=0.631586	fisher_strand_p_value=0.760382	frequency=1.891565e-01	genotype_quality=689.8	ks_quality_p_value=0.363257	log10_base_likelihood=-163.338	log10_qual_likelihood_position_model=9.68507	log10_strand_likelihood_position_model=0.958784	new_cov=27/26	polymorphism_quality=158.5	quality=158.5	quality_position_model=2.63891e-155	ref_cov=108/119	tot_cov=135/145
RA	2604	.	NC_007779	3451602	0	C	G	bias_e_value=1273530	bias_p_value=0.274094	fisher_strand_p_value=0.648634	frequency=1.872373e-01	genotype_quality=820.2	ks_quality_p_value=0.118513	log10_base_likelihood=-185.295	log10_qual_likelihood_position_model=9.4885	log10_strand_likelihood_position_model=0.976422	new_cov=27/26	polymorphism_quality=180.5	quality=180.5	quality_position_model=1.80373e-177	ref_cov=108/122	tot_cov=135/148
RA	2605	.	NC_007779	3451605	0	G	T	bias_e_value=2923260	bias_p_value=0.629155	fisher_strand_p_value=0.760053	frequency=1.926861e-01	genotype_quality=878.0	ks_quality_p_value=0.360935	log10_base_likelihood=-160.526	log10_qual_likelihood_position_model=12.9667	log10_strand_likelihood_position_model=0.95354	new_cov=27/26	polymorphism_quality=155.7	quality=155.7	quality_position_model=3.30118e-149	ref_cov=106/116	tot_cov=133/142
RA	2606	.	NC_007779	3451606	0	C	T	bias_e_value=2182900	bias_p_value=0.469811	fisher_strand_p_value=0.760053	frequency=1.926641e-01	genotype_quality=715.0	ks_quality_p_value=0.222614	log10_base_likelihood=-155.249	log10_qual_likelihood_position_model=9.79533	log10_strand_likelihood_position_model=0.95354	new_cov=27/26	polymorphism_quality=150.4	quality=150.4	quality_position_model=4.24017e-147	ref_cov=106/116	tot_cov=133/142
RA	2607	.	NC_007779	3451615	0	T	C	bias_e_value=233856	bias_p_value=0.0503313	fisher_strand_p_value=0.136112	frequency=2.324581e-01	genotype_quality=625.4	ks_quality_p_value=0.0644678	log10_base_likelihood=-222.669	log10_qual_likelihood_position_model=14.1052	log10_strand_likelihood_position_model=1.45271	new_cov=39/31	polymorphism_quality=217.9	quality=217.9	quality_position_model=8.67827e-210	ref_cov=105/126	tot_cov=144/157
RA	2608	.	NC_007779	3451624	0	C	A	bias_e_value=2386240	bias_p_value=0.513576	fisher_strand_p_value=0.198475	frequency=2.620554e-01	genotype_quality=826.2	ks_quality_p_value=0.981872	log10_base_likelihood=-244.226	log10_qual_likelihood_position_model=21.6045	log10_strand_likelihood_position_model=1.39338	new_cov=45/37	polymorphism_quality=239.5	quality=239.5	quality_position_model=6.41442e-224	ref_cov=106/124	tot_cov=152/161
RA	2609	.	NC_007779	3451630	0	A	G	bias_e_value=56042.4	bias_p_value=0.0120616	fisher_strand_p_value=0.138557	frequency=2.782459e-01	genotype_quality=551.0	ks_quality_p_value=0.0117286	log10_base_likelihood=-292.87	log10_qual_likelihood_position_model=13.887	log10_strand_likelihood_position_model=1.53175	new_cov=50/41	polymorphism_quality=288.2	quality=288.2	quality_position_model=3.42679e-280	ref_cov=107/129	tot_cov=157/170
RA	2610	.	NC_007779	3451648	0	T	A	bias_e_value=1088520	bias_p_value=0.234275	fisher_strand_p_value=0.101613	frequency=3.087134e-01	genotype_quality=586.2	ks_quality_p_value=0.609722	log10_base_likelihood=-369.892	log10_qual_likelihood_position_model=17.686	log10_strand_likelihood_position_model=1.66405	new_cov=58/48	polymorphism_quality=inf	quality=inf	quality_position_model=0	ref_cov=106/131	tot_cov=164/179
RA	2611	.	NC_007779	3451672	0	A	G	bias_e_value=2835980	bias_p_value=0.61037	fisher_strand_p_value=0.280781	frequency=2.823377e-01	genotype_quality=571.4	ks_quality_p_value=0.926335	log10_base_likelihood=-311.916	log10_qual_likelihood_position_model=12.1001	log10_strand_likelihood_position_model=1.27933	new_cov=52/44	polymorphism_quality=307.2	quality=307.2	quality_position_model=2.7149e-301	ref_cov=116/128	reject=SURROUNDING_HOMOPOLYMER	tot_cov=168/172
RA	2612	.	NC_007779	3451677	0	C	T	bias_e_value=3517410	bias_p_value=0.75703	fisher_strand_p_value=0.390691	frequency=2.756529e-01	genotype_quality=646.4	ks_quality_p_value=0.997695	log10_base_likelihood=-265.328	log10_qual_likelihood_position_model=16.2068	log10_strand_likelihood_position_model=1.17887	new_cov=48/43	polymorphism_quality=260.6	quality=260.6	quality_position_model=1.17013e-250	ref_cov=113/126	tot_cov=161/169
RA	2613	.	NC_007779	3451680	0	G	T	bias_e_value=2082590	bias_p_value=0.448222	fisher_strand_p_value=0.6019	frequency=2.468009e-01	genotype_quality=832.0	ks_quality_p_value=0.261321	log10_base_likelihood=-242.941	log10_qual_likelihood_position_model=17.649	log10_strand_likelihood_position_model=1.07525	new_cov=41/37	polymorphism_quality=238.2	quality=238.2	quality_position_model=6.54061e-227	ref_cov=115/123	tot_cov=156/160
RA	2614	.	NC_007779	3451682	0	C	G	bias_e_value=3868020	bias_p_value=0.832488	fisher_strand_p_value=0.602304	frequency=2.461348e-01	genotype_quality=728.7	ks_quality_p_value=0.797354	log10_base_likelihood=-279.069	log10_qual_likelihood_position_model=15.242	log10_strand_likelihood_position_model=1.06647	new_cov=41/37	polymorphism_quality=274.4	quality=274.4	quality_position_model=1.72775e-265	ref_cov=116/123	tot_cov=157/160
RA	2615	.	NC_007779	3451683	0	T	A	bias_e_value=3982310	bias_p_value=0.857086	fisher_strand_p_value=0.516572	frequency=2.460361e-01	genotype_quality=727.2	ks_quality_p_value=0.997943	log10_base_likelihood=-266.922	log10_qual_likelihood_position_model=16.1392	log10_strand_likelihood_position_model=1.08451	new_cov=41/37	polymorphism_quality=262.2	quality=262.2	quality_position_model=2.04513e-252	ref_cov=115/124	tot_cov=156/161
RA	2616	.	NC_007779	3451687	0	A	C	bias_e_value=4204510	bias_p_value=0.904909	fisher_strand_p_value=0.60192	frequency=2.476544e-01	genotype_quality=602.6	ks_quality_p_value=0.991676	log10_base_likelihood=-301.406	log10_qual_likelihood_position_model=13.4574	log10_strand_likelihood_position_model=1.06636	new_cov=41/37	polymorphism_quality=296.7	quality=296.7	quality_position_model=1.2493e-289	ref_cov=115/122	tot_cov=156/159
RA	2617	.	NC_007779	3451689	0	A	G	bias_e_value=3700340	bias_p_value=0.796401	fisher_strand_p_value=0.435108	frequency=2.530208e-01	genotype_quality=607.2	ks_quality_p_value=0.997829	log10_base_likelihood=-239.296	log10_qual_likelihood_position_model=15.3835	log10_strand_likelihood_position_model=1.1418	new_cov=41/38	polymorphism_quality=234.5	quality=234.5	quality_position_model=1.83261e-225	ref_cov=108/125	tot_cov=149/163
RA	2618	.	NC_007779	3451702	0	C	A	bias_e_value=3959710	bias_p_value=0.852223	fisher_strand_p_value=0.508248	frequency=2.587657e-01	genotype_quality=762.4	ks_quality_p_value=1	log10_base_likelihood=-233.71	log10_qual_likelihood_position_model=14.5155	log10_strand_likelihood_position_model=1.10366	new_cov=41/36	polymorphism_quality=229.0	quality=229.0	quality_position_model=8.86211999999999e-221	ref_cov=106/114	tot_cov=147/150
RA	2619	.	NC_007779	3451708	0	C	A	bias_e_value=4617160	bias_p_value=0.993722	fisher_strand_p_value=0.895483	frequency=2.510481e-01	genotype_quality=817.7	ks_quality_p_value=0.993945	log10_base_likelihood=-235.36	log10_qual_likelihood_position_model=17.3297	log10_strand_likelihood_position_model=0.987984	new_cov=40/37	polymorphism_quality=230.6	quality=230.6	quality_position_model=9.93397999999999e-220	ref_cov=116/113	tot_cov=156/150
RA	2620	.	NC_007779	3451714	0	G	C	bias_e_value=1977350	bias_p_value=0.425573	fisher_strand_p_value=0.782921	frequency=2.411947e-01	genotype_quality=696.3	ks_quality_p_value=0.185585	log10_base_likelihood=-234.1	log10_qual_likelihood_position_model=19.2797	log10_strand_likelihood_position_model=0.983904	new_cov=34/35	polymorphism_quality=229.3	quality=229.3	quality_position_model=1.60789e-216	ref_cov=112/105	tot_cov=146/140
RA	2621	.	NC_007779	3451726	0	G	T	bias_e_value=2376410	bias_p_value=0.51146	fisher_strand_p_value=0.770061	frequency=4.626751e-02	genotype_quality=1028.7	ks_quality_p_value=0.25139	log10_base_likelihood=-30.1994	log10_qual_likelihood_position_model=4.78359	log10_strand_likelihood_position_model=0.684316	new_cov=7/5	polymorphism_quality=25.0	quality=25.0	quality_position_model=5.97378e-27	ref_cov=126/121	tot_cov=133/126
RA	2622	.	NC_007779	3451731	0	T	G	bias_e_value=4618160	bias_p_value=0.993936	fisher_strand_p_value=1	frequency=1.867771e-01	genotype_quality=632.6	ks_quality_p_value=0.891914	log10_base_likelihood=-174.703	log10_qual_likelihood_position_model=11.1745	log10_strand_likelihood_position_model=0.900956	new_cov=24/24	polymorphism_quality=169.9	quality=169.9	quality_position_model=2.98092e-165	ref_cov=107/102	tot_cov=131/126
RA	2623	.	NC_007779	3451735	0	T	C	bias_e_value=2668300	bias_p_value=0.57428	fisher_strand_p_value=0.863341	frequency=1.612687e-01	genotype_quality=651.8	ks_quality_p_value=0.271368	log10_base_likelihood=-119.493	log10_qual_likelihood_position_model=9.92502	log10_strand_likelihood_position_model=0.881395	new_cov=19/21	polymorphism_quality=114.6	quality=114.6	quality_position_model=3.18102e-111	ref_cov=104/104	tot_cov=123/125
RA	2624	.	NC_007779	3451753	0	A	G	bias_e_value=2796700	bias_p_value=0.601917	fisher_strand_p_value=0.685045	frequency=1.157684e-01	genotype_quality=698.3	ks_quality_p_value=0.370597	log10_base_likelihood=-73.158	log10_qual_likelihood_position_model=11.7028	log10_strand_likelihood_position_model=0.841975	new_cov=15/12	polymorphism_quality=68.2	quality=68.2	quality_position_model=5.03601e-63	ref_cov=104/102	tot_cov=119/114
RA	2625	.	NC_007779	3451756	0	A	C	bias_e_value=2697010	bias_p_value=0.580459	fisher_strand_p_value=0.277207	frequency=9.955788e-02	genotype_quality=751.8	ks_quality_p_value=0.860613	log10_base_likelihood=-75.5532	log10_qual_likelihood_position_model=12.9204	log10_strand_likelihood_position_model=1.04673	new_cov=14/9	polymorphism_quality=70.6	quality=70.6	quality_position_model=5.31839e-64	ref_cov=100/108	tot_cov=114/117
RA	2626	.	NC_007779	3451759	0	G	C	bias_e_value=2122590	bias_p_value=0.456832	fisher_strand_p_value=0.165556	frequency=6.274605e-02	genotype_quality=875.8	ks_quality_p_value=0.978407	log10_base_likelihood=-36.2095	log10_qual_likelihood_position_model=8.20816	log10_strand_likelihood_position_model=1.23728	new_cov=10/4	polymorphism_quality=31.1	quality=31.1	quality_position_model=5.33099e-29	ref_cov=101/107	tot_cov=111/111
RA	2627	.	NC_007779	3451761	0	T	A	bias_e_value=1475300	bias_p_value=0.31752	fisher_strand_p_value=0.106093	frequency=6.208038e-02	genotype_quality=807.9	ks_quality_p_value=0.891046	log10_base_likelihood=-36.1623	log10_qual_likelihood_position_model=8.22933	log10_strand_likelihood_position_model=1.24965	new_cov=10/4	polymorphism_quality=31.0	quality=31.0	quality_position_model=6.42974e-29	ref_cov=101/108	tot_cov=112/112
RA	2628	.	NC_007779	3451762	0	T	A	bias_e_value=2150420	bias_p_value=0.46282	fisher_strand_p_value=0.165684	frequency=6.207323e-02	genotype_quality=809.0	ks_quality_p_value=0.997622	log10_base_likelihood=-34.9812	log10_qual_likelihood_position_model=8.45377	log10_strand_likelihood_position_model=1.23706	new_cov=10/4	polymorphism_quality=29.8	quality=29.8	quality_position_model=1.63156e-27	ref_cov=102/108	tot_cov=112/112
RA	2629	.	NC_007779	3451768	0	A	G	bias_e_value=1356110	bias_p_value=0.291868	fisher_strand_p_value=0.103434	frequency=6.147194e-02	genotype_quality=782.4	ks_quality_p_value=0.811351	log10_base_likelihood=-34.133	log10_qual_likelihood_position_model=8.30135	log10_strand_likelihood_position_model=1.27384	new_cov=10/4	polymorphism_quality=29.0	quality=29.0	quality_position_model=8.94204e-27	ref_cov=102/111	tot_cov=113/115
RA	2630	.	NC_007779	3451769	0	C	A	bias_e_value=2124200	bias_p_value=0.457177	fisher_strand_p_value=0.165684	frequency=6.237698e-02	genotype_quality=867.7	ks_quality_p_value=0.978799	log10_base_likelihood=-32.1983	log10_qual_likelihood_position_model=8.00713	log10_strand_likelihood_position_model=1.23706	new_cov=10/4	polymorphism_quality=27.0	quality=27.0	quality_position_model=3.71141e-25	ref_cov=102/108	tot_cov=112/112
RA	2631	.	NC_007779	3451770	0	G	A	bias_e_value=2131740	bias_p_value=0.458802	fisher_strand_p_value=0.165556	frequency=6.273890e-02	genotype_quality=789.6	ks_quality_p_value=0.984955	log10_base_likelihood=-31.0288	log10_qual_likelihood_position_model=9.09227	log10_strand_likelihood_position_model=1.23728	new_cov=10/4	polymorphism_quality=25.8	quality=25.8	quality_position_model=7.02153e-23	ref_cov=101/107	tot_cov=111/112
RA	2632	.	NC_007779	3451772	0	T	G	bias_e_value=2003930	bias_p_value=0.431293	fisher_strand_p_value=0.165931	frequency=6.139803e-02	genotype_quality=817.8	ks_quality_p_value=0.893617	log10_base_likelihood=-44.3636	log10_qual_likelihood_position_model=5.88895	log10_strand_likelihood_position_model=1.23662	new_cov=10/4	polymorphism_quality=39.3	quality=39.3	quality_position_model=1.52082e-39	ref_cov=104/110	tot_cov=114/114
RA	2633	.	NC_007779	3451773	0	C	G	bias_e_value=1965960	bias_p_value=0.423121	fisher_strand_p_value=0.16617	frequency=6.057596e-02	genotype_quality=895.3	ks_quality_p_value=0.866757	log10_base_likelihood=-39.3002	log10_qual_likelihood_position_model=6.21347	log10_strand_likelihood_position_model=1.22441	new_cov=10/4	polymorphism_quality=34.2	quality=34.2	quality_position_model=3.90149e-34	ref_cov=106/111	tot_cov=116/115
RA	2634	.	NC_007779	3451779	0	G	T	bias_e_value=1401840	bias_p_value=0.301708	fisher_strand_p_value=0.094777	frequency=5.852509e-02	genotype_quality=937.7	ks_quality_p_value=0.927763	log10_base_likelihood=-37.3407	log10_qual_likelihood_position_model=6.63477	log10_strand_likelihood_position_model=1.42153	new_cov=10/4	polymorphism_quality=32.2	quality=32.2	quality_position_model=1.53895e-31	ref_cov=102/123	reject=SURROUNDING_HOMOPOLYMER	tot_cov=112/127
RA	2635	.	NC_007779	3451783	0	A	G	bias_e_value=1270070	bias_p_value=0.273348	fisher_strand_p_value=0.0946573	frequency=5.896950e-02	genotype_quality=793.4	ks_quality_p_value=0.809032	log10_base_likelihood=-32.489	log10_qual_likelihood_position_model=7.83686	log10_strand_likelihood_position_model=1.42351	new_cov=10/4	polymorphism_quality=27.3	quality=27.3	quality_position_model=1.96106e-25	ref_cov=101/122	tot_cov=111/126
RA	2636	.	NC_007779	3451788	0	T	A	bias_e_value=1043370	bias_p_value=0.224559	fisher_strand_p_value=0.0586165	frequency=5.750322e-02	genotype_quality=884.3	ks_quality_p_value=0.997972	log10_base_likelihood=-32.1715	log10_qual_likelihood_position_model=10.3181	log10_strand_likelihood_position_model=1.45847	new_cov=10/4	polymorphism_quality=27.0	quality=27.0	quality_position_model=1.42513e-22	ref_cov=102/126	tot_cov=112/130
RA	2637	.	NC_007779	3451792	0	A	G	bias_e_value=1702550	bias_p_value=0.366429	fisher_strand_p_value=0.118659	frequency=4.594231e-02	genotype_quality=816.3	ks_quality_p_value=0.97973	log10_base_likelihood=-23.0484	log10_qual_likelihood_position_model=7.34351	log10_strand_likelihood_position_model=1.28517	new_cov=8/3	polymorphism_quality=17.8	quality=17.8	quality_position_model=1.59436e-16	ref_cov=101/123	tot_cov=109/130
RA	2638	.	NC_007779	3451795	0	A	G	bias_e_value=2542530	bias_p_value=0.547212	fisher_strand_p_value=0.222731	frequency=4.494190e-02	genotype_quality=879.0	ks_quality_p_value=0.970357	log10_base_likelihood=-25.0464	log10_qual_likelihood_position_model=4.70134	log10_strand_likelihood_position_model=0.980842	new_cov=7/4	polymorphism_quality=19.8	quality=19.8	quality_position_model=1.56906e-21	ref_cov=101/132	tot_cov=108/136
RA	2639	.	NC_007779	3451799	0	T	A	bias_e_value=2900930	bias_p_value=0.624348	fisher_strand_p_value=0.294699	frequency=3.176022e-02	genotype_quality=938.8	ks_quality_p_value=0.918337	log10_base_likelihood=-19.3382	log10_qual_likelihood_position_model=4.67742	log10_strand_likelihood_position_model=0.818688	new_cov=5/3	polymorphism_quality=14.0	quality=14.0	quality_position_model=6.14959e-16	ref_cov=102/139	tot_cov=107/142
RA	2640	.	NC_007779	3453367	0	A	C	bias_e_value=469095	bias_p_value=0.10096	fisher_strand_p_value=0.0591251	frequency=1.558018e-02	genotype_quality=1001.1	ks_quality_p_value=0.350077	log10_base_likelihood=-10.2075	log10_qual_likelihood_position_model=3.83988	log10_strand_likelihood_position_model=1.22823	new_cov=4/0	polymorphism_quality=4.8	quality=4.8	quality_position_model=4.97201e-07	ref_cov=123/129	reject=POLYMORPHISM_STRAND	tot_cov=127/130
RA	2641	.	NC_007779	3453370	0	G	A	bias_e_value=1374970	bias_p_value=0.295927	fisher_strand_p_value=0.122113	frequency=1.561451e-02	genotype_quality=1012.6	ks_quality_p_value=0.700709	log10_base_likelihood=-6.08977	log10_qual_likelihood_position_model=3.9911	log10_strand_likelihood_position_model=1.19376	new_cov=4/0	polymorphism_quality=0.5	quality=0.5	quality_position_model=0.0182773	ref_cov=123/124	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=127/124
RA	2642	.	NC_007779	3453379	0	T	C	bias_e_value=74366.3	bias_p_value=0.0160054	fisher_strand_p_value=0.173843	frequency=3.538322e-02	genotype_quality=925.2	ks_quality_p_value=0.0129781	log10_base_likelihood=-21.7497	log10_qual_likelihood_position_model=6.05976	log10_strand_likelihood_position_model=1.09859	new_cov=7/2	polymorphism_quality=16.5	quality=16.5	quality_position_model=1.06774e-16	ref_cov=124/121	tot_cov=131/123
RA	2643	.	NC_007779	3453399	0	A	G	bias_e_value=128978	bias_p_value=0.0277592	fisher_strand_p_value=0.171923	frequency=3.565979e-02	genotype_quality=919.9	ks_quality_p_value=0.0250409	log10_base_likelihood=-22.0213	log10_qual_likelihood_position_model=4.83398	log10_strand_likelihood_position_model=1.14966	new_cov=7/2	polymorphism_quality=16.8	quality=16.8	quality_position_model=3.64909e-18	ref_cov=120/123	tot_cov=127/125
RA	2644	.	NC_007779	3453400	0	T	G	bias_e_value=204388	bias_p_value=0.0439892	fisher_strand_p_value=0.333866	frequency=3.736973e-02	genotype_quality=961.5	ks_quality_p_value=0.0223373	log10_base_likelihood=-28.5621	log10_qual_likelihood_position_model=6.65803	log10_strand_likelihood_position_model=0.929534	new_cov=7/3	polymorphism_quality=23.4	quality=23.4	quality_position_model=3.70113e-23	ref_cov=120/123	tot_cov=127/126
RA	2645	.	NC_007779	3453409	0	G	A	bias_e_value=828904	bias_p_value=0.1784	fisher_strand_p_value=0.171669	frequency=3.603554e-02	genotype_quality=936.0	ks_quality_p_value=0.250664	log10_base_likelihood=-17.3758	log10_qual_likelihood_position_model=6.03245	log10_strand_likelihood_position_model=1.15859	new_cov=7/2	polymorphism_quality=12.1	quality=12.1	quality_position_model=3.24007e-12	ref_cov=117/121	tot_cov=124/123
RA	2646	.	NC_007779	3453415	0	A	G	bias_e_value=1229930	bias_p_value=0.264709	fisher_strand_p_value=0.101265	frequency=3.480816e-02	genotype_quality=949.1	ks_quality_p_value=0.723322	log10_base_likelihood=-20.4787	log10_qual_likelihood_position_model=4.4887	log10_strand_likelihood_position_model=1.18449	new_cov=7/2	polymorphism_quality=15.2	quality=15.2	quality_position_model=6.47476e-17	ref_cov=121/128	tot_cov=128/130
RA	2647	.	NC_007779	3453421	0	T	C	bias_e_value=2200640	bias_p_value=0.47363	fisher_strand_p_value=0.17261	frequency=3.544903e-02	genotype_quality=938.7	ks_quality_p_value=0.992737	log10_base_likelihood=-19.5605	log10_qual_likelihood_position_model=4.91947	log10_strand_likelihood_position_model=1.12374	new_cov=7/2	polymorphism_quality=14.3	quality=14.3	quality_position_model=1.31417e-15	ref_cov=122/122	tot_cov=129/124
RA	2648	.	NC_007779	3453424	0	C	G	bias_e_value=2531790	bias_p_value=0.544901	fisher_strand_p_value=0.214691	frequency=3.855991e-02	genotype_quality=1047.9	ks_quality_p_value=0.999687	log10_base_likelihood=-25.639	log10_qual_likelihood_position_model=7.7873	log10_strand_likelihood_position_model=0.950596	new_cov=7/3	polymorphism_quality=20.4	quality=20.4	quality_position_model=4.87107e-19	ref_cov=121/127	tot_cov=128/130
RA	2649	.	NC_007779	3453433	0	G	A	bias_e_value=2344180	bias_p_value=0.504523	fisher_strand_p_value=0.216167	frequency=3.975487e-02	genotype_quality=974.2	ks_quality_p_value=0.876121	log10_base_likelihood=-22.1447	log10_qual_likelihood_position_model=4.99328	log10_strand_likelihood_position_model=0.943881	new_cov=7/3	polymorphism_quality=16.9	quality=16.9	quality_position_model=2.45509e-18	ref_cov=118/123	tot_cov=125/126
RA	2650	.	NC_007779	3453438	0	G	T	bias_e_value=3237540	bias_p_value=0.696795	fisher_strand_p_value=0.333707	frequency=4.057312e-02	genotype_quality=999.7	ks_quality_p_value=0.991425	log10_base_likelihood=-26.1469	log10_qual_likelihood_position_model=4.85864	log10_strand_likelihood_position_model=0.922274	new_cov=7/3	polymorphism_quality=20.9	quality=20.9	quality_position_model=1.52457e-22	ref_cov=117/119	tot_cov=124/122
RA	2651	.	NC_007779	3453441	0	A	C	bias_e_value=3232600	bias_p_value=0.695732	fisher_strand_p_value=0.333868	frequency=3.997231e-02	genotype_quality=939.7	ks_quality_p_value=0.988072	log10_base_likelihood=-28.4496	log10_qual_likelihood_position_model=5.27482	log10_strand_likelihood_position_model=0.922416	new_cov=7/3	polymorphism_quality=23.2	quality=23.2	quality_position_model=1.89632e-24	ref_cov=119/121	tot_cov=126/124
RA	2652	.	NC_007779	3453442	0	C	A	bias_e_value=3215910	bias_p_value=0.69214	fisher_strand_p_value=0.333705	frequency=3.988075e-02	genotype_quality=993.3	ks_quality_p_value=0.978893	log10_base_likelihood=-21.2821	log10_qual_likelihood_position_model=5.8206	log10_strand_likelihood_position_model=0.936689	new_cov=7/3	polymorphism_quality=16.0	quality=16.0	quality_position_model=1.24729e-16	ref_cov=118/122	tot_cov=125/125
RA	2653	.	NC_007779	3453444	0	C	T	bias_e_value=3144690	bias_p_value=0.676812	fisher_strand_p_value=0.334358	frequency=3.982925e-02	genotype_quality=939.2	ks_quality_p_value=0.936755	log10_base_likelihood=-20.4542	log10_qual_likelihood_position_model=6.36286	log10_strand_likelihood_position_model=0.90843	new_cov=7/3	polymorphism_quality=15.2	quality=15.2	quality_position_model=2.87283e-15	ref_cov=120/120	tot_cov=127/123
RA	2654	.	NC_007779	3453446	0	C	G	bias_e_value=2947580	bias_p_value=0.634388	fisher_strand_p_value=0.335232	frequency=3.961754e-02	genotype_quality=1007.0	ks_quality_p_value=0.830467	log10_base_likelihood=-27.3014	log10_qual_likelihood_position_model=5.36941	log10_strand_likelihood_position_model=0.895017	new_cov=7/3	polymorphism_quality=22.1	quality=22.1	quality_position_model=3.20085e-23	ref_cov=122/120	tot_cov=129/123
RA	2655	.	NC_007779	3453448	0	G	C	bias_e_value=3258990	bias_p_value=0.701411	fisher_strand_p_value=0.335455	frequency=3.818703e-02	genotype_quality=1036.7	ks_quality_p_value=0.99877	log10_base_likelihood=-21.8967	log10_qual_likelihood_position_model=8.54535	log10_strand_likelihood_position_model=0.896125	new_cov=7/3	polymorphism_quality=16.6	quality=16.6	quality_position_model=1.57736e-14	ref_cov=126/124	tot_cov=133/127
RA	2656	.	NC_007779	3453454	0	T	G	bias_e_value=2409290	bias_p_value=0.518536	fisher_strand_p_value=0.334323	frequency=3.816509e-02	genotype_quality=978.4	ks_quality_p_value=0.592016	log10_base_likelihood=-29.9073	log10_qual_likelihood_position_model=4.82776	log10_strand_likelihood_position_model=0.922815	new_cov=7/3	polymorphism_quality=24.7	quality=24.7	quality_position_model=2.27006e-26	ref_cov=125/127	tot_cov=132/130
RA	2657	.	NC_007779	3453459	0	C	T	bias_e_value=4432970	bias_p_value=0.954079	fisher_strand_p_value=0.722201	frequency=3.222752e-02	genotype_quality=967.9	ks_quality_p_value=0.986807	log10_base_likelihood=-15.5497	log10_qual_likelihood_position_model=5.26205	log10_strand_likelihood_position_model=0.645941	new_cov=5/3	polymorphism_quality=10.2	quality=10.2	quality_position_model=1.16153e-11	ref_cov=120/119	tot_cov=125/122
RA	2658	.	NC_007779	3453814	0	T	G	bias_e_value=4518120	bias_p_value=0.972407	fisher_strand_p_value=1	frequency=3.785706e-02	genotype_quality=871.3	ks_quality_p_value=0.774472	log10_base_likelihood=-25.3347	log10_qual_likelihood_position_model=6.36181	log10_strand_likelihood_position_model=0.584579	new_cov=5/4	polymorphism_quality=20.1	quality=20.1	quality_position_model=1.52243e-20	ref_cov=117/107	tot_cov=122/111
RA	2659	.	NC_007779	3453829	0	G	A	bias_e_value=4467810	bias_p_value=0.961579	fisher_strand_p_value=0.788073	frequency=5.700827e-02	genotype_quality=888.0	ks_quality_p_value=0.933826	log10_base_likelihood=-28.6238	log10_qual_likelihood_position_model=8.50091	log10_strand_likelihood_position_model=0.690413	new_cov=8/6	polymorphism_quality=23.4	quality=23.4	quality_position_model=1.33857e-21	ref_cov=120/110	tot_cov=128/116
RA	2660	.	NC_007779	3453832	0	T	C	bias_e_value=2338730	bias_p_value=0.503351	fisher_strand_p_value=0.786369	frequency=5.834103e-02	genotype_quality=831.2	ks_quality_p_value=0.239945	log10_base_likelihood=-35.8136	log10_qual_likelihood_position_model=5.00231	log10_strand_likelihood_position_model=0.697569	new_cov=8/6	polymorphism_quality=30.7	quality=30.7	quality_position_model=2.24866e-32	ref_cov=116/109	tot_cov=125/115
RA	2661	.	NC_007779	3453835	0	G	A	bias_e_value=4068640	bias_p_value=0.875668	fisher_strand_p_value=0.786875	frequency=5.974054e-02	genotype_quality=859.8	ks_quality_p_value=0.692341	log10_base_likelihood=-33.4131	log10_qual_likelihood_position_model=6.42182	log10_strand_likelihood_position_model=0.693965	new_cov=8/6	polymorphism_quality=28.2	quality=28.2	quality_position_model=1.57514e-28	ref_cov=114/106	tot_cov=122/112
RA	2662	.	NC_007779	3453838	0	G	C	bias_e_value=3324400	bias_p_value=0.715489	fisher_strand_p_value=1	frequency=6.426048e-02	genotype_quality=915.8	ks_quality_p_value=0.348148	log10_base_likelihood=-44.2044	log10_qual_likelihood_position_model=6.73517	log10_strand_likelihood_position_model=0.688098	new_cov=8/7	polymorphism_quality=39.1	quality=39.1	quality_position_model=4.38155e-39	ref_cov=110/108	tot_cov=118/115
RA	2663	.	NC_007779	3453847	0	G	C	bias_e_value=2603580	bias_p_value=0.560352	fisher_strand_p_value=0.784552	frequency=6.601334e-02	genotype_quality=819.6	ks_quality_p_value=0.286557	log10_base_likelihood=-42.2971	log10_qual_likelihood_position_model=6.17869	log10_strand_likelihood_position_model=0.70282	new_cov=8/6	polymorphism_quality=37.2	quality=37.2	quality_position_model=1.03583e-37	ref_cov=101/97	tot_cov=109/103
RA	2664	.	NC_007779	3453849	0	T	G	bias_e_value=1471720	bias_p_value=0.316748	fisher_strand_p_value=0.786236	frequency=6.279039e-02	genotype_quality=785.3	ks_quality_p_value=0.11982	log10_base_likelihood=-47.0182	log10_qual_likelihood_position_model=7.32709	log10_strand_likelihood_position_model=0.694952	new_cov=8/6	polymorphism_quality=41.9	quality=41.9	quality_position_model=2.59447e-41	ref_cov=108/101	tot_cov=116/107
RA	2665	.	NC_007779	3453856	0	T	C	bias_e_value=2251870	bias_p_value=0.484655	fisher_strand_p_value=0.786843	frequency=6.244230e-02	genotype_quality=761.3	ks_quality_p_value=0.225802	log10_base_likelihood=-35.5839	log10_qual_likelihood_position_model=5.89162	log10_strand_likelihood_position_model=0.692221	new_cov=8/6	polymorphism_quality=30.4	quality=30.4	quality_position_model=2.97613e-31	ref_cov=109/101	tot_cov=117/107
RA	2666	.	NC_007779	3453862	0	C	G	bias_e_value=3770720	bias_p_value=0.811547	fisher_strand_p_value=0.783737	frequency=6.218767e-02	genotype_quality=881.6	ks_quality_p_value=0.577731	log10_base_likelihood=-40.007	log10_qual_likelihood_position_model=6.81798	log10_strand_likelihood_position_model=0.72301	new_cov=8/6	polymorphism_quality=34.9	quality=34.9	quality_position_model=9.6276e-35	ref_cov=105/106	reject=SURROUNDING_HOMOPOLYMER	tot_cov=113/112
RA	2667	.	NC_007779	3453865	0	A	C	bias_e_value=3783740	bias_p_value=0.814349	fisher_strand_p_value=0.590935	frequency=6.392336e-02	genotype_quality=781.3	ks_quality_p_value=0.77224	log10_base_likelihood=-46.9432	log10_qual_likelihood_position_model=5.55264	log10_strand_likelihood_position_model=0.740025	new_cov=8/6	polymorphism_quality=41.8	quality=41.8	quality_position_model=5.63311e-43	ref_cov=100/105	tot_cov=108/111
RA	2668	.	NC_007779	3453867	0	T	G	bias_e_value=4165780	bias_p_value=0.896573	fisher_strand_p_value=0.587459	frequency=6.632853e-02	genotype_quality=749.7	ks_quality_p_value=0.98928	log10_base_likelihood=-43.8903	log10_qual_likelihood_position_model=8.99362	log10_strand_likelihood_position_model=0.750133	new_cov=8/6	polymorphism_quality=38.8	quality=38.8	quality_position_model=1.95957e-36	ref_cov=95/102	tot_cov=103/108
RA	2669	.	NC_007779	3453868	0	C	A	bias_e_value=4059260	bias_p_value=0.873648	fisher_strand_p_value=0.587459	frequency=6.625557e-02	genotype_quality=831.1	ks_quality_p_value=0.921726	log10_base_likelihood=-34.6308	log10_qual_likelihood_position_model=9.29353	log10_strand_likelihood_position_model=0.750133	new_cov=8/6	polymorphism_quality=29.5	quality=29.5	quality_position_model=8.35329e-27	ref_cov=95/102	tot_cov=103/108
RA	2670	.	NC_007779	3453869	0	T	C	bias_e_value=3646050	bias_p_value=0.784715	fisher_strand_p_value=0.587459	frequency=6.629372e-02	genotype_quality=732.0	ks_quality_p_value=0.715659	log10_base_likelihood=-36.6763	log10_qual_likelihood_position_model=4.77214	log10_strand_likelihood_position_model=0.750133	new_cov=8/6	polymorphism_quality=31.5	quality=31.5	quality_position_model=2.01531e-33	ref_cov=95/102	reject=SURROUNDING_HOMOPOLYMER	tot_cov=103/108
RA	2671	.	NC_007779	3453871	0	A	C	bias_e_value=3401180	bias_p_value=0.732015	fisher_strand_p_value=0.584788	frequency=6.421614e-02	genotype_quality=780.6	ks_quality_p_value=0.622711	log10_base_likelihood=-46.8205	log10_qual_likelihood_position_model=5.7148	log10_strand_likelihood_position_model=0.76498	new_cov=8/6	polymorphism_quality=41.7	quality=41.7	quality_position_model=1.15399e-42	ref_cov=97/107	tot_cov=105/113
RA	2672	.	NC_007779	3453879	0	G	A	bias_e_value=4164920	bias_p_value=0.896389	fisher_strand_p_value=0.583885	frequency=6.176805e-02	genotype_quality=829.4	ks_quality_p_value=0.994754	log10_base_likelihood=-32.9874	log10_qual_likelihood_position_model=5.59297	log10_strand_likelihood_position_model=0.774201	new_cov=8/6	polymorphism_quality=27.8	quality=27.8	quality_position_model=7.44376e-29	ref_cov=100/112	tot_cov=108/118
RA	2673	.	NC_007779	3453895	0	A	G	bias_e_value=3538310	bias_p_value=0.761528	fisher_strand_p_value=0.423509	frequency=6.189966e-02	genotype_quality=784.5	ks_quality_p_value=0.931729	log10_base_likelihood=-36.4903	log10_qual_likelihood_position_model=5.54957	log10_strand_likelihood_position_model=0.80862	new_cov=8/6	polymorphism_quality=31.3	quality=31.3	quality_position_model=2.15479e-32	ref_cov=97/115	tot_cov=105/121
RA	2674	.	NC_007779	3453901	0	A	G	bias_e_value=2119470	bias_p_value=0.45616	fisher_strand_p_value=0.192816	frequency=4.561329e-02	genotype_quality=792.4	ks_quality_p_value=0.838169	log10_base_likelihood=-24.8402	log10_qual_likelihood_position_model=4.549	log10_strand_likelihood_position_model=1.09223	new_cov=7/3	polymorphism_quality=19.6	quality=19.6	quality_position_model=2.30519e-21	ref_cov=94/115	reject=SURROUNDING_HOMOPOLYMER	tot_cov=101/118
RA	2675	.	NC_007779	3460323	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2676	.	NC_007779	3460324	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2677	.	NC_007779	3460325	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2678	.	NC_007779	3460327	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	2679	.	NC_007779	3460328	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2680	.	NC_007779	3460329	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2681	.	NC_007779	3460330	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2682	.	NC_007779	3460331	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2683	.	NC_007779	3460332	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2684	.	NC_007779	3460333	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2685	.	NC_007779	3460335	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2686	.	NC_007779	3460336	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	2687	.	NC_007779	3460339	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/1	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	2688	.	NC_007779	3460341	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2689	.	NC_007779	3460342	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2690	.	NC_007779	3460344	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	2691	.	NC_007779	3460345	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2692	.	NC_007779	3460347	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2693	.	NC_007779	3460348	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/1
RA	2694	.	NC_007779	3460390	0	A	G	bias_e_value=2866680	bias_p_value=0.616977	fisher_strand_p_value=0.605221	frequency=2.303410e-02	genotype_quality=452.2	ks_quality_p_value=0.437919	log10_base_likelihood=-6.68423	log10_qual_likelihood_position_model=2.41624	log10_strand_likelihood_position_model=0.444391	new_cov=1/2	polymorphism_quality=1.2	quality=1.2	quality_position_model=1.17868e-05	ref_cov=67/60	reject=EVALUE,POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=68/62
RA	2695	.	NC_007779	3460411	0	A	G	bias_e_value=2159830	bias_p_value=0.464847	fisher_strand_p_value=0.277908	frequency=4.435253e-02	genotype_quality=604.3	ks_quality_p_value=0.598822	log10_base_likelihood=-18.2552	log10_qual_likelihood_position_model=4.45604	log10_strand_likelihood_position_model=0.971323	new_cov=2/6	polymorphism_quality=12.9	quality=12.9	quality_position_model=6.59358e-15	ref_cov=88/84	tot_cov=90/90
RA	2696	.	NC_007779	3460414	0	C	A	bias_e_value=1901000	bias_p_value=0.40914	fisher_strand_p_value=0.164357	frequency=4.364204e-02	genotype_quality=630.8	ks_quality_p_value=0.832985	log10_base_likelihood=-20.6911	log10_qual_likelihood_position_model=3.59833	log10_strand_likelihood_position_model=1.00125	new_cov=2/6	polymorphism_quality=15.4	quality=15.4	quality_position_model=3.21821e-18	ref_cov=91/84	tot_cov=93/90
RA	2697	.	NC_007779	3460417	0	A	G	bias_e_value=1115060	bias_p_value=0.239987	fisher_strand_p_value=0.166624	frequency=4.342556e-02	genotype_quality=620.5	ks_quality_p_value=0.384227	log10_base_likelihood=-19.3483	log10_qual_likelihood_position_model=3.31468	log10_strand_likelihood_position_model=0.990935	new_cov=2/6	polymorphism_quality=14.1	quality=14.1	quality_position_model=3.72127e-17	ref_cov=91/85	tot_cov=93/91
RA	2698	.	NC_007779	3460420	0	A	G	bias_e_value=2093760	bias_p_value=0.450626	fisher_strand_p_value=0.166624	frequency=4.339409e-02	genotype_quality=614.2	ks_quality_p_value=0.951794	log10_base_likelihood=-18.372	log10_qual_likelihood_position_model=4.19929	log10_strand_likelihood_position_model=0.990935	new_cov=2/6	polymorphism_quality=13.1	quality=13.1	quality_position_model=2.88044e-15	ref_cov=91/85	tot_cov=93/91
RA	2699	.	NC_007779	3460423	0	T	A	bias_e_value=2312380	bias_p_value=0.497678	fisher_strand_p_value=0.273976	frequency=3.586769e-02	genotype_quality=658.1	ks_quality_p_value=0.676344	log10_base_likelihood=-18.6468	log10_qual_likelihood_position_model=2.75555	log10_strand_likelihood_position_model=0.80847	new_cov=2/5	polymorphism_quality=13.3	quality=13.3	quality_position_model=3.38877e-17	ref_cov=97/91	tot_cov=99/96
RA	2700	.	NC_007779	3460429	0	G	A	bias_e_value=2491680	bias_p_value=0.536269	fisher_strand_p_value=0.270193	frequency=3.434277e-02	genotype_quality=698.3	ks_quality_p_value=0.773748	log10_base_likelihood=-14.4498	log10_qual_likelihood_position_model=3.99336	log10_strand_likelihood_position_model=0.82134	new_cov=2/5	polymorphism_quality=9.1	quality=9.1	quality_position_model=1.17974e-11	ref_cov=102/94	tot_cov=104/99
RA	2701	.	NC_007779	3460447	0	C	A	bias_e_value=3334290	bias_p_value=0.717619	fisher_strand_p_value=0.499416	frequency=3.341389e-02	genotype_quality=830.3	ks_quality_p_value=0.701163	log10_base_likelihood=-19.8615	log10_qual_likelihood_position_model=2.74001	log10_strand_likelihood_position_model=0.660194	new_cov=3/5	polymorphism_quality=14.6	quality=14.6	quality_position_model=1.35839e-18	ref_cov=117/114	tot_cov=120/119
RA	2702	.	NC_007779	3460468	0	T	C	bias_e_value=3763690	bias_p_value=0.810034	fisher_strand_p_value=0.504573	frequency=5.320930e-02	genotype_quality=562.1	ks_quality_p_value=0.893597	log10_base_likelihood=-23.1888	log10_qual_likelihood_position_model=3.59737	log10_strand_likelihood_position_model=0.704833	new_cov=3/6	polymorphism_quality=17.9	quality=17.9	quality_position_model=4.7706e-21	ref_cov=76/84	tot_cov=79/90
RA	2703	.	NC_007779	3460471	0	A	G	bias_e_value=3551520	bias_p_value=0.764371	fisher_strand_p_value=0.501672	frequency=5.516005e-02	genotype_quality=538.2	ks_quality_p_value=0.792683	log10_base_likelihood=-22.5893	log10_qual_likelihood_position_model=3.48612	log10_strand_likelihood_position_model=0.71584	new_cov=3/6	polymorphism_quality=17.3	quality=17.3	quality_position_model=1.52587e-20	ref_cov=74/80	tot_cov=77/86
RA	2704	.	NC_007779	3460473	0	C	T	bias_e_value=2681320	bias_p_value=0.577083	fisher_strand_p_value=0.501674	frequency=5.583239e-02	genotype_quality=547.3	ks_quality_p_value=0.470863	log10_base_likelihood=-21.9358	log10_qual_likelihood_position_model=3.40673	log10_strand_likelihood_position_model=0.715017	new_cov=3/6	polymorphism_quality=16.7	quality=16.7	quality_position_model=5.80137e-20	ref_cov=73/79	tot_cov=76/85
RA	2705	.	NC_007779	3460474	0	A	G	bias_e_value=2457170	bias_p_value=0.528841	fisher_strand_p_value=0.500295	frequency=5.622673e-02	genotype_quality=529.1	ks_quality_p_value=0.408459	log10_base_likelihood=-23.6507	log10_qual_likelihood_position_model=3.72621	log10_strand_likelihood_position_model=0.721827	new_cov=3/6	polymorphism_quality=18.4	quality=18.4	quality_position_model=2.2855e-21	ref_cov=73/78	tot_cov=76/84
RA	2706	.	NC_007779	3460486	0	C	G	bias_e_value=446815	bias_p_value=0.0961652	fisher_strand_p_value=0.441784	frequency=5.983400e-02	genotype_quality=390.5	ks_quality_p_value=0.0440743	log10_base_likelihood=-21.2231	log10_qual_likelihood_position_model=3.84524	log10_strand_likelihood_position_model=0.73346	new_cov=2/5	polymorphism_quality=16.0	quality=16.0	quality_position_model=8.86281e-19	ref_cov=54/56	tot_cov=56/61
RA	2707	.	NC_007779	3460491	1	.	A	bias_e_value=76210.1	bias_p_value=0.0164022	fisher_strand_p_value=0.243127	frequency=2.830219e-02	genotype_quality=374.4	ks_quality_p_value=0.00954821	log10_base_likelihood=-13.4954	log10_qual_likelihood_position_model=2.72428	log10_strand_likelihood_position_model=0.890856	new_cov=0/3	polymorphism_quality=8.1	quality=8.1	quality_position_model=6.62794e-12	ref_cov=52/51	reject=POLYMORPHISM_STRAND	tot_cov=52/54
RA	2708	.	NC_007779	3460492	0	G	A	bias_e_value=4279090	bias_p_value=0.920962	fisher_strand_p_value=1	frequency=3.767776e-02	genotype_quality=352.7	ks_quality_p_value=0.629739	log10_base_likelihood=-9.04297	log10_qual_likelihood_position_model=1.81578	log10_strand_likelihood_position_model=0.417971	new_cov=2/2	polymorphism_quality=3.6	quality=3.6	quality_position_model=9.32054e-09	ref_cov=50/52	tot_cov=52/54
RA	2709	.	NC_007779	3460493	0	C	G	bias_e_value=4213130	bias_p_value=0.906764	fisher_strand_p_value=1	frequency=3.808403e-02	genotype_quality=350.5	ks_quality_p_value=0.600527	log10_base_likelihood=-11.3891	log10_qual_likelihood_position_model=1.61951	log10_strand_likelihood_position_model=0.418299	new_cov=2/2	polymorphism_quality=6.0	quality=6.0	quality_position_model=2.30046e-11	ref_cov=49/52	tot_cov=51/54
RA	2710	.	NC_007779	3460494	0	A	C	bias_e_value=4522320	bias_p_value=0.97331	fisher_strand_p_value=1	frequency=4.078388e-02	genotype_quality=330.9	ks_quality_p_value=0.77804	log10_base_likelihood=-12.8587	log10_qual_likelihood_position_model=2.23947	log10_strand_likelihood_position_model=0.418446	new_cov=2/2	polymorphism_quality=7.5	quality=7.5	quality_position_model=3.12032e-12	ref_cov=49/45	tot_cov=51/51
RA	2711	.	NC_007779	3460498	0	T	G	bias_e_value=655593	bias_p_value=0.141099	fisher_strand_p_value=0.262553	frequency=7.450724e-02	genotype_quality=303.9	ks_quality_p_value=0.120725	log10_base_likelihood=-24.1623	log10_qual_likelihood_position_model=3.68155	log10_strand_likelihood_position_model=0.820856	new_cov=2/5	polymorphism_quality=18.9	quality=18.9	quality_position_model=7.88392e-22	ref_cov=46/41	tot_cov=48/46
RA	2712	.	NC_007779	3460504	0	T	A	bias_e_value=640833	bias_p_value=0.137922	fisher_strand_p_value=0.363921	frequency=6.326580e-02	genotype_quality=255.4	ks_quality_p_value=0.0845794	log10_base_likelihood=-14.1144	log10_qual_likelihood_position_model=4.68266	log10_strand_likelihood_position_model=0.735758	new_cov=1/4	polymorphism_quality=8.8	quality=8.8	quality_position_model=1.07701e-10	ref_cov=36/38	reject=POLYMORPHISM_STRAND	tot_cov=37/42
RA	2713	.	NC_007779	3475527	0	T	G	bias_e_value=3.043e-22	bias_p_value=6.54926e-29	fisher_strand_p_value=9.33658e-31	frequency=1.880965e-01	genotype_quality=504.1	ks_quality_p_value=1	log10_base_likelihood=-31.7444	log10_qual_likelihood_position_model=41.2207	log10_strand_likelihood_position_model=30.0298	new_cov=56/0	polymorphism_quality=26.6	quality=26.6	quality_position_model=Inf	ref_cov=28/130	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=84/130
RA	2714	.	NC_007779	3475533	0	C	T	bias_e_value=2.04606e-10	bias_p_value=4.4036e-17	fisher_strand_p_value=1.03837e-18	frequency=1.568637e-01	genotype_quality=652.2	ks_quality_p_value=1	log10_base_likelihood=-40.7275	log10_qual_likelihood_position_model=39.69	log10_strand_likelihood_position_model=17.9836	new_cov=37/0	polymorphism_quality=35.6	quality=35.6	quality_position_model=Inf	ref_cov=50/140	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=87/140
RA	2715	.	NC_007779	3475539	0	G	T	bias_e_value=1933.19	bias_p_value=0.000416068	fisher_strand_p_value=3.71468e-05	frequency=4.778242e-02	genotype_quality=676.4	ks_quality_p_value=1	log10_base_likelihood=-10.9488	log10_qual_likelihood_position_model=10.1342	log10_strand_likelihood_position_model=4.43008	new_cov=9/0	polymorphism_quality=5.5	quality=5.5	quality_position_model=Inf	ref_cov=53/122	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=62/122
RA	2716	.	NC_007779	3481746	0	T	G	bias_e_value=0.171794	bias_p_value=3.69741e-08	fisher_strand_p_value=1.74691e-09	frequency=6.931257e-02	genotype_quality=618.0	ks_quality_p_value=1	log10_base_likelihood=-7.4393	log10_qual_likelihood_position_model=19.5127	log10_strand_likelihood_position_model=8.75773	new_cov=21/0	polymorphism_quality=1.9	quality=1.9	quality_position_model=Inf	ref_cov=65/122	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=86/123
RA	2717	.	NC_007779	3484372	0	A	C	bias_e_value=1.56384e-05	bias_p_value=3.36576e-12	fisher_strand_p_value=1.09114e-13	frequency=1.127615e-01	genotype_quality=494.1	ks_quality_p_value=1	log10_base_likelihood=-12.8684	log10_qual_likelihood_position_model=28.8217	log10_strand_likelihood_position_model=12.9751	new_cov=0/41	polymorphism_quality=7.5	quality=7.5	quality_position_model=Inf	ref_cov=92/66	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=92/107
RA	2718	.	NC_007779	3486216	0	T	G	bias_e_value=0.0088138	bias_p_value=1.89694e-09	fisher_strand_p_value=7.81522e-11	frequency=4.649401e-02	genotype_quality=749.8	ks_quality_p_value=1	log10_base_likelihood=-6.1511	log10_qual_likelihood_position_model=32.0426	log10_strand_likelihood_position_model=10.1071	new_cov=26/0	polymorphism_quality=0.6	quality=0.6	quality_position_model=Inf	ref_cov=85/142	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=111/142
RA	2719	.	NC_007779	3499066	0	A	C	bias_e_value=0.0322599	bias_p_value=6.94308e-09	fisher_strand_p_value=3.02961e-10	frequency=6.163692e-02	genotype_quality=577.4	ks_quality_p_value=1	log10_base_likelihood=-10.9523	log10_qual_likelihood_position_model=17.5915	log10_strand_likelihood_position_model=9.51861	new_cov=0/12	polymorphism_quality=5.5	quality=5.5	quality_position_model=Inf	ref_cov=142/21	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=142/33
RA	2720	.	NC_007779	3520391	0	C	G	bias_e_value=2.49965e-05	bias_p_value=5.37983e-12	fisher_strand_p_value=1.77192e-13	frequency=1.021848e-01	genotype_quality=455.0	ks_quality_p_value=1	log10_base_likelihood=-24.9508	log10_qual_likelihood_position_model=12.0512	log10_strand_likelihood_position_model=12.7516	new_cov=13/0	polymorphism_quality=19.7	quality=19.7	quality_position_model=0.228445	ref_cov=6/106	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=19/106
RA	2721	.	NC_007779	3543542	0	G	T	bias_e_value=31.7973	bias_p_value=6.84354e-06	fisher_strand_p_value=4.37505e-07	frequency=8.125973e-02	genotype_quality=587.2	ks_quality_p_value=1	log10_base_likelihood=-16.3339	log10_qual_likelihood_position_model=14.0398	log10_strand_likelihood_position_model=6.35902	new_cov=0/18	polymorphism_quality=11.0	quality=11.0	quality_position_model=Inf	ref_cov=97/68	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=97/86
RA	2722	.	NC_007779	3543547	0	A	C	bias_e_value=1.35745e-21	bias_p_value=2.92155e-28	fisher_strand_p_value=4.25702e-30	frequency=3.220048e-01	genotype_quality=374.6	ks_quality_p_value=1	log10_base_likelihood=-83.9535	log10_qual_likelihood_position_model=53.8014	log10_strand_likelihood_position_model=29.4608	new_cov=0/84	polymorphism_quality=79.0	quality=79.0	quality_position_model=0.0335722	ref_cov=101/44	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=101/129
RA	2723	.	NC_007779	3583865	0	C	A	bias_e_value=13.8996	bias_p_value=2.99153e-06	fisher_strand_p_value=1.81035e-07	frequency=4.613209e-02	genotype_quality=833.6	ks_quality_p_value=1	log10_base_likelihood=-7.96246	log10_qual_likelihood_position_model=16.7179	log10_strand_likelihood_position_model=6.74224	new_cov=17/0	polymorphism_quality=2.5	quality=2.5	quality_position_model=Inf	ref_cov=87/143	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=104/143
RA	2724	.	NC_007779	3586831	1	.	T	bias_e_value=4586760	bias_p_value=0.987179	fisher_strand_p_value=1	frequency=7.662773e-03	genotype_quality=1286.2	ks_quality_p_value=0.8442	log10_base_likelihood=-8.11625	log10_qual_likelihood_position_model=1.22609	log10_strand_likelihood_position_model=0.299522	new_cov=1/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=1.56573e-08	ref_cov=127/132	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=128/133
RA	2725	.	NC_007779	3603950	0	A	C	bias_e_value=4.06376e-07	bias_p_value=8.74617e-14	fisher_strand_p_value=2.52693e-15	frequency=1.145692e-01	genotype_quality=546.9	ks_quality_p_value=1	log10_base_likelihood=-15.7968	log10_qual_likelihood_position_model=36.6708	log10_strand_likelihood_position_model=14.5974	new_cov=0/36	polymorphism_quality=10.5	quality=10.5	quality_position_model=Inf	ref_cov=115/57	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=116/93
RA	2726	.	NC_007779	3609441	0	T	G	bias_e_value=1.90622e-05	bias_p_value=4.10263e-12	fisher_strand_p_value=1.3389e-13	frequency=7.856798e-02	genotype_quality=508.6	ks_quality_p_value=1	log10_base_likelihood=-6.71814	log10_qual_likelihood_position_model=24.2975	log10_strand_likelihood_position_model=12.8733	new_cov=33/0	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=54/102	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=87/102
RA	2727	.	NC_007779	3615064	0	C	A	bias_e_value=3965.37	bias_p_value=0.000853442	fisher_strand_p_value=8.19916e-05	frequency=4.218006e-02	genotype_quality=778.0	ks_quality_p_value=1	log10_base_likelihood=-6.20546	log10_qual_likelihood_position_model=11.9284	log10_strand_likelihood_position_model=4.31212	new_cov=14/0	polymorphism_quality=0.7	quality=0.7	quality_position_model=Inf	ref_cov=104/115	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=118/115
RA	2728	.	NC_007779	3621343	0	T	G	bias_e_value=7215.18	bias_p_value=0.00155288	fisher_strand_p_value=0.000159362	frequency=4.266930e-02	genotype_quality=727.5	ks_quality_p_value=1	log10_base_likelihood=-9.76894	log10_qual_likelihood_position_model=14.9911	log10_strand_likelihood_position_model=3.82292	new_cov=14/0	polymorphism_quality=4.3	quality=4.3	quality_position_model=Inf	ref_cov=108/101	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=122/101
RA	2729	.	NC_007779	3653996	1	.	G	bias_e_value=2953430	bias_p_value=0.635648	fisher_strand_p_value=0.516422	frequency=8.968353e-03	genotype_quality=1061.6	ks_quality_p_value=0.541004	log10_base_likelihood=-8.16638	log10_qual_likelihood_position_model=1.66123	log10_strand_likelihood_position_model=0.450232	new_cov=2/0	polymorphism_quality=2.7	quality=2.7	quality_position_model=5.59444e-08	ref_cov=131/90	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=133/90
RA	2730	.	NC_007779	3654011	0	A	C	bias_e_value=0.174091	bias_p_value=3.74686e-08	fisher_strand_p_value=1.77144e-09	frequency=6.110525e-02	genotype_quality=825.4	ks_quality_p_value=1	log10_base_likelihood=-13.2383	log10_qual_likelihood_position_model=22.8786	log10_strand_likelihood_position_model=8.75167	new_cov=0/24	polymorphism_quality=7.9	quality=7.9	quality_position_model=Inf	ref_cov=141/95	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=141/121
RA	2731	.	NC_007779	3662279	0	A	C	bias_e_value=0.000148434	bias_p_value=3.19465e-11	fisher_strand_p_value=1.12024e-12	frequency=7.169724e-02	genotype_quality=592.9	ks_quality_p_value=1	log10_base_likelihood=-8.5597	log10_qual_likelihood_position_model=33.6868	log10_strand_likelihood_position_model=11.9574	new_cov=1/34	polymorphism_quality=3.1	quality=3.1	quality_position_model=Inf	ref_cov=120/66	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=121/102
RA	2732	.	NC_007779	3673380	0	G	T	bias_e_value=4037.26	bias_p_value=0.000868913	fisher_strand_p_value=8.86773e-05	frequency=4.315090e-02	genotype_quality=756.5	ks_quality_p_value=0.943169	log10_base_likelihood=-7.17592	log10_qual_likelihood_position_model=18.4006	log10_strand_likelihood_position_model=4.18297	new_cov=0/16	polymorphism_quality=1.7	quality=1.7	quality_position_model=Inf	ref_cov=106/120	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=106/136
RA	2733	.	NC_007779	3676780	0	A	C	bias_e_value=8.15884e-05	bias_p_value=1.75597e-11	fisher_strand_p_value=6.02652e-13	frequency=1.047435e-01	genotype_quality=676.7	ks_quality_p_value=1	log10_base_likelihood=-15.9777	log10_qual_likelihood_position_model=25.9483	log10_strand_likelihood_position_model=12.2199	new_cov=0/33	polymorphism_quality=10.6	quality=10.6	quality_position_model=Inf	ref_cov=131/81	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=131/114
RA	2734	.	NC_007779	3677217	0	T	G	bias_e_value=726315	bias_p_value=0.15632	fisher_strand_p_value=0.036195	frequency=5.618906e-02	genotype_quality=406.7	ks_quality_p_value=1	log10_base_likelihood=-6.98065	log10_qual_likelihood_position_model=12.3518	log10_strand_likelihood_position_model=1.53917	new_cov=10/5	polymorphism_quality=1.5	quality=1.5	quality_position_model=Inf	ref_cov=115/15	reject=EVALUE,SURROUNDING_HOMOPOLYMER	tot_cov=125/20
RA	2735	.	NC_007779	3682560	0	T	A	bias_e_value=3907200	bias_p_value=0.840921	fisher_strand_p_value=1	frequency=7.694197e-02	genotype_quality=931.9	ks_quality_p_value=0.491939	log10_base_likelihood=-59.3022	log10_qual_likelihood_position_model=8.95309	log10_strand_likelihood_position_model=0.74663	new_cov=10/10	polymorphism_quality=54.3	quality=54.3	quality_position_model=5.7015e-52	ref_cov=125/113	tot_cov=135/123
RA	2736	.	NC_007779	3682562	0	C	G	bias_e_value=4517350	bias_p_value=0.972241	fisher_strand_p_value=1	frequency=7.685518e-02	genotype_quality=993.2	ks_quality_p_value=0.773824	log10_base_likelihood=-59.6325	log10_qual_likelihood_position_model=7.08302	log10_strand_likelihood_position_model=0.73776	new_cov=10/10	polymorphism_quality=54.6	quality=54.6	quality_position_model=3.44643e-54	ref_cov=122/118	reject=SURROUNDING_HOMOPOLYMER	tot_cov=132/128
RA	2737	.	NC_007779	3682571	0	C	G	bias_e_value=4041380	bias_p_value=0.869801	fisher_strand_p_value=1	frequency=7.658195e-02	genotype_quality=991.8	ks_quality_p_value=0.535263	log10_base_likelihood=-59.8259	log10_qual_likelihood_position_model=6.72188	log10_strand_likelihood_position_model=0.737341	new_cov=10/10	polymorphism_quality=54.8	quality=54.8	quality_position_model=9.55242e-55	ref_cov=119/122	tot_cov=129/132
RA	2738	.	NC_007779	3682574	0	C	G	bias_e_value=3136360	bias_p_value=0.675019	fisher_strand_p_value=1	frequency=7.544279e-02	genotype_quality=1000.8	ks_quality_p_value=0.311671	log10_base_likelihood=-60.6695	log10_qual_likelihood_position_model=7.60886	log10_strand_likelihood_position_model=0.737592	new_cov=10/10	polymorphism_quality=55.6	quality=55.6	quality_position_model=1.05664e-54	ref_cov=124/121	reject=SURROUNDING_HOMOPOLYMER	tot_cov=134/131
RA	2739	.	NC_007779	3682577	0	T	C	bias_e_value=4188240	bias_p_value=0.901407	fisher_strand_p_value=1	frequency=7.451773e-02	genotype_quality=890.1	ks_quality_p_value=0.590197	log10_base_likelihood=-50.1446	log10_qual_likelihood_position_model=7.61787	log10_strand_likelihood_position_model=0.737452	new_cov=10/10	polymorphism_quality=45.1	quality=45.1	quality_position_model=4.03701e-44	ref_cov=125/123	tot_cov=135/133
RA	2740	.	NC_007779	3682595	0	T	C	bias_e_value=4645690	bias_p_value=0.999861	fisher_strand_p_value=1	frequency=8.036566e-02	genotype_quality=867.2	ks_quality_p_value=0.983377	log10_base_likelihood=-54.7276	log10_qual_likelihood_position_model=8.41605	log10_strand_likelihood_position_model=0.745702	new_cov=10/11	polymorphism_quality=49.7	quality=49.7	quality_position_model=6.4698e-48	ref_cov=114/126	tot_cov=124/137
RA	2741	.	NC_007779	3682601	0	A	T	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=8.049393e-02	genotype_quality=941.8	ks_quality_p_value=1	log10_base_likelihood=-58.3654	log10_qual_likelihood_position_model=8.42172	log10_strand_likelihood_position_model=0.745668	new_cov=10/11	polymorphism_quality=53.3	quality=53.3	quality_position_model=1.45285e-51	ref_cov=112/125	tot_cov=122/136
RA	2742	.	NC_007779	3682607	0	A	G	bias_e_value=4643040	bias_p_value=0.999291	fisher_strand_p_value=1	frequency=8.627510e-02	genotype_quality=785.9	ks_quality_p_value=0.962569	log10_base_likelihood=-52.4151	log10_qual_likelihood_position_model=9.97302	log10_strand_likelihood_position_model=0.751693	new_cov=10/11	polymorphism_quality=47.3	quality=47.3	quality_position_model=5.07527e-44	ref_cov=101/121	tot_cov=111/132
RA	2743	.	NC_007779	3682613	0	C	A	bias_e_value=4562120	bias_p_value=0.981876	fisher_strand_p_value=0.81832	frequency=8.396721e-02	genotype_quality=900.6	ks_quality_p_value=0.996866	log10_base_likelihood=-50.3825	log10_qual_likelihood_position_model=9.58566	log10_strand_likelihood_position_model=0.751398	new_cov=10/10	polymorphism_quality=45.3	quality=45.3	quality_position_model=2.28589e-42	ref_cov=101/115	tot_cov=111/125
RA	2744	.	NC_007779	3682616	0	G	C	bias_e_value=4646210	bias_p_value=0.999974	fisher_strand_p_value=1	frequency=8.781147e-02	genotype_quality=903.1	ks_quality_p_value=0.992771	log10_base_likelihood=-62.6502	log10_qual_likelihood_position_model=8.3524	log10_strand_likelihood_position_model=0.748931	new_cov=10/11	polymorphism_quality=57.6	quality=57.6	quality_position_model=6.21037e-56	ref_cov=100/118	tot_cov=110/129
RA	2745	.	NC_007779	3682622	0	G	A	bias_e_value=4487150	bias_p_value=0.965741	fisher_strand_p_value=1	frequency=8.669186e-02	genotype_quality=838.3	ks_quality_p_value=0.749929	log10_base_likelihood=-52.9817	log10_qual_likelihood_position_model=6.43166	log10_strand_likelihood_position_model=0.7477	new_cov=10/11	polymorphism_quality=47.9	quality=47.9	quality_position_model=3.74353e-48	ref_cov=102/119	tot_cov=112/130
RA	2746	.	NC_007779	3682628	0	G	A	bias_e_value=4646000	bias_p_value=0.999929	fisher_strand_p_value=1	frequency=8.451509e-02	genotype_quality=852.3	ks_quality_p_value=0.988134	log10_base_likelihood=-50.1397	log10_qual_likelihood_position_model=7.48937	log10_strand_likelihood_position_model=0.750041	new_cov=10/11	polymorphism_quality=45.1	quality=45.1	quality_position_model=3.12238e-44	ref_cov=104/123	tot_cov=114/134
RA	2747	.	NC_007779	3682637	0	A	G	bias_e_value=4270940	bias_p_value=0.919207	fisher_strand_p_value=1	frequency=8.353186e-02	genotype_quality=801.2	ks_quality_p_value=0.625969	log10_base_likelihood=-52.3232	log10_qual_likelihood_position_model=7.90585	log10_strand_likelihood_position_model=0.748814	new_cov=10/11	polymorphism_quality=47.2	quality=47.2	quality_position_model=5.21614e-46	ref_cov=104/122	tot_cov=115/133
RA	2748	.	NC_007779	3682643	0	G	C	bias_e_value=4460630	bias_p_value=0.960033	fisher_strand_p_value=0.789943	frequency=5.953979e-02	genotype_quality=932.0	ks_quality_p_value=0.925302	log10_base_likelihood=-40.0154	log10_qual_likelihood_position_model=7.86945	log10_strand_likelihood_position_model=0.68238	new_cov=7/7	polymorphism_quality=34.9	quality=34.9	quality_position_model=9.83289e-34	ref_cov=102/119	tot_cov=109/126
RA	2749	.	NC_007779	3682646	0	A	G	bias_e_value=4390370	bias_p_value=0.944911	fisher_strand_p_value=0.758532	frequency=4.498386e-02	genotype_quality=880.2	ks_quality_p_value=0.905685	log10_base_likelihood=-25.7482	log10_qual_likelihood_position_model=5.52143	log10_strand_likelihood_position_model=0.691561	new_cov=6/5	polymorphism_quality=20.5	quality=20.5	quality_position_model=1.05387e-21	ref_cov=106/127	tot_cov=112/132
RA	2750	.	NC_007779	3685443	0	C	A	bias_e_value=2729.41	bias_p_value=0.000587433	fisher_strand_p_value=5.42851e-05	frequency=4.507446e-02	genotype_quality=806.2	ks_quality_p_value=1	log10_base_likelihood=-7.11739	log10_qual_likelihood_position_model=14.1455	log10_strand_likelihood_position_model=4.32448	new_cov=17/0	polymorphism_quality=1.6	quality=1.6	quality_position_model=Inf	ref_cov=123/105	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=142/105
RA	2751	.	NC_007779	3686205	0	A	.	bias_e_value=4532440	bias_p_value=0.975487	fisher_strand_p_value=1	frequency=1.394176e-02	genotype_quality=849.9	ks_quality_p_value=0.786913	log10_base_likelihood=-7.95746	log10_qual_likelihood_position_model=2.72949	log10_strand_likelihood_position_model=0.387271	new_cov=2/1	polymorphism_quality=2.5	quality=2.5	quality_position_model=1.01691e-06	ref_cov=116/96	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=118/97
RA	2752	.	NC_007779	3688858	0	A	C	bias_e_value=1.32184e-17	bias_p_value=2.8449e-24	fisher_strand_p_value=4.79755e-26	frequency=1.858377e-01	genotype_quality=451.0	ks_quality_p_value=1	log10_base_likelihood=-38.7892	log10_qual_likelihood_position_model=37.7467	log10_strand_likelihood_position_model=25.319	new_cov=0/43	polymorphism_quality=33.6	quality=33.6	quality_position_model=Inf	ref_cov=120/22	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=120/65
RA	2753	.	NC_007779	3690679	0	A	C	bias_e_value=509415	bias_p_value=0.109638	fisher_strand_p_value=0.0266623	frequency=1.538544e-01	genotype_quality=112.3	ks_quality_p_value=0.86141	log10_base_likelihood=-21.0444	log10_qual_likelihood_position_model=3.2535	log10_strand_likelihood_position_model=1.64075	new_cov=0/6	polymorphism_quality=15.8	quality=15.8	quality_position_model=2.80677e-18	ref_cov=17/16	reject=POLYMORPHISM_STRAND	tot_cov=17/22
RA	2754	.	NC_007779	3690681	0	T	G	bias_e_value=492505	bias_p_value=0.105999	fisher_strand_p_value=0.0242751	frequency=1.470919e-01	genotype_quality=114.9	ks_quality_p_value=0.906613	log10_base_likelihood=-19.1224	log10_qual_likelihood_position_model=3.48378	log10_strand_likelihood_position_model=1.71133	new_cov=0/6	polymorphism_quality=13.8	quality=13.8	quality_position_model=5.03911e-16	ref_cov=18/16	reject=POLYMORPHISM_STRAND	tot_cov=18/22
RA	2755	.	NC_007779	3690684	0	C	G	bias_e_value=404370	bias_p_value=0.0870299	fisher_strand_p_value=0.0243276	frequency=1.089854e-01	genotype_quality=175.2	ks_quality_p_value=0.706499	log10_base_likelihood=-17.3669	log10_qual_likelihood_position_model=4.22773	log10_strand_likelihood_position_model=1.78553	new_cov=0/6	polymorphism_quality=12.1	quality=12.1	quality_position_model=2.08425e-13	ref_cov=26/23	reject=POLYMORPHISM_STRAND	tot_cov=26/29
RA	2756	.	NC_007779	3690685	0	C	G	bias_e_value=531218	bias_p_value=0.114331	fisher_strand_p_value=0.0243276	frequency=1.087666e-01	genotype_quality=176.6	ks_quality_p_value=0.995557	log10_base_likelihood=-16.2616	log10_qual_likelihood_position_model=5.08203	log10_strand_likelihood_position_model=1.78553	new_cov=0/6	polymorphism_quality=10.9	quality=10.9	quality_position_model=2.08029e-11	ref_cov=26/23	reject=POLYMORPHISM_STRAND	tot_cov=26/29
RA	2757	.	NC_007779	3690692	0	C	T	bias_e_value=290289	bias_p_value=0.0624771	fisher_strand_p_value=0.0116438	frequency=7.783604e-02	genotype_quality=256.2	ks_quality_p_value=0.980439	log10_base_likelihood=-14.2753	log10_qual_likelihood_position_model=3.03641	log10_strand_likelihood_position_model=1.9339	new_cov=0/6	polymorphism_quality=8.9	quality=8.9	quality_position_model=2.56542e-11	ref_cov=39/32	reject=POLYMORPHISM_STRAND	tot_cov=39/38
RA	2758	.	NC_007779	3690694	0	T	G	bias_e_value=440047	bias_p_value=0.0947085	fisher_strand_p_value=0.0268878	frequency=6.976795e-02	genotype_quality=287.2	ks_quality_p_value=0.710447	log10_base_likelihood=-19.7657	log10_qual_likelihood_position_model=3.55275	log10_strand_likelihood_position_model=1.76135	new_cov=0/6	polymorphism_quality=14.5	quality=14.5	quality_position_model=1.47995e-16	ref_cov=41/39	reject=POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=41/45
RA	2759	.	NC_007779	3690697	0	T	G	bias_e_value=517326	bias_p_value=0.111341	fisher_strand_p_value=0.0264808	frequency=6.528378e-02	genotype_quality=303.6	ks_quality_p_value=0.884395	log10_base_likelihood=-18.5273	log10_qual_likelihood_position_model=3.78636	log10_strand_likelihood_position_model=1.82223	new_cov=0/6	polymorphism_quality=13.2	quality=13.2	quality_position_model=5.33039e-15	ref_cov=45/41	reject=POLYMORPHISM_STRAND	tot_cov=45/47
RA	2760	.	NC_007779	3690713	0	A	G	bias_e_value=347741	bias_p_value=0.074842	fisher_strand_p_value=0.0143533	frequency=5.027246e-02	genotype_quality=482.1	ks_quality_p_value=0.993054	log10_base_likelihood=-15.6521	log10_qual_likelihood_position_model=4.12067	log10_strand_likelihood_position_model=1.99756	new_cov=0/7	polymorphism_quality=10.3	quality=10.3	quality_position_model=1.49698e-11	ref_cov=65/66	reject=POLYMORPHISM_STRAND	tot_cov=65/74
RA	2761	.	NC_007779	3690719	0	A	C	bias_e_value=335855	bias_p_value=0.072284	fisher_strand_p_value=0.0149164	frequency=4.915142e-02	genotype_quality=486.0	ks_quality_p_value=0.915425	log10_base_likelihood=-15.5775	log10_qual_likelihood_position_model=7.23691	log10_strand_likelihood_position_model=1.95867	new_cov=0/7	polymorphism_quality=10.2	quality=10.2	quality_position_model=2.57046e-08	ref_cov=66/69	reject=POLYMORPHISM_STRAND	tot_cov=66/76
RA	2762	.	NC_007779	3690720	0	G	A	bias_e_value=323029	bias_p_value=0.0695234	fisher_strand_p_value=0.015932	frequency=4.799891e-02	genotype_quality=486.4	ks_quality_p_value=0.816932	log10_base_likelihood=-12.8912	log10_qual_likelihood_position_model=5.69801	log10_strand_likelihood_position_model=1.90107	new_cov=0/7	polymorphism_quality=7.5	quality=7.5	quality_position_model=3.45059e-07	ref_cov=66/72	reject=POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=66/79
RA	2763	.	NC_007779	3690732	0	C	T	bias_e_value=9673.08	bias_p_value=0.00208187	fisher_strand_p_value=0.0169523	frequency=3.542805e-02	genotype_quality=718.4	ks_quality_p_value=0.0130411	log10_base_likelihood=-14.9159	log10_qual_likelihood_position_model=5.18678	log10_strand_likelihood_position_model=1.86668	new_cov=0/7	polymorphism_quality=9.6	quality=9.6	quality_position_model=7.70228e-10	ref_cov=89/101	reject=POLYMORPHISM_STRAND	tot_cov=89/108
RA	2764	.	NC_007779	3690747	0	A	G	bias_e_value=4770.36	bias_p_value=0.00102669	fisher_strand_p_value=0.0153829	frequency=2.975941e-02	genotype_quality=814.4	ks_quality_p_value=0.00654069	log10_base_likelihood=-14.9995	log10_qual_likelihood_position_model=7.013	log10_strand_likelihood_position_model=1.96609	new_cov=0/7	polymorphism_quality=9.7	quality=9.7	quality_position_model=6.07329e-08	ref_cov=110/117	reject=POLYMORPHISM_STRAND	tot_cov=110/124
RA	2765	.	NC_007779	3690756	0	G	C	bias_e_value=18552.9	bias_p_value=0.00399303	fisher_strand_p_value=0.015446	frequency=2.701378e-02	genotype_quality=963.3	ks_quality_p_value=0.0297665	log10_base_likelihood=-19.7857	log10_qual_likelihood_position_model=4.26199	log10_strand_likelihood_position_model=1.96819	new_cov=0/7	polymorphism_quality=14.5	quality=14.5	quality_position_model=1.20178e-15	ref_cov=122/130	reject=POLYMORPHISM_STRAND,SURROUNDING_HOMOPOLYMER	tot_cov=122/137
RA	2766	.	NC_007779	3690757	0	C	T	bias_e_value=226929	bias_p_value=0.0488405	fisher_strand_p_value=0.016081	frequency=2.669716e-02	genotype_quality=963.9	ks_quality_p_value=0.526163	log10_base_likelihood=-13.695	log10_qual_likelihood_position_model=4.7782	log10_strand_likelihood_position_model=1.92453	new_cov=0/7	polymorphism_quality=8.3	quality=8.3	quality_position_model=6.03871e-09	ref_cov=121/133	reject=POLYMORPHISM_STRAND	tot_cov=121/140
RA	2767	.	NC_007779	3701118	0	G	T	bias_e_value=103.993	bias_p_value=2.23817e-05	fisher_strand_p_value=1.55725e-06	frequency=6.931734e-02	genotype_quality=673.6	ks_quality_p_value=1	log10_base_likelihood=-14.2038	log10_qual_likelihood_position_model=13.7335	log10_strand_likelihood_position_model=5.80764	new_cov=0/17	polymorphism_quality=8.8	quality=8.8	quality_position_model=Inf	ref_cov=111/84	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=111/101
RA	2768	.	NC_007779	3717810	0	T	C	bias_e_value=246047	bias_p_value=0.052955	fisher_strand_p_value=1	frequency=4.077435e-02	genotype_quality=909.1	ks_quality_p_value=0.00933251	log10_base_likelihood=-25.1289	log10_qual_likelihood_position_model=6.73969	log10_strand_likelihood_position_model=0.607195	new_cov=6/4	polymorphism_quality=19.9	quality=19.9	quality_position_model=6.25097e-20	ref_cov=131/104	tot_cov=137/108
RA	2769	.	NC_007779	3717816	0	A	G	bias_e_value=3115180	bias_p_value=0.67046	fisher_strand_p_value=1	frequency=4.094696e-02	genotype_quality=882.6	ks_quality_p_value=0.307781	log10_base_likelihood=-25.0298	log10_qual_likelihood_position_model=3.8203	log10_strand_likelihood_position_model=0.611905	new_cov=6/4	polymorphism_quality=19.8	quality=19.8	quality_position_model=8.89479e-23	ref_cov=129/105	tot_cov=135/109
RA	2770	.	NC_007779	3717819	0	T	C	bias_e_value=1097170	bias_p_value=0.236136	fisher_strand_p_value=1	frequency=4.360104e-02	genotype_quality=908.8	ks_quality_p_value=0.062626	log10_base_likelihood=-26.8019	log10_qual_likelihood_position_model=6.99911	log10_strand_likelihood_position_model=0.617601	new_cov=6/5	polymorphism_quality=21.6	quality=21.6	quality_position_model=2.38037e-21	ref_cov=130/111	reject=SURROUNDING_HOMOPOLYMER	tot_cov=136/116
RA	2771	.	NC_007779	3717820	0	C	A	bias_e_value=3768350	bias_p_value=0.811038	fisher_strand_p_value=1	frequency=4.326057e-02	genotype_quality=1024.0	ks_quality_p_value=0.452147	log10_base_likelihood=-25.0722	log10_qual_likelihood_position_model=4.77095	log10_strand_likelihood_position_model=0.617939	new_cov=6/5	polymorphism_quality=19.8	quality=19.8	quality_position_model=7.46582e-22	ref_cov=130/112	tot_cov=136/117
RA	2772	.	NC_007779	3717825	0	G	A	bias_e_value=4620450	bias_p_value=0.994429	fisher_strand_p_value=1	frequency=4.496384e-02	genotype_quality=927.7	ks_quality_p_value=0.896323	log10_base_likelihood=-24.842	log10_qual_likelihood_position_model=4.20208	log10_strand_likelihood_position_model=0.618572	new_cov=6/5	polymorphism_quality=19.6	quality=19.6	quality_position_model=3.39949e-22	ref_cov=124/109	tot_cov=130/114
RA	2773	.	NC_007779	3717826	0	G	A	bias_e_value=4606490	bias_p_value=0.991426	fisher_strand_p_value=1	frequency=4.500294e-02	genotype_quality=936.2	ks_quality_p_value=0.87194	log10_base_likelihood=-25.4606	log10_qual_likelihood_position_model=3.9434	log10_strand_likelihood_position_model=0.618572	new_cov=6/5	polymorphism_quality=20.2	quality=20.2	quality_position_model=4.4158e-23	ref_cov=124/109	tot_cov=130/114
RA	2774	.	NC_007779	3717827	0	G	A	bias_e_value=3378220	bias_p_value=0.727073	fisher_strand_p_value=1	frequency=4.535961e-02	genotype_quality=904.4	ks_quality_p_value=0.359295	log10_base_likelihood=-24.7826	log10_qual_likelihood_position_model=5.02188	log10_strand_likelihood_position_model=0.619626	new_cov=6/5	polymorphism_quality=19.5	quality=19.5	quality_position_model=2.6377e-21	ref_cov=122/109	tot_cov=128/114
RA	2775	.	NC_007779	3717828	0	T	C	bias_e_value=354521	bias_p_value=0.0763012	fisher_strand_p_value=0.772111	frequency=4.511547e-02	genotype_quality=791.2	ks_quality_p_value=0.0189064	log10_base_likelihood=-25.4346	log10_qual_likelihood_position_model=7.71139	log10_strand_likelihood_position_model=0.66955	new_cov=7/5	polymorphism_quality=20.2	quality=20.2	quality_position_model=3.41328e-19	ref_cov=125/115	tot_cov=132/120
RA	2776	.	NC_007779	3717834	0	T	G	bias_e_value=3687920	bias_p_value=0.793726	fisher_strand_p_value=1	frequency=4.225063e-02	genotype_quality=960.5	ks_quality_p_value=0.430972	log10_base_likelihood=-30.5836	log10_qual_likelihood_position_model=7.94764	log10_strand_likelihood_position_model=0.627614	new_cov=6/5	polymorphism_quality=25.4	quality=25.4	quality_position_model=3.34409e-24	ref_cov=126/120	tot_cov=132/125
RA	2777	.	NC_007779	3717837	0	T	G	bias_e_value=391668	bias_p_value=0.0842963	fisher_strand_p_value=1	frequency=3.969097e-02	genotype_quality=992.0	ks_quality_p_value=0.016518	log10_base_likelihood=-31.8873	log10_qual_likelihood_position_model=10.4323	log10_strand_likelihood_position_model=0.628021	new_cov=6/5	polymorphism_quality=26.7	quality=26.7	quality_position_model=5.21693e-23	ref_cov=129/123	tot_cov=135/128
RA	2778	.	NC_007779	3717840	0	G	C	bias_e_value=4383970	bias_p_value=0.943533	fisher_strand_p_value=0.768666	frequency=4.520702e-02	genotype_quality=957.1	ks_quality_p_value=0.889003	log10_base_likelihood=-28.6866	log10_qual_likelihood_position_model=7.53416	log10_strand_likelihood_position_model=0.639488	new_cov=6/5	polymorphism_quality=23.5	quality=23.5	quality_position_model=1.08306e-22	ref_cov=115/117	tot_cov=121/122
RA	2779	.	NC_007779	3717844	0	G	A	bias_e_value=3915200	bias_p_value=0.842644	fisher_strand_p_value=0.767766	frequency=4.440308e-02	genotype_quality=903.9	ks_quality_p_value=0.643915	log10_base_likelihood=-22.5299	log10_qual_likelihood_position_model=7.20997	log10_strand_likelihood_position_model=0.641499	new_cov=6/5	polymorphism_quality=17.3	quality=17.3	quality_position_model=8.71217e-17	ref_cov=115/118	tot_cov=121/123
RA	2780	.	NC_007779	3717858	0	A	C	bias_e_value=4580620	bias_p_value=0.985857	fisher_strand_p_value=1	frequency=4.119301e-02	genotype_quality=983.5	ks_quality_p_value=0.836598	log10_base_likelihood=-31.1161	log10_qual_likelihood_position_model=6.83987	log10_strand_likelihood_position_model=0.625872	new_cov=6/5	polymorphism_quality=25.9	quality=25.9	quality_position_model=7.36087e-26	ref_cov=131/123	tot_cov=138/128
RA	2781	.	NC_007779	3717861	0	C	T	bias_e_value=3300490	bias_p_value=0.710343	fisher_strand_p_value=1	frequency=4.221439e-02	genotype_quality=986.9	ks_quality_p_value=0.343303	log10_base_likelihood=-24.3209	log10_qual_likelihood_position_model=4.38637	log10_strand_likelihood_position_model=0.624472	new_cov=6/5	polymorphism_quality=19.1	quality=19.1	quality_position_model=1.77991e-21	ref_cov=129/120	reject=SURROUNDING_HOMOPOLYMER	tot_cov=135/125
RA	2782	.	NC_007779	3717873	0	T	C	bias_e_value=3100000	bias_p_value=0.667192	fisher_strand_p_value=0.815736	frequency=6.544161e-02	genotype_quality=984.4	ks_quality_p_value=0.373918	log10_base_likelihood=-47.4481	log10_qual_likelihood_position_model=8.8075	log10_strand_likelihood_position_model=0.747333	new_cov=9/10	polymorphism_quality=42.3	quality=42.3	quality_position_model=3.33504e-40	ref_cov=138/133	tot_cov=147/143
RA	2783	.	NC_007779	3717876	0	T	C	bias_e_value=4480610	bias_p_value=0.964332	fisher_strand_p_value=1	frequency=6.816864e-02	genotype_quality=955.1	ks_quality_p_value=0.745088	log10_base_likelihood=-47.3767	log10_qual_likelihood_position_model=10.4043	log10_strand_likelihood_position_model=0.738512	new_cov=10/10	polymorphism_quality=42.3	quality=42.3	quality_position_model=1.55615e-38	ref_cov=135/135	tot_cov=145/145
RA	2784	.	NC_007779	3717880	0	A	G	bias_e_value=4076260	bias_p_value=0.877307	fisher_strand_p_value=0.828891	frequency=7.739830e-02	genotype_quality=977.3	ks_quality_p_value=0.660515	log10_base_likelihood=-61.7507	log10_qual_likelihood_position_model=6.89496	log10_strand_likelihood_position_model=0.795164	new_cov=11/12	polymorphism_quality=56.7	quality=56.7	quality_position_model=1.90263e-56	ref_cov=142/132	tot_cov=153/144
RA	2785	.	NC_007779	3717888	0	G	C	bias_e_value=3816710	bias_p_value=0.821445	fisher_strand_p_value=0.532512	frequency=8.275127e-02	genotype_quality=1151.8	ks_quality_p_value=0.874168	log10_base_likelihood=-76.0068	log10_qual_likelihood_position_model=8.97572	log10_strand_likelihood_position_model=0.906604	new_cov=11/14	polymorphism_quality=71.0	quality=71.0	quality_position_model=1.48605e-68	ref_cov=144/133	tot_cov=155/147
RA	2786	.	NC_007779	3717891	0	A	G	bias_e_value=2544890	bias_p_value=0.54772	fisher_strand_p_value=0.221973	frequency=6.557083e-02	genotype_quality=945.7	ks_quality_p_value=0.975165	log10_base_likelihood=-42.4306	log10_qual_likelihood_position_model=9.37232	log10_strand_likelihood_position_model=1.16556	new_cov=6/12	polymorphism_quality=37.3	quality=37.3	quality_position_model=3.63608e-34	ref_cov=131/125	tot_cov=137/137
RA	2787	.	NC_007779	3717892	0	A	T	bias_e_value=2488380	bias_p_value=0.535558	fisher_strand_p_value=0.221973	frequency=6.562853e-02	genotype_quality=995.2	ks_quality_p_value=0.939788	log10_base_likelihood=-48.8139	log10_qual_likelihood_position_model=9.53022	log10_strand_likelihood_position_model=1.16556	new_cov=6/12	polymorphism_quality=43.7	quality=43.7	quality_position_model=1.98143e-40	ref_cov=131/125	tot_cov=137/137
RA	2788	.	NC_007779	3717895	0	A	G	bias_e_value=2192820	bias_p_value=0.471946	fisher_strand_p_value=0.222208	frequency=6.490040e-02	genotype_quality=945.7	ks_quality_p_value=0.766863	log10_base_likelihood=-44.6301	log10_qual_likelihood_position_model=7.77595	log10_strand_likelihood_position_model=1.15541	new_cov=6/12	polymorphism_quality=39.5	quality=39.5	quality_position_model=5.37564e-38	ref_cov=132/127	tot_cov=138/139
RA	2789	.	NC_007779	3717907	0	G	C	bias_e_value=1162670	bias_p_value=0.250234	fisher_strand_p_value=0.0780915	frequency=7.071400e-02	genotype_quality=1205.0	ks_quality_p_value=0.868073	log10_base_likelihood=-65.4767	log10_qual_likelihood_position_model=12.9077	log10_strand_likelihood_position_model=1.46704	new_cov=6/16	polymorphism_quality=60.4	quality=60.4	quality_position_model=1.77884e-53	ref_cov=137/152	reject=SURROUNDING_HOMOPOLYMER	tot_cov=143/168
RA	2790	.	NC_007779	3717908	0	C	A	bias_e_value=1189150	bias_p_value=0.255933	fisher_strand_p_value=0.0767672	frequency=6.977892e-02	genotype_quality=1221.4	ks_quality_p_value=0.910793	log10_base_likelihood=-60.3066	log10_qual_likelihood_position_model=12.5055	log10_strand_likelihood_position_model=1.49518	new_cov=6/16	polymorphism_quality=55.3	quality=55.3	quality_position_model=1.16779e-48	ref_cov=140/153	tot_cov=146/169
RA	2791	.	NC_007779	3717909	0	C	G	bias_e_value=1270550	bias_p_value=0.273451	fisher_strand_p_value=0.0767672	frequency=6.975079e-02	genotype_quality=1231.4	ks_quality_p_value=0.998095	log10_base_likelihood=-60.7188	log10_qual_likelihood_position_model=11.0176	log10_strand_likelihood_position_model=1.49518	new_cov=6/16	polymorphism_quality=55.7	quality=55.7	quality_position_model=1.44076e-50	ref_cov=140/153	tot_cov=146/169
RA	2792	.	NC_007779	3717913	0	A	G	bias_e_value=1259890	bias_p_value=0.271158	fisher_strand_p_value=0.075768	frequency=6.889057e-02	genotype_quality=1048.3	ks_quality_p_value=0.999504	log10_base_likelihood=-44.6335	log10_qual_likelihood_position_model=12.5197	log10_strand_likelihood_position_model=1.51594	new_cov=6/16	polymorphism_quality=39.5	quality=39.5	quality_position_model=7.3177e-33	ref_cov=138/149	tot_cov=144/165
RA	2793	.	NC_007779	3717915	0	T	C	bias_e_value=1262070	bias_p_value=0.271627	fisher_strand_p_value=0.0762588	frequency=7.174492e-02	genotype_quality=1040.8	ks_quality_p_value=0.995454	log10_base_likelihood=-52.2801	log10_qual_likelihood_position_model=12.3036	log10_strand_likelihood_position_model=1.50078	new_cov=6/16	polymorphism_quality=47.2	quality=47.2	quality_position_model=8.65735e-41	ref_cov=136/148	tot_cov=142/164
RA	2794	.	NC_007779	3717918	0	T	C	bias_e_value=883971	bias_p_value=0.190251	fisher_strand_p_value=0.0480441	frequency=7.221937e-02	genotype_quality=1036.8	ks_quality_p_value=0.975164	log10_base_likelihood=-51.8813	log10_qual_likelihood_position_model=12.5744	log10_strand_likelihood_position_model=1.63408	new_cov=6/16	polymorphism_quality=46.8	quality=46.8	quality_position_model=5.5566e-40	ref_cov=140/142	tot_cov=146/158
RA	2795	.	NC_007779	3717921	0	T	G	bias_e_value=839213	bias_p_value=0.180618	fisher_strand_p_value=0.0468218	frequency=7.333565e-02	genotype_quality=1049.2	ks_quality_p_value=0.934142	log10_base_likelihood=-72.2307	log10_qual_likelihood_position_model=12.5586	log10_strand_likelihood_position_model=1.66118	new_cov=6/16	polymorphism_quality=67.2	quality=67.2	quality_position_model=2.05965e-60	ref_cov=139/139	tot_cov=145/155
RA	2796	.	NC_007779	3717924	0	G	T	bias_e_value=900733	bias_p_value=0.193859	fisher_strand_p_value=0.0480344	frequency=7.362843e-02	genotype_quality=1173.6	ks_quality_p_value=1	log10_base_likelihood=-51.2219	log10_qual_likelihood_position_model=15.8464	log10_strand_likelihood_position_model=1.63175	new_cov=6/16	polymorphism_quality=46.1	quality=46.1	quality_position_model=4.9829e-36	ref_cov=137/139	tot_cov=143/155
RA	2797	.	NC_007779	3717925	0	G	A	bias_e_value=887768	bias_p_value=0.191069	fisher_strand_p_value=0.0480344	frequency=7.366562e-02	genotype_quality=1077.5	ks_quality_p_value=0.980925	log10_base_likelihood=-50.6947	log10_qual_likelihood_position_model=13.7514	log10_strand_likelihood_position_model=1.63175	new_cov=6/16	polymorphism_quality=45.6	quality=45.6	quality_position_model=1.31821e-37	ref_cov=137/139	tot_cov=143/155
RA	2798	.	NC_007779	3717931	0	C	G	bias_e_value=834823	bias_p_value=0.179674	fisher_strand_p_value=0.0436651	frequency=7.685566e-02	genotype_quality=1115.5	ks_quality_p_value=0.994769	log10_base_likelihood=-60.8181	log10_qual_likelihood_position_model=13.2713	log10_strand_likelihood_position_model=1.81446	new_cov=6/16	polymorphism_quality=55.8	quality=55.8	quality_position_model=4.40175e-48	ref_cov=137/127	tot_cov=143/143
RA	2799	.	NC_007779	3717932	0	C	T	bias_e_value=833156	bias_p_value=0.179315	fisher_strand_p_value=0.0437252	frequency=7.643080e-02	genotype_quality=1027.2	ks_quality_p_value=0.990786	log10_base_likelihood=-49.7494	log10_qual_likelihood_position_model=12.5233	log10_strand_likelihood_position_model=1.79794	new_cov=6/16	polymorphism_quality=44.7	quality=44.7	quality_position_model=1.00621e-37	ref_cov=137/128	tot_cov=143/144
RA	2800	.	NC_007779	3717933	0	G	C	bias_e_value=835719	bias_p_value=0.179866	fisher_strand_p_value=0.0437252	frequency=7.659435e-02	genotype_quality=1123.4	ks_quality_p_value=0.994807	log10_base_likelihood=-61.8442	log10_qual_likelihood_position_model=12.3715	log10_strand_likelihood_position_model=1.79794	new_cov=6/16	polymorphism_quality=56.8	quality=56.8	quality_position_model=4.92298e-50	ref_cov=137/128	tot_cov=143/144
RA	2801	.	NC_007779	3717937	0	A	G	bias_e_value=475925	bias_p_value=0.10243	fisher_strand_p_value=0.0439018	frequency=7.564974e-02	genotype_quality=944.0	ks_quality_p_value=0.480124	log10_base_likelihood=-51.6435	log10_qual_likelihood_position_model=10.8983	log10_strand_likelihood_position_model=1.78143	new_cov=6/16	polymorphism_quality=46.6	quality=46.6	quality_position_model=2.79668e-41	ref_cov=138/130	tot_cov=144/146
RA	2802	.	NC_007779	3717939	0	T	G	bias_e_value=623720	bias_p_value=0.134239	fisher_strand_p_value=0.0437264	frequency=7.718325e-02	genotype_quality=977.9	ks_quality_p_value=0.679847	log10_base_likelihood=-70.4279	log10_qual_likelihood_position_model=11.6613	log10_strand_likelihood_position_model=1.78217	new_cov=6/16	polymorphism_quality=65.4	quality=65.4	quality_position_model=2.20878e-59	ref_cov=135/127	tot_cov=142/143
RA	2803	.	NC_007779	3717942	0	C	G	bias_e_value=524307	bias_p_value=0.112843	fisher_strand_p_value=0.0440384	frequency=7.792997e-02	genotype_quality=1081.0	ks_quality_p_value=0.540905	log10_base_likelihood=-65.6014	log10_qual_likelihood_position_model=9.68215	log10_strand_likelihood_position_model=1.74992	new_cov=6/16	polymorphism_quality=60.6	quality=60.6	quality_position_model=1.47966e-56	ref_cov=133/127	tot_cov=139/143
RA	2804	.	NC_007779	3717945	0	A	T	bias_e_value=263112	bias_p_value=0.056628	fisher_strand_p_value=0.0805984	frequency=8.148384e-02	genotype_quality=1020.0	ks_quality_p_value=0.125627	log10_base_likelihood=-66.9149	log10_qual_likelihood_position_model=11.3804	log10_strand_likelihood_position_model=1.52441	new_cov=7/16	polymorphism_quality=61.9	quality=61.9	quality_position_model=2.13833e-56	ref_cov=132/127	reject=SURROUNDING_HOMOPOLYMER	tot_cov=139/143
RA	2805	.	NC_007779	3717963	0	A	C	bias_e_value=72086	bias_p_value=0.0155146	fisher_strand_p_value=0.0063636	frequency=6.816721e-02	genotype_quality=930.5	ks_quality_p_value=0.341923	log10_base_likelihood=-58.9339	log10_qual_likelihood_position_model=7.93383	log10_strand_likelihood_position_model=2.4131	new_cov=3/15	polymorphism_quality=53.9	quality=53.9	quality_position_model=5.96975e-51	ref_cov=124/122	tot_cov=127/137
RA	2806	.	NC_007779	3717976	0	A	G	bias_e_value=423662	bias_p_value=0.0911819	fisher_strand_p_value=0.0359446	frequency=3.363132e-02	genotype_quality=991.4	ks_quality_p_value=0.506797	log10_base_likelihood=-19.8568	log10_qual_likelihood_position_model=5.45913	log10_strand_likelihood_position_model=1.77697	new_cov=1/8	polymorphism_quality=14.6	quality=14.6	quality_position_model=1.07073e-14	ref_cov=132/126	reject=POLYMORPHISM_STRAND	tot_cov=133/134
RA	2807	.	NC_007779	3717977	0	T	G	bias_e_value=31749.7	bias_p_value=0.00683328	fisher_strand_p_value=0.0192326	frequency=3.370380e-02	genotype_quality=1021.1	ks_quality_p_value=0.0440012	log10_base_likelihood=-28.1331	log10_qual_likelihood_position_model=6.2994	log10_strand_likelihood_position_model=1.80045	new_cov=1/8	polymorphism_quality=22.9	quality=22.9	quality_position_model=3.30671e-22	ref_cov=133/125	reject=POLYMORPHISM_STRAND	tot_cov=134/133
RA	2808	.	NC_007779	3727557	0	A	G	bias_e_value=0.533777	bias_p_value=1.14881e-07	fisher_strand_p_value=5.77081e-09	frequency=5.474854e-02	genotype_quality=558.3	ks_quality_p_value=0.996672	log10_base_likelihood=-7.20212	log10_qual_likelihood_position_model=14.7547	log10_strand_likelihood_position_model=8.23876	new_cov=10/0	polymorphism_quality=1.7	quality=1.7	quality_position_model=Inf	ref_cov=18/132	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=28/132
RA	2809	.	NC_007779	3728155	0	T	C	bias_e_value=0.0851612	bias_p_value=1.83287e-08	fisher_strand_p_value=8.36875e-10	frequency=5.837011e-02	genotype_quality=369.1	ks_quality_p_value=1	log10_base_likelihood=-7.68473	log10_qual_likelihood_position_model=9.06951	log10_strand_likelihood_position_model=9.07734	new_cov=8/0	polymorphism_quality=2.2	quality=2.2	quality_position_model=Inf	ref_cov=4/103	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=12/103
RA	2810	.	NC_007779	3728157	0	A	C	bias_e_value=20693.3	bias_p_value=0.00445368	fisher_strand_p_value=0.000520854	frequency=4.759884e-02	genotype_quality=354.2	ks_quality_p_value=0.998768	log10_base_likelihood=-6.50286	log10_qual_likelihood_position_model=9.48402	log10_strand_likelihood_position_model=3.30244	new_cov=5/3	polymorphism_quality=1.0	quality=1.0	quality_position_model=Inf	ref_cov=9/101	reject=EVALUE,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=14/104
RA	2811	.	NC_007779	3731041	1	.	T	bias_e_value=3402830	bias_p_value=0.732369	fisher_strand_p_value=0.597731	frequency=1.449299e-02	genotype_quality=996.0	ks_quality_p_value=0.609814	log10_base_likelihood=-12.8747	log10_qual_likelihood_position_model=1.56399	log10_strand_likelihood_position_model=0.459152	new_cov=1/2	polymorphism_quality=7.5	quality=7.5	quality_position_model=6.76875e-13	ref_cov=110/94	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=111/96
RA	2812	.	NC_007779	3732310	0	G	T	bias_e_value=29.2496	bias_p_value=6.29521e-06	fisher_strand_p_value=4.00169e-07	frequency=6.349754e-02	genotype_quality=733.7	ks_quality_p_value=1	log10_base_likelihood=-13.6275	log10_qual_likelihood_position_model=13.4778	log10_strand_likelihood_position_model=6.39776	new_cov=0/18	polymorphism_quality=8.3	quality=8.3	quality_position_model=Inf	ref_cov=122/87	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=122/106
RA	2813	.	NC_007779	3734365	0	A	.	bias_e_value=3978290	bias_p_value=0.856221	fisher_strand_p_value=0.578021	frequency=1.223564e-02	genotype_quality=968.0	ks_quality_p_value=0.889599	log10_base_likelihood=-8.09725	log10_qual_likelihood_position_model=1.82783	log10_strand_likelihood_position_model=0.50069	new_cov=2/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=1.1061e-07	ref_cov=103/139	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=105/140
RA	2814	.	NC_007779	3739544	0	G	T	bias_e_value=21.4961	bias_p_value=4.62646e-06	fisher_strand_p_value=2.8828e-07	frequency=6.081247e-02	genotype_quality=801.2	ks_quality_p_value=0.999281	log10_base_likelihood=-13.3325	log10_qual_likelihood_position_model=16.1215	log10_strand_likelihood_position_model=6.54019	new_cov=0/20	polymorphism_quality=8.0	quality=8.0	quality_position_model=Inf	ref_cov=125/101	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=125/122
RA	2815	.	NC_007779	3741461	0	A	T	bias_e_value=23737.5	bias_p_value=0.00510886	fisher_strand_p_value=0.000607787	frequency=4.447651e-02	genotype_quality=825.0	ks_quality_p_value=1	log10_base_likelihood=-8.74766	log10_qual_likelihood_position_model=18.938	log10_strand_likelihood_position_model=3.24067	new_cov=11/1	polymorphism_quality=3.3	quality=3.3	quality_position_model=Inf	ref_cov=93/133	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=104/134
RA	2816	.	NC_007779	3750122	0	C	.	bias_e_value=253340	bias_p_value=0.0545246	fisher_strand_p_value=0.522614	frequency=9.625463e-01	genotype_quality=1223.4	ks_quality_p_value=0.0185024	log10_base_likelihood=-46.1067	log10_qual_likelihood_position_model=7.96248	log10_strand_likelihood_position_model=0.7496	new_cov=119/138	polymorphism_quality=41.0	quality=41.0	quality_position_model=1.05826e-39	ref_cov=6/4	tot_cov=125/142
RA	2817	.	NC_007779	3750123	0	C	T	bias_e_value=3992450	bias_p_value=0.859269	fisher_strand_p_value=0.522614	frequency=3.730106e-02	genotype_quality=1017.1	ks_quality_p_value=0.99274	log10_base_likelihood=-21.0571	log10_qual_likelihood_position_model=5.94945	log10_strand_likelihood_position_model=0.7496	new_cov=6/4	polymorphism_quality=15.8	quality=15.8	quality_position_model=1.84147e-16	ref_cov=119/138	tot_cov=125/142
RA	2818	.	NC_007779	3762475	0	T	G	bias_e_value=0.000232373	bias_p_value=5.0012e-11	fisher_strand_p_value=1.78278e-12	frequency=1.215782e-01	genotype_quality=597.1	ks_quality_p_value=1	log10_base_likelihood=-23.9021	log10_qual_likelihood_position_model=25.3367	log10_strand_likelihood_position_model=11.7489	new_cov=34/0	polymorphism_quality=18.7	quality=18.7	quality_position_model=Inf	ref_cov=77/114	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=112/114
RA	2819	.	NC_007779	3763528	0	A	C	bias_e_value=15.7581	bias_p_value=3.39152e-06	fisher_strand_p_value=2.06914e-07	frequency=4.890823e-02	genotype_quality=462.1	ks_quality_p_value=1	log10_base_likelihood=-13.7791	log10_qual_likelihood_position_model=8.88593	log10_strand_likelihood_position_model=6.68421	new_cov=0/7	polymorphism_quality=8.4	quality=8.4	quality_position_model=Inf	ref_cov=119/11	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=119/18
RA	2820	.	NC_007779	3788380	0	G	T	bias_e_value=22.3541	bias_p_value=4.81113e-06	fisher_strand_p_value=3.00352e-07	frequency=5.882835e-02	genotype_quality=840.8	ks_quality_p_value=1	log10_base_likelihood=-12.4751	log10_qual_likelihood_position_model=16.4424	log10_strand_likelihood_position_model=6.52237	new_cov=0/20	polymorphism_quality=7.1	quality=7.1	quality_position_model=Inf	ref_cov=129/105	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=129/126
RA	2821	.	NC_007779	3794653	1	.	T	bias_e_value=2293930	bias_p_value=0.493708	fisher_strand_p_value=0.188959	frequency=7.781982e-03	genotype_quality=1258.6	ks_quality_p_value=0.968228	log10_base_likelihood=-7.7723	log10_qual_likelihood_position_model=2.02859	log10_strand_likelihood_position_model=0.723632	new_cov=2/0	polymorphism_quality=2.3	quality=2.3	quality_position_model=6.61578e-07	ref_cov=110/145	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=112/145
RA	2822	.	NC_007779	3812429	0	G	T	bias_e_value=1122.17	bias_p_value=0.000241517	fisher_strand_p_value=2.04739e-05	frequency=4.158592e-02	genotype_quality=756.4	ks_quality_p_value=1	log10_base_likelihood=-5.69721	log10_qual_likelihood_position_model=11.839	log10_strand_likelihood_position_model=4.6888	new_cov=0/14	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=119/95	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=119/110
RA	2823	.	NC_007779	3818667	0	G	T	bias_e_value=102.35	bias_p_value=2.2028e-05	fisher_strand_p_value=1.53186e-06	frequency=5.355835e-02	genotype_quality=702.8	ks_quality_p_value=0.999319	log10_base_likelihood=-6.71796	log10_qual_likelihood_position_model=12.0552	log10_strand_likelihood_position_model=5.81478	new_cov=0/17	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=122/93	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=122/117
RA	2824	.	NC_007779	3818803	0	A	C	bias_e_value=4603560	bias_p_value=0.990795	fisher_strand_p_value=1	frequency=1.652431e-02	genotype_quality=955.0	ks_quality_p_value=0.86742	log10_base_likelihood=-11.1364	log10_qual_likelihood_position_model=3.04364	log10_strand_likelihood_position_model=0.423854	new_cov=2/2	polymorphism_quality=5.7	quality=5.7	quality_position_model=1.21703e-09	ref_cov=114/124	tot_cov=116/126
RA	2825	.	NC_007779	3820146	0	T	G	bias_e_value=0.0458982	bias_p_value=9.87838e-09	fisher_strand_p_value=4.38093e-10	frequency=8.408689e-02	genotype_quality=597.4	ks_quality_p_value=1	log10_base_likelihood=-10.357	log10_qual_likelihood_position_model=22.3651	log10_strand_likelihood_position_model=9.35843	new_cov=24/0	polymorphism_quality=4.9	quality=4.9	quality_position_model=Inf	ref_cov=67/115	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=91/115
RA	2826	.	NC_007779	3824607	0	T	.	bias_e_value=4469130	bias_p_value=0.961862	fisher_strand_p_value=1	frequency=1.292229e-02	genotype_quality=913.0	ks_quality_p_value=0.736846	log10_base_likelihood=-8.19356	log10_qual_likelihood_position_model=1.64984	log10_strand_likelihood_position_model=0.406417	new_cov=2/1	polymorphism_quality=2.7	quality=2.7	quality_position_model=4.59848e-08	ref_cov=119/110	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=121/111
RA	2827	.	NC_007779	3824921	0	A	C	bias_e_value=0.0979333	bias_p_value=2.10775e-08	fisher_strand_p_value=9.68865e-10	frequency=7.293224e-02	genotype_quality=596.1	ks_quality_p_value=1	log10_base_likelihood=-10.5558	log10_qual_likelihood_position_model=23.4615	log10_strand_likelihood_position_model=9.01374	new_cov=0/25	polymorphism_quality=5.1	quality=5.1	quality_position_model=Inf	ref_cov=112/74	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=112/100
RA	2828	.	NC_007779	3828029	0	G	T	bias_e_value=0.0236981	bias_p_value=5.1004e-09	fisher_strand_p_value=2.66135e-10	frequency=1.107597e-01	genotype_quality=719.9	ks_quality_p_value=0.82465	log10_base_likelihood=-31.7241	log10_qual_likelihood_position_model=32.4167	log10_strand_likelihood_position_model=9.5749	new_cov=28/0	polymorphism_quality=26.5	quality=26.5	quality_position_model=Inf	ref_cov=87/121	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=115/121
RA	2829	.	NC_007779	3841755	1	.	A	bias_e_value=3436200	bias_p_value=0.739551	fisher_strand_p_value=1	frequency=1.030922e-02	genotype_quality=953.1	ks_quality_p_value=0.371692	log10_base_likelihood=-8.10675	log10_qual_likelihood_position_model=0.893568	log10_strand_likelihood_position_model=0.303426	new_cov=1/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=7.34347e-09	ref_cov=106/86	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=107/87
RA	2830	.	NC_007779	3845596	0	G	T	bias_e_value=33.1177	bias_p_value=7.12771e-06	fisher_strand_p_value=4.56943e-07	frequency=6.160069e-02	genotype_quality=772.8	ks_quality_p_value=1	log10_base_likelihood=-11.6688	log10_qual_likelihood_position_model=14.6543	log10_strand_likelihood_position_model=6.44594	new_cov=0/21	polymorphism_quality=6.3	quality=6.3	quality_position_model=Inf	ref_cov=121/107	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=121/128
RA	2831	.	NC_007779	3846240	0	G	C	bias_e_value=0.000821066	bias_p_value=1.76713e-10	fisher_strand_p_value=6.60787e-12	frequency=1.125765e-01	genotype_quality=470.2	ks_quality_p_value=1	log10_base_likelihood=-23.3646	log10_qual_likelihood_position_model=14.996	log10_strand_likelihood_position_model=11.1833	new_cov=1/16	polymorphism_quality=18.1	quality=18.1	quality_position_model=Inf	ref_cov=112/15	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=113/31
RA	2832	.	NC_007779	3853538	0	G	T	bias_e_value=430.475	bias_p_value=9.26483e-05	fisher_strand_p_value=7.21604e-06	frequency=6.018686e-02	genotype_quality=687.8	ks_quality_p_value=1	log10_base_likelihood=-8.20501	log10_qual_likelihood_position_model=14.5044	log10_strand_likelihood_position_model=5.30381	new_cov=0/21	polymorphism_quality=2.7	quality=2.7	quality_position_model=Inf	ref_cov=100/116	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=100/137
RA	2833	.	NC_007779	3859263	0	T	C	bias_e_value=2.96657e-06	bias_p_value=6.38475e-13	fisher_strand_p_value=2.15639e-14	frequency=7.781029e-02	genotype_quality=599.1	ks_quality_p_value=0.909272	log10_base_likelihood=-16.2727	log10_qual_likelihood_position_model=21.2005	log10_strand_likelihood_position_model=13.669	new_cov=18/1	polymorphism_quality=10.9	quality=10.9	quality_position_model=Inf	ref_cov=19/159	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=37/160
RA	2834	.	NC_007779	3859265	0	A	C	bias_e_value=3.13119	bias_p_value=6.73906e-07	fisher_strand_p_value=3.72192e-08	frequency=5.673075e-02	genotype_quality=554.2	ks_quality_p_value=1	log10_base_likelihood=-11.0486	log10_qual_likelihood_position_model=15.0112	log10_strand_likelihood_position_model=7.45066	new_cov=14/5	polymorphism_quality=5.6	quality=5.6	quality_position_model=Inf	ref_cov=23/156	reject=FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=37/162
RA	2835	.	NC_007779	3859270	0	G	C	bias_e_value=0.0155631	bias_p_value=3.34956e-09	fisher_strand_p_value=1.41457e-10	frequency=5.309868e-02	genotype_quality=726.9	ks_quality_p_value=1	log10_base_likelihood=-16.8993	log10_qual_likelihood_position_model=11.3792	log10_strand_likelihood_position_model=9.84938	new_cov=11/0	polymorphism_quality=11.6	quality=11.6	quality_position_model=Inf	ref_cov=18/163	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=29/163
RA	2836	.	NC_007779	3859381	0	T	G	bias_e_value=797.845	bias_p_value=0.000171715	fisher_strand_p_value=1.41114e-05	frequency=3.196335e-02	genotype_quality=425.2	ks_quality_p_value=1	log10_base_likelihood=-6.14968	log10_qual_likelihood_position_model=8.66002	log10_strand_likelihood_position_model=4.8546	new_cov=1/5	polymorphism_quality=0.6	quality=0.6	quality_position_model=Inf	ref_cov=120/7	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=121/12
RA	2837	.	NC_007779	3873374	1	.	T	bias_e_value=1652180	bias_p_value=0.355588	fisher_strand_p_value=1	frequency=9.049416e-03	genotype_quality=1080.8	ks_quality_p_value=0.111266	log10_base_likelihood=-8.06069	log10_qual_likelihood_position_model=1.48706	log10_strand_likelihood_position_model=0.30379	new_cov=1/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=3.35517e-08	ref_cov=98/121	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=99/122
RA	2838	.	NC_007779	3873375	0	T	.	bias_e_value=2283540	bias_p_value=0.491471	fisher_strand_p_value=0.382798	frequency=2.241325e-02	genotype_quality=869.6	ks_quality_p_value=0.47451	log10_base_likelihood=-14.9398	log10_qual_likelihood_position_model=2.96086	log10_strand_likelihood_position_model=0.684715	new_cov=1/4	polymorphism_quality=9.6	quality=9.6	quality_position_model=2.39588e-13	ref_cov=99/119	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=100/123
RA	2839	.	NC_007779	3884404	0	T	C	bias_e_value=3124980	bias_p_value=0.672568	fisher_strand_p_value=0.381656	frequency=4.842281e-02	genotype_quality=900.0	ks_quality_p_value=0.811135	log10_base_likelihood=-27.7628	log10_qual_likelihood_position_model=7.42135	log10_strand_likelihood_position_model=0.846074	new_cov=8/4	polymorphism_quality=22.5	quality=22.5	quality_position_model=1.15626e-21	ref_cov=121/114	tot_cov=129/118
RA	2840	.	NC_007779	3884422	0	G	C	bias_e_value=106772	bias_p_value=0.0229799	fisher_strand_p_value=0.375933	frequency=5.080175e-02	genotype_quality=927.3	ks_quality_p_value=0.00916334	log10_base_likelihood=-34.2857	log10_qual_likelihood_position_model=7.01833	log10_strand_likelihood_position_model=0.891787	new_cov=8/4	polymorphism_quality=29.1	quality=29.1	quality_position_model=1.31345e-28	ref_cov=112/112	reject=SURROUNDING_HOMOPOLYMER	tot_cov=120/116
RA	2841	.	NC_007779	3884425	0	G	C	bias_e_value=102905	bias_p_value=0.0221475	fisher_strand_p_value=0.375059	frequency=5.171490e-02	genotype_quality=911.0	ks_quality_p_value=0.0087948	log10_base_likelihood=-36.1717	log10_qual_likelihood_position_model=5.77916	log10_strand_likelihood_position_model=0.90645	new_cov=8/4	polymorphism_quality=31.0	quality=31.0	quality_position_model=9.63968e-32	ref_cov=109/111	tot_cov=117/115
RA	2842	.	NC_007779	3884434	0	G	C	bias_e_value=3980440	bias_p_value=0.856685	fisher_strand_p_value=0.718786	frequency=2.833652e-02	genotype_quality=993.5	ks_quality_p_value=0.716354	log10_base_likelihood=-17.7494	log10_qual_likelihood_position_model=3.9354	log10_strand_likelihood_position_model=0.565441	new_cov=3/4	polymorphism_quality=12.4	quality=12.4	quality_position_model=2.46385e-15	ref_cov=122/117	tot_cov=129/121
RA	2843	.	NC_007779	3884435	0	A	G	bias_e_value=3575370	bias_p_value=0.769503	fisher_strand_p_value=0.717726	frequency=2.962685e-02	genotype_quality=911.0	ks_quality_p_value=0.561878	log10_base_likelihood=-14.3741	log10_qual_likelihood_position_model=5.07981	log10_strand_likelihood_position_model=0.567503	new_cov=3/4	polymorphism_quality=9.0	quality=9.0	quality_position_model=1.00158e-10	ref_cov=122/116	reject=SURROUNDING_HOMOPOLYMER	tot_cov=130/120
RA	2844	.	NC_007779	3884436	0	G	C	bias_e_value=4057580	bias_p_value=0.873287	fisher_strand_p_value=0.713914	frequency=2.853203e-02	genotype_quality=975.3	ks_quality_p_value=0.757637	log10_base_likelihood=-17.7188	log10_qual_likelihood_position_model=4.74129	log10_strand_likelihood_position_model=0.576228	new_cov=3/4	polymorphism_quality=12.4	quality=12.4	quality_position_model=1.78973e-14	ref_cov=124/114	tot_cov=127/118
RA	2845	.	NC_007779	3884437	0	C	G	bias_e_value=4179370	bias_p_value=0.899498	fisher_strand_p_value=0.714776	frequency=2.866173e-02	genotype_quality=980.8	ks_quality_p_value=0.820673	log10_base_likelihood=-17.4426	log10_qual_likelihood_position_model=3.75968	log10_strand_likelihood_position_model=0.574021	new_cov=3/4	polymorphism_quality=12.1	quality=12.1	quality_position_model=3.41584e-15	ref_cov=123/114	tot_cov=127/118
RA	2846	.	NC_007779	3884437	1	.	G	bias_e_value=34674.2	bias_p_value=0.00746271	fisher_strand_p_value=0.12318	frequency=1.639366e-02	genotype_quality=1181.4	ks_quality_p_value=0.00759764	log10_base_likelihood=-17.4559	log10_qual_likelihood_position_model=3.02617	log10_strand_likelihood_position_model=1.14432	new_cov=4/0	polymorphism_quality=12.1	quality=12.1	quality_position_model=2.26033e-15	ref_cov=123/117	reject=POLYMORPHISM_STRAND	tot_cov=127/117
RA	2847	.	NC_007779	3884446	0	G	C	bias_e_value=1241800	bias_p_value=0.267264	fisher_strand_p_value=0.385459	frequency=4.909277e-02	genotype_quality=964.2	ks_quality_p_value=0.192568	log10_base_likelihood=-30.972	log10_qual_likelihood_position_model=9.0625	log10_strand_likelihood_position_model=0.82624	new_cov=8/4	polymorphism_quality=25.8	quality=25.8	quality_position_model=2.87413e-23	ref_cov=121/111	tot_cov=129/115
RA	2848	.	NC_007779	3884449	0	T	C	bias_e_value=3349360	bias_p_value=0.720862	fisher_strand_p_value=0.379637	frequency=4.890299e-02	genotype_quality=882.0	ks_quality_p_value=0.930563	log10_base_likelihood=-28.4381	log10_qual_likelihood_position_model=5.45752	log10_strand_likelihood_position_model=0.858558	new_cov=8/4	polymorphism_quality=23.2	quality=23.2	quality_position_model=2.56744e-24	ref_cov=119/114	reject=SURROUNDING_HOMOPOLYMER	tot_cov=127/118
RA	2849	.	NC_007779	3884452	0	C	G	bias_e_value=3464200	bias_p_value=0.745578	fisher_strand_p_value=0.384458	frequency=5.236435e-02	genotype_quality=909.4	ks_quality_p_value=0.982764	log10_base_likelihood=-33.8263	log10_qual_likelihood_position_model=5.17278	log10_strand_likelihood_position_model=0.827159	new_cov=8/4	polymorphism_quality=28.7	quality=28.7	quality_position_model=4.53092e-30	ref_cov=113/104	tot_cov=121/108
RA	2850	.	NC_007779	3884455	0	G	C	bias_e_value=2310810	bias_p_value=0.49734	fisher_strand_p_value=0.378459	frequency=5.171919e-02	genotype_quality=885.3	ks_quality_p_value=0.489092	log10_base_likelihood=-34.3624	log10_qual_likelihood_position_model=4.85054	log10_strand_likelihood_position_model=0.862312	new_cov=8/4	polymorphism_quality=29.2	quality=29.2	quality_position_model=6.71063e-31	ref_cov=112/108	reject=SURROUNDING_HOMOPOLYMER	tot_cov=120/112
RA	2851	.	NC_007779	3884461	0	G	C	bias_e_value=2045000	bias_p_value=0.440133	fisher_strand_p_value=0.221259	frequency=4.973936e-02	genotype_quality=860.5	ks_quality_p_value=0.691263	log10_base_likelihood=-30.3992	log10_qual_likelihood_position_model=4.62631	log10_strand_likelihood_position_model=1.00144	new_cov=8/3	polymorphism_quality=25.2	quality=25.2	quality_position_model=5.44434e-27	ref_cov=108/102	tot_cov=116/105
RA	2852	.	NC_007779	3884464	0	G	C	bias_e_value=1022980	bias_p_value=0.220169	fisher_strand_p_value=0.221249	frequency=4.932165e-02	genotype_quality=866.8	ks_quality_p_value=0.25744	log10_base_likelihood=-32.3417	log10_qual_likelihood_position_model=3.73887	log10_strand_likelihood_position_model=1.00225	new_cov=8/3	polymorphism_quality=27.2	quality=27.2	quality_position_model=7.65077e-30	ref_cov=109/103	tot_cov=117/106
RA	2853	.	NC_007779	3884473	0	T	C	bias_e_value=352043	bias_p_value=0.0757679	fisher_strand_p_value=0.222371	frequency=4.778290e-02	genotype_quality=800.8	ks_quality_p_value=0.0650795	log10_base_likelihood=-26.6262	log10_qual_likelihood_position_model=5.26936	log10_strand_likelihood_position_model=0.996176	new_cov=8/3	polymorphism_quality=21.4	quality=21.4	quality_position_model=1.54358e-22	ref_cov=113/106	tot_cov=121/109
RA	2854	.	NC_007779	3884474	0	G	A	bias_e_value=2485170	bias_p_value=0.534868	fisher_strand_p_value=0.22124	frequency=4.871225e-02	genotype_quality=847.9	ks_quality_p_value=0.940913	log10_base_likelihood=-23.2755	log10_qual_likelihood_position_model=4.92867	log10_strand_likelihood_position_model=1.00305	new_cov=8/3	polymorphism_quality=18.0	quality=18.0	quality_position_model=1.73567e-19	ref_cov=110/104	tot_cov=118/107
RA	2855	.	NC_007779	3884476	0	G	C	bias_e_value=200138	bias_p_value=0.0430744	fisher_strand_p_value=0.220136	frequency=4.908752e-02	genotype_quality=851.2	ks_quality_p_value=0.0330315	log10_base_likelihood=-31.7123	log10_qual_likelihood_position_model=5.47033	log10_strand_likelihood_position_model=1.01177	new_cov=8/3	polymorphism_quality=26.5	quality=26.5	quality_position_model=1.87618e-27	ref_cov=109/104	tot_cov=117/107
RA	2856	.	NC_007779	3884479	0	G	A	bias_e_value=878737	bias_p_value=0.189125	fisher_strand_p_value=0.217586	frequency=4.784870e-02	genotype_quality=809.1	ks_quality_p_value=0.213632	log10_base_likelihood=-23.8141	log10_qual_likelihood_position_model=7.40221	log10_strand_likelihood_position_model=1.04088	new_cov=8/3	polymorphism_quality=18.6	quality=18.6	quality_position_model=1.72906e-17	ref_cov=110/108	tot_cov=118/111
RA	2857	.	NC_007779	3884482	0	G	C	bias_e_value=213570	bias_p_value=0.0459653	fisher_strand_p_value=0.216376	frequency=4.581451e-02	genotype_quality=950.1	ks_quality_p_value=0.0363409	log10_base_likelihood=-31.7461	log10_qual_likelihood_position_model=5.14274	log10_strand_likelihood_position_model=1.07021	new_cov=8/3	polymorphism_quality=26.6	quality=26.6	quality_position_model=9.28484e-28	ref_cov=114/115	tot_cov=122/118
RA	2858	.	NC_007779	3884485	0	A	G	bias_e_value=336751	bias_p_value=0.0724767	fisher_strand_p_value=0.13592	frequency=5.131912e-02	genotype_quality=796.0	ks_quality_p_value=0.100792	log10_base_likelihood=-27.8979	log10_qual_likelihood_position_model=7.62176	log10_strand_likelihood_position_model=1.25893	new_cov=9/3	polymorphism_quality=22.7	quality=22.7	quality_position_model=3.5196e-21	ref_cov=109/112	tot_cov=118/116
RA	2859	.	NC_007779	3885052	0	T	G	bias_e_value=1.75399e-10	bias_p_value=3.77499e-17	fisher_strand_p_value=8.86844e-19	frequency=7.002401e-02	genotype_quality=632.5	ks_quality_p_value=1	log10_base_likelihood=-6.84784	log10_qual_likelihood_position_model=40.0794	log10_strand_likelihood_position_model=18.0522	new_cov=37/0	polymorphism_quality=1.3	quality=1.3	quality_position_model=Inf	ref_cov=51/143	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=88/143
RA	2860	.	NC_007779	3891224	0	G	C	bias_e_value=16944.2	bias_p_value=0.00364678	fisher_strand_p_value=0.00041501	frequency=2.779293e-02	genotype_quality=564.0	ks_quality_p_value=1	log10_base_likelihood=-6.16117	log10_qual_likelihood_position_model=5.03139	log10_strand_likelihood_position_model=3.38194	new_cov=0/5	polymorphism_quality=0.6	quality=0.6	quality_position_model=Inf	ref_cov=116/28	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=116/33
RA	2861	.	NC_007779	3891907	0	T	.	bias_e_value=2555690	bias_p_value=0.550045	fisher_strand_p_value=0.252337	frequency=1.499176e-02	genotype_quality=786.3	ks_quality_p_value=0.863859	log10_base_likelihood=-8.57525	log10_qual_likelihood_position_model=2.30816	log10_strand_likelihood_position_model=0.796314	new_cov=3/0	polymorphism_quality=3.1	quality=3.1	quality_position_model=2.25172e-07	ref_cov=106/91	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=109/91
RA	2862	.	NC_007779	3893880	0	G	T	bias_e_value=11.6172	bias_p_value=2.50028e-06	fisher_strand_p_value=1.49579e-07	frequency=4.864979e-02	genotype_quality=815.3	ks_quality_p_value=1	log10_base_likelihood=-6.95593	log10_qual_likelihood_position_model=20.6714	log10_strand_likelihood_position_model=6.82513	new_cov=0/19	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=140/99	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=140/120
RA	2863	.	NC_007779	3895373	0	T	G	bias_e_value=0.000237485	bias_p_value=5.11124e-11	fisher_strand_p_value=1.82347e-12	frequency=9.913731e-02	genotype_quality=498.5	ks_quality_p_value=1	log10_base_likelihood=-12.0245	log10_qual_likelihood_position_model=28.8774	log10_strand_likelihood_position_model=11.7391	new_cov=28/0	polymorphism_quality=6.6	quality=6.6	quality_position_model=Inf	ref_cov=52/107	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=80/107
RA	2864	.	NC_007779	3898657	0	C	G	frequency=1	genotype_quality=946.0	new_cov=106/119	quality=946.0	ref_cov=0/0	tot_cov=106/119
RA	2865	.	NC_007779	3900676	1	.	G	bias_e_value=99707.8	bias_p_value=0.0214595	fisher_strand_p_value=0.00406867	frequency=2.362156e-02	genotype_quality=1214.6	ks_quality_p_value=0.781228	log10_base_likelihood=-26.1731	log10_qual_likelihood_position_model=2.63158	log10_strand_likelihood_position_model=2.39055	new_cov=6/0	polymorphism_quality=20.9	quality=20.9	quality_position_model=2.45538e-23	ref_cov=97/151	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=103/151
RA	2866	.	NC_007779	3900680	0	T	G	bias_e_value=0.000558836	bias_p_value=1.20275e-10	fisher_strand_p_value=4.43126e-12	frequency=4.985285e-02	genotype_quality=623.3	ks_quality_p_value=1	log10_base_likelihood=-9.40182	log10_qual_likelihood_position_model=17.0831	log10_strand_likelihood_position_model=11.3535	new_cov=12/0	polymorphism_quality=4.0	quality=4.0	quality_position_model=Inf	ref_cov=14/158	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=27/158
RA	2867	.	NC_007779	3910746	0	C	A	bias_e_value=5.53387	bias_p_value=1.19102e-06	fisher_strand_p_value=6.80462e-08	frequency=6.628656e-02	genotype_quality=835.6	ks_quality_p_value=1	log10_base_likelihood=-14.7608	log10_qual_likelihood_position_model=17.9634	log10_strand_likelihood_position_model=7.1672	new_cov=22/0	polymorphism_quality=9.4	quality=9.4	quality_position_model=Inf	ref_cov=106/131	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=129/131
RA	2868	.	NC_007779	3930443	0	T	G	bias_e_value=6.26953e-10	bias_p_value=1.34935e-16	fisher_strand_p_value=3.27023e-18	frequency=1.195273e-01	genotype_quality=452.4	ks_quality_p_value=1	log10_base_likelihood=-16.5285	log10_qual_likelihood_position_model=25.6769	log10_strand_likelihood_position_model=17.4854	new_cov=30/0	polymorphism_quality=11.2	quality=11.2	quality_position_model=Inf	ref_cov=26/114	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=56/114
RA	2869	.	NC_007779	3952095	1	.	G	bias_e_value=6805.68	bias_p_value=0.00146474	fisher_strand_p_value=0.000200398	frequency=5.590105e-02	genotype_quality=706.6	ks_quality_p_value=0.745117	log10_base_likelihood=-42.179	log10_qual_likelihood_position_model=2.74811	log10_strand_likelihood_position_model=3.69811	new_cov=9/0	polymorphism_quality=37.1	quality=37.1	quality_position_model=4.96802e-38	ref_cov=56/96	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,INDEL_HOMOPOLYMER	tot_cov=65/96
RA	2870	.	NC_007779	3981332	1	.	A	bias_e_value=2076070	bias_p_value=0.446819	fisher_strand_p_value=0.231177	frequency=9.009361e-03	genotype_quality=1074.2	ks_quality_p_value=0.677107	log10_base_likelihood=-8.3174	log10_qual_likelihood_position_model=1.41844	log10_strand_likelihood_position_model=0.636056	new_cov=2/0	polymorphism_quality=2.8	quality=2.8	quality_position_model=3.41095e-08	ref_cov=105/115	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=107/115
RA	2871	.	NC_007779	3985138	0	T	G	bias_e_value=0.00375898	bias_p_value=8.09021e-10	fisher_strand_p_value=3.21545e-11	frequency=8.563995e-02	genotype_quality=608.9	ks_quality_p_value=1	log10_base_likelihood=-16.2261	log10_qual_likelihood_position_model=25.9144	log10_strand_likelihood_position_model=10.4928	new_cov=30/0	polymorphism_quality=10.9	quality=10.9	quality_position_model=Inf	ref_cov=74/110	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=104/110
RA	2872	.	NC_007779	4000222	0	C	G	bias_e_value=4348.51	bias_p_value=0.000935902	fisher_strand_p_value=9.86716e-05	frequency=3.514862e-02	genotype_quality=849.0	ks_quality_p_value=0.920267	log10_base_likelihood=-5.99612	log10_qual_likelihood_position_model=15.3505	log10_strand_likelihood_position_model=4.00581	new_cov=0/12	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=137/112	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=137/124
RA	2873	.	NC_007779	4023064	1	.	G	bias_e_value=2578580	bias_p_value=0.554971	fisher_strand_p_value=0.288882	frequency=1.898670e-02	genotype_quality=761.1	ks_quality_p_value=0.765824	log10_base_likelihood=-12.9157	log10_qual_likelihood_position_model=1.32872	log10_strand_likelihood_position_model=0.627412	new_cov=3/0	polymorphism_quality=7.5	quality=7.5	quality_position_model=5.25316e-13	ref_cov=95/60	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=98/60
RA	2874	.	NC_007779	4029622	1	.	G	bias_e_value=1543570	bias_p_value=0.332212	fisher_strand_p_value=0.100982	frequency=1.463413e-02	genotype_quality=993.5	ks_quality_p_value=0.998697	log10_base_likelihood=-12.1054	log10_qual_likelihood_position_model=2.32472	log10_strand_likelihood_position_model=0.995757	new_cov=3/0	polymorphism_quality=6.7	quality=6.7	quality_position_model=8.73309e-11	ref_cov=93/109	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=96/109
RA	2875	.	NC_007779	4029628	0	C	G	bias_e_value=73.1496	bias_p_value=1.57435e-05	fisher_strand_p_value=1.06733e-06	frequency=4.798126e-02	genotype_quality=553.0	ks_quality_p_value=1	log10_base_likelihood=-6.44918	log10_qual_likelihood_position_model=10.611	log10_strand_likelihood_position_model=5.9717	new_cov=9/0	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=27/115	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=36/115
RA	2876	.	NC_007779	4029633	0	T	G	bias_e_value=8.63641e-09	bias_p_value=1.85876e-15	fisher_strand_p_value=4.81901e-17	frequency=1.081758e-01	genotype_quality=436.7	ks_quality_p_value=1	log10_base_likelihood=-17.5477	log10_qual_likelihood_position_model=23.4666	log10_strand_likelihood_position_model=16.317	new_cov=20/0	polymorphism_quality=12.2	quality=12.2	quality_position_model=Inf	ref_cov=11/114	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=31/114
RA	2877	.	NC_007779	4031691	1	.	T	bias_e_value=625674	bias_p_value=0.13466	fisher_strand_p_value=0.0410959	frequency=1.369858e-02	genotype_quality=700.3	ks_quality_p_value=0.726276	log10_base_likelihood=-8.65365	log10_qual_likelihood_position_model=0.693264	log10_strand_likelihood_position_model=1.3862	new_cov=2/0	polymorphism_quality=3.2	quality=3.2	quality_position_model=1.62809e-08	ref_cov=28/116	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=30/116
RA	2878	.	NC_007779	4031700	0	T	C	bias_e_value=222.212	bias_p_value=4.78252e-05	fisher_strand_p_value=3.71397e-06	frequency=3.640842e-02	genotype_quality=510.2	ks_quality_p_value=0.950011	log10_base_likelihood=-7.46072	log10_qual_likelihood_position_model=6.77857	log10_strand_likelihood_position_model=5.43315	new_cov=5/1	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=6/144	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=11/145
RA	2879	.	NC_007779	4051634	0	G	.	bias_e_value=1191840	bias_p_value=0.256512	fisher_strand_p_value=0.268692	frequency=1.476860e-02	genotype_quality=814.2	ks_quality_p_value=0.26103	log10_base_likelihood=-8.28748	log10_qual_likelihood_position_model=3.2044	log10_strand_likelihood_position_model=0.700429	new_cov=3/0	polymorphism_quality=2.8	quality=2.8	quality_position_model=3.05665e-06	ref_cov=116/84	reject=POLYMORPHISM_STRAND	tot_cov=119/84
RA	2880	.	NC_007779	4051636	0	G	T	bias_e_value=1319120	bias_p_value=0.283907	fisher_strand_p_value=0.273897	frequency=1.392746e-02	genotype_quality=858.7	ks_quality_p_value=0.294757	log10_base_likelihood=-6.84568	log10_qual_likelihood_position_model=2.74473	log10_strand_likelihood_position_model=0.679848	new_cov=3/0	polymorphism_quality=1.3	quality=1.3	quality_position_model=3.13168e-05	ref_cov=125/87	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=128/87
RA	2881	.	NC_007779	4051639	0	T	C	bias_e_value=200759	bias_p_value=0.043208	fisher_strand_p_value=0.2692	frequency=1.401520e-02	genotype_quality=816.9	ks_quality_p_value=0.027112	log10_base_likelihood=-5.6955	log10_qual_likelihood_position_model=3.37348	log10_strand_likelihood_position_model=0.698761	new_cov=3/0	polymorphism_quality=0.1	quality=0.1	quality_position_model=0.00272495	ref_cov=122/88	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=125/88
RA	2882	.	NC_007779	4051642	0	C	G	bias_e_value=463242	bias_p_value=0.0997006	fisher_strand_p_value=0.2655	frequency=1.399422e-02	genotype_quality=839.9	ks_quality_p_value=0.0767388	log10_base_likelihood=-6.7973	log10_qual_likelihood_position_model=3.18331	log10_strand_likelihood_position_model=0.715443	new_cov=3/0	polymorphism_quality=1.3	quality=1.3	quality_position_model=0.000112349	ref_cov=121/90	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=124/90
RA	2883	.	NC_007779	4051645	0	C	T	bias_e_value=3599570	bias_p_value=0.774711	fisher_strand_p_value=0.63835	frequency=1.848125e-02	genotype_quality=776.0	ks_quality_p_value=0.6408	log10_base_likelihood=-6.32554	log10_qual_likelihood_position_model=5.12986	log10_strand_likelihood_position_model=0.48926	new_cov=3/1	polymorphism_quality=0.8	quality=0.8	quality_position_model=0.0321175	ref_cov=120/90	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=124/91
RA	2884	.	NC_007779	4051654	0	C	T	bias_e_value=9.67661	bias_p_value=2.08263e-06	fisher_strand_p_value=0.00335502	frequency=4.612446e-02	genotype_quality=885.5	ks_quality_p_value=3.67097e-05	log10_base_likelihood=-25.154	log10_qual_likelihood_position_model=9.84119	log10_strand_likelihood_position_model=2.57284	new_cov=11/0	polymorphism_quality=19.9	quality=19.9	quality_position_model=8.09908e-15	ref_cov=130/97	reject=POLYMORPHISM_STRAND,KS_QUALITY_P_VALUE	tot_cov=141/97
RA	2885	.	NC_007779	4051660	0	T	C	bias_e_value=0.250556	bias_p_value=5.39256e-08	fisher_strand_p_value=0.000344855	frequency=5.665112e-02	genotype_quality=840.3	ks_quality_p_value=7.52905e-06	log10_base_likelihood=-36.6982	log10_qual_likelihood_position_model=13.7285	log10_strand_likelihood_position_model=3.71911	new_cov=14/0	polymorphism_quality=31.5	quality=31.5	quality_position_model=2.04403e-21	ref_cov=123/110	reject=POLYMORPHISM_STRAND,KS_QUALITY_P_VALUE,FISHER_STRAND_P_VALUE	tot_cov=137/110
RA	2886	.	NC_007779	4051678	0	G	C	bias_e_value=10974.4	bias_p_value=0.00236195	fisher_strand_p_value=0.000678256	frequency=7.654142e-02	genotype_quality=997.5	ks_quality_p_value=0.375433	log10_base_likelihood=-56.5209	log10_qual_likelihood_position_model=8.93183	log10_strand_likelihood_position_model=3.43318	new_cov=18/2	polymorphism_quality=51.5	quality=51.5	quality_position_model=1.68893e-46	ref_cov=122/119	reject=FISHER_STRAND_P_VALUE	tot_cov=140/121
RA	2887	.	NC_007779	4051681	0	T	C	bias_e_value=2095.34	bias_p_value=0.000450966	fisher_strand_p_value=0.00028885	frequency=7.206011e-02	genotype_quality=951.9	ks_quality_p_value=0.140499	log10_base_likelihood=-50.7881	log10_qual_likelihood_position_model=10.0317	log10_strand_likelihood_position_model=3.70357	new_cov=18/2	polymorphism_quality=45.7	quality=45.7	quality_position_model=2.33536e-39	ref_cov=125/132	reject=FISHER_STRAND_P_VALUE	tot_cov=143/134
RA	2888	.	NC_007779	4051684	0	G	C	bias_e_value=108391	bias_p_value=0.0233283	fisher_strand_p_value=0.00640615	frequency=8.053684e-02	genotype_quality=1035.3	ks_quality_p_value=0.54734	log10_base_likelihood=-63.5087	log10_qual_likelihood_position_model=10.0502	log10_strand_likelihood_position_model=2.51881	new_cov=18/4	polymorphism_quality=58.5	quality=58.5	quality_position_model=2.58841e-53	ref_cov=127/124	tot_cov=145/128
RA	2889	.	NC_007779	4051688	0	G	C	bias_e_value=220934	bias_p_value=0.0475502	fisher_strand_p_value=0.00869915	frequency=8.207560e-02	genotype_quality=1042.8	ks_quality_p_value=0.941677	log10_base_likelihood=-64.5135	log10_qual_likelihood_position_model=8.85735	log10_strand_likelihood_position_model=2.30842	new_cov=18/5	polymorphism_quality=59.5	quality=59.5	quality_position_model=9.88704e-56	ref_cov=127/130	tot_cov=145/135
RA	2890	.	NC_007779	4051689	0	A	G	bias_e_value=221420	bias_p_value=0.0476547	fisher_strand_p_value=0.00829031	frequency=7.822847e-02	genotype_quality=991.5	ks_quality_p_value=0.99074	log10_base_likelihood=-53.3795	log10_qual_likelihood_position_model=9.53205	log10_strand_likelihood_position_model=2.37165	new_cov=18/5	polymorphism_quality=48.3	quality=48.3	quality_position_model=8.33997e-44	ref_cov=132/138	tot_cov=150/143
RA	2891	.	NC_007779	4051690	0	T	A	bias_e_value=226071	bias_p_value=0.0486558	fisher_strand_p_value=0.00842743	frequency=7.707977e-02	genotype_quality=1058.5	ks_quality_p_value=0.999423	log10_base_likelihood=-57.323	log10_qual_likelihood_position_model=11.4329	log10_strand_likelihood_position_model=2.3519	new_cov=18/5	polymorphism_quality=52.3	quality=52.3	quality_position_model=7.0528e-46	ref_cov=133/138	tot_cov=151/143
RA	2892	.	NC_007779	4051694	0	G	A	bias_e_value=414145	bias_p_value=0.0891338	fisher_strand_p_value=0.0177536	frequency=8.462906e-02	genotype_quality=1001.6	ks_quality_p_value=0.997384	log10_base_likelihood=-55.9268	log10_qual_likelihood_position_model=10.2827	log10_strand_likelihood_position_model=2.09829	new_cov=18/6	polymorphism_quality=50.9	quality=50.9	quality_position_model=6.92848e-46	ref_cov=126/133	tot_cov=144/139
RA	2893	.	NC_007779	4051695	0	C	A	bias_e_value=412293	bias_p_value=0.0887352	fisher_strand_p_value=0.0176083	frequency=8.303022e-02	genotype_quality=1056.3	ks_quality_p_value=1	log10_base_likelihood=-49.5507	log10_qual_likelihood_position_model=12.6	log10_strand_likelihood_position_model=2.11761	new_cov=18/6	polymorphism_quality=44.5	quality=44.5	quality_position_model=3.99306e-37	ref_cov=126/134	tot_cov=144/140
RA	2894	.	NC_007779	4051699	0	G	C	bias_e_value=409561	bias_p_value=0.0881472	fisher_strand_p_value=0.0174629	frequency=8.146667e-02	genotype_quality=1033.8	ks_quality_p_value=1	log10_base_likelihood=-54.8099	log10_qual_likelihood_position_model=16.0896	log10_strand_likelihood_position_model=2.17435	new_cov=18/6	polymorphism_quality=49.7	quality=49.7	quality_position_model=7.555e-39	ref_cov=128/139	tot_cov=146/145
RA	2895	.	NC_007779	4051705	0	G	C	bias_e_value=278788	bias_p_value=0.0600016	fisher_strand_p_value=0.0108656	frequency=7.949781e-02	genotype_quality=1149.2	ks_quality_p_value=1	log10_base_likelihood=-63.6214	log10_qual_likelihood_position_model=11.1013	log10_strand_likelihood_position_model=2.20984	new_cov=18/6	polymorphism_quality=58.6	quality=58.6	quality_position_model=1.10947e-52	ref_cov=131/144	tot_cov=149/150
RA	2896	.	NC_007779	4051706	0	T	A	bias_e_value=412036	bias_p_value=0.0886798	fisher_strand_p_value=0.0175946	frequency=7.987595e-02	genotype_quality=1066.6	ks_quality_p_value=1	log10_base_likelihood=-63.8972	log10_qual_likelihood_position_model=11.0711	log10_strand_likelihood_position_model=2.17205	new_cov=18/6	polymorphism_quality=58.9	quality=58.9	quality_position_model=5.01114e-53	ref_cov=132/143	tot_cov=150/149
RA	2897	.	NC_007779	4051708	0	T	G	bias_e_value=778411	bias_p_value=0.167532	fisher_strand_p_value=0.0396207	frequency=9.136677e-02	genotype_quality=995.8	ks_quality_p_value=1	log10_base_likelihood=-82.2834	log10_qual_likelihood_position_model=10.3071	log10_strand_likelihood_position_model=1.76443	new_cov=18/8	polymorphism_quality=77.3	quality=77.3	quality_position_model=1.17953e-72	ref_cov=122/136	tot_cov=140/144
RA	2898	.	NC_007779	4051711	0	T	C	bias_e_value=476898	bias_p_value=0.10264	fisher_strand_p_value=0.0212613	frequency=8.734798e-02	genotype_quality=964.8	ks_quality_p_value=0.993946	log10_base_likelihood=-57.7983	log10_qual_likelihood_position_model=13.328	log10_strand_likelihood_position_model=1.98029	new_cov=18/7	polymorphism_quality=52.7	quality=52.7	quality_position_model=7.97517e-45	ref_cov=123/137	tot_cov=141/144
RA	2899	.	NC_007779	4051723	0	T	A	bias_e_value=1232190	bias_p_value=0.265195	fisher_strand_p_value=0.0857152	frequency=8.630466e-02	genotype_quality=1001.3	ks_quality_p_value=0.856713	log10_base_likelihood=-73.2019	log10_qual_likelihood_position_model=5.51633	log10_strand_likelihood_position_model=1.53687	new_cov=16/8	polymorphism_quality=68.2	quality=68.2	quality_position_model=1.40516e-68	ref_cov=118/136	tot_cov=134/144
RA	2900	.	NC_007779	4051729	0	C	G	bias_e_value=626195	bias_p_value=0.134772	fisher_strand_p_value=0.0310039	frequency=6.829262e-02	genotype_quality=1077.1	ks_quality_p_value=0.963715	log10_base_likelihood=-55.14	log10_qual_likelihood_position_model=7.318	log10_strand_likelihood_position_model=1.83044	new_cov=14/5	polymorphism_quality=50.1	quality=50.1	quality_position_model=2.41643e-48	ref_cov=121/138	tot_cov=135/143
RA	2901	.	NC_007779	4051732	0	T	C	bias_e_value=847331	bias_p_value=0.182366	fisher_strand_p_value=0.0547095	frequency=6.827307e-02	genotype_quality=959.6	ks_quality_p_value=0.809689	log10_base_likelihood=-47.5812	log10_qual_likelihood_position_model=7.93963	log10_strand_likelihood_position_model=1.70638	new_cov=14/5	polymorphism_quality=42.5	quality=42.5	quality_position_model=3.0265e-40	ref_cov=125/134	tot_cov=139/139
RA	2902	.	NC_007779	4051741	0	G	C	bias_e_value=1545800	bias_p_value=0.332693	fisher_strand_p_value=0.105151	frequency=3.962231e-02	genotype_quality=1005.4	ks_quality_p_value=0.961095	log10_base_likelihood=-25.3888	log10_qual_likelihood_position_model=5.62868	log10_strand_likelihood_position_model=1.27676	new_cov=8/2	polymorphism_quality=20.2	quality=20.2	quality_position_model=1.2201e-20	ref_cov=123/119	tot_cov=131/121
RA	2903	.	NC_007779	4051747	0	G	C	bias_e_value=1078730	bias_p_value=0.232168	fisher_strand_p_value=0.0664497	frequency=3.130817e-02	genotype_quality=1018.7	ks_quality_p_value=0.920991	log10_base_likelihood=-19.1677	log10_qual_likelihood_position_model=4.90143	log10_strand_likelihood_position_model=1.47791	new_cov=7/1	polymorphism_quality=13.9	quality=13.9	quality_position_model=7.23188e-15	ref_cov=123/124	reject=POLYMORPHISM_STRAND	tot_cov=130/125
RA	2904	.	NC_007779	4055100	0	G	T	bias_e_value=1.43315e-07	bias_p_value=3.08447e-14	fisher_strand_p_value=8.82677e-16	frequency=1.165524e-01	genotype_quality=714.1	ks_quality_p_value=0.979262	log10_base_likelihood=-33.7794	log10_qual_likelihood_position_model=31.3902	log10_strand_likelihood_position_model=15.0542	new_cov=27/0	polymorphism_quality=28.6	quality=28.6	quality_position_model=Inf	ref_cov=43/147	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=70/147
RA	2905	.	NC_007779	4055329	0	T	G	bias_e_value=1.03095e-06	bias_p_value=2.21885e-13	fisher_strand_p_value=6.59338e-15	frequency=5.587959e-02	genotype_quality=574.2	ks_quality_p_value=1	log10_base_likelihood=-5.91451	log10_qual_likelihood_position_model=21.2643	log10_strand_likelihood_position_model=14.1809	new_cov=16/0	polymorphism_quality=0.4	quality=0.4	quality_position_model=Inf	ref_cov=14/147	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=30/147
RA	2906	.	NC_007779	4059485	0	T	.	bias_e_value=4482480	bias_p_value=0.964734	fisher_strand_p_value=1	frequency=1.940632e-02	genotype_quality=815.9	ks_quality_p_value=0.746458	log10_base_likelihood=-11.3238	log10_qual_likelihood_position_model=2.74721	log10_strand_likelihood_position_model=0.421804	new_cov=2/2	polymorphism_quality=5.9	quality=5.9	quality_position_model=3.86122e-10	ref_cov=100/102	reject=INDEL_HOMOPOLYMER	tot_cov=102/104
RA	2907	.	NC_007779	4062114	0	T	G	bias_e_value=1.72634e-12	bias_p_value=3.71549e-19	fisher_strand_p_value=7.85633e-21	frequency=1.258526e-01	genotype_quality=435.5	ks_quality_p_value=1	log10_base_likelihood=-12.8433	log10_qual_likelihood_position_model=31.6619	log10_strand_likelihood_position_model=20.1048	new_cov=34/0	polymorphism_quality=7.5	quality=7.5	quality_position_model=Inf	ref_cov=22/110	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=57/110
RA	2908	.	NC_007779	4065564	0	C	G	bias_e_value=61.7155	bias_p_value=1.32826e-05	fisher_strand_p_value=8.89505e-07	frequency=6.444025e-02	genotype_quality=603.2	ks_quality_p_value=1	log10_base_likelihood=-11.3451	log10_qual_likelihood_position_model=11.7648	log10_strand_likelihood_position_model=6.05085	new_cov=13/0	polymorphism_quality=5.9	quality=5.9	quality_position_model=Inf	ref_cov=52/113	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=65/113
RA	2909	.	NC_007779	4074542	0	C	A	bias_e_value=0.108371	bias_p_value=2.33239e-08	fisher_strand_p_value=1.0819e-09	frequency=7.672691e-02	genotype_quality=627.8	ks_quality_p_value=0.99582	log10_base_likelihood=-13.9236	log10_qual_likelihood_position_model=22.1083	log10_strand_likelihood_position_model=8.96581	new_cov=0/16	polymorphism_quality=8.6	quality=8.6	quality_position_model=Inf	ref_cov=127/40	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=127/56
RA	2910	.	NC_007779	4076934	0	A	C	bias_e_value=2.22156e-06	bias_p_value=4.78132e-13	fisher_strand_p_value=1.455e-14	frequency=1.364326e-01	genotype_quality=519.7	ks_quality_p_value=1	log10_base_likelihood=-22.0645	log10_qual_likelihood_position_model=24.6293	log10_strand_likelihood_position_model=13.8371	new_cov=0/33	polymorphism_quality=16.8	quality=16.8	quality_position_model=Inf	ref_cov=114/54	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=114/87
RA	2911	.	NC_007779	4078140	0	C	G	bias_e_value=0.00134529	bias_p_value=2.89538e-10	fisher_strand_p_value=1.10386e-11	frequency=7.924366e-02	genotype_quality=642.3	ks_quality_p_value=1	log10_base_likelihood=-12.4316	log10_qual_likelihood_position_model=18.3163	log10_strand_likelihood_position_model=10.9571	new_cov=18/0	polymorphism_quality=7.0	quality=7.0	quality_position_model=Inf	ref_cov=34/132	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=52/132
RA	2912	.	NC_007779	4084209	0	A	G	bias_e_value=0.0175675	bias_p_value=3.78093e-09	fisher_strand_p_value=1.60532e-10	frequency=7.394791e-02	genotype_quality=661.6	ks_quality_p_value=1	log10_base_likelihood=-8.75379	log10_qual_likelihood_position_model=18.3939	log10_strand_likelihood_position_model=9.79444	new_cov=24/0	polymorphism_quality=3.3	quality=3.3	quality_position_model=Inf	ref_cov=70/128	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=94/128
RA	2913	.	NC_007779	4084216	0	C	T	bias_e_value=4444.75	bias_p_value=0.000956614	fisher_strand_p_value=9.30327e-05	frequency=4.090595e-02	genotype_quality=679.1	ks_quality_p_value=1	log10_base_likelihood=-7.48096	log10_qual_likelihood_position_model=12.1159	log10_strand_likelihood_position_model=4.03136	new_cov=10/0	polymorphism_quality=2.0	quality=2.0	quality_position_model=Inf	ref_cov=73/120	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=83/120
RA	2914	.	NC_007779	4090749	0	A	T	frequency=1	genotype_quality=1015.4	new_cov=124/132	quality=1015.4	ref_cov=0/0	tot_cov=124/132
RA	2915	.	NC_007779	4115400	0	T	C	bias_e_value=280.378	bias_p_value=6.0344e-05	fisher_strand_p_value=4.53596e-06	frequency=4.570770e-02	genotype_quality=571.0	ks_quality_p_value=1	log10_base_likelihood=-5.59991	log10_qual_likelihood_position_model=12.0957	log10_strand_likelihood_position_model=5.34333	new_cov=0/11	polymorphism_quality=0.0	quality=0.0	quality_position_model=Inf	ref_cov=111/48	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=111/59
RA	2916	.	NC_007779	4115400	1	.	C	bias_e_value=42121.7	bias_p_value=0.00906557	fisher_strand_p_value=0.00116958	frequency=3.795147e-02	genotype_quality=706.5	ks_quality_p_value=1	log10_base_likelihood=-17.4148	log10_qual_likelihood_position_model=7.5447	log10_strand_likelihood_position_model=2.93197	new_cov=0/6	polymorphism_quality=12.1	quality=12.1	quality_position_model=6.86577e-09	ref_cov=105/47	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=105/53
RA	2917	.	NC_007779	4128670	0	T	.	bias_e_value=4566260	bias_p_value=0.982766	fisher_strand_p_value=1	frequency=1.631355e-02	genotype_quality=947.5	ks_quality_p_value=0.820181	log10_base_likelihood=-10.9859	log10_qual_likelihood_position_model=3.23001	log10_strand_likelihood_position_model=0.423584	new_cov=2/2	polymorphism_quality=5.6	quality=5.6	quality_position_model=2.69865e-09	ref_cov=116/125	reject=INDEL_HOMOPOLYMER	tot_cov=118/127
RA	2918	.	NC_007779	4135339	0	T	C	bias_e_value=10.755	bias_p_value=2.31473e-06	fisher_strand_p_value=1.37803e-07	frequency=7.513571e-02	genotype_quality=603.3	ks_quality_p_value=1	log10_base_likelihood=-8.6706	log10_qual_likelihood_position_model=16.1538	log10_strand_likelihood_position_model=7.16177	new_cov=0/22	polymorphism_quality=3.2	quality=3.2	quality_position_model=Inf	ref_cov=104/82	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=104/104
RA	2919	.	NC_007779	4147012	0	A	C	bias_e_value=0.678688	bias_p_value=1.4607e-07	fisher_strand_p_value=7.40686e-09	frequency=8.044720e-02	genotype_quality=670.6	ks_quality_p_value=1	log10_base_likelihood=-12.7075	log10_qual_likelihood_position_model=22.7946	log10_strand_likelihood_position_model=8.23912	new_cov=0/26	polymorphism_quality=7.3	quality=7.3	quality_position_model=Inf	ref_cov=114/93	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=114/119
RA	2920	.	NC_007779	4147451	0	C	A	bias_e_value=520.088	bias_p_value=0.000111935	fisher_strand_p_value=8.85985e-06	frequency=4.624653e-02	genotype_quality=798.3	ks_quality_p_value=1	log10_base_likelihood=-6.27793	log10_qual_likelihood_position_model=15.9853	log10_strand_likelihood_position_model=5.24532	new_cov=17/0	polymorphism_quality=0.7	quality=0.7	quality_position_model=Inf	ref_cov=110/123	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=127/123
RA	2921	.	NC_007779	4148399	0	A	C	bias_e_value=2.0319e-15	bias_p_value=4.37313e-22	fisher_strand_p_value=8.07245e-24	frequency=1.635098e-01	genotype_quality=450.7	ks_quality_p_value=1	log10_base_likelihood=-19.9292	log10_qual_likelihood_position_model=35.325	log10_strand_likelihood_position_model=23.093	new_cov=0/43	polymorphism_quality=14.6	quality=14.6	quality_position_model=Inf	ref_cov=112/26	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=112/69
RA	2922	.	NC_007779	4153710	0	A	C	bias_e_value=4307040	bias_p_value=0.926976	fisher_strand_p_value=1	frequency=4.958057e-02	genotype_quality=899.1	ks_quality_p_value=0.643047	log10_base_likelihood=-39.2841	log10_qual_likelihood_position_model=5.34064	log10_strand_likelihood_position_model=0.635853	new_cov=6/6	polymorphism_quality=34.1	quality=34.1	quality_position_model=1.36909e-35	ref_cov=116/114	tot_cov=122/120
RA	2923	.	NC_007779	4157323	0	C	A	bias_e_value=426.677	bias_p_value=9.1831e-05	fisher_strand_p_value=7.19394e-06	frequency=5.180025e-02	genotype_quality=717.5	ks_quality_p_value=0.993481	log10_base_likelihood=-8.11458	log10_qual_likelihood_position_model=18.9043	log10_strand_likelihood_position_model=5.14303	new_cov=16/0	polymorphism_quality=2.6	quality=2.6	quality_position_model=Inf	ref_cov=92/110	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=108/110
RA	2924	.	NC_007779	4159514	0	T	G	bias_e_value=1.22436e-06	bias_p_value=2.6351e-13	fisher_strand_p_value=7.87174e-15	frequency=8.294582e-02	genotype_quality=575.3	ks_quality_p_value=1	log10_base_likelihood=-10.2285	log10_qual_likelihood_position_model=26.4294	log10_strand_likelihood_position_model=14.1039	new_cov=36/0	polymorphism_quality=4.8	quality=4.8	quality_position_model=Inf	ref_cov=63/118	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=99/118
RA	2925	.	NC_007779	4165991	0	A	C	frequency=1	genotype_quality=1089.7	new_cov=142/117	quality=1089.7	ref_cov=0/0	tot_cov=142/117
RA	2926	.	NC_007779	4166073	0	A	G	bias_e_value=4383900	bias_p_value=0.943518	fisher_strand_p_value=0.802349	frequency=6.634045e-02	genotype_quality=878.8	ks_quality_p_value=0.851635	log10_base_likelihood=-43.3981	log10_qual_likelihood_position_model=7.81273	log10_strand_likelihood_position_model=0.750285	new_cov=10/7	polymorphism_quality=38.3	quality=38.3	quality_position_model=3.97506e-37	ref_cov=126/113	tot_cov=136/120
RA	2927	.	NC_007779	4166076	0	T	C	bias_e_value=2349460	bias_p_value=0.505658	fisher_strand_p_value=0.802528	frequency=6.507683e-02	genotype_quality=861.5	ks_quality_p_value=0.236842	log10_base_likelihood=-42.7509	log10_qual_likelihood_position_model=7.66602	log10_strand_likelihood_position_model=0.748158	new_cov=10/7	polymorphism_quality=37.6	quality=37.6	quality_position_model=1.26124e-36	ref_cov=129/115	tot_cov=139/122
RA	2928	.	NC_007779	4166098	0	G	A	bias_e_value=2252780	bias_p_value=0.484852	fisher_strand_p_value=0.396081	frequency=9.219980e-02	genotype_quality=882.9	ks_quality_p_value=0.448861	log10_base_likelihood=-60.2173	log10_qual_likelihood_position_model=10.1726	log10_strand_likelihood_position_model=0.949507	new_cov=15/9	polymorphism_quality=55.2	quality=55.2	quality_position_model=1.84293e-51	ref_cov=124/112	tot_cov=139/121
RA	2929	.	NC_007779	4166101	0	A	G	bias_e_value=1047950	bias_p_value=0.225543	fisher_strand_p_value=0.39665	frequency=1.052203e-01	genotype_quality=709.2	ks_quality_p_value=0.148354	log10_base_likelihood=-67.6311	log10_qual_likelihood_position_model=7.77638	log10_strand_likelihood_position_model=0.929254	new_cov=15/9	polymorphism_quality=62.6	quality=62.6	quality_position_model=2.48826e-61	ref_cov=108/96	tot_cov=123/105
RA	2930	.	NC_007779	4166103	0	C	G	bias_e_value=2980120	bias_p_value=0.641392	fisher_strand_p_value=0.39665	frequency=1.052299e-01	genotype_quality=819.8	ks_quality_p_value=0.715792	log10_base_likelihood=-75.4349	log10_qual_likelihood_position_model=12.621	log10_strand_likelihood_position_model=0.929254	new_cov=15/9	polymorphism_quality=70.4	quality=70.4	quality_position_model=2.66782e-64	ref_cov=108/96	tot_cov=123/105
RA	2931	.	NC_007779	4166106	0	G	C	bias_e_value=2365530	bias_p_value=0.509117	fisher_strand_p_value=0.39665	frequency=1.052389e-01	genotype_quality=826.4	ks_quality_p_value=0.484462	log10_base_likelihood=-74.7843	log10_qual_likelihood_position_model=10.0136	log10_strand_likelihood_position_model=0.929254	new_cov=15/9	polymorphism_quality=69.8	quality=69.8	quality_position_model=2.90153e-66	ref_cov=108/96	tot_cov=123/105
RA	2932	.	NC_007779	4166107	0	A	G	bias_e_value=883707	bias_p_value=0.190194	fisher_strand_p_value=0.39665	frequency=1.049600e-01	genotype_quality=715.2	ks_quality_p_value=0.11807	log10_base_likelihood=-65.1989	log10_qual_likelihood_position_model=9.05173	log10_strand_likelihood_position_model=0.929254	new_cov=15/9	polymorphism_quality=60.2	quality=60.2	quality_position_model=1.31054e-57	ref_cov=108/96	tot_cov=123/105
RA	2933	.	NC_007779	4166109	0	C	T	bias_e_value=2119140	bias_p_value=0.45609	fisher_strand_p_value=0.39665	frequency=1.049356e-01	genotype_quality=753.0	ks_quality_p_value=0.407347	log10_base_likelihood=-61.9446	log10_qual_likelihood_position_model=7.97304	log10_strand_likelihood_position_model=0.929254	new_cov=15/9	polymorphism_quality=56.9	quality=56.9	quality_position_model=2.00319e-55	ref_cov=108/96	tot_cov=123/105
RA	2934	.	NC_007779	4166112	0	T	C	bias_e_value=1135080	bias_p_value=0.244295	fisher_strand_p_value=0.394849	frequency=9.231901e-02	genotype_quality=823.4	ks_quality_p_value=0.166129	log10_base_likelihood=-63.5143	log10_qual_likelihood_position_model=8.37991	log10_strand_likelihood_position_model=0.957039	new_cov=15/9	polymorphism_quality=58.5	quality=58.5	quality_position_model=1.4525e-56	ref_cov=123/112	tot_cov=139/121
RA	2935	.	NC_007779	4166115	0	C	T	bias_e_value=3430320	bias_p_value=0.738286	fisher_strand_p_value=0.394849	frequency=9.247589e-02	genotype_quality=877.5	ks_quality_p_value=0.938118	log10_base_likelihood=-55.2013	log10_qual_likelihood_position_model=13.362	log10_strand_likelihood_position_model=0.957039	new_cov=15/9	polymorphism_quality=50.1	quality=50.1	quality_position_model=3.29483e-43	ref_cov=123/112	tot_cov=138/121
RA	2936	.	NC_007779	4166127	0	A	G	bias_e_value=3726370	bias_p_value=0.802003	fisher_strand_p_value=0.53913	frequency=9.916592e-02	genotype_quality=816.7	ks_quality_p_value=0.817875	log10_base_likelihood=-70.7837	log10_qual_likelihood_position_model=8.22465	log10_strand_likelihood_position_model=0.890106	new_cov=15/11	polymorphism_quality=65.8	quality=65.8	quality_position_model=4.39141e-64	ref_cov=119/117	tot_cov=134/128
RA	2937	.	NC_007779	4166142	0	T	C	bias_e_value=1771600	bias_p_value=0.381291	fisher_strand_p_value=0.53533	frequency=1.039720e-01	genotype_quality=774.0	ks_quality_p_value=0.230243	log10_base_likelihood=-73.1556	log10_qual_likelihood_position_model=11.3934	log10_strand_likelihood_position_model=0.91542	new_cov=15/11	polymorphism_quality=68.2	quality=68.2	quality_position_model=2.93529e-63	ref_cov=111/113	tot_cov=126/124
RA	2938	.	NC_007779	4166145	0	T	C	bias_e_value=2740590	bias_p_value=0.589839	fisher_strand_p_value=0.412876	frequency=1.019096e-01	genotype_quality=796.3	ks_quality_p_value=0.593823	log10_base_likelihood=-71.4186	log10_qual_likelihood_position_model=6.32102	log10_strand_likelihood_position_model=0.954147	new_cov=15/11	polymorphism_quality=66.4	quality=66.4	quality_position_model=1.44422e-66	ref_cov=111/118	tot_cov=126/129
RA	2939	.	NC_007779	4166149	0	C	A	bias_e_value=3068150	bias_p_value=0.660339	fisher_strand_p_value=0.527897	frequency=1.040993e-01	genotype_quality=881.0	ks_quality_p_value=0.566952	log10_base_likelihood=-68.4528	log10_qual_likelihood_position_model=9.02791	log10_strand_likelihood_position_model=0.901848	new_cov=14/11	polymorphism_quality=63.4	quality=63.4	quality_position_model=6.30672e-61	ref_cov=103/112	tot_cov=117/123
RA	2940	.	NC_007779	4166151	0	C	G	bias_e_value=1069010	bias_p_value=0.230077	fisher_strand_p_value=0.406624	frequency=1.049786e-01	genotype_quality=827.7	ks_quality_p_value=0.14867	log10_base_likelihood=-79.4539	log10_qual_likelihood_position_model=9.73046	log10_strand_likelihood_position_model=0.93333	new_cov=14/11	polymorphism_quality=74.5	quality=74.5	quality_position_model=3.1468e-71	ref_cov=100/113	tot_cov=114/124
RA	2941	.	NC_007779	4166153	0	C	T	bias_e_value=3310240	bias_p_value=0.712441	fisher_strand_p_value=0.527374	frequency=1.036844e-01	genotype_quality=790.0	ks_quality_p_value=0.654697	log10_base_likelihood=-65.8444	log10_qual_likelihood_position_model=9.4535	log10_strand_likelihood_position_model=0.909068	new_cov=14/11	polymorphism_quality=60.8	quality=60.8	quality_position_model=7.12049e-58	ref_cov=103/113	tot_cov=117/124
RA	2942	.	NC_007779	4166157	0	A	C	bias_e_value=860358	bias_p_value=0.185169	fisher_strand_p_value=0.403669	frequency=9.943962e-02	genotype_quality=807.5	ks_quality_p_value=0.111973	log10_base_likelihood=-86.2316	log10_qual_likelihood_position_model=7.93771	log10_strand_likelihood_position_model=0.953333	new_cov=14/11	polymorphism_quality=81.3	quality=81.3	quality_position_model=8.35858e-80	ref_cov=105/121	tot_cov=119/133
RA	2943	.	NC_007779	4166164	0	G	T	bias_e_value=4457190	bias_p_value=0.959292	fisher_strand_p_value=0.735748	frequency=4.088974e-02	genotype_quality=843.1	ks_quality_p_value=0.990263	log10_base_likelihood=-18.5899	log10_qual_likelihood_position_model=7.50009	log10_strand_likelihood_position_model=0.648116	new_cov=5/4	polymorphism_quality=13.3	quality=13.3	quality_position_model=1.7718e-12	ref_cov=96/114	tot_cov=101/118
RA	2944	.	NC_007779	4166166	0	G	C	bias_e_value=3881650	bias_p_value=0.835422	fisher_strand_p_value=0.736163	frequency=3.836346e-02	genotype_quality=933.0	ks_quality_p_value=0.657834	log10_base_likelihood=-21.8508	log10_qual_likelihood_position_model=6.45009	log10_strand_likelihood_position_model=0.64799	new_cov=5/4	polymorphism_quality=16.6	quality=16.6	quality_position_model=7.32435e-17	ref_cov=103/122	reject=SURROUNDING_HOMOPOLYMER	tot_cov=108/126
RA	2945	.	NC_007779	4166169	0	T	C	bias_e_value=4639590	bias_p_value=0.998549	fisher_strand_p_value=1	frequency=3.080273e-02	genotype_quality=898.2	ks_quality_p_value=0.946623	log10_base_likelihood=-16.3617	log10_qual_likelihood_position_model=3.75123	log10_strand_likelihood_position_model=0.562743	new_cov=4/4	polymorphism_quality=11.0	quality=11.0	quality_position_model=4.0966e-14	ref_cov=109/124	tot_cov=114/128
RA	2946	.	NC_007779	4168068	0	A	G	bias_e_value=2333590	bias_p_value=0.502243	fisher_strand_p_value=0.370467	frequency=1.852798e-02	genotype_quality=1020.7	ks_quality_p_value=0.507526	log10_base_likelihood=-9.7999	log10_qual_likelihood_position_model=4.0298	log10_strand_likelihood_position_model=0.794875	new_cov=4/1	polymorphism_quality=4.4	quality=4.4	quality_position_model=7.3662e-07	ref_cov=132/132	reject=POLYMORPHISM_STRAND	tot_cov=137/133
RA	2947	.	NC_007779	4168072	0	G	A	bias_e_value=2415280	bias_p_value=0.519825	fisher_strand_p_value=0.37043	frequency=1.803780e-02	genotype_quality=1088.4	ks_quality_p_value=0.536461	log10_base_likelihood=-8.73418	log10_qual_likelihood_position_model=4.13033	log10_strand_likelihood_position_model=0.804621	new_cov=4/1	polymorphism_quality=3.3	quality=3.3	quality_position_model=1.25034e-05	ref_cov=134/136	reject=POLYMORPHISM_STRAND	tot_cov=138/137
RA	2948	.	NC_007779	4168073	0	T	C	bias_e_value=190744	bias_p_value=0.0410526	fisher_strand_p_value=0.0602398	frequency=1.447773e-02	genotype_quality=1044.5	ks_quality_p_value=0.113931	log10_base_likelihood=-7.63262	log10_qual_likelihood_position_model=3.80015	log10_strand_likelihood_position_model=1.22012	new_cov=4/0	polymorphism_quality=2.1	quality=2.1	quality_position_model=0.000227379	ref_cov=133/138	reject=POLYMORPHISM_STRAND	tot_cov=137/138
RA	2949	.	NC_007779	4168074	0	A	C	bias_e_value=547555	bias_p_value=0.117847	fisher_strand_p_value=0.122238	frequency=1.469612e-02	genotype_quality=1056.3	ks_quality_p_value=0.205906	log10_base_likelihood=-10.7214	log10_qual_likelihood_position_model=4.01126	log10_strand_likelihood_position_model=1.21383	new_cov=4/0	polymorphism_quality=5.3	quality=5.3	quality_position_model=2.11851e-07	ref_cov=132/136	reject=POLYMORPHISM_STRAND	tot_cov=136/136
RA	2950	.	NC_007779	4168097	0	A	C	bias_e_value=319908	bias_p_value=0.0688517	fisher_strand_p_value=0.0572253	frequency=3.815746e-02	genotype_quality=973.6	ks_quality_p_value=0.224742	log10_base_likelihood=-30.0004	log10_qual_likelihood_position_model=6.06573	log10_strand_likelihood_position_model=1.42129	new_cov=8/2	polymorphism_quality=24.8	quality=24.8	quality_position_model=1.03375e-24	ref_cov=121/131	tot_cov=129/133
RA	2951	.	NC_007779	4168098	0	C	A	bias_e_value=817644	bias_p_value=0.175976	fisher_strand_p_value=0.0562897	frequency=3.841972e-02	genotype_quality=1044.4	ks_quality_p_value=0.750811	log10_base_likelihood=-19.0573	log10_qual_likelihood_position_model=9.16211	log10_strand_likelihood_position_model=1.43281	new_cov=8/2	polymorphism_quality=13.8	quality=13.8	quality_position_model=1.8684e-10	ref_cov=119/130	tot_cov=127/132
RA	2952	.	NC_007779	4168100	0	C	A	bias_e_value=842987	bias_p_value=0.181431	fisher_strand_p_value=0.0547034	frequency=3.842831e-02	genotype_quality=1049.3	ks_quality_p_value=0.8043	log10_base_likelihood=-18.7637	log10_qual_likelihood_position_model=9.88861	log10_strand_likelihood_position_model=1.45448	new_cov=8/2	polymorphism_quality=13.5	quality=13.5	quality_position_model=2.1897e-09	ref_cov=118/131	tot_cov=126/133
RA	2953	.	NC_007779	4168107	0	G	T	bias_e_value=1962550	bias_p_value=0.422388	fisher_strand_p_value=0.216658	frequency=3.943253e-02	genotype_quality=1009.7	ks_quality_p_value=0.663032	log10_base_likelihood=-22.8833	log10_qual_likelihood_position_model=10.5533	log10_strand_likelihood_position_model=1.0802	new_cov=8/3	polymorphism_quality=17.6	quality=17.6	quality_position_model=2.65888e-13	ref_cov=121/123	tot_cov=129/126
RA	2954	.	NC_007779	4168110	0	G	A	bias_e_value=1052180	bias_p_value=0.226453	fisher_strand_p_value=0.0592328	frequency=3.642559e-02	genotype_quality=1060.4	ks_quality_p_value=0.998878	log10_base_likelihood=-18.8394	log10_qual_likelihood_position_model=7.68911	log10_strand_likelihood_position_model=1.39864	new_cov=8/2	polymorphism_quality=13.5	quality=13.5	quality_position_model=8.96853e-12	ref_cov=127/135	tot_cov=135/138
RA	2955	.	NC_007779	4168114	0	A	G	bias_e_value=1233970	bias_p_value=0.26558	fisher_strand_p_value=0.102984	frequency=3.624249e-02	genotype_quality=1017.4	ks_quality_p_value=0.714486	log10_base_likelihood=-21.9638	log10_qual_likelihood_position_model=7.47821	log10_strand_likelihood_position_model=1.36868	new_cov=8/2	polymorphism_quality=16.7	quality=16.7	quality_position_model=3.35247e-15	ref_cov=130/135	tot_cov=138/137
RA	2956	.	NC_007779	4168122	0	A	G	bias_e_value=978626	bias_p_value=0.210623	fisher_strand_p_value=0.0542315	frequency=3.745747e-02	genotype_quality=964.3	ks_quality_p_value=0.989482	log10_base_likelihood=-21.1494	log10_qual_likelihood_position_model=7.0131	log10_strand_likelihood_position_model=1.46241	new_cov=8/2	polymorphism_quality=15.9	quality=15.9	quality_position_model=9.45404e-15	ref_cov=121/135	tot_cov=129/137
RA	2957	.	NC_007779	4168123	0	C	T	bias_e_value=1498190	bias_p_value=0.322446	fisher_strand_p_value=0.0968614	frequency=3.349686e-02	genotype_quality=1047.5	ks_quality_p_value=0.997633	log10_base_likelihood=-15.8208	log10_qual_likelihood_position_model=8.10332	log10_strand_likelihood_position_model=1.2181	new_cov=7/2	polymorphism_quality=10.5	quality=10.5	quality_position_model=1.94458e-08	ref_cov=123/134	tot_cov=130/136
RA	2958	.	NC_007779	4168124	0	G	C	bias_e_value=1491360	bias_p_value=0.320975	fisher_strand_p_value=0.0989525	frequency=3.426743e-02	genotype_quality=1064.8	ks_quality_p_value=0.970197	log10_base_likelihood=-21.7429	log10_qual_likelihood_position_model=6.60846	log10_strand_likelihood_position_model=1.20144	new_cov=7/2	polymorphism_quality=16.5	quality=16.5	quality_position_model=4.97231e-16	ref_cov=122/131	tot_cov=129/133
RA	2959	.	NC_007779	4168125	0	T	C	bias_e_value=1392390	bias_p_value=0.299676	fisher_strand_p_value=0.0988748	frequency=3.454304e-02	genotype_quality=951.4	ks_quality_p_value=0.880875	log10_base_likelihood=-20.4566	log10_qual_likelihood_position_model=4.82122	log10_strand_likelihood_position_model=1.20183	new_cov=7/2	polymorphism_quality=15.2	quality=15.2	quality_position_model=1.54369e-16	ref_cov=121/130	tot_cov=128/132
RA	2960	.	NC_007779	4168129	0	G	T	bias_e_value=1487320	bias_p_value=0.320106	fisher_strand_p_value=0.0984682	frequency=3.581047e-02	genotype_quality=1009.7	ks_quality_p_value=0.971207	log10_base_likelihood=-20.5932	log10_qual_likelihood_position_model=6.69362	log10_strand_likelihood_position_model=1.20388	new_cov=7/2	polymorphism_quality=15.3	quality=15.3	quality_position_model=8.98331e-15	ref_cov=116/125	tot_cov=123/127
RA	2961	.	NC_007779	4168130	0	A	C	bias_e_value=1488020	bias_p_value=0.320257	fisher_strand_p_value=0.098552	frequency=3.570938e-02	genotype_quality=959.5	ks_quality_p_value=0.971033	log10_base_likelihood=-26.3804	log10_qual_likelihood_position_model=6.93526	log10_strand_likelihood_position_model=1.20345	new_cov=7/2	polymorphism_quality=21.2	quality=21.2	quality_position_model=2.1422e-20	ref_cov=117/126	tot_cov=124/128
RA	2962	.	NC_007779	4168131	0	A	C	bias_e_value=1026590	bias_p_value=0.220947	fisher_strand_p_value=0.098552	frequency=3.569889e-02	genotype_quality=958.4	ks_quality_p_value=0.58071	log10_base_likelihood=-26.944	log10_qual_likelihood_position_model=5.4808	log10_strand_likelihood_position_model=1.20345	new_cov=7/2	polymorphism_quality=21.7	quality=21.7	quality_position_model=1.95208e-22	ref_cov=117/126	tot_cov=124/128
RA	2963	.	NC_007779	4168137	0	T	G	bias_e_value=1493580	bias_p_value=0.321454	fisher_strand_p_value=0.100734	frequency=3.717422e-02	genotype_quality=918.0	ks_quality_p_value=0.955072	log10_base_likelihood=-26.408	log10_qual_likelihood_position_model=6.38862	log10_strand_likelihood_position_model=1.18666	new_cov=7/2	polymorphism_quality=21.2	quality=21.2	quality_position_model=5.40823e-21	ref_cov=113/120	tot_cov=120/122
RA	2964	.	NC_007779	4168140	0	G	T	bias_e_value=2201670	bias_p_value=0.473852	fisher_strand_p_value=0.171536	frequency=3.694725e-02	genotype_quality=979.7	ks_quality_p_value=0.999683	log10_base_likelihood=-21.2506	log10_qual_likelihood_position_model=7.20596	log10_strand_likelihood_position_model=1.15868	new_cov=7/2	polymorphism_quality=16.0	quality=16.0	quality_position_model=5.75515e-15	ref_cov=115/119	tot_cov=122/121
RA	2965	.	NC_007779	4168146	0	A	T	bias_e_value=2200000	bias_p_value=0.473492	fisher_strand_p_value=0.171328	frequency=3.343773e-02	genotype_quality=914.3	ks_quality_p_value=0.999705	log10_base_likelihood=-16.3882	log10_qual_likelihood_position_model=8.58127	log10_strand_likelihood_position_model=0.976334	new_cov=6/2	polymorphism_quality=11.1	quality=11.1	quality_position_model=8.85987e-09	ref_cov=112/117	tot_cov=119/119
RA	2966	.	NC_007779	4168153	0	A	G	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=2.015972e-02	genotype_quality=930.8	ks_quality_p_value=1	log10_base_likelihood=-8.93898	log10_qual_likelihood_position_model=3.74912	log10_strand_likelihood_position_model=0.494539	new_cov=3/2	polymorphism_quality=3.5	quality=3.5	quality_position_model=1.44139e-06	ref_cov=120/117	tot_cov=123/119
RA	2967	.	NC_007779	4168155	0	C	T	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=2.036572e-02	genotype_quality=954.0	ks_quality_p_value=0.999815	log10_base_likelihood=-8.52329	log10_qual_likelihood_position_model=3.37334	log10_strand_likelihood_position_model=0.483148	new_cov=3/2	polymorphism_quality=3.1	quality=3.1	quality_position_model=1.54356e-06	ref_cov=120/110	tot_cov=123/112
RA	2968	.	NC_007779	4168158	0	A	T	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=2.125931e-02	genotype_quality=905.2	ks_quality_p_value=0.999805	log10_base_likelihood=-9.2186	log10_qual_likelihood_position_model=5.23433	log10_strand_likelihood_position_model=0.477071	new_cov=3/2	polymorphism_quality=3.8	quality=3.8	quality_position_model=2.53986e-05	ref_cov=119/105	tot_cov=122/107
RA	2969	.	NC_007779	4168159	0	G	A	bias_e_value=4646330	bias_p_value=1	fisher_strand_p_value=1	frequency=2.064991e-02	genotype_quality=923.2	ks_quality_p_value=0.999214	log10_base_likelihood=-7.26691	log10_qual_likelihood_position_model=4.67371	log10_strand_likelihood_position_model=0.475678	new_cov=3/2	polymorphism_quality=1.8	quality=1.8	quality_position_model=0.000778821	ref_cov=119/104	reject=EVALUE	tot_cov=122/106
RA	2970	.	NC_007779	4168164	0	A	G	bias_e_value=4644630	bias_p_value=0.999633	fisher_strand_p_value=1	frequency=2.139854e-02	genotype_quality=877.1	ks_quality_p_value=0.973027	log10_base_likelihood=-9.40726	log10_qual_likelihood_position_model=4.79272	log10_strand_likelihood_position_model=0.478698	new_cov=3/2	polymorphism_quality=4.0	quality=4.0	quality_position_model=5.54113e-06	ref_cov=120/107	tot_cov=123/109
RA	2971	.	NC_007779	4168171	0	A	T	bias_e_value=3897790	bias_p_value=0.838896	fisher_strand_p_value=0.592126	frequency=1.378822e-02	genotype_quality=843.1	ks_quality_p_value=0.826	log10_base_likelihood=-6.84891	log10_qual_likelihood_position_model=1.72561	log10_strand_likelihood_position_model=0.469386	new_cov=1/2	polymorphism_quality=1.3	quality=1.3	quality_position_model=1.59206e-06	ref_cov=119/98	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=121/100
RA	2972	.	NC_007779	4168290	0	A	G	bias_e_value=1761950	bias_p_value=0.379213	fisher_strand_p_value=1	frequency=7.774591e-02	genotype_quality=886.6	ks_quality_p_value=0.122265	log10_base_likelihood=-57.0237	log10_qual_likelihood_position_model=7.26738	log10_strand_likelihood_position_model=0.751653	new_cov=11/10	polymorphism_quality=52.0	quality=52.0	quality_position_model=2.27201e-51	ref_cov=126/123	tot_cov=137/133
RA	2973	.	NC_007779	4168293	0	G	C	bias_e_value=4208160	bias_p_value=0.905696	fisher_strand_p_value=1	frequency=7.690668e-02	genotype_quality=1039.0	ks_quality_p_value=0.598439	log10_base_likelihood=-63.2636	log10_qual_likelihood_position_model=10.2008	log10_strand_likelihood_position_model=0.748921	new_cov=11/10	polymorphism_quality=58.2	quality=58.2	quality_position_model=1.0793e-54	ref_cov=129/123	tot_cov=140/133
RA	2974	.	NC_007779	4168303	0	A	G	bias_e_value=708310	bias_p_value=0.152445	fisher_strand_p_value=0.432625	frequency=1.073818e-01	genotype_quality=824.0	ks_quality_p_value=0.0809779	log10_base_likelihood=-83.7448	log10_qual_likelihood_position_model=10.0612	log10_strand_likelihood_position_model=0.994982	new_cov=17/12	polymorphism_quality=78.8	quality=78.8	quality_position_model=3.86813e-75	ref_cov=119/122	tot_cov=136/134
RA	2975	.	NC_007779	4168306	0	A	C	bias_e_value=2754310	bias_p_value=0.592793	fisher_strand_p_value=0.432419	frequency=1.070318e-01	genotype_quality=857.7	ks_quality_p_value=0.571861	log10_base_likelihood=-103.896	log10_qual_likelihood_position_model=6.95856	log10_strand_likelihood_position_model=1.00371	new_cov=17/12	polymorphism_quality=99.0	quality=99.0	quality_position_model=1.91605e-98	ref_cov=119/123	tot_cov=136/135
RA	2976	.	NC_007779	4168308	0	C	G	bias_e_value=1174400	bias_p_value=0.252759	fisher_strand_p_value=0.432824	frequency=1.065998e-01	genotype_quality=978.2	ks_quality_p_value=0.158794	log10_base_likelihood=-96.4146	log10_qual_likelihood_position_model=7.53303	log10_strand_likelihood_position_model=0.995131	new_cov=17/12	polymorphism_quality=91.5	quality=91.5	quality_position_model=2.23171e-90	ref_cov=120/123	tot_cov=137/135
RA	2977	.	NC_007779	4168317	0	T	C	bias_e_value=1201460	bias_p_value=0.258583	fisher_strand_p_value=0.328231	frequency=1.027746e-01	genotype_quality=853.9	ks_quality_p_value=0.216061	log10_base_likelihood=-81.7563	log10_qual_likelihood_position_model=10.2103	log10_strand_likelihood_position_model=1.06707	new_cov=17/12	polymorphism_quality=76.8	quality=76.8	quality_position_model=6.36498e-73	ref_cov=121/132	tot_cov=138/144
RA	2978	.	NC_007779	4168329	0	A	G	bias_e_value=3446570	bias_p_value=0.741784	fisher_strand_p_value=0.433974	frequency=1.038995e-01	genotype_quality=877.1	ks_quality_p_value=0.861698	log10_base_likelihood=-81.8185	log10_qual_likelihood_position_model=7.31689	log10_strand_likelihood_position_model=0.98743	new_cov=17/12	polymorphism_quality=76.8	quality=76.8	quality_position_model=5.74732e-76	ref_cov=124/126	tot_cov=141/138
RA	2979	.	NC_007779	4168335	0	C	G	bias_e_value=2917710	bias_p_value=0.62796	fisher_strand_p_value=0.435167	frequency=9.896803e-02	genotype_quality=1074.6	ks_quality_p_value=0.628282	log10_base_likelihood=-93.0526	log10_qual_likelihood_position_model=8.34621	log10_strand_likelihood_position_model=0.988776	new_cov=17/12	polymorphism_quality=88.1	quality=88.1	quality_position_model=3.37258e-86	ref_cov=131/133	tot_cov=148/145
RA	2980	.	NC_007779	4168338	0	T	C	bias_e_value=3393590	bias_p_value=0.73038	fisher_strand_p_value=0.435381	frequency=1.006308e-01	genotype_quality=911.7	ks_quality_p_value=0.832695	log10_base_likelihood=-79.9702	log10_qual_likelihood_position_model=7.55474	log10_strand_likelihood_position_model=0.980545	new_cov=17/12	polymorphism_quality=75.0	quality=75.0	quality_position_model=6.99716e-74	ref_cov=129/130	tot_cov=146/142
RA	2981	.	NC_007779	4168344	0	G	A	bias_e_value=2458800	bias_p_value=0.529191	fisher_strand_p_value=0.332753	frequency=9.825754e-02	genotype_quality=985.6	ks_quality_p_value=0.61478	log10_base_likelihood=-75.3646	log10_qual_likelihood_position_model=7.06245	log10_strand_likelihood_position_model=1.03776	new_cov=17/12	polymorphism_quality=70.4	quality=70.4	quality_position_model=1.06765e-69	ref_cov=129/137	tot_cov=146/149
RA	2982	.	NC_007779	4168348	0	G	A	bias_e_value=3261460	bias_p_value=0.701943	fisher_strand_p_value=0.439049	frequency=9.622288e-02	genotype_quality=1020.6	ks_quality_p_value=0.764218	log10_base_likelihood=-73.273	log10_qual_likelihood_position_model=11.2362	log10_strand_likelihood_position_model=0.960722	new_cov=17/12	polymorphism_quality=68.3	quality=68.3	quality_position_model=1.72804e-63	ref_cov=137/135	tot_cov=154/147
RA	2983	.	NC_007779	4168350	0	A	C	bias_e_value=3219170	bias_p_value=0.692841	fisher_strand_p_value=0.558437	frequency=9.571791e-02	genotype_quality=979.3	ks_quality_p_value=0.586078	log10_base_likelihood=-101.557	log10_qual_likelihood_position_model=7.82429	log10_strand_likelihood_position_model=0.934908	new_cov=17/12	polymorphism_quality=96.6	quality=96.6	quality_position_model=2.66393e-95	ref_cov=140/134	tot_cov=157/146
RA	2984	.	NC_007779	4168356	0	A	C	bias_e_value=1279320	bias_p_value=0.27534	fisher_strand_p_value=0.568708	frequency=9.972191e-02	genotype_quality=924.2	ks_quality_p_value=0.136023	log10_base_likelihood=-102.137	log10_qual_likelihood_position_model=12.2563	log10_strand_likelihood_position_model=0.895255	new_cov=17/13	polymorphism_quality=97.2	quality=97.2	quality_position_model=1.76583e-91	ref_cov=134/130	tot_cov=151/143
RA	2985	.	NC_007779	4168374	0	T	C	bias_e_value=2122400	bias_p_value=0.456791	fisher_strand_p_value=0.209545	frequency=8.256197e-02	genotype_quality=980.1	ks_quality_p_value=0.772908	log10_base_likelihood=-65.4255	log10_qual_likelihood_position_model=9.29831	log10_strand_likelihood_position_model=1.23503	new_cov=16/9	polymorphism_quality=60.4	quality=60.4	quality_position_model=2.78286e-57	ref_cov=135/142	tot_cov=151/151
RA	2986	.	NC_007779	4168377	0	A	G	bias_e_value=2779730	bias_p_value=0.598263	fisher_strand_p_value=0.488293	frequency=6.392002e-02	genotype_quality=1008.6	ks_quality_p_value=0.514488	log10_base_likelihood=-47.9032	log10_qual_likelihood_position_model=7.67326	log10_strand_likelihood_position_model=0.838545	new_cov=11/8	polymorphism_quality=42.8	quality=42.8	quality_position_model=1.03906e-41	ref_cov=137/141	tot_cov=148/149
RA	2987	.	NC_007779	4168380	0	T	C	bias_e_value=4218700	bias_p_value=0.907964	fisher_strand_p_value=0.618912	frequency=5.599117e-02	genotype_quality=1059.3	ks_quality_p_value=0.974111	log10_base_likelihood=-40.5424	log10_qual_likelihood_position_model=7.9138	log10_strand_likelihood_position_model=0.81843	new_cov=10/7	polymorphism_quality=35.4	quality=35.4	quality_position_model=4.40283e-34	ref_cov=142/144	tot_cov=152/151
RA	2988	.	NC_007779	4168387	0	C	A	bias_e_value=4416640	bias_p_value=0.950564	fisher_strand_p_value=0.723021	frequency=2.776337e-02	genotype_quality=1165.5	ks_quality_p_value=0.971636	log10_base_likelihood=-16.1787	log10_qual_likelihood_position_model=6.23559	log10_strand_likelihood_position_model=0.642053	new_cov=5/3	polymorphism_quality=10.8	quality=10.8	quality_position_model=2.58926e-11	ref_cov=141/138	tot_cov=146/141
RA	2989	.	NC_007779	4169293	0	A	G	bias_e_value=716385	bias_p_value=0.154183	fisher_strand_p_value=0.0389401	frequency=8.969116e-02	genotype_quality=236.1	ks_quality_p_value=0.913011	log10_base_likelihood=-18.8142	log10_qual_likelihood_position_model=2.28928	log10_strand_likelihood_position_model=1.64977	new_cov=1/6	polymorphism_quality=13.5	quality=13.5	quality_position_model=5.50303e-17	ref_cov=43/28	reject=POLYMORPHISM_STRAND	tot_cov=44/34
RA	2990	.	NC_007779	4169297	0	G	C	bias_e_value=781543	bias_p_value=0.168207	fisher_strand_p_value=0.0421622	frequency=8.533621e-02	genotype_quality=258.4	ks_quality_p_value=0.944679	log10_base_likelihood=-21.6587	log10_qual_likelihood_position_model=3.2043	log10_strand_likelihood_position_model=1.56039	new_cov=1/6	polymorphism_quality=16.4	quality=16.4	quality_position_model=4.95238e-19	ref_cov=44/31	reject=POLYMORPHISM_STRAND	tot_cov=45/37
RA	2991	.	NC_007779	4169299	0	C	G	bias_e_value=684908	bias_p_value=0.147408	fisher_strand_p_value=0.0411614	frequency=8.971596e-02	genotype_quality=240.0	ks_quality_p_value=0.814837	log10_base_likelihood=-21.3008	log10_qual_likelihood_position_model=2.74821	log10_strand_likelihood_position_model=1.57809	new_cov=1/6	polymorphism_quality=16.0	quality=16.0	quality_position_model=4.10499e-19	ref_cov=42/29	reject=POLYMORPHISM_STRAND	tot_cov=43/35
RA	2992	.	NC_007779	4169303	0	C	G	bias_e_value=611507	bias_p_value=0.131611	fisher_strand_p_value=0.0396849	frequency=9.091330e-02	genotype_quality=238.1	ks_quality_p_value=0.73031	log10_base_likelihood=-21.4916	log10_qual_likelihood_position_model=3.40366	log10_strand_likelihood_position_model=1.61892	new_cov=1/6	polymorphism_quality=16.2	quality=16.2	quality_position_model=1.33412e-18	ref_cov=42/28	reject=POLYMORPHISM_STRAND	tot_cov=43/34
RA	2993	.	NC_007779	4169304	0	C	A	bias_e_value=754999	bias_p_value=0.162494	fisher_strand_p_value=0.0396849	frequency=9.093952e-02	genotype_quality=238.4	ks_quality_p_value=0.959293	log10_base_likelihood=-21.586	log10_qual_likelihood_position_model=4.30643	log10_strand_likelihood_position_model=1.61892	new_cov=1/6	polymorphism_quality=16.3	quality=16.3	quality_position_model=8.79468e-18	ref_cov=42/28	reject=POLYMORPHISM_STRAND	tot_cov=43/34
RA	2994	.	NC_007779	4169307	0	C	A	bias_e_value=679144	bias_p_value=0.146168	fisher_strand_p_value=0.0383782	frequency=8.532238e-02	genotype_quality=256.4	ks_quality_p_value=0.864425	log10_base_likelihood=-21.638	log10_qual_likelihood_position_model=2.3804	log10_strand_likelihood_position_model=1.69753	new_cov=1/6	polymorphism_quality=16.4	quality=16.4	quality_position_model=1.04846e-19	ref_cov=46/29	reject=POLYMORPHISM_STRAND	tot_cov=47/35
RA	2995	.	NC_007779	4169308	0	C	G	bias_e_value=747855	bias_p_value=0.160956	fisher_strand_p_value=0.0383782	frequency=8.532953e-02	genotype_quality=255.6	ks_quality_p_value=0.979721	log10_base_likelihood=-20.4764	log10_qual_likelihood_position_model=3.10056	log10_strand_likelihood_position_model=1.69753	new_cov=1/6	polymorphism_quality=15.2	quality=15.2	quality_position_model=8.43955e-18	ref_cov=46/29	reject=POLYMORPHISM_STRAND	tot_cov=47/35
RA	2996	.	NC_007779	4169320	0	A	T	bias_e_value=4140050	bias_p_value=0.891037	fisher_strand_p_value=0.630618	frequency=2.291393e-01	genotype_quality=248.1	ks_quality_p_value=0.905653	log10_base_likelihood=-71.9917	log10_qual_likelihood_position_model=10.0131	log10_strand_likelihood_position_model=0.793199	new_cov=10/12	polymorphism_quality=67.0	quality=67.0	quality_position_model=1.34221e-63	ref_cov=39/35	tot_cov=49/47
RA	2997	.	NC_007779	4169326	0	A	C	bias_e_value=4284650	bias_p_value=0.922157	fisher_strand_p_value=0.632336	frequency=2.135639e-01	genotype_quality=265.2	ks_quality_p_value=1	log10_base_likelihood=-79.6534	log10_qual_likelihood_position_model=7.04196	log10_strand_likelihood_position_model=0.807551	new_cov=10/12	polymorphism_quality=74.7	quality=74.7	quality_position_model=2.98424e-74	ref_cov=43/38	tot_cov=53/50
RA	2998	.	NC_007779	4169330	0	T	G	bias_e_value=1752190	bias_p_value=0.377112	fisher_strand_p_value=0.123041	frequency=1.640539e-01	genotype_quality=301.2	ks_quality_p_value=0.985587	log10_base_likelihood=-62.8073	log10_qual_likelihood_position_model=7.5278	log10_strand_likelihood_position_model=1.28459	new_cov=6/12	polymorphism_quality=57.8	quality=57.8	quality_position_model=2.21455e-56	ref_cov=50/41	tot_cov=60/53
RA	2999	.	NC_007779	4169331	0	G	C	bias_e_value=1699860	bias_p_value=0.365851	fisher_strand_p_value=0.122131	frequency=1.565008e-01	genotype_quality=322.6	ks_quality_p_value=0.949674	log10_base_likelihood=-57.1104	log10_qual_likelihood_position_model=8.05547	log10_strand_likelihood_position_model=1.33493	new_cov=6/12	polymorphism_quality=52.1	quality=52.1	quality_position_model=4.43408e-50	ref_cov=54/43	tot_cov=60/55
RA	3000	.	NC_007779	4169332	0	C	T	bias_e_value=1734000	bias_p_value=0.373197	fisher_strand_p_value=0.122806	frequency=1.536417e-01	genotype_quality=321.1	ks_quality_p_value=0.972416	log10_base_likelihood=-43.055	log10_qual_likelihood_position_model=10.4511	log10_strand_likelihood_position_model=1.33102	new_cov=6/12	polymorphism_quality=37.9	quality=37.9	quality_position_model=1.53003e-33	ref_cov=55/44	tot_cov=61/56
RA	3001	.	NC_007779	4169332	1	.	T	bias_e_value=16543.7	bias_p_value=0.00356059	fisher_strand_p_value=0.119933	frequency=3.418827e-02	genotype_quality=354.1	ks_quality_p_value=0.00336823	log10_base_likelihood=-18.3273	log10_qual_likelihood_position_model=3.18474	log10_strand_likelihood_position_model=1.15249	new_cov=4/0	polymorphism_quality=13.0	quality=13.0	quality_position_model=4.35132e-16	ref_cov=57/56	reject=POLYMORPHISM_STRAND	tot_cov=61/56
RA	3002	.	NC_007779	4169338	0	G	C	bias_e_value=1650440	bias_p_value=0.355213	fisher_strand_p_value=0.58547	frequency=2.957821e-01	genotype_quality=330.5	ks_quality_p_value=0.189754	log10_base_likelihood=-151.351	log10_qual_likelihood_position_model=10.7721	log10_strand_likelihood_position_model=0.909793	new_cov=20/22	polymorphism_quality=146.5	quality=146.5	quality_position_model=2.92248e-142	ref_cov=53/47	tot_cov=73/69
RA	3003	.	NC_007779	4169350	0	T	C	bias_e_value=3961330	bias_p_value=0.852572	fisher_strand_p_value=0.549501	frequency=3.172803e-01	genotype_quality=440.5	ks_quality_p_value=0.925866	log10_base_likelihood=-219.577	log10_qual_likelihood_position_model=8.93538	log10_strand_likelihood_position_model=1.00778	new_cov=36/30	polymorphism_quality=214.8	quality=214.8	quality_position_model=2.58867e-212	ref_cov=84/58	tot_cov=120/88
RA	3004	.	NC_007779	4169351	0	G	A	bias_e_value=3754110	bias_p_value=0.807973	fisher_strand_p_value=0.548546	frequency=3.111973e-01	genotype_quality=464.1	ks_quality_p_value=0.817263	log10_base_likelihood=-205.655	log10_qual_likelihood_position_model=9.60745	log10_strand_likelihood_position_model=1.02719	new_cov=36/30	polymorphism_quality=200.9	quality=200.9	quality_position_model=1.10209e-197	ref_cov=87/59	tot_cov=123/89
RA	3005	.	NC_007779	4169353	0	T	C	bias_e_value=3324820	bias_p_value=0.715579	fisher_strand_p_value=0.456535	frequency=3.084073e-01	genotype_quality=456.9	ks_quality_p_value=0.762776	log10_base_likelihood=-220.005	log10_qual_likelihood_position_model=11.788	log10_strand_likelihood_position_model=1.05195	new_cov=36/30	polymorphism_quality=215.2	quality=215.2	quality_position_model=7.66312e-210	ref_cov=89/59	tot_cov=125/89
RA	3006	.	NC_007779	4169356	0	A	G	bias_e_value=4006040	bias_p_value=0.862195	fisher_strand_p_value=0.55259	frequency=3.027449e-01	genotype_quality=471.8	ks_quality_p_value=0.94701	log10_base_likelihood=-216.263	log10_qual_likelihood_position_model=13.0871	log10_strand_likelihood_position_model=1.01633	new_cov=36/30	polymorphism_quality=211.5	quality=211.5	quality_position_model=7.85644e-205	ref_cov=90/62	tot_cov=126/92
RA	3007	.	NC_007779	4169395	0	C	T	bias_e_value=3723250	bias_p_value=0.80133	fisher_strand_p_value=0.447219	frequency=3.539553e-01	genotype_quality=566.4	ks_quality_p_value=0.984127	log10_base_likelihood=-304.569	log10_qual_likelihood_position_model=14.8788	log10_strand_likelihood_position_model=1.15676	new_cov=49/48	polymorphism_quality=299.9	quality=299.9	quality_position_model=2.78122e-291	ref_cov=99/78	tot_cov=148/126
RA	3008	.	NC_007779	4169401	0	A	T	bias_e_value=3720980	bias_p_value=0.800842	fisher_strand_p_value=0.440862	frequency=3.558636e-01	genotype_quality=558.3	ks_quality_p_value=0.996971	log10_base_likelihood=-334.751	log10_qual_likelihood_position_model=15.071	log10_strand_likelihood_position_model=1.13693	new_cov=47/47	polymorphism_quality=inf	quality=inf	quality_position_model=2.58890398420813e-321	ref_cov=94/76	tot_cov=141/123
RA	3009	.	NC_007779	4169404	0	T	C	bias_e_value=3646670	bias_p_value=0.784849	fisher_strand_p_value=0.420575	frequency=3.551774e-01	genotype_quality=486.3	ks_quality_p_value=1	log10_base_likelihood=-284.461	log10_qual_likelihood_position_model=16.2577	log10_strand_likelihood_position_model=1.13079	new_cov=43/43	polymorphism_quality=279.8	quality=279.8	quality_position_model=8.35413e-270	ref_cov=87/69	tot_cov=130/112
RA	3010	.	NC_007779	4169407	0	T	C	bias_e_value=3382060	bias_p_value=0.727898	fisher_strand_p_value=0.420575	frequency=3.553829e-01	genotype_quality=487.8	ks_quality_p_value=0.856211	log10_base_likelihood=-284.902	log10_qual_likelihood_position_model=13.8748	log10_strand_likelihood_position_model=1.13079	new_cov=43/43	polymorphism_quality=280.2	quality=280.2	quality_position_model=1.24663e-272	ref_cov=87/69	tot_cov=130/112
RA	3011	.	NC_007779	4169410	0	G	T	bias_e_value=3570160	bias_p_value=0.768382	fisher_strand_p_value=0.419239	frequency=3.582902e-01	genotype_quality=513.5	ks_quality_p_value=0.958982	log10_base_likelihood=-290.84	log10_qual_likelihood_position_model=18.8388	log10_strand_likelihood_position_model=1.1332	new_cov=43/43	polymorphism_quality=286.1	quality=286.1	quality_position_model=1.32849e-273	ref_cov=86/68	tot_cov=129/111
RA	3012	.	NC_007779	4169413	0	T	C	bias_e_value=2052950	bias_p_value=0.441843	fisher_strand_p_value=0.268624	frequency=3.580608e-01	genotype_quality=456.6	ks_quality_p_value=0.572773	log10_base_likelihood=-273.566	log10_qual_likelihood_position_model=10.1802	log10_strand_likelihood_position_model=1.27877	new_cov=40/42	polymorphism_quality=268.8	quality=268.8	quality_position_model=7.78867e-265	ref_cov=84/63	tot_cov=124/105
RA	3013	.	NC_007779	4169419	0	C	T	bias_e_value=3214320	bias_p_value=0.691797	fisher_strand_p_value=0.329158	frequency=3.676033e-01	genotype_quality=440.6	ks_quality_p_value=0.991484	log10_base_likelihood=-244.913	log10_qual_likelihood_position_model=18.2274	log10_strand_likelihood_position_model=1.20575	new_cov=41/41	polymorphism_quality=240.2	quality=240.2	quality_position_model=3.55835e-228	ref_cov=81/60	tot_cov=122/101
RA	3014	.	NC_007779	4169434	0	T	C	bias_e_value=286934	bias_p_value=0.0617549	fisher_strand_p_value=0.207035	frequency=3.464484e-01	genotype_quality=360.5	ks_quality_p_value=0.054362	log10_base_likelihood=-205.394	log10_qual_likelihood_position_model=15.8893	log10_strand_likelihood_position_model=1.29734	new_cov=30/32	polymorphism_quality=200.6	quality=200.6	quality_position_model=7.29379e-191	ref_cov=69/48	reject=SURROUNDING_HOMOPOLYMER	tot_cov=99/80
RA	3015	.	NC_007779	4169444	0	A	G	bias_e_value=19460.1	bias_p_value=0.00418827	fisher_strand_p_value=0.0563126	frequency=2.976027e-01	genotype_quality=299.1	ks_quality_p_value=0.00861743	log10_base_likelihood=-127.06	log10_qual_likelihood_position_model=10.806	log10_strand_likelihood_position_model=1.68163	new_cov=15/24	polymorphism_quality=122.2	quality=122.2	quality_position_model=4.03074e-117	ref_cov=53/39	tot_cov=68/63
RA	3016	.	NC_007779	4169446	0	C	T	bias_e_value=1220520	bias_p_value=0.262685	fisher_strand_p_value=0.179021	frequency=3.248458e-01	genotype_quality=264.4	ks_quality_p_value=0.404836	log10_base_likelihood=-119.833	log10_qual_likelihood_position_model=9.3477	log10_strand_likelihood_position_model=1.21408	new_cov=15/24	polymorphism_quality=114.9	quality=114.9	quality_position_model=8.25604e-112	ref_cov=42/39	tot_cov=57/63
RA	3017	.	NC_007779	4169449	0	G	C	bias_e_value=1193550	bias_p_value=0.25688	fisher_strand_p_value=0.423464	frequency=3.545399e-01	genotype_quality=235.5	ks_quality_p_value=0.165954	log10_base_likelihood=-149.975	log10_qual_likelihood_position_model=5.9014	log10_strand_likelihood_position_model=0.990166	new_cov=15/24	polymorphism_quality=145.1	quality=145.1	quality_position_model=1.11229e-145	ref_cov=34/37	tot_cov=49/61
RA	3018	.	NC_007779	4169454	0	G	C	bias_e_value=727607	bias_p_value=0.156598	fisher_strand_p_value=0.243802	frequency=3.735080e-01	genotype_quality=168.0	ks_quality_p_value=0.148804	log10_base_likelihood=-121.054	log10_qual_likelihood_position_model=6.5301	log10_strand_likelihood_position_model=1.13318	new_cov=9/22	polymorphism_quality=116.2	quality=116.2	quality_position_model=6.15558e-116	ref_cov=23/29	tot_cov=32/51
RA	3019	.	NC_007779	4169458	0	T	C	bias_e_value=264805	bias_p_value=0.0569924	fisher_strand_p_value=0.156745	frequency=3.659072e-01	genotype_quality=156.5	ks_quality_p_value=0.065104	log10_base_likelihood=-102.577	log10_qual_likelihood_position_model=6.78069	log10_strand_likelihood_position_model=1.25637	new_cov=8/22	polymorphism_quality=97.6	quality=97.6	quality_position_model=4.77931e-97	ref_cov=23/29	tot_cov=31/51
RA	3020	.	NC_007779	4169464	0	A	T	bias_e_value=314935	bias_p_value=0.0677814	fisher_strand_p_value=0.135298	frequency=3.332591e-01	genotype_quality=109.4	ks_quality_p_value=0.0932427	log10_base_likelihood=-60.7286	log10_qual_likelihood_position_model=6.21667	log10_strand_likelihood_position_model=1.16972	new_cov=4/13	polymorphism_quality=55.7	quality=55.7	quality_position_model=1.00139e-55	ref_cov=16/18	tot_cov=20/31
RA	3021	.	NC_007779	4169476	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3022	.	NC_007779	4169478	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3023	.	NC_007779	4169479	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3024	.	NC_007779	4169481	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3025	.	NC_007779	4169482	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3026	.	NC_007779	4169483	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3027	.	NC_007779	4169484	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3028	.	NC_007779	4169485	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3029	.	NC_007779	4169486	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3030	.	NC_007779	4169487	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3031	.	NC_007779	4169488	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=1/1	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3032	.	NC_007779	4169489	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3033	.	NC_007779	4169490	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3034	.	NC_007779	4169491	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3035	.	NC_007779	4169494	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3036	.	NC_007779	4169498	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3037	.	NC_007779	4169499	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3038	.	NC_007779	4169500	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3039	.	NC_007779	4169501	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3040	.	NC_007779	4169503	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3041	.	NC_007779	4169505	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3042	.	NC_007779	4169506	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3043	.	NC_007779	4169507	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3044	.	NC_007779	4169508	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3045	.	NC_007779	4169509	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3046	.	NC_007779	4169510	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3047	.	NC_007779	4169512	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3048	.	NC_007779	4169513	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3049	.	NC_007779	4169515	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3050	.	NC_007779	4169516	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3051	.	NC_007779	4169519	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3052	.	NC_007779	4169521	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3053	.	NC_007779	4169522	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=1/1	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3054	.	NC_007779	4169523	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3055	.	NC_007779	4169524	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3056	.	NC_007779	4169525	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=1/1	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3057	.	NC_007779	4169526	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3058	.	NC_007779	4169527	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3059	.	NC_007779	4169528	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3060	.	NC_007779	4169531	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3061	.	NC_007779	4169532	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3062	.	NC_007779	4169533	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3063	.	NC_007779	4169534	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3064	.	NC_007779	4169535	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3065	.	NC_007779	4169536	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3066	.	NC_007779	4169537	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3067	.	NC_007779	4169541	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3068	.	NC_007779	4169542	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3069	.	NC_007779	4169543	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3070	.	NC_007779	4169546	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=1/1	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3071	.	NC_007779	4169547	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3072	.	NC_007779	4169548	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3073	.	NC_007779	4169549	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3074	.	NC_007779	4169550	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3075	.	NC_007779	4169551	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	3076	.	NC_007779	4169552	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3077	.	NC_007779	4169555	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/1	reject=EVALUE	tot_cov=1/1
RA	3078	.	NC_007779	4170016	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=10/5	reject=EVALUE	tot_cov=10/5
RA	3079	.	NC_007779	4170018	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=10/5	reject=EVALUE	tot_cov=10/5
RA	3080	.	NC_007779	4170019	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=10/5
RA	3081	.	NC_007779	4170020	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=10/5	reject=EVALUE	tot_cov=10/5
RA	3082	.	NC_007779	4170021	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=10/5	reject=EVALUE	tot_cov=10/5
RA	3083	.	NC_007779	4170022	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=10/5	reject=EVALUE	tot_cov=10/5
RA	3084	.	NC_007779	4170023	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=10/5	reject=EVALUE	tot_cov=10/5
RA	3085	.	NC_007779	4170024	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=10/5	reject=EVALUE	tot_cov=10/5
RA	3086	.	NC_007779	4170029	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=10/5	reject=EVALUE	tot_cov=10/5
RA	3087	.	NC_007779	4170031	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=10/5	reject=EVALUE	tot_cov=10/5
RA	3088	.	NC_007779	4170032	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=10/5	reject=EVALUE	tot_cov=10/5
RA	3089	.	NC_007779	4170035	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3090	.	NC_007779	4170036	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3091	.	NC_007779	4170037	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3092	.	NC_007779	4170038	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3093	.	NC_007779	4170039	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3094	.	NC_007779	4170040	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3095	.	NC_007779	4170041	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3096	.	NC_007779	4170042	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3097	.	NC_007779	4170043	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3098	.	NC_007779	4170044	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3099	.	NC_007779	4170046	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=9/5
RA	3100	.	NC_007779	4170048	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3101	.	NC_007779	4170049	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=9/5
RA	3102	.	NC_007779	4170050	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3103	.	NC_007779	4170051	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3104	.	NC_007779	4170052	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3105	.	NC_007779	4170053	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3106	.	NC_007779	4170054	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3107	.	NC_007779	4170055	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3108	.	NC_007779	4170056	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3109	.	NC_007779	4170057	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3110	.	NC_007779	4170058	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3111	.	NC_007779	4170062	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=9/5	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=9/5
RA	3112	.	NC_007779	4170063	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=9/5	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=9/5
RA	3113	.	NC_007779	4170064	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3114	.	NC_007779	4170065	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3115	.	NC_007779	4170067	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3116	.	NC_007779	4170068	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3117	.	NC_007779	4170069	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3118	.	NC_007779	4170070	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3119	.	NC_007779	4170071	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3120	.	NC_007779	4170072	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3121	.	NC_007779	4170073	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3122	.	NC_007779	4170074	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3123	.	NC_007779	4170076	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3124	.	NC_007779	4170077	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3125	.	NC_007779	4170078	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3126	.	NC_007779	4170079	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3127	.	NC_007779	4170080	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3128	.	NC_007779	4170082	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3129	.	NC_007779	4170083	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3130	.	NC_007779	4170084	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3131	.	NC_007779	4170085	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3132	.	NC_007779	4170086	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3133	.	NC_007779	4170087	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3134	.	NC_007779	4170088	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=9/5
RA	3135	.	NC_007779	4170090	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3136	.	NC_007779	4170091	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=9/5
RA	3137	.	NC_007779	4170093	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3138	.	NC_007779	4170094	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=9/5
RA	3139	.	NC_007779	4170095	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3140	.	NC_007779	4170097	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3141	.	NC_007779	4170098	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3142	.	NC_007779	4170099	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3143	.	NC_007779	4170100	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=9/5
RA	3144	.	NC_007779	4170102	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=9/5	reject=EVALUE	tot_cov=9/5
RA	3145	.	NC_007779	4170103	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=9/5
RA	3146	.	NC_007779	4190480	0	A	C	bias_e_value=0.0965879	bias_p_value=2.0788e-08	fisher_strand_p_value=9.54918e-10	frequency=7.104683e-02	genotype_quality=709.1	ks_quality_p_value=1	log10_base_likelihood=-9.70822	log10_qual_likelihood_position_model=27.4593	log10_strand_likelihood_position_model=9.02003	new_cov=0/23	polymorphism_quality=4.3	quality=4.3	quality_position_model=Inf	ref_cov=133/79	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=133/102
RA	3147	.	NC_007779	4197139	0	T	G	bias_e_value=1.30174	bias_p_value=2.80164e-07	fisher_strand_p_value=1.47191e-08	frequency=6.952143e-02	genotype_quality=451.7	ks_quality_p_value=1	log10_base_likelihood=-19.188	log10_qual_likelihood_position_model=13.4376	log10_strand_likelihood_position_model=7.83212	new_cov=11/0	polymorphism_quality=13.9	quality=13.9	quality_position_model=Inf	ref_cov=20/107	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=31/107
RA	3148	.	NC_007779	4200494	0	T	G	bias_e_value=2.31441	bias_p_value=4.98116e-07	fisher_strand_p_value=2.7033e-08	frequency=6.604719e-02	genotype_quality=625.6	ks_quality_p_value=1	log10_base_likelihood=-6.95434	log10_qual_likelihood_position_model=26.4017	log10_strand_likelihood_position_model=7.86914	new_cov=24/0	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=81/105	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=106/105
RA	3149	.	NC_007779	4200679	0	C	G	bias_e_value=3137.31	bias_p_value=0.000675223	fisher_strand_p_value=6.32961e-05	frequency=3.805351e-02	genotype_quality=584.9	ks_quality_p_value=1	log10_base_likelihood=-7.7897	log10_qual_likelihood_position_model=10.6296	log10_strand_likelihood_position_model=4.19862	new_cov=0/7	polymorphism_quality=2.3	quality=2.3	quality_position_model=Inf	ref_cov=116/35	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=116/42
RA	3150	.	NC_007779	4200820	0	A	C	bias_e_value=0.510011	bias_p_value=1.09766e-07	fisher_strand_p_value=5.48237e-09	frequency=4.244137e-02	genotype_quality=644.5	ks_quality_p_value=1	log10_base_likelihood=-5.68533	log10_qual_likelihood_position_model=23.8096	log10_strand_likelihood_position_model=8.45825	new_cov=0/26	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=106/82	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=106/109
RA	3151	.	NC_007779	4207565	0	C	A	bias_e_value=475775	bias_p_value=0.102398	fisher_strand_p_value=0.0233809	frequency=3.846645e-02	genotype_quality=681.6	ks_quality_p_value=0.90116	log10_base_likelihood=-10.0921	log10_qual_likelihood_position_model=10.397	log10_strand_likelihood_position_model=1.76195	new_cov=9/1	polymorphism_quality=4.7	quality=4.7	quality_position_model=Inf	ref_cov=107/96	reject=POLYMORPHISM_STRAND	tot_cov=117/97
RA	3152	.	NC_007779	4211222	0	C	A	bias_e_value=21.479	bias_p_value=4.62278e-06	fisher_strand_p_value=2.87828e-07	frequency=4.958153e-02	genotype_quality=837.5	ks_quality_p_value=1	log10_base_likelihood=-7.92347	log10_qual_likelihood_position_model=16.8021	log10_strand_likelihood_position_model=6.54087	new_cov=17/0	polymorphism_quality=2.4	quality=2.4	quality_position_model=Inf	ref_cov=88/138	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=106/138
RA	3153	.	NC_007779	4220019	0	A	C	bias_e_value=0.0100602	bias_p_value=2.1652e-09	fisher_strand_p_value=8.97143e-11	frequency=7.738113e-02	genotype_quality=618.2	ks_quality_p_value=1	log10_base_likelihood=-10.2793	log10_qual_likelihood_position_model=34.8684	log10_strand_likelihood_position_model=10.3482	new_cov=0/31	polymorphism_quality=4.8	quality=4.8	quality_position_model=Inf	ref_cov=115/84	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=115/115
RA	3154	.	NC_007779	4225501	1	.	T	bias_e_value=3924960	bias_p_value=0.844745	fisher_strand_p_value=0.498763	frequency=8.771896e-03	genotype_quality=1124.2	ks_quality_p_value=0.997209	log10_base_likelihood=-7.65106	log10_qual_likelihood_position_model=2.12067	log10_strand_likelihood_position_model=0.566532	new_cov=2/0	polymorphism_quality=2.2	quality=2.2	quality_position_model=7.56957e-07	ref_cov=117/109	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=119/109
RA	3155	.	NC_007779	4226513	0	C	A	bias_e_value=33.2287	bias_p_value=7.15159e-06	fisher_strand_p_value=4.58972e-07	frequency=6.225538e-02	genotype_quality=727.0	ks_quality_p_value=0.999141	log10_base_likelihood=-8.05358	log10_qual_likelihood_position_model=19.2427	log10_strand_likelihood_position_model=6.33821	new_cov=19/0	polymorphism_quality=2.6	quality=2.6	quality_position_model=Inf	ref_cov=88/113	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=107/113
RA	3156	.	NC_007779	4227183	0	T	G	bias_e_value=1.71178e-11	bias_p_value=3.68416e-18	fisher_strand_p_value=8.1965e-20	frequency=1.074238e-01	genotype_quality=557.1	ks_quality_p_value=1	log10_base_likelihood=-14.1068	log10_qual_likelihood_position_model=27.8543	log10_strand_likelihood_position_model=19.0864	new_cov=36/0	polymorphism_quality=8.7	quality=8.7	quality_position_model=Inf	ref_cov=38/132	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=74/132
RA	3157	.	NC_007779	4309615	0	C	G	bias_e_value=494.245	bias_p_value=0.000106373	fisher_strand_p_value=8.38289e-06	frequency=4.474831e-02	genotype_quality=587.3	ks_quality_p_value=1	log10_base_likelihood=-6.75747	log10_qual_likelihood_position_model=9.35926	log10_strand_likelihood_position_model=5.07661	new_cov=9/0	polymorphism_quality=1.2	quality=1.2	quality_position_model=Inf	ref_cov=39/117	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=49/117
RA	3158	.	NC_007779	4312218	0	T	G	bias_e_value=0.392062	bias_p_value=8.4381e-08	fisher_strand_p_value=4.15701e-09	frequency=4.803944e-02	genotype_quality=612.0	ks_quality_p_value=1	log10_base_likelihood=-5.65429	log10_qual_likelihood_position_model=24.7095	log10_strand_likelihood_position_model=8.38122	new_cov=21/0	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=65/114	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=86/114
RA	3159	.	NC_007779	4321435	0	G	C	bias_e_value=8.60504	bias_p_value=1.85201e-06	fisher_strand_p_value=1.08721e-07	frequency=4.542351e-02	genotype_quality=478.5	ks_quality_p_value=1	log10_base_likelihood=-10.3858	log10_qual_likelihood_position_model=7.771	log10_strand_likelihood_position_model=6.96369	new_cov=6/0	polymorphism_quality=5.0	quality=5.0	quality_position_model=Inf	ref_cov=5/112	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=11/112
RA	3160	.	NC_007779	4337469	0	A	C	bias_e_value=5.01591e-13	bias_p_value=1.07954e-19	fisher_strand_p_value=2.22332e-21	frequency=1.170807e-01	genotype_quality=484.7	ks_quality_p_value=1	log10_base_likelihood=-13.5725	log10_qual_likelihood_position_model=32.7935	log10_strand_likelihood_position_model=20.653	new_cov=0/31	polymorphism_quality=8.2	quality=8.2	quality_position_model=Inf	ref_cov=122/19	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=122/51
RA	3161	.	NC_007779	4346532	0	G	T	bias_e_value=23.761	bias_p_value=5.11394e-06	fisher_strand_p_value=3.20559e-07	frequency=4.145622e-02	genotype_quality=815.0	ks_quality_p_value=1	log10_base_likelihood=-6.12791	log10_qual_likelihood_position_model=19.0068	log10_strand_likelihood_position_model=6.49409	new_cov=0/14	polymorphism_quality=0.6	quality=0.6	quality_position_model=Inf	ref_cov=142/67	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=142/81
RA	3162	.	NC_007779	4347339	0	C	T	bias_e_value=4599830	bias_p_value=0.989991	fisher_strand_p_value=0.875784	frequency=2.293615e-01	genotype_quality=541.5	ks_quality_p_value=0.984136	log10_base_likelihood=-157.678	log10_qual_likelihood_position_model=8.92307	log10_strand_likelihood_position_model=0.923447	new_cov=25/28	polymorphism_quality=152.8	quality=152.8	quality_position_model=1.95479e-150	ref_cov=88/90	tot_cov=113/118
RA	3163	.	NC_007779	4348529	0	T	G	bias_e_value=5.0208e-09	bias_p_value=1.0806e-15	fisher_strand_p_value=2.76169e-17	frequency=1.142302e-01	genotype_quality=476.7	ks_quality_p_value=1	log10_base_likelihood=-11.9554	log10_qual_likelihood_position_model=30.2378	log10_strand_likelihood_position_model=16.5588	new_cov=27/0	polymorphism_quality=6.6	quality=6.6	quality_position_model=Inf	ref_cov=25/118	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=53/118
RA	3164	.	NC_007779	4348801	0	G	T	bias_e_value=4178970	bias_p_value=0.899412	fisher_strand_p_value=0.586436	frequency=1.502695e-01	genotype_quality=850.9	ks_quality_p_value=1	log10_base_likelihood=-97.7294	log10_qual_likelihood_position_model=10.0465	log10_strand_likelihood_position_model=0.908018	new_cov=17/18	polymorphism_quality=92.8	quality=92.8	quality_position_model=2.9037e-89	ref_cov=106/91	tot_cov=123/109
RA	3165	.	NC_007779	4353540	0	T	C	bias_e_value=4307300	bias_p_value=0.927032	fisher_strand_p_value=0.677836	frequency=9.420395e-03	genotype_quality=2093.0	ks_quality_p_value=0.948863	log10_base_likelihood=-8.60932	log10_qual_likelihood_position_model=4.78142	log10_strand_likelihood_position_model=0.516842	new_cov=3/2	polymorphism_quality=3.1	quality=3.1	quality_position_model=4.09458e-05	ref_cov=253/269	tot_cov=256/271
RA	3166	.	NC_007779	4371271	0	A	.	frequency=1	genotype_quality=869.0	new_cov=84/90	quality=869.0	ref_cov=1/0	tot_cov=85/90
RA	3167	.	NC_007779	4371272	0	A	.	frequency=1	genotype_quality=867.3	new_cov=84/90	quality=867.3	ref_cov=0/0	tot_cov=85/90
RA	3168	.	NC_007779	4414724	1	.	T	bias_e_value=2671760	bias_p_value=0.575025	fisher_strand_p_value=0.276747	frequency=1.369858e-02	genotype_quality=1058.4	ks_quality_p_value=0.848417	log10_base_likelihood=-12.4739	log10_qual_likelihood_position_model=3.35869	log10_strand_likelihood_position_model=0.627028	new_cov=2/1	polymorphism_quality=7.1	quality=7.1	quality_position_model=1.75806e-10	ref_cov=74/142	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=76/143
RA	3169	.	NC_007779	4415931	1	.	T	bias_e_value=2993920	bias_p_value=0.644361	fisher_strand_p_value=1	frequency=8.130074e-03	genotype_quality=1209.5	ks_quality_p_value=0.286285	log10_base_likelihood=-8.06324	log10_qual_likelihood_position_model=1.88138	log10_strand_likelihood_position_model=0.302748	new_cov=1/1	polymorphism_quality=2.6	quality=2.6	quality_position_model=8.50265e-08	ref_cov=111/133	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=112/134
RA	3170	.	NC_007779	4419586	0	T	G	bias_e_value=1.20175e-10	bias_p_value=2.58646e-17	fisher_strand_p_value=6.02149e-19	frequency=2.308726e-01	genotype_quality=413.8	ks_quality_p_value=1	log10_base_likelihood=-49.3435	log10_qual_likelihood_position_model=31.1452	log10_strand_likelihood_position_model=18.474	new_cov=52/0	polymorphism_quality=44.3	quality=44.3	quality_position_model=Inf	ref_cov=53/98	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=105/98
RA	3171	.	NC_007779	4420004	0	G	A	bias_e_value=1172590	bias_p_value=0.25237	fisher_strand_p_value=0.600392	frequency=1.292419e-02	genotype_quality=937.5	ks_quality_p_value=0.114233	log10_base_likelihood=-5.64055	log10_qual_likelihood_position_model=1.97106	log10_strand_likelihood_position_model=0.455341	new_cov=1/2	polymorphism_quality=0.1	quality=0.1	quality_position_model=5.18705e-05	ref_cov=122/106	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=123/108
RA	3172	.	NC_007779	4423038	0	C	G	bias_e_value=0.000102328	bias_p_value=2.20234e-11	fisher_strand_p_value=7.61978e-13	frequency=9.988976e-02	genotype_quality=576.5	ks_quality_p_value=1	log10_base_likelihood=-18.8021	log10_qual_likelihood_position_model=19.6028	log10_strand_likelihood_position_model=12.1181	new_cov=19/0	polymorphism_quality=13.5	quality=13.5	quality_position_model=Inf	ref_cov=27/122	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=46/122
RA	3173	.	NC_007779	4429120	0	G	T	bias_e_value=95.4526	bias_p_value=2.05436e-05	fisher_strand_p_value=1.68468e-06	frequency=5.555820e-02	genotype_quality=717.0	ks_quality_p_value=0.843048	log10_base_likelihood=-7.3615	log10_qual_likelihood_position_model=18.9099	log10_strand_likelihood_position_model=5.77348	new_cov=0/18	polymorphism_quality=1.9	quality=1.9	quality_position_model=Inf	ref_cov=114/95	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=114/114
RA	3174	.	NC_007779	4429130	0	A	.	bias_e_value=4638050	bias_p_value=0.998218	fisher_strand_p_value=1	frequency=1.868057e-02	genotype_quality=845.9	ks_quality_p_value=0.940893	log10_base_likelihood=-11.3277	log10_qual_likelihood_position_model=2.2618	log10_strand_likelihood_position_model=0.422188	new_cov=2/2	polymorphism_quality=5.9	quality=5.9	quality_position_model=1.21827e-10	ref_cov=107/103	reject=INDEL_HOMOPOLYMER	tot_cov=109/105
RA	3175	.	NC_007779	4455463	0	T	G	bias_e_value=1.93884e-08	bias_p_value=4.17285e-15	fisher_strand_p_value=1.10566e-16	frequency=1.272273e-01	genotype_quality=510.0	ks_quality_p_value=1	log10_base_likelihood=-25.2414	log10_qual_likelihood_position_model=25.799	log10_strand_likelihood_position_model=15.9564	new_cov=27/0	polymorphism_quality=20.0	quality=20.0	quality_position_model=Inf	ref_cov=30/125	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=57/125
RA	3176	.	NC_007779	4477098	1	.	A	bias_e_value=3984630	bias_p_value=0.857587	fisher_strand_p_value=0.666137	frequency=2.242184e-02	genotype_quality=1035.9	ks_quality_p_value=0.775015	log10_base_likelihood=-21.6834	log10_qual_likelihood_position_model=3.67418	log10_strand_likelihood_position_model=0.536017	new_cov=2/3	polymorphism_quality=16.4	quality=16.4	quality_position_model=1.28374e-19	ref_cov=117/101	reject=INDEL_HOMOPOLYMER	tot_cov=119/104
RA	3177	.	NC_007779	4487705	0	T	.	bias_e_value=916263	bias_p_value=0.197201	fisher_strand_p_value=0.113972	frequency=1.131344e-02	genotype_quality=1032.7	ks_quality_p_value=0.431155	log10_base_likelihood=-8.19859	log10_qual_likelihood_position_model=1.6067	log10_strand_likelihood_position_model=0.943202	new_cov=3/0	polymorphism_quality=2.7	quality=2.7	quality_position_model=1.47267e-07	ref_cov=126/136	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=129/136
RA	3178	.	NC_007779	4513134	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3179	.	NC_007779	4513135	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3180	.	NC_007779	4513136	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3181	.	NC_007779	4513137	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3182	.	NC_007779	4513138	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3183	.	NC_007779	4513139	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3184	.	NC_007779	4513140	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3185	.	NC_007779	4513141	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3186	.	NC_007779	4513143	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3187	.	NC_007779	4513144	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3188	.	NC_007779	4513145	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3189	.	NC_007779	4513146	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3190	.	NC_007779	4513147	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3191	.	NC_007779	4513149	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3192	.	NC_007779	4513150	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3193	.	NC_007779	4513151	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3194	.	NC_007779	4513152	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3195	.	NC_007779	4513153	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3196	.	NC_007779	4513154	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	3197	.	NC_007779	4513155	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3198	.	NC_007779	4513156	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3199	.	NC_007779	4513157	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3200	.	NC_007779	4513159	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3201	.	NC_007779	4513160	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=1/0	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	3202	.	NC_007779	4513161	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3203	.	NC_007779	4513162	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3204	.	NC_007779	4513163	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3205	.	NC_007779	4513164	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3206	.	NC_007779	4513165	0	C	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3207	.	NC_007779	4513167	0	G	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3208	.	NC_007779	4513168	0	T	A	frequency=1	genotype_quality=-0.5	new_cov=0/0	quality=-0.5	ref_cov=1/0	reject=EVALUE	tot_cov=1/0
RA	3209	.	NC_007779	4515360	0	C	T	bias_e_value=452310	bias_p_value=0.0973478	fisher_strand_p_value=0.315963	frequency=2.052116e-02	genotype_quality=757.3	ks_quality_p_value=0.0625774	log10_base_likelihood=-7.41782	log10_qual_likelihood_position_model=4.33588	log10_strand_likelihood_position_model=0.635829	new_cov=0/4	polymorphism_quality=1.9	quality=1.9	quality_position_model=0.000343195	ref_cov=59/131	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=59/135
RA	3210	.	NC_007779	4515952	0	G	T	bias_e_value=6568.75	bias_p_value=0.00141375	fisher_strand_p_value=0.000143544	frequency=4.500866e-02	genotype_quality=682.2	ks_quality_p_value=1	log10_base_likelihood=-8.5061	log10_qual_likelihood_position_model=12.1152	log10_strand_likelihood_position_model=3.87585	new_cov=0/14	polymorphism_quality=3.0	quality=3.0	quality_position_model=Inf	ref_cov=102/107	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=103/121
RA	3211	.	NC_007779	4516697	0	T	G	bias_e_value=205.838	bias_p_value=4.43012e-05	fisher_strand_p_value=3.24853e-06	frequency=8.257389e-02	genotype_quality=517.3	ks_quality_p_value=1	log10_base_likelihood=-9.52438	log10_qual_likelihood_position_model=18.7965	log10_strand_likelihood_position_model=5.56592	new_cov=22/0	polymorphism_quality=4.1	quality=4.1	quality_position_model=Inf	ref_cov=90/80	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=112/80
RA	3212	.	NC_007779	4540870	0	T	G	bias_e_value=4.13783e-18	bias_p_value=8.90559e-25	fisher_strand_p_value=1.47248e-26	frequency=2.109036e-01	genotype_quality=375.8	ks_quality_p_value=1	log10_base_likelihood=-31.6747	log10_qual_likelihood_position_model=37.5311	log10_strand_likelihood_position_model=25.832	new_cov=46/0	polymorphism_quality=26.5	quality=26.5	quality_position_model=Inf	ref_cov=18/102	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=64/102
RA	3213	.	NC_007779	4540872	0	C	G	bias_e_value=1.21539	bias_p_value=2.61581e-07	fisher_strand_p_value=1.36906e-08	frequency=7.950926e-02	genotype_quality=527.2	ks_quality_p_value=1	log10_base_likelihood=-10.3856	log10_qual_likelihood_position_model=13.4436	log10_strand_likelihood_position_model=7.86358	new_cov=17/0	polymorphism_quality=5.0	quality=5.0	quality_position_model=Inf	ref_cov=46/104	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=63/104
RA	3214	.	NC_007779	4540877	0	A	T	bias_e_value=0.000123095	bias_p_value=2.64929e-11	fisher_strand_p_value=9.2273e-13	frequency=1.192756e-01	genotype_quality=511.3	ks_quality_p_value=1	log10_base_likelihood=-16.2624	log10_qual_likelihood_position_model=19.1153	log10_strand_likelihood_position_model=12.0349	new_cov=19/0	polymorphism_quality=10.9	quality=10.9	quality_position_model=Inf	ref_cov=23/107	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=42/107
RA	3215	.	NC_007779	4540892	0	T	A	bias_e_value=5.39854	bias_p_value=1.16189e-06	fisher_strand_p_value=6.62828e-08	frequency=7.627869e-02	genotype_quality=556.7	ks_quality_p_value=1	log10_base_likelihood=-6.8156	log10_qual_likelihood_position_model=17.8642	log10_strand_likelihood_position_model=7.1786	new_cov=15/0	polymorphism_quality=1.3	quality=1.3	quality_position_model=Inf	ref_cov=42/100	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=57/100
RA	3216	.	NC_007779	4546535	0	T	A	frequency=1	genotype_quality=644.6	new_cov=96/62	quality=644.6	ref_cov=0/0	tot_cov=96/62
RA	3217	.	NC_007779	4554532	0	T	C	bias_e_value=97.7788	bias_p_value=2.10443e-05	fisher_strand_p_value=1.45748e-06	frequency=5.024052e-02	genotype_quality=442.9	ks_quality_p_value=1	log10_base_likelihood=-8.90487	log10_qual_likelihood_position_model=8.57264	log10_strand_likelihood_position_model=5.8364	new_cov=9/0	polymorphism_quality=3.4	quality=3.4	quality_position_model=Inf	ref_cov=27/110	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=37/110
RA	3218	.	NC_007779	4554534	0	A	C	bias_e_value=787002	bias_p_value=0.169381	fisher_strand_p_value=0.0401947	frequency=4.793453e-02	genotype_quality=408.8	ks_quality_p_value=1	log10_base_likelihood=-5.65103	log10_qual_likelihood_position_model=12.918	log10_strand_likelihood_position_model=1.7358	new_cov=7/6	polymorphism_quality=0.1	quality=0.1	quality_position_model=Inf	ref_cov=32/106	reject=EVALUE,SURROUNDING_HOMOPOLYMER	tot_cov=39/113
RA	3219	.	NC_007779	4561440	1	.	T	bias_e_value=4639240	bias_p_value=0.998473	fisher_strand_p_value=1	frequency=1.694870e-02	genotype_quality=846.2	ks_quality_p_value=0.945253	log10_base_likelihood=-12.7895	log10_qual_likelihood_position_model=2.57816	log10_strand_likelihood_position_model=0.349408	new_cov=2/1	polymorphism_quality=7.4	quality=7.4	quality_position_model=6.91998e-12	ref_cov=113/61	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=115/62
RA	3220	.	NC_007779	4573184	0	T	G	bias_e_value=3.90091e-11	bias_p_value=8.39568e-18	fisher_strand_p_value=1.90355e-19	frequency=1.331239e-01	genotype_quality=580.9	ks_quality_p_value=1	log10_base_likelihood=-21.8372	log10_qual_likelihood_position_model=31.396	log10_strand_likelihood_position_model=18.918	new_cov=53/0	polymorphism_quality=16.6	quality=16.6	quality_position_model=Inf	ref_cov=72/124	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=126/124
RA	3221	.	NC_007779	4578176	0	A	G	bias_e_value=0.140088	bias_p_value=3.01501e-08	fisher_strand_p_value=1.41024e-09	frequency=6.248522e-02	genotype_quality=490.8	ks_quality_p_value=1	log10_base_likelihood=-6.90595	log10_qual_likelihood_position_model=13.1173	log10_strand_likelihood_position_model=8.85071	new_cov=10/0	polymorphism_quality=1.4	quality=1.4	quality_position_model=Inf	ref_cov=12/115	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=22/115
RA	3222	.	NC_007779	4584556	0	C	A	bias_e_value=44.7604	bias_p_value=9.63348e-06	fisher_strand_p_value=6.30604e-07	frequency=5.226469e-02	genotype_quality=807.4	ks_quality_p_value=1	log10_base_likelihood=-11.5031	log10_qual_likelihood_position_model=17.0128	log10_strand_likelihood_position_model=6.20024	new_cov=17/0	polymorphism_quality=6.1	quality=6.1	quality_position_model=Inf	ref_cov=93/134	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=110/134
RA	3223	.	NC_007779	4598763	0	A	C	bias_e_value=82.5275	bias_p_value=1.77619e-05	fisher_strand_p_value=1.21483e-06	frequency=5.033016e-02	genotype_quality=662.3	ks_quality_p_value=1	log10_base_likelihood=-6.41842	log10_qual_likelihood_position_model=18.1477	log10_strand_likelihood_position_model=5.91549	new_cov=0/17	polymorphism_quality=0.9	quality=0.9	quality_position_model=Inf	ref_cov=114/84	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=114/101
RA	3224	.	NC_007779	4610781	0	A	C	bias_e_value=1.07164e-07	bias_p_value=2.30642e-14	fisher_strand_p_value=6.40964e-16	frequency=7.956362e-02	genotype_quality=701.6	ks_quality_p_value=1	log10_base_likelihood=-21.0263	log10_qual_likelihood_position_model=28.9329	log10_strand_likelihood_position_model=15.1932	new_cov=0/31	polymorphism_quality=15.8	quality=15.8	quality_position_model=Inf	ref_cov=149/56	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=149/87
RA	3225	.	NC_007779	4613456	0	C	A	bias_e_value=4543.11	bias_p_value=0.000977783	fisher_strand_p_value=9.53162e-05	frequency=4.717875e-02	genotype_quality=649.3	ks_quality_p_value=1	log10_base_likelihood=-6.82447	log10_qual_likelihood_position_model=11.4332	log10_strand_likelihood_position_model=4.11321	new_cov=14/0	polymorphism_quality=1.3	quality=1.3	quality_position_model=Inf	ref_cov=95/99	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=109/99
RA	3226	.	NC_007779	4615146	0	T	G	bias_e_value=213.988	bias_p_value=4.60553e-05	fisher_strand_p_value=3.61146e-06	frequency=3.188896e-02	genotype_quality=432.9	ks_quality_p_value=0.938005	log10_base_likelihood=-8.3001	log10_qual_likelihood_position_model=5.9072	log10_strand_likelihood_position_model=5.44232	new_cov=4/0	polymorphism_quality=2.8	quality=2.8	quality_position_model=Inf	ref_cov=3/118	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=7/118
RA	3227	.	NC_007779	4633691	0	G	C	bias_e_value=3845830	bias_p_value=0.827712	fisher_strand_p_value=0.598035	frequency=1.274586e-02	genotype_quality=965.9	ks_quality_p_value=0.792258	log10_base_likelihood=-6.95969	log10_qual_likelihood_position_model=1.6913	log10_strand_likelihood_position_model=0.459298	new_cov=1/2	polymorphism_quality=1.4	quality=1.4	quality_position_model=1.09699e-06	ref_cov=125/107	reject=EVALUE,POLYMORPHISM_STRAND	tot_cov=126/109
RA	3228	.	NC_007779	4633709	0	C	A	bias_e_value=94751.4	bias_p_value=0.0203927	fisher_strand_p_value=0.446929	frequency=2.890587e-02	genotype_quality=969.2	ks_quality_p_value=0.00669911	log10_base_likelihood=-13.6234	log10_qual_likelihood_position_model=6.95402	log10_strand_likelihood_position_model=0.759866	new_cov=5/2	polymorphism_quality=8.3	quality=8.3	quality_position_model=7.90868e-08	ref_cov=118/116	tot_cov=123/118
RA	3229	.	NC_007779	4633712	0	G	A	bias_e_value=43107.8	bias_p_value=0.00927781	fisher_strand_p_value=0.278582	frequency=2.955914e-02	genotype_quality=918.5	ks_quality_p_value=0.00431142	log10_base_likelihood=-14.2203	log10_qual_likelihood_position_model=7.58673	log10_strand_likelihood_position_model=0.798406	new_cov=5/2	polymorphism_quality=8.9	quality=8.9	quality_position_model=9.44142e-08	ref_cov=112/117	reject=SURROUNDING_HOMOPOLYMER	tot_cov=117/119
RA	3230	.	NC_007779	4633715	0	A	G	bias_e_value=327764	bias_p_value=0.0705426	fisher_strand_p_value=0.269246	frequency=2.949333e-02	genotype_quality=874.5	ks_quality_p_value=0.0492139	log10_base_likelihood=-16.5391	log10_qual_likelihood_position_model=3.69539	log10_strand_likelihood_position_model=0.827813	new_cov=5/2	polymorphism_quality=11.2	quality=11.2	quality_position_model=4.41377e-14	ref_cov=110/120	tot_cov=115/122
RA	3231	.	NC_007779	4633720	0	T	C	bias_e_value=1545780	bias_p_value=0.332688	fisher_strand_p_value=0.482342	frequency=3.369617e-02	genotype_quality=858.9	ks_quality_p_value=0.209514	log10_base_likelihood=-17.3051	log10_qual_likelihood_position_model=5.72002	log10_strand_likelihood_position_model=0.706556	new_cov=5/3	polymorphism_quality=12.0	quality=12.0	quality_position_model=6.35362e-13	ref_cov=107/121	tot_cov=112/124
RA	3232	.	NC_007779	4633721	0	C	G	bias_e_value=770095	bias_p_value=0.165743	fisher_strand_p_value=0.264	frequency=2.989578e-02	genotype_quality=940.2	ks_quality_p_value=0.147983	log10_base_likelihood=-19.1669	log10_qual_likelihood_position_model=4.82723	log10_strand_likelihood_position_model=0.847021	new_cov=5/2	polymorphism_quality=13.9	quality=13.9	quality_position_model=1.39213e-15	ref_cov=107/120	tot_cov=112/122
RA	3233	.	NC_007779	4633736	0	C	G	bias_e_value=570537	bias_p_value=0.122793	fisher_strand_p_value=0.255551	frequency=3.144360e-02	genotype_quality=885.1	ks_quality_p_value=0.103786	log10_base_likelihood=-19.5438	log10_qual_likelihood_position_model=4.2801	log10_strand_likelihood_position_model=0.884393	new_cov=5/2	polymorphism_quality=14.3	quality=14.3	quality_position_model=1.75226e-16	ref_cov=99/117	tot_cov=104/120
RA	3234	.	NC_007779	4633738	0	C	T	bias_e_value=142096	bias_p_value=0.0305825	fisher_strand_p_value=0.260093	frequency=3.087616e-02	genotype_quality=884.9	ks_quality_p_value=0.0185663	log10_base_likelihood=-14.3452	log10_qual_likelihood_position_model=5.23777	log10_strand_likelihood_position_model=0.862614	new_cov=5/2	polymorphism_quality=9.0	quality=9.0	quality_position_model=3.12194e-10	ref_cov=102/117	tot_cov=107/119
RA	3235	.	NC_007779	4633740	0	A	T	bias_e_value=188114	bias_p_value=0.0404866	fisher_strand_p_value=0.265791	frequency=3.196526e-02	genotype_quality=833.8	ks_quality_p_value=0.0253948	log10_base_likelihood=-17.753	log10_qual_likelihood_position_model=5.39133	log10_strand_likelihood_position_model=0.838441	new_cov=5/2	polymorphism_quality=12.4	quality=12.4	quality_position_model=1.4004e-13	ref_cov=100/111	tot_cov=106/113
RA	3236	.	NC_007779	4633745	0	G	T	bias_e_value=561448	bias_p_value=0.120837	fisher_strand_p_value=0.255308	frequency=3.159428e-02	genotype_quality=884.0	ks_quality_p_value=0.101779	log10_base_likelihood=-16.1031	log10_qual_likelihood_position_model=7.20245	log10_strand_likelihood_position_model=0.885386	new_cov=5/2	polymorphism_quality=10.8	quality=10.8	quality_position_model=5.36804e-10	ref_cov=98/116	tot_cov=103/118
RA	3237	.	NC_007779	4633759	0	C	A	bias_e_value=2104750	bias_p_value=0.452991	fisher_strand_p_value=0.242929	frequency=3.392887e-02	genotype_quality=822.1	ks_quality_p_value=0.658129	log10_base_likelihood=-15.2048	log10_qual_likelihood_position_model=2.09937	log10_strand_likelihood_position_model=1.00015	new_cov=5/2	polymorphism_quality=9.9	quality=9.9	quality_position_model=3.57989e-14	ref_cov=84/115	tot_cov=89/117
RA	3238	.	NC_007779	4633760	0	G	A	bias_e_value=1785670	bias_p_value=0.384319	fisher_strand_p_value=0.243158	frequency=3.393173e-02	genotype_quality=784.0	ks_quality_p_value=0.512861	log10_base_likelihood=-15.6574	log10_qual_likelihood_position_model=2.25868	log10_strand_likelihood_position_model=0.992626	new_cov=5/2	polymorphism_quality=10.3	quality=10.3	quality_position_model=1.76968e-14	ref_cov=84/114	tot_cov=89/117
RA	3239	.	NC_007779	4633761	0	C	G	bias_e_value=1864630	bias_p_value=0.401313	fisher_strand_p_value=0.242929	frequency=3.396702e-02	genotype_quality=816.5	ks_quality_p_value=0.54748	log10_base_likelihood=-19.9182	log10_qual_likelihood_position_model=2.27124	log10_strand_likelihood_position_model=1.00015	new_cov=5/2	polymorphism_quality=14.6	quality=14.6	quality_position_model=8.81332e-19	ref_cov=84/115	reject=SURROUNDING_HOMOPOLYMER	tot_cov=89/117
RA	3240	.	NC_007779	4633762	0	G	A	bias_e_value=1935440	bias_p_value=0.416553	fisher_strand_p_value=0.242929	frequency=3.392124e-02	genotype_quality=782.9	ks_quality_p_value=0.579018	log10_base_likelihood=-15.3742	log10_qual_likelihood_position_model=2.69175	log10_strand_likelihood_position_model=1.00015	new_cov=5/2	polymorphism_quality=10.0	quality=10.0	quality_position_model=9.64511e-14	ref_cov=84/115	tot_cov=89/117
RA	3241	.	NC_007779	4633774	0	T	C	bias_e_value=2683390	bias_p_value=0.577529	fisher_strand_p_value=0.244051	frequency=3.242302e-02	genotype_quality=779.0	ks_quality_p_value=0.969179	log10_base_likelihood=-13.9361	log10_qual_likelihood_position_model=7.552	log10_strand_likelihood_position_model=0.981347	new_cov=5/2	polymorphism_quality=8.6	quality=8.6	quality_position_model=2.64888e-07	ref_cov=89/119	tot_cov=94/121
RA	3242	.	NC_007779	4633775	0	A	G	bias_e_value=2517130	bias_p_value=0.541747	fisher_strand_p_value=0.244051	frequency=3.248405e-02	genotype_quality=803.3	ks_quality_p_value=0.871047	log10_base_likelihood=-15.7149	log10_qual_likelihood_position_model=4.17816	log10_strand_likelihood_position_model=0.981347	new_cov=5/2	polymorphism_quality=10.4	quality=10.4	quality_position_model=1.35663e-12	ref_cov=89/119	tot_cov=94/121
RA	3243	.	NC_007779	4633778	0	C	A	bias_e_value=2517760	bias_p_value=0.54188	fisher_strand_p_value=0.244789	frequency=3.127670e-02	genotype_quality=907.7	ks_quality_p_value=0.868772	log10_base_likelihood=-14.5666	log10_qual_likelihood_position_model=4.67627	log10_strand_likelihood_position_model=0.973162	new_cov=5/2	polymorphism_quality=9.2	quality=9.2	quality_position_model=6.39468e-11	ref_cov=93/123	tot_cov=98/125
RA	3244	.	NC_007779	4636470	0	C	G	bias_e_value=1.38922e-18	bias_p_value=2.98993e-25	fisher_strand_p_value=4.85458e-27	frequency=2.164912e-01	genotype_quality=559.6	ks_quality_p_value=1	log10_base_likelihood=-75.9921	log10_qual_likelihood_position_model=34.5187	log10_strand_likelihood_position_model=26.3138	new_cov=44/0	polymorphism_quality=71.0	quality=71.0	quality_position_model=2.83263e-17	ref_cov=24/131	reject=POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE,SURROUNDING_HOMOPOLYMER	tot_cov=68/131
RA	3245	.	NC_007779	4636473	0	A	G	bias_e_value=0.213135	bias_p_value=4.58716e-08	fisher_strand_p_value=2.19072e-09	frequency=4.925585e-02	genotype_quality=581.9	ks_quality_p_value=1	log10_base_likelihood=-6.51731	log10_qual_likelihood_position_model=14.4304	log10_strand_likelihood_position_model=8.65941	new_cov=10/0	polymorphism_quality=1.0	quality=1.0	quality_position_model=Inf	ref_cov=16/135	reject=EVALUE,POLYMORPHISM_STRAND,FISHER_STRAND_P_VALUE	tot_cov=26/135
RA	3246	.	NC_007779	4642414	1	.	A	bias_e_value=4139290	bias_p_value=0.890872	fisher_strand_p_value=1	frequency=9.803772e-03	genotype_quality=982.4	ks_quality_p_value=0.570828	log10_base_likelihood=-8.3269	log10_qual_likelihood_position_model=1.64585	log10_strand_likelihood_position_model=0.299941	new_cov=1/1	polymorphism_quality=2.9	quality=2.9	quality_position_model=2.57544e-08	ref_cov=106/96	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=107/97
RA	3247	.	NC_007779	4644244	1	.	T	bias_e_value=3858910	bias_p_value=0.830527	fisher_strand_p_value=1	frequency=8.733749e-03	genotype_quality=1094.2	ks_quality_p_value=0.477586	log10_base_likelihood=-8.22603	log10_qual_likelihood_position_model=1.25179	log10_strand_likelihood_position_model=0.308243	new_cov=1/1	polymorphism_quality=2.7	quality=2.7	quality_position_model=1.30927e-08	ref_cov=130/97	reject=POLYMORPHISM_STRAND,INDEL_HOMOPOLYMER	tot_cov=131/98
MC	3248	.	NC_007779	274733	371972	0	0	left_inside_cov=0	left_outside_cov=196	right_inside_cov=0	right_outside_cov=198
MC	3249	.	NC_007779	654214	655412	1194	0	left_inside_cov=0	left_outside_cov=250	right_inside_cov=0	right_outside_cov=248
MC	3250	.	NC_007779	1301041	1302376	1325	0	left_inside_cov=0	left_outside_cov=203	right_inside_cov=0	right_outside_cov=201
MC	3251	.	NC_007779	1413639	1436698	0	0	left_inside_cov=0	left_outside_cov=282	right_inside_cov=0	right_outside_cov=285
MC	3252	.	NC_007779	2176983	2178208	1198	0	left_inside_cov=0	left_outside_cov=249	right_inside_cov=0	right_outside_cov=278
MC	3253	.	NC_007779	2320795	2322130	0	0	left_inside_cov=0	left_outside_cov=209	right_inside_cov=0	right_outside_cov=209
MC	3254	.	NC_007779	3128824	3147473	1178	0	left_inside_cov=165	left_outside_cov=168	right_inside_cov=0	right_outside_cov=233
MC	3255	.	NC_007779	3261134	3262337	1198	0	left_inside_cov=1	left_outside_cov=261	right_inside_cov=0	right_outside_cov=346
MC	3256	.	NC_007779	3742936	3744271	1325	0	left_inside_cov=0	left_outside_cov=258	right_inside_cov=1	right_outside_cov=257
MC	3257	.	NC_007779	3750591	3751789	1195	0	left_inside_cov=0	left_outside_cov=262	right_inside_cov=0	right_outside_cov=264
MC	3258	.	NC_007779	3958123	3958156	0	0	left_inside_cov=0	left_outside_cov=285	right_inside_cov=1	right_outside_cov=286
MC	3259	.	NC_007779	4310363	4311561	1198	0	left_inside_cov=0	left_outside_cov=252	right_inside_cov=0	right_outside_cov=254
JC	3260	.	NC_007779	1	1	NC_007779	4646332	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=113	coverage_plus=124	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__1__1__NC_007779__4646332__-1__0____101__101__0__0	max_left=95	max_left_minus=94	max_left_plus=95	max_min_left=50	max_min_left_minus=49	max_min_left_plus=50	max_min_right=50	max_min_right_minus=49	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.10	new_junction_frequency=1.000000e+00	new_junction_read_count=237	pos_hash_score=125	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=237
JC	3261	.	NC_007779	273179	1	NC_007779	657877	1	0	alignment_overlap=0	coverage_minus=73	coverage_plus=73	flanking_left=101	flanking_right=101	frequency=6.431718e-01	junction_possible_overlap_registers=90	key=NC_007779__273179__1__NC_007779__657877__1__0____101__101__1__0	max_left=95	max_left_minus=94	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=49	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=94	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.68	new_junction_frequency=6.431718e-01	new_junction_read_count=146	pos_hash_score=96	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.38	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=146
JC	3262	.	NC_007779	274373	-1	NC_007779	657880	-1	0	alignment_overlap=0	coverage_minus=35	coverage_plus=58	flanking_left=101	flanking_right=101	frequency=5.310734e-01	junction_possible_overlap_registers=90	key=NC_007779__274373__-1__NC_007779__657880__-1__0____101__101__1__0	max_left=83	max_left_minus=82	max_left_plus=83	max_min_left=50	max_min_left_minus=50	max_min_left_plus=49	max_min_right=47	max_min_right_minus=42	max_min_right_plus=47	max_pos_hash_score=180	max_right=94	max_right_minus=94	max_right_plus=93	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.44	new_junction_frequency=5.310734e-01	new_junction_read_count=94	pos_hash_score=60	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.38	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=93
JC	3263	.	NC_007779	274732	-1	NC_007779	371973	1	0	alignment_overlap=8	coverage_minus=73	coverage_plus=75	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=80	key=NC_007779__274732__-1__NC_007779__371965__1__8____101__101__0__0	max_left=87	max_left_minus=87	max_left_plus=85	max_min_left=44	max_min_left_minus=44	max_min_left_plus=44	max_min_right=46	max_min_right_minus=45	max_min_right_plus=46	max_pos_hash_score=160	max_right=87	max_right_minus=86	max_right_plus=87	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.77	new_junction_frequency=1.000000e+00	new_junction_read_count=147	pos_hash_score=95	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=2	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=80	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=148
JC	3264	.	NC_007779	289856	1	NC_007779	2176982	-1	-33	alignment_overlap=-33	coverage_minus=75	coverage_plus=76	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=57	key=NC_007779__289856__1__NC_007779__2176982__-1__-33__CTATTGCAATACCGCATTGTGAGGCGATTCATG__101__101__1__0	max_left=62	max_left_minus=62	max_left_plus=61	max_min_left=33	max_min_left_minus=33	max_min_left_plus=33	max_min_right=33	max_min_right_minus=32	max_min_right_plus=33	max_pos_hash_score=114	max_right=62	max_right_minus=62	max_right_plus=62	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.10	new_junction_frequency=1.000000e+00	new_junction_read_count=151	pos_hash_score=83	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=151	unique_read_sequence=CTATTGCAATACCGCATTGTGAGGCGATTCATG
JC	3265	.	NC_007779	380484	1	NC_007779	381407	-1	0	alignment_overlap=0	coverage_minus=101	coverage_plus=116	flanking_left=101	flanking_right=101	frequency=NA	junction_possible_overlap_registers=90	key=NC_007779__380484__1__NC_007779__381407__-1__0____101__101__1__1	max_left=95	max_left_minus=90	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=47	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=94	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.01	new_junction_frequency=NA	new_junction_read_count=217	pos_hash_score=116	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=217
JC	3266	.	NC_007779	381401	1	NC_007779	381812	-1	0	alignment_overlap=2	coverage_minus=102	coverage_plus=118	flanking_left=101	flanking_right=101	frequency=NA	junction_possible_overlap_registers=88	key=NC_007779__381401__1__NC_007779__381814__-1__2____101__101__1__1	max_left=93	max_left_minus=92	max_left_plus=93	max_min_left=49	max_min_left_minus=47	max_min_left_plus=49	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=176	max_right=93	max_right_minus=93	max_right_plus=92	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.05	new_junction_frequency=NA	new_junction_read_count=221	pos_hash_score=114	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=220
JC	3267	.	NC_007779	608570	-1	NC_007779	1305025	1	0	alignment_overlap=3	coverage_minus=56	coverage_plus=81	flanking_left=101	flanking_right=101	frequency=6.408669e-01	junction_possible_overlap_registers=87	key=NC_007779__608573__-1__NC_007779__1305025__1__3____101__101__1__0	max_left=92	max_left_minus=92	max_left_plus=92	max_min_left=48	max_min_left_minus=48	max_min_left_plus=48	max_min_right=49	max_min_right_minus=48	max_min_right_plus=49	max_pos_hash_score=174	max_right=92	max_right_minus=92	max_right_plus=91	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.66	new_junction_frequency=6.408669e-01	new_junction_read_count=138	pos_hash_score=92	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.37	side_2_overlap=3	side_2_possible_overlap_registers=90	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=137
JC	3268	.	NC_007779	654213	-1	NC_007779	655413	1	0	alignment_overlap=5	coverage_minus=102	coverage_plus=105	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=85	key=NC_007779__654213__-1__NC_007779__655408__1__5____101__101__0__0	max_left=90	max_left_minus=89	max_left_plus=90	max_min_left=47	max_min_left_minus=46	max_min_left_plus=47	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=170	max_right=90	max_right_minus=90	max_right_plus=90	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.02	new_junction_frequency=1.000000e+00	new_junction_read_count=207	pos_hash_score=112	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=85	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=207
JC	3269	.	NC_007779	1209367	1	NC_007779	1211196	1	0	alignment_overlap=16	coverage_minus=37	coverage_plus=48	flanking_left=101	flanking_right=101	frequency=5.244036e-01	junction_possible_overlap_registers=74	key=NC_007779__1209367__1__NC_007779__1211180__1__16____101__101__0__0	max_left=79	max_left_minus=78	max_left_plus=79	max_min_left=42	max_min_left_minus=42	max_min_left_plus=42	max_min_right=39	max_min_right_minus=39	max_min_right_plus=36	max_pos_hash_score=148	max_right=79	max_right_minus=79	max_right_plus=77	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.48	new_junction_frequency=5.244036e-01	new_junction_read_count=85	pos_hash_score=66	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.41	side_1_overlap=16	side_1_possible_overlap_registers=90	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.46	side_2_overlap=0	side_2_possible_overlap_registers=74	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=85
JC	3270	.	NC_007779	1209382	-1	NC_007779	1211179	-1	0	alignment_overlap=16	coverage_minus=43	coverage_plus=42	flanking_left=101	flanking_right=101	frequency=5.204436e-01	junction_possible_overlap_registers=74	key=NC_007779__1209382__-1__NC_007779__1211195__-1__16____101__101__0__0	max_left=79	max_left_minus=79	max_left_plus=78	max_min_left=42	max_min_left_minus=42	max_min_left_plus=42	max_min_right=42	max_min_right_minus=39	max_min_right_plus=42	max_pos_hash_score=148	max_right=79	max_right_minus=78	max_right_plus=79	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.48	new_junction_frequency=5.204436e-01	new_junction_read_count=85	pos_hash_score=67	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.43	side_1_overlap=16	side_1_possible_overlap_registers=90	side_1_read_count=92	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.46	side_2_overlap=0	side_2_possible_overlap_registers=74	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=85
JC	3271	.	NC_007779	1221489	1	NC_007779	1301041	1	0	alignment_overlap=2	coverage_minus=85	coverage_plus=102	flanking_left=101	flanking_right=101	frequency=9.845560e-01	junction_possible_overlap_registers=88	key=NC_007779__1221489__1__NC_007779__1301039__1__2____101__101__0__1	max_left=93	max_left_minus=93	max_left_plus=93	max_min_left=49	max_min_left_minus=48	max_min_left_plus=49	max_min_right=49	max_min_right_minus=49	max_min_right_plus=48	max_pos_hash_score=176	max_right=85	max_right_minus=83	max_right_plus=85	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.89	new_junction_frequency=9.845560e-01	new_junction_read_count=187	pos_hash_score=102	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=2	side_1_possible_overlap_registers=90	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=187
JC	3272	.	NC_007779	1221495	-1	NC_007779	1302369	-1	0	alignment_overlap=0	coverage_minus=101	coverage_plus=97	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__1221495__-1__NC_007779__1302369__-1__0____101__101__0__1	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=50	max_min_left_minus=49	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.92	new_junction_frequency=1.000000e+00	new_junction_read_count=199	pos_hash_score=115	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=198
JC	3273	.	NC_007779	1301040	-1	NC_007779	1302377	1	0	alignment_overlap=7	coverage_minus=95	coverage_plus=72	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=83	key=NC_007779__1301040__-1__NC_007779__1302370__1__7____101__101__0__0	max_left=88	max_left_minus=87	max_left_plus=88	max_min_left=46	max_min_left_minus=46	max_min_left_plus=44	max_min_right=46	max_min_right_minus=46	max_min_right_plus=46	max_pos_hash_score=166	max_right=88	max_right_minus=88	max_right_plus=88	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.84	new_junction_frequency=1.000000e+00	new_junction_read_count=168	pos_hash_score=105	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=7	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=83	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=167
JC	3274	.	NC_007779	1305037	-1	NC_007779	2519723	1	0	alignment_overlap=4	coverage_minus=65	coverage_plus=76	flanking_left=101	flanking_right=101	frequency=6.529069e-01	junction_possible_overlap_registers=86	key=NC_007779__1305037__-1__NC_007779__2519719__1__4____101__101__0__1	max_left=91	max_left_minus=91	max_left_plus=91	max_min_left=47	max_min_left_minus=45	max_min_left_plus=47	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=172	max_right=91	max_right_minus=91	max_right_plus=91	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.69	new_junction_frequency=6.529069e-01	new_junction_read_count=142	pos_hash_score=89	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.37	side_1_overlap=4	side_1_possible_overlap_registers=90	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=141
JC	3275	.	NC_007779	1397758	1	NC_007779	1672777	1	0	alignment_overlap=0	coverage_minus=74	coverage_plus=84	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__1397758__1__NC_007779__1672777__1__0____101__101__1__0	max_left=87	max_left_minus=87	max_left_plus=87	max_min_left=50	max_min_left_minus=50	max_min_left_plus=48	max_min_right=50	max_min_right_minus=50	max_min_right_plus=49	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.73	new_junction_frequency=1.000000e+00	new_junction_read_count=158	pos_hash_score=93	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=158
JC	3276	.	NC_007779	1413638	-1	NC_007779	1436699	1	0	alignment_overlap=26	coverage_minus=75	coverage_plus=98	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=64	key=NC_007779__1413638__-1__NC_007779__1436673__1__26____101__101__0__0	max_left=69	max_left_minus=69	max_left_plus=68	max_min_left=37	max_min_left_minus=35	max_min_left_plus=37	max_min_right=37	max_min_right_minus=37	max_min_right_plus=37	max_pos_hash_score=128	max_right=69	max_right_minus=69	max_right_plus=69	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.13	new_junction_frequency=1.000000e+00	new_junction_read_count=174	pos_hash_score=96	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=64	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=173
JC	3277	.	NC_007779	1672780	-1	NC_007779	1980209	1	0	alignment_overlap=0	coverage_minus=95	coverage_plus=99	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__1672780__-1__NC_007779__1980209__1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=94	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=85	max_right_minus=81	max_right_plus=85	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.90	new_junction_frequency=1.000000e+00	new_junction_read_count=195	pos_hash_score=110	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=194
JC	3278	.	NC_007779	1907280	1	NC_007779	2412225	-1	0	alignment_overlap=0	coverage_minus=112	coverage_plus=94	flanking_left=101	flanking_right=101	frequency=9.626168e-01	junction_possible_overlap_registers=90	key=NC_007779__1907280__1__NC_007779__2412225__-1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=49	max_min_left_minus=49	max_min_left_plus=48	max_min_right=50	max_min_right_minus=48	max_min_right_plus=50	max_pos_hash_score=180	max_right=88	max_right_minus=88	max_right_plus=87	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.95	new_junction_frequency=9.626168e-01	new_junction_read_count=206	pos_hash_score=110	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=8	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=206
JC	3279	.	NC_007779	1907288	-1	NC_007779	2411458	1	0	alignment_overlap=0	coverage_minus=79	coverage_plus=108	flanking_left=101	flanking_right=101	frequency=9.739583e-01	junction_possible_overlap_registers=90	key=NC_007779__1907288__-1__NC_007779__2411458__1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=49	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.87	new_junction_frequency=9.739583e-01	new_junction_read_count=187	pos_hash_score=110	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=5	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=187
JC	3280	.	NC_007779	1980091	1	NC_007779	1980209	1	0	alignment_overlap=0	coverage_minus=106	coverage_plus=42	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__1980091__1__NC_007779__1980209__1__0____101__101__0__1	max_left=95	max_left_minus=94	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=49	max_min_right=50	max_min_right_minus=50	max_min_right_plus=40	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=91	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.70	new_junction_frequency=1.000000e+00	new_junction_read_count=152	pos_hash_score=93	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=148
JC	3281	.	NC_007779	1980095	-1	NC_007779	2176984	1	0	alignment_overlap=1	coverage_minus=101	coverage_plus=92	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=89	key=NC_007779__1980095__-1__NC_007779__2176983__1__1____101__101__0__1	max_left=94	max_left_minus=92	max_left_plus=94	max_min_left=49	max_min_left_minus=48	max_min_left_plus=49	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=178	max_right=92	max_right_minus=91	max_right_plus=92	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.90	new_junction_frequency=1.000000e+00	new_junction_read_count=193	pos_hash_score=118	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=193
JC	3282	.	NC_007779	2071081	1	NC_007779	2072412	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=5	flanking_left=101	flanking_right=101	frequency=2.696225e-02	junction_possible_overlap_registers=87	key=NC_007779__2071078__1__NC_007779__2072412__-1__3____101__101__1__0	max_left=77	max_left_minus=19	max_left_plus=77	max_min_left=40	max_min_left_minus=19	max_min_left_plus=40	max_min_right=44	max_min_right_minus=0	max_min_right_plus=44	max_pos_hash_score=174	max_right=84	max_right_minus=79	max_right_plus=84	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.03	new_junction_frequency=2.696225e-02	new_junction_read_count=6	pos_hash_score=6	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=3	side_2_possible_overlap_registers=90	side_2_read_count=224	side_2_redundant=0	total_non_overlap_reads=6
JC	3283	.	NC_007779	2178209	1	NC_007779	2412225	-1	0	alignment_overlap=0	coverage_minus=101	coverage_plus=99	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__2178209__1__NC_007779__2412225__-1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=47	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=93	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.94	new_junction_frequency=1.000000e+00	new_junction_read_count=203	pos_hash_score=126	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=200
JC	3284	.	NC_007779	2320794	-1	NC_007779	2322131	1	0	alignment_overlap=6	coverage_minus=71	coverage_plus=98	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=84	key=NC_007779__2320794__-1__NC_007779__2322125__1__6____101__101__0__0	max_left=89	max_left_minus=89	max_left_plus=89	max_min_left=46	max_min_left_minus=45	max_min_left_plus=46	max_min_right=47	max_min_right_minus=47	max_min_right_plus=46	max_pos_hash_score=168	max_right=89	max_right_minus=89	max_right_plus=89	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.84	new_junction_frequency=1.000000e+00	new_junction_read_count=169	pos_hash_score=104	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=84	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=169
JC	3285	.	NC_007779	2320794	1	NC_007779	2589834	-1	0	alignment_overlap=0	coverage_minus=59	coverage_plus=132	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__2320794__1__NC_007779__2589834__-1__0____101__101__1__0	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.88	new_junction_frequency=1.000000e+00	new_junction_read_count=191	pos_hash_score=108	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=191
JC	3286	.	NC_007779	2322124	-1	NC_007779	2589830	1	0	alignment_overlap=0	coverage_minus=83	coverage_plus=123	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__2322124__-1__NC_007779__2589830__1__0____101__101__1__0	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=49	max_min_left_plus=50	max_min_right=50	max_min_right_minus=49	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.95	new_junction_frequency=1.000000e+00	new_junction_read_count=206	pos_hash_score=116	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=206
JC	3287	.	NC_007779	2411458	1	NC_007779	2941519	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=6	flanking_left=101	flanking_right=101	frequency=3.781513e-02	junction_possible_overlap_registers=90	key=NC_007779__2411458__1__NC_007779__2941519__1__0____101__101__1__0	max_left=76	max_left_minus=65	max_left_plus=76	max_min_left=50	max_min_left_minus=0	max_min_left_plus=50	max_min_right=42	max_min_right_minus=42	max_min_right_plus=28	max_pos_hash_score=180	max_right=95	max_right_minus=42	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.04	new_junction_frequency=3.781513e-02	new_junction_read_count=9	pos_hash_score=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=229	side_2_redundant=0	total_non_overlap_reads=9
JC	3288	.	NC_007779	2411458	1	NC_007779	2985055	-1	0	alignment_overlap=0	coverage_minus=108	coverage_plus=91	flanking_left=101	flanking_right=101	frequency=9.521531e-01	junction_possible_overlap_registers=90	key=NC_007779__2411458__1__NC_007779__2985055__-1__0____101__101__1__0	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=49	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=94	max_right_minus=94	max_right_plus=93	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.92	new_junction_frequency=9.521531e-01	new_junction_read_count=199	pos_hash_score=117	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=10	side_2_redundant=0	total_non_overlap_reads=199
JC	3289	.	NC_007779	2412225	-1	NC_007779	2941527	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=7	flanking_left=101	flanking_right=101	frequency=5.306122e-02	junction_possible_overlap_registers=90	key=NC_007779__2412225__-1__NC_007779__2941527__-1__0____101__101__1__0	max_left=87	max_left_minus=70	max_left_plus=87	max_min_left=50	max_min_left_minus=37	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=43	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=63	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.06	new_junction_frequency=5.306122e-02	new_junction_read_count=13	pos_hash_score=13	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=232	side_2_redundant=0	total_non_overlap_reads=13
JC	3290	.	NC_007779	2412225	-1	NC_007779	2985047	1	0	alignment_overlap=0	coverage_minus=89	coverage_plus=87	flanking_left=101	flanking_right=101	frequency=9.673913e-01	junction_possible_overlap_registers=90	key=NC_007779__2412225__-1__NC_007779__2985047__1__0____101__101__1__0	max_left=87	max_left_minus=87	max_left_plus=84	max_min_left=49	max_min_left_minus=49	max_min_left_plus=49	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=93	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.82	new_junction_frequency=9.673913e-01	new_junction_read_count=178	pos_hash_score=106	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=6	side_2_redundant=0	total_non_overlap_reads=176
JC	3291	.	NC_007779	2519723	1	NC_007779	3175156	1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=2	flanking_left=101	flanking_right=101	frequency=1.494024e-02	junction_possible_overlap_registers=86	key=NC_007779__2519719__1__NC_007779__3175156__1__4____101__101__1__0	max_left=57	max_left_minus=57	max_left_plus=24	max_min_left=24	max_min_left_minus=0	max_min_left_plus=24	max_min_right=40	max_min_right_minus=40	max_min_right_plus=0	max_pos_hash_score=172	max_right=90	max_right_minus=40	max_right_plus=90	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.01	new_junction_frequency=1.494024e-02	new_junction_read_count=3	pos_hash_score=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=4	side_2_possible_overlap_registers=90	side_2_read_count=207	side_2_redundant=0	total_non_overlap_reads=3
JC	3292	.	NC_007779	2521057	-1	NC_007779	3175170	-1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=1	flanking_left=101	flanking_right=101	frequency=1.574528e-02	junction_possible_overlap_registers=87	key=NC_007779__2521060__-1__NC_007779__3175170__-1__3____101__101__1__0	max_left=68	max_left_minus=54	max_left_plus=68	max_min_left=19	max_min_left_minus=19	max_min_left_plus=0	max_min_right=44	max_min_right_minus=44	max_min_right_plus=30	max_pos_hash_score=174	max_right=79	max_right_minus=79	max_right_plus=30	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.01	new_junction_frequency=1.574528e-02	new_junction_read_count=3	pos_hash_score=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=3	side_2_possible_overlap_registers=90	side_2_read_count=194	side_2_redundant=0	total_non_overlap_reads=3
JC	3293	.	NC_007779	2865229	1	NC_007779	2865274	-1	0	alignment_overlap=4	coverage_minus=102	coverage_plus=96	flanking_left=101	flanking_right=101	frequency=7.063255e-01	junction_possible_overlap_registers=86	key=NC_007779__2865229__1__NC_007779__2865278__-1__4____101__101__0__0	max_left=91	max_left_minus=91	max_left_plus=90	max_min_left=46	max_min_left_minus=46	max_min_left_plus=46	max_min_right=46	max_min_right_minus=46	max_min_right_plus=45	max_pos_hash_score=172	max_right=91	max_right_minus=91	max_right_plus=91	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.21	new_junction_frequency=7.063255e-01	new_junction_read_count=250	pos_hash_score=118	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=4	side_1_possible_overlap_registers=90	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=86	side_2_read_count=98	side_2_redundant=0	total_non_overlap_reads=198
JC	3294	.	NC_007779	2865229	1	NC_007779	2865278	-1	-42	alignment_overlap=-42	coverage_minus=31	coverage_plus=27	flanking_left=101	flanking_right=101	frequency=4.926387e-01	junction_possible_overlap_registers=48	key=NC_007779__2865229__1__NC_007779__2865278__-1__-42__CGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAA__101__101__0__0	max_left=42	max_left_minus=41	max_left_plus=42	max_min_left=29	max_min_left_minus=29	max_min_left_plus=29	max_min_right=29	max_min_right_minus=29	max_min_right_plus=29	max_pos_hash_score=96	max_right=44	max_right_minus=44	max_right_plus=44	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.50	new_junction_frequency=4.926387e-01	new_junction_read_count=58	pos_hash_score=34	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=115	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.50	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=109	side_2_redundant=0	total_non_overlap_reads=58	unique_read_sequence=CGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAA
JC	3295	.	NC_007779	3147474	1	NC_007779	3262328	-1	0	alignment_overlap=0	coverage_minus=104	coverage_plus=108	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3147474__1__NC_007779__3262328__-1__0____101__101__0__1	max_left=94	max_left_minus=93	max_left_plus=94	max_min_left=50	max_min_left_minus=50	max_min_left_plus=49	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=92	max_right_minus=92	max_right_plus=86	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.98	new_junction_frequency=1.000000e+00	new_junction_read_count=212	pos_hash_score=123	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=212
JC	3296	.	NC_007779	3174999	-1	NC_007779	3175003	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=3	flanking_left=101	flanking_right=101	frequency=1.074169e-01	junction_possible_overlap_registers=90	key=NC_007779__3174999__-1__NC_007779__3175003__1__0____101__101__0__0	max_left=90	max_left_minus=90	max_left_plus=73	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=39	max_min_right_minus=11	max_min_right_plus=39	max_pos_hash_score=162	max_right=93	max_right_minus=11	max_right_plus=93	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.10	new_junction_frequency=1.074169e-01	new_junction_read_count=21	pos_hash_score=4	side_1_annotate_key=gene	side_1_continuation=9	side_1_coverage=0.79	side_1_overlap=0	side_1_possible_overlap_registers=81	side_1_read_count=153	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=179	side_2_redundant=0	total_non_overlap_reads=4
JC	3297	.	NC_007779	3186081	-1	NC_007779	3512753	1	0	alignment_overlap=1	coverage_minus=51	coverage_plus=42	flanking_left=101	flanking_right=101	frequency=4.542248e-01	junction_possible_overlap_registers=89	key=NC_007779__3186082__-1__NC_007779__3512753__1__1____101__101__1__0	max_left=83	max_left_minus=82	max_left_plus=83	max_min_left=48	max_min_left_minus=48	max_min_left_plus=48	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=178	max_right=94	max_right_minus=94	max_right_plus=91	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.44	new_junction_frequency=4.542248e-01	new_junction_read_count=93	pos_hash_score=67	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.52	side_2_overlap=1	side_2_possible_overlap_registers=90	side_2_read_count=113	side_2_redundant=0	total_non_overlap_reads=93
JC	3298	.	NC_007779	3261133	-1	NC_007779	3748109	-1	-6	alignment_overlap=-6	coverage_minus=134	coverage_plus=90	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=84	key=NC_007779__3261133__-1__NC_007779__3748109__-1__-6__CTTTGC__101__101__0__1	max_left=89	max_left_minus=89	max_left_plus=87	max_min_left=47	max_min_left_minus=47	max_min_left_plus=47	max_min_right=47	max_min_right_minus=47	max_min_right_plus=47	max_pos_hash_score=168	max_right=89	max_right_minus=89	max_right_plus=87	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.11	new_junction_frequency=1.000000e+00	new_junction_read_count=224	pos_hash_score=117	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=224	unique_read_sequence=CTTTGC
JC	3299	.	NC_007779	3261134	1	NC_007779	3265774	1	0	alignment_overlap=0	coverage_minus=81	coverage_plus=89	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3261134__1__NC_007779__3265774__1__0____101__101__1__0	max_left=87	max_left_minus=84	max_left_plus=87	max_min_left=50	max_min_left_minus=49	max_min_left_plus=50	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.79	new_junction_frequency=1.000000e+00	new_junction_read_count=170	pos_hash_score=99	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=170
JC	3300	.	NC_007779	3261135	1	NC_007779	3262338	1	0	alignment_overlap=1	coverage_minus=94	coverage_plus=131	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=89	key=NC_007779__3261134__1__NC_007779__3262338__1__1____101__101__1__0	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=48	max_min_left_minus=47	max_min_left_plus=48	max_min_right=50	max_min_right_minus=47	max_min_right_plus=50	max_pos_hash_score=178	max_right=94	max_right_minus=94	max_right_plus=94	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.05	new_junction_frequency=1.000000e+00	new_junction_read_count=225	pos_hash_score=115	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=225
JC	3301	.	NC_007779	3265777	-1	NC_007779	3365411	1	0	alignment_overlap=0	coverage_minus=132	coverage_plus=107	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3265777__-1__NC_007779__3365411__1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=93	max_min_left=50	max_min_left_minus=50	max_min_left_plus=48	max_min_right=50	max_min_right_minus=50	max_min_right_plus=49	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.11	new_junction_frequency=1.000000e+00	new_junction_read_count=240	pos_hash_score=131	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=239
JC	3302	.	NC_007779	3342929	-1	NC_007779	3342933	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=1	flanking_left=101	flanking_right=101	frequency=2.931351e-02	junction_possible_overlap_registers=90	key=NC_007779__3342929__-1__NC_007779__3342933__1__0____101__101__0__0	max_left=95	max_left_minus=95	max_left_plus=18	max_min_left=46	max_min_left_minus=46	max_min_left_plus=18	max_min_right=42	max_min_right_minus=42	max_min_right_plus=0	max_pos_hash_score=178	max_right=83	max_right_minus=55	max_right_plus=83	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.03	new_junction_frequency=2.931351e-02	new_junction_read_count=7	pos_hash_score=7	side_1_annotate_key=gene	side_1_continuation=1	side_1_coverage=1.08	side_1_overlap=0	side_1_possible_overlap_registers=89	side_1_read_count=231	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=230	side_2_redundant=0	total_non_overlap_reads=7
JC	3303	.	NC_007779	3512759	-1	NC_007779	3744262	-1	0	alignment_overlap=1	coverage_minus=41	coverage_plus=58	flanking_left=101	flanking_right=101	frequency=4.675693e-01	junction_possible_overlap_registers=89	key=NC_007779__3512759__-1__NC_007779__3744263__-1__1____101__101__0__1	max_left=94	max_left_minus=93	max_left_plus=94	max_min_left=49	max_min_left_minus=45	max_min_left_plus=49	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=178	max_right=85	max_right_minus=85	max_right_plus=84	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.46	new_junction_frequency=4.675693e-01	new_junction_read_count=99	pos_hash_score=76	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=1	side_1_possible_overlap_registers=90	side_1_read_count=114	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=99
JC	3304	.	NC_007779	3742935	-1	NC_007779	3744272	1	0	alignment_overlap=8	coverage_minus=98	coverage_plus=108	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=82	key=NC_007779__3742935__-1__NC_007779__3744264__1__8____101__101__0__0	max_left=87	max_left_minus=87	max_left_plus=86	max_min_left=46	max_min_left_minus=45	max_min_left_plus=46	max_min_right=46	max_min_right_minus=46	max_min_right_plus=46	max_pos_hash_score=164	max_right=87	max_right_minus=87	max_right_plus=87	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.05	new_junction_frequency=1.000000e+00	new_junction_read_count=206	pos_hash_score=119	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=82	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=206
JC	3305	.	NC_007779	3744263	-1	NC_007779	3903274	1	0	alignment_overlap=0	coverage_minus=129	coverage_plus=117	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3744263__-1__NC_007779__3903274__1__0____101__101__1__0	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.14	new_junction_frequency=1.000000e+00	new_junction_read_count=247	pos_hash_score=131	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=246
JC	3306	.	NC_007779	3746910	-1	NC_007779	3748110	1	0	alignment_overlap=4	coverage_minus=134	coverage_plus=105	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=86	key=NC_007779__3746910__-1__NC_007779__3748106__1__4____101__101__0__0	max_left=91	max_left_minus=91	max_left_plus=91	max_min_left=48	max_min_left_minus=47	max_min_left_plus=48	max_min_right=48	max_min_right_minus=48	max_min_right_plus=45	max_pos_hash_score=172	max_right=91	max_right_minus=90	max_right_plus=91	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.16	new_junction_frequency=1.000000e+00	new_junction_read_count=240	pos_hash_score=131	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=86	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=239
JC	3307	.	NC_007779	3746911	1	NC_007779	3748646	-1	0	alignment_overlap=0	coverage_minus=112	coverage_plus=125	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3746911__1__NC_007779__3748646__-1__0____101__101__1__0	max_left=92	max_left_minus=92	max_left_plus=92	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=49	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.24	new_junction_frequency=1.000000e+00	new_junction_read_count=268	pos_hash_score=128	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=237
JC	3308	.	NC_007779	3748105	-1	NC_007779	3748643	1	0	alignment_overlap=0	coverage_minus=128	coverage_plus=124	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3748105__-1__NC_007779__3748643__1__0____101__101__1__0	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=50	max_min_right_minus=46	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.17	new_junction_frequency=1.000000e+00	new_junction_read_count=253	pos_hash_score=130	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=252
JC	3309	.	NC_007779	3750590	-1	NC_007779	3751790	1	0	alignment_overlap=4	coverage_minus=101	coverage_plus=121	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=86	key=NC_007779__3750590__-1__NC_007779__3751786__1__4____101__101__0__0	max_left=91	max_left_minus=91	max_left_plus=91	max_min_left=48	max_min_left_minus=48	max_min_left_plus=46	max_min_right=48	max_min_right_minus=48	max_min_right_plus=48	max_pos_hash_score=172	max_right=91	max_right_minus=91	max_right_plus=91	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.09	new_junction_frequency=1.000000e+00	new_junction_read_count=224	pos_hash_score=124	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=86	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=222
JC	3310	.	NC_007779	3903279	-1	NC_007779	4504190	-1	0	alignment_overlap=1	coverage_minus=118	coverage_plus=122	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=89	key=NC_007779__3903279__-1__NC_007779__4504191__-1__1____101__101__0__1	max_left=94	max_left_minus=94	max_left_plus=94	max_min_left=49	max_min_left_minus=49	max_min_left_plus=49	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=178	max_right=94	max_right_minus=94	max_right_plus=93	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.13	new_junction_frequency=1.000000e+00	new_junction_read_count=242	pos_hash_score=124	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=240
JC	3311	.	NC_007779	3958122	-1	NC_007779	3958157	1	0	alignment_overlap=2	coverage_minus=115	coverage_plus=114	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=88	key=NC_007779__3958122__-1__NC_007779__3958155__1__2____101__101__0__0	max_left=93	max_left_minus=93	max_left_plus=93	max_min_left=49	max_min_left_minus=49	max_min_left_plus=46	max_min_right=49	max_min_right_minus=47	max_min_right_plus=49	max_pos_hash_score=176	max_right=93	max_right_minus=93	max_right_plus=93	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.09	new_junction_frequency=1.000000e+00	new_junction_read_count=230	pos_hash_score=129	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=88	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=229
JC	3312	.	NC_007779	3987186	1	NC_007779	4009203	-1	0	alignment_overlap=1	coverage_minus=105	coverage_plus=102	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=89	key=NC_007779__3987185__1__NC_007779__4009203__-1__1____101__101__1__0	max_left=94	max_left_minus=94	max_left_plus=93	max_min_left=48	max_min_left_minus=48	max_min_left_plus=48	max_min_right=50	max_min_right_minus=50	max_min_right_plus=48	max_pos_hash_score=178	max_right=94	max_right_minus=93	max_right_plus=94	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.97	new_junction_frequency=1.000000e+00	new_junction_read_count=208	pos_hash_score=113	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=207
JC	3313	.	NC_007779	3988379	-1	NC_007779	4009199	1	0	alignment_overlap=0	coverage_minus=97	coverage_plus=100	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__3988379__-1__NC_007779__4009199__1__0____101__101__1__0	max_left=88	max_left_minus=88	max_left_plus=87	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=49	max_min_right_minus=47	max_min_right_plus=49	max_pos_hash_score=180	max_right=95	max_right_minus=94	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.91	new_junction_frequency=1.000000e+00	new_junction_read_count=197	pos_hash_score=114	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=197
JC	3314	.	NC_007779	4310362	-1	NC_007779	4311562	1	0	alignment_overlap=4	coverage_minus=115	coverage_plus=107	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=86	key=NC_007779__4310362__-1__NC_007779__4311558__1__4____101__101__0__0	max_left=91	max_left_minus=91	max_left_plus=91	max_min_left=48	max_min_left_minus=48	max_min_left_plus=48	max_min_right=48	max_min_right_minus=47	max_min_right_plus=48	max_pos_hash_score=172	max_right=91	max_right_minus=91	max_right_plus=89	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.08	new_junction_frequency=1.000000e+00	new_junction_read_count=223	pos_hash_score=122	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=90	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=86	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=222
JC	3315	.	NC_007779	4310363	1	NC_007779	4353540	1	0	alignment_overlap=0	coverage_minus=114	coverage_plus=113	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__4310363__1__NC_007779__4353540__1__0____101__101__1__0	max_left=93	max_left_minus=93	max_left_plus=92	max_min_left=50	max_min_left_minus=50	max_min_left_plus=50	max_min_right=49	max_min_right_minus=49	max_min_right_plus=48	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=94	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.06	new_junction_frequency=1.000000e+00	new_junction_read_count=229	pos_hash_score=124	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=227
JC	3316	.	NC_007779	4311557	-1	NC_007779	4353543	-1	0	alignment_overlap=0	coverage_minus=114	coverage_plus=137	flanking_left=101	flanking_right=101	frequency=1.000000e+00	junction_possible_overlap_registers=90	key=NC_007779__4311557__-1__NC_007779__4353543__-1__0____101__101__1__0	max_left=93	max_left_minus=93	max_left_plus=93	max_min_left=50	max_min_left_minus=48	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=95	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.38	new_junction_frequency=1.000000e+00	new_junction_read_count=298	pos_hash_score=137	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=90	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=251
JC	3317	.	NC_007779	4355060	1	NC_007779	4502861	1	0	alignment_overlap=0	coverage_minus=120	coverage_plus=133	flanking_left=101	flanking_right=101	frequency=9.921875e-01	junction_possible_overlap_registers=90	key=NC_007779__4355060__1__NC_007779__4502861__1__0____101__101__0__1	max_left=95	max_left_minus=95	max_left_plus=95	max_min_left=50	max_min_left_minus=49	max_min_left_plus=50	max_min_right=50	max_min_right_minus=50	max_min_right_plus=50	max_pos_hash_score=180	max_right=95	max_right_minus=91	max_right_plus=95	neg_log10_pos_hash_p_value=NT	new_junction_coverage=1.18	new_junction_frequency=9.921875e-01	new_junction_read_count=254	pos_hash_score=131	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=90	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=253
JC	3318	.	NC_007779	4355066	-1	NC_007779	4504189	-1	0	alignment_overlap=2	coverage_minus=113	coverage_plus=95	flanking_left=101	flanking_right=101	frequency=9.815436e-01	junction_possible_overlap_registers=88	key=NC_007779__4355066__-1__NC_007779__4504191__-1__2____101__101__0__1	max_left=93	max_left_minus=93	max_left_plus=93	max_min_left=49	max_min_left_minus=49	max_min_left_plus=48	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=176	max_right=93	max_right_minus=93	max_right_plus=93	neg_log10_pos_hash_p_value=NT	new_junction_coverage=0.99	new_junction_frequency=9.815436e-01	new_junction_read_count=208	pos_hash_score=118	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=2	side_1_possible_overlap_registers=90	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=208
UN	3319	.	NC_007779	15485	16634
UN	3320	.	NC_007779	19894	20466
UN	3321	.	NC_007779	223635	223644
UN	3322	.	NC_007779	223840	224675
UN	3323	.	NC_007779	224989	225489
UN	3324	.	NC_007779	225836	225924
UN	3325	.	NC_007779	226121	226203
UN	3326	.	NC_007779	226396	226505
UN	3327	.	NC_007779	226698	226871
UN	3328	.	NC_007779	227085	228591
UN	3329	.	NC_007779	228785	228911
UN	3330	.	NC_007779	269859	270420
UN	3331	.	NC_007779	270704	270710
UN	3332	.	NC_007779	273277	274275
UN	3333	.	NC_007779	274733	329640
UN	3334	.	NC_007779	329738	371972
UN	3335	.	NC_007779	380574	381723
UN	3336	.	NC_007779	391029	392101
UN	3337	.	NC_007779	525194	525850
UN	3338	.	NC_007779	566089	567171
UN	3339	.	NC_007779	573905	574918
UN	3340	.	NC_007779	580439	580490
UN	3341	.	NC_007779	607328	608476
UN	3342	.	NC_007779	654214	655412
UN	3343	.	NC_007779	688366	689377
UN	3344	.	NC_007779	730322	730467
UN	3345	.	NC_007779	730827	730860
UN	3346	.	NC_007779	732510	732614
UN	3347	.	NC_007779	733124	733151
UN	3348	.	NC_007779	734994	735022
UN	3349	.	NC_007779	1050345	1050399
UN	3350	.	NC_007779	1050559	1050736
UN	3351	.	NC_007779	1094763	1095829
UN	3352	.	NC_007779	1105718	1106860
UN	3353	.	NC_007779	1270768	1270802
UN	3354	.	NC_007779	1271823	1271869
UN	3355	.	NC_007779	1288372	1288460
UN	3356	.	NC_007779	1301041	1302376
UN	3357	.	NC_007779	1397850	1398859
UN	3358	.	NC_007779	1413639	1436698
UN	3359	.	NC_007779	1469719	1470864
UN	3360	.	NC_007779	1471104	1472139
UN	3361	.	NC_007779	1530135	1530792
UN	3362	.	NC_007779	1533980	1534024
UN	3363	.	NC_007779	1572480	1572486
UN	3364	.	NC_007779	1572677	1572963
UN	3365	.	NC_007779	1573217	1573420
UN	3366	.	NC_007779	1634762	1634838
UN	3367	.	NC_007779	1635028	1635244
UN	3368	.	NC_007779	1635440	1635539
UN	3369	.	NC_007779	1635910	1636254
UN	3370	.	NC_007779	1636450	1636638
UN	3371	.	NC_007779	1637648	1637699
UN	3372	.	NC_007779	1652653	1653166
UN	3373	.	NC_007779	1980303	1981311
UN	3374	.	NC_007779	2068409	2068504
UN	3375	.	NC_007779	2068701	2068747
UN	3376	.	NC_007779	2068961	2069339
UN	3377	.	NC_007779	2071175	2072316
UN	3378	.	NC_007779	2103980	2104990
UN	3379	.	NC_007779	2172403	2173467
UN	3380	.	NC_007779	2176983	2178208
UN	3381	.	NC_007779	2292347	2293350
UN	3382	.	NC_007779	2308005	2308023
UN	3383	.	NC_007779	2308231	2308249
UN	3384	.	NC_007779	2320795	2322130
UN	3385	.	NC_007779	2411554	2412129
UN	3386	.	NC_007779	2519817	2520966
UN	3387	.	NC_007779	2724816	2727806
UN	3388	.	NC_007779	2728091	2728121
UN	3389	.	NC_007779	2728321	2729508
UN	3390	.	NC_007779	2729832	2729932
UN	3391	.	NC_007779	2995113	2996257
UN	3392	.	NC_007779	3128895	3147473
UN	3393	.	NC_007779	3184842	3185986
UN	3394	.	NC_007779	3261134	3262337
UN	3395	.	NC_007779	3365504	3366515
UN	3396	.	NC_007779	3423612	3424411
UN	3397	.	NC_007779	3424606	3426562
UN	3398	.	NC_007779	3426758	3426848
UN	3399	.	NC_007779	3427045	3428593
UN	3400	.	NC_007779	3459669	3460046
UN	3401	.	NC_007779	3460237	3460349
UN	3402	.	NC_007779	3465132	3468011
UN	3403	.	NC_007779	3468300	3468330
UN	3404	.	NC_007779	3468559	3470290
UN	3405	.	NC_007779	3596171	3597193
UN	3406	.	NC_007779	3597394	3597855
UN	3407	.	NC_007779	3598088	3598748
UN	3408	.	NC_007779	3598944	3599188
UN	3409	.	NC_007779	3599298	3599491
UN	3410	.	NC_007779	3599687	3600848
UN	3411	.	NC_007779	3600853	3600853
UN	3412	.	NC_007779	3601043	3601421
UN	3413	.	NC_007779	3689826	3689895
UN	3414	.	NC_007779	3690160	3690355
UN	3415	.	NC_007779	3690552	3690668
UN	3416	.	NC_007779	3690874	3691015
UN	3417	.	NC_007779	3691208	3692525
UN	3418	.	NC_007779	3692789	3693189
UN	3419	.	NC_007779	3693381	3694550
UN	3420	.	NC_007779	3694746	3694931
UN	3421	.	NC_007779	3742936	3744271
UN	3422	.	NC_007779	3746911	3748109
UN	3423	.	NC_007779	3750591	3751789
UN	3424	.	NC_007779	3874863	3874904
UN	3425	.	NC_007779	3875223	3876241
UN	3426	.	NC_007779	3876439	3878058
UN	3427	.	NC_007779	3958123	3958156
UN	3428	.	NC_007779	3973174	3973377
UN	3429	.	NC_007779	3973631	3973917
UN	3430	.	NC_007779	3974108	3974114
UN	3431	.	NC_007779	3987275	3988288
UN	3432	.	NC_007779	4015536	4015587
UN	3433	.	NC_007779	4017854	4017897
UN	3434	.	NC_007779	4018215	4019232
UN	3435	.	NC_007779	4019427	4019427
UN	3436	.	NC_007779	4019429	4021049
UN	3437	.	NC_007779	4056312	4056890
UN	3438	.	NC_007779	4169475	4169587
UN	3439	.	NC_007779	4169778	4170155
UN	3440	.	NC_007779	4211520	4211763
UN	3441	.	NC_007779	4211960	4213506
UN	3442	.	NC_007779	4213667	4215790
UN	3443	.	NC_007779	4215987	4216658
UN	3444	.	NC_007779	4299521	4299551
UN	3445	.	NC_007779	4299749	4299779
UN	3446	.	NC_007779	4310363	4311561
UN	3447	.	NC_007779	4502953	4504095
UN	3448	.	NC_007779	4512231	4513265