breseq  version 0.25c  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 12,627 A→G 2.4% K155K (AAA→AAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 12,630 C→A 2.5% D156E (GAC→GAA)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 12,638 G→A 2.4% R159H (CGT→CAT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 12,639 T→G 2.4% R159R (CGT→CGG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 12,642 C→T 2.4% I160I (ATC→ATT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 12,654 A→C 1.9% E164D (GAA→GAC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 12,657 A→C 1.9% V165V (GTA→GTC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 12,658 A→C 1.9% K166Q (AAA→CAA)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 12,659 A→T 1.9% K166I (AAA→ATA)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 12,663 T→C 1.8% R167R (CGT→CGC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 12,693 G→C 1.7% L177L (CTG→CTC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,269 A→G 8.9% E369E (GAA→GAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,271 C→T 9.0% A370V (GCT→GTT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,275 A→C 11.3% V371V (GTA→GTC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,279 A→G 11.2% I373V (ATC→GTC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,281 C→T 11.2% I373I (ATC→ATT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,291 G→C 16.8% V377L (GTT→CTT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,293 T→G 16.7% V377V (GTT→GTG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,298 G→C 16.3% G379A (GGT→GCT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,302 T→C 17.2% G380G (GGT→GGC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,309 A→C 16.0% T383P (ACT→CCT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,310 C→G 16.1% T383S (ACT→AGT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,311 T→C 16.0% T383T (ACT→ACC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,317 C→G 17.7% D385E (GAC→GAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,320 A→C 17.6% V386V (GTA→GTC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,323 A→G 17.9% K387K (AAA→AAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,329 A→G 21.2% V389V (GTA→GTG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,338 G→C 23.2% L392L (CTG→CTC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,356 T→G 23.1% S398S (TCT→TCG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,365 C→T 18.9% I401I (ATC→ATT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,368 A→G 18.4% E402E (GAA→GAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,373 T→A 16.7% M404K (ATG→AAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,383 G→C 13.4% V407V (GTG→GTC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,389 G→C 13.2% T409T (ACG→ACC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,391 C→A 13.2% T410K (ACG→AAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,400 C→A 13.1% A413E (GCG→GAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,402 A→C 13.3% K414Q (AAA→CAA)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,403 A→G 13.3% K414R (AAA→AGA)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,404 A→C 13.3% K414N (AAA→AAC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 66,457 C→A 100% V32F (GTT→TTT)  araD ← L‑ribulose‑5‑phosphate 4‑epimerase
RA 80,397 T→C 3.4% Q156Q (CAA→CAG)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,403 T→A 3.4% A154A (GCA→GCT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,409 T→A 8.8% V152V (GTA→GTT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,415 T→C 12.0% E150E (GAA→GAG)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,430 G→A 13.1% G145G (GGC→GGT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,447 G→T 13.3% L140M (CTG→ATG)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,448 T→C 13.3% A139A (GCA→GCG)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,454 A→G 13.1% F137F (TTT→TTC)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,457 C→A 14.0% A136A (GCG→GCT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,460 G→A 14.1% G135G (GGC→GGT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,466 G→C 14.8% T133T (ACC→ACG)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,469 G→T 14.9% A132A (GCC→GCA)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,472 G→A 14.1% T131T (ACC→ACT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,475 A→G 13.9% H130H (CAT→CAC)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,484 G→A 12.5% G127G (GGC→GGT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,487 G→A 12.4% C126C (TGC→TGT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,495 T→C 8.6% I124V (ATT→GTT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,499 C→G 4.8% M122I (ATG→ATC)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,500 A→G 4.9% M122T (ATG→ACG)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,502 C→G 4.9% G121G (GGG→GGC)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 97,880 C→T 100% S265F (TCC→TTC)  murD → UDP‑N‑acetylmuramoyl‑L‑alanine:D‑glutamate ligase
RA 109,382 A→G 6.3% E368E (GAA→GAG)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,388 A→G 6.4% Q370Q (CAA→CAG)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,397 T→A 6.5% A373A (GCT→GCA)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,398 T→A 6.6% S374T (TCG→ACG)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,400 G→C 6.7% S374S (TCG→TCC)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,401 A→G 6.7% I375V (ATC→GTC)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,403 C→T 7.3% I375I (ATC→ATT)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,406 C→G 6.7% T376T (ACC→ACG)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,407 T→C 6.7% F377L (TTC→CTC)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,424 T→C 6.7% R382R (CGT→CGC)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,427 G→C 6.8% L383L (CTG→CTC)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,430 T→C 6.6% Y384Y (TAT→TAC)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,433 A→C 5.9% E385D (GAA→GAC)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,436 A→G 6.0% K386K (AAA→AAG)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,440 G→T 5.6% A388S (GCG→TCG)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,442 G→C 5.8% A388A (GCG→GCC)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,445 G→T 5.8% G389G (GGG→GGT)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,457 T→G 5.2% T393T (ACT→ACG)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 109,463 T→G 4.7% D395E (GAT→GAG)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 167,632 C→A 100% P50Q (CCG→CAG)  fhuA → ferrichrome outer membrane transporter
RA 190,413 T→C 7.6% G180G (GGT→GGC)  rpsB → 30S ribosomal protein S2
RA 190,423 T→G 7.7% F184V (TTT→GTT)  rpsB → 30S ribosomal protein S2
RA 190,428 T→C 7.7% A185A (GCT→GCC)  rpsB → 30S ribosomal protein S2
RA 190,432 G→C 7.6% V187L (GTT→CTT)  rpsB → 30S ribosomal protein S2
RA 190,434 T→G 7.7% V187V (GTT→GTG)  rpsB → 30S ribosomal protein S2
RA 190,437 T→C 7.5% D188D (GAT→GAC)  rpsB → 30S ribosomal protein S2
RA 190,445 C→G 7.9% S191C (TCT→TGT)  rpsB → 30S ribosomal protein S2
RA 190,446 T→C 7.9% S191S (TCT→TCC)  rpsB → 30S ribosomal protein S2
RA 190,449 T→C 7.7% D192D (GAT→GAC)  rpsB → 30S ribosomal protein S2
RA 190,455 C→T 7.5% D194D (GAC→GAT)  rpsB → 30S ribosomal protein S2
RA 190,457 G→A 7.7% G195D (GGT→GAT)  rpsB → 30S ribosomal protein S2
RA 190,458 T→C 7.6% G195G (GGT→GGC)  rpsB → 30S ribosomal protein S2
RA 190,464 C→T 7.3% D197D (GAC→GAT)  rpsB → 30S ribosomal protein S2
RA 190,468 G→C 7.4% V199L (GTT→CTT)  rpsB → 30S ribosomal protein S2
RA 190,469 T→C 7.4% V199A (GTT→GCT)  rpsB → 30S ribosomal protein S2
RA 190,470 T→G 7.5% V199V (GTT→GTG)  rpsB → 30S ribosomal protein S2
RA 190,479 T→C 7.6% G202G (GGT→GGC)  rpsB → 30S ribosomal protein S2
RA 190,497 T→C 7.3% R208R (CGT→CGC)  rpsB → 30S ribosomal protein S2
RA 224,686 T→G 42.3% noncoding (916/1542 nt) rrsH → 16S ribosomal RNA
RA 224,713 T→C 20.1% noncoding (943/1542 nt) rrsH → 16S ribosomal RNA
RA 224,725 T→A 17.5% noncoding (955/1542 nt) rrsH → 16S ribosomal RNA
RA 224,759 T→G 11.7% noncoding (989/1542 nt) rrsH → 16S ribosomal RNA
RA 224,768 C→A 10.7% noncoding (998/1542 nt) rrsH → 16S ribosomal RNA
RA 224,769 C→T 10.7% noncoding (999/1542 nt) rrsH → 16S ribosomal RNA
RA 224,892 T→A 40.6% noncoding (1122/1542 nt) rrsH → 16S ribosomal RNA
RA 224,902 +A 36.9% noncoding (1132/1542 nt) rrsH → 16S ribosomal RNA
RA 224,903 G→C 38.7% noncoding (1133/1542 nt) rrsH → 16S ribosomal RNA
RA 224,906 C→T 43.5% noncoding (1136/1542 nt) rrsH → 16S ribosomal RNA
RA 224,907 C→G 43.5% noncoding (1137/1542 nt) rrsH → 16S ribosomal RNA
RA 224,908 G→T 43.3% noncoding (1138/1542 nt) rrsH → 16S ribosomal RNA
RA 224,910 C→G 43.6% noncoding (1140/1542 nt) rrsH → 16S ribosomal RNA
RA 224,911 C→T 43.8% noncoding (1141/1542 nt) rrsH → 16S ribosomal RNA
RA 224,915 A→G 43.6% noncoding (1145/1542 nt) rrsH → 16S ribosomal RNA
RA 224,920 A→G 46.5% noncoding (1150/1542 nt) rrsH → 16S ribosomal RNA
RA 224,921 A→T 46.2% noncoding (1151/1542 nt) rrsH → 16S ribosomal RNA
RA 224,923 G→A 46.9% noncoding (1153/1542 nt) rrsH → 16S ribosomal RNA
RA 224,933 A→G 44.3% noncoding (1163/1542 nt) rrsH → 16S ribosomal RNA
RA 224,935 T→G 100% noncoding (1165/1542 nt) rrsH → 16S ribosomal RNA
RA 224,937 A→T 43.5% noncoding (1167/1542 nt) rrsH → 16S ribosomal RNA
RA 224,968 G→A 53.6% noncoding (1198/1542 nt) rrsH → 16S ribosomal RNA
RA 274,547 A→G 100% intergenic (‑206/‑2) insH ← / → mmuP IS5 transposase and trans‑activator/S‑methylmethionine transporter
MC JC 274,733 Δ97,240 bp 100% [mmuP]–[mhpD] 90 genes
RA 457,324 A→G 4.8% Q225Q (CAA→CAG)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,333 T→C 4.9% R228R (CGT→CGC)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,336 A→G 4.9% K229K (AAA→AAG)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,338 A→T 4.9% H230L (CAT→CTT)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,339 T→G 5.3% H230Q (CAT→CAG)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,343 C→A 5.2% Q232K (CAG→AAG)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,345 G→C 5.2% Q232H (CAG→CAC)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,351 A→G 5.0% E234E (GAA→GAG)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,355 T→A 5.1% L236M (TTG→ATG)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,357 G→T 5.1% L236F (TTG→TTT)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,361 G→T 5.1% V238F (GTT→TTT)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,363 T→C 5.1% V238V (GTT→GTC)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,366 T→C 5.0% D239D (GAT→GAC)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,372 T→C 5.3% S241S (TCT→TCC)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,375 G→T 5.1% K242N (AAG→AAT)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,376 A→G 5.1% I243V (ATC→GTC)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,384 T→C 5.7% F245F (TTT→TTC)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,387 T→C 5.6% I246I (ATT→ATC)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,388 T→G 5.8% C247G (TGT→GGT)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 457,392 G→C 5.6% G248A (GGC→GCC)  clpX → ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease
RA 547,694 A→G 100% intergenic (+123/‑1156) fdrA → / → ylbF acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain/hypothetical protein
RA 547,831 +G 100% intergenic (+260/‑1019) fdrA → / → ylbF acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain/hypothetical protein
RA 556,858 A→T 100% L36Q (CTG→CAG)  folD ← bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/5,10‑methylene‑tetrahydrofolate cyclohydrolase
RA 569,996 G→C 100% intergenic (+345/‑120) ybcK → / → ybcL recombinase/kinase inhibitor
MC JC 654,214 Δ1,199 bp 100% insH insH
RA 725,818 A→G 10.3% N547N (AAT→AAC)  kdpB ← potassium translocating ATPase, subunit B
RA 725,822 C→G 10.8% G546A (GGC→GCC)  kdpB ← potassium translocating ATPase, subunit B
RA 725,827 C→T 13.2% E544E (GAG→GAA)  kdpB ← potassium translocating ATPase, subunit B
RA 725,830 T→C 12.9% K543K (AAA→AAG)  kdpB ← potassium translocating ATPase, subunit B
RA 725,840 T→G 14.7% Q540P (CAG→CCG)  kdpB ← potassium translocating ATPase, subunit B
RA 725,920 T→G 12.7% V513V (GTA→GTC)  kdpB ← potassium translocating ATPase, subunit B
RA 726,501 A→C 6.5% S320A (TCG→GCG)  kdpB ← potassium translocating ATPase, subunit B
RA 726,502 C→A 6.5% A319A (GCG→GCT)  kdpB ← potassium translocating ATPase, subunit B
RA 726,519 G→A 6.8% L314F (CTC→TTC)  kdpB ← potassium translocating ATPase, subunit B
RA 726,535 T→C 6.8% K308K (AAA→AAG)  kdpB ← potassium translocating ATPase, subunit B
RA 726,538 A→G 7.1% D307D (GAT→GAC)  kdpB ← potassium translocating ATPase, subunit B
RA 726,541 C→T 6.7% L306L (CTG→CTA)  kdpB ← potassium translocating ATPase, subunit B
RA 726,544 T→C 6.7% L305L (CTA→CTG)  kdpB ← potassium translocating ATPase, subunit B
RA 726,550 A→C 7.7% V303V (GTT→GTG)  kdpB ← potassium translocating ATPase, subunit B
RA 726,551 A→G 7.8% V303A (GTT→GCT)  kdpB ← potassium translocating ATPase, subunit B
RA 726,552 C→T 7.8% V303I (GTT→ATT)  kdpB ← potassium translocating ATPase, subunit B
RA 726,554 T→G 8.2% D302A (GAC→GCC)  kdpB ← potassium translocating ATPase, subunit B
RA 726,556 A→G 7.9% V301V (GTT→GTC)  kdpB ← potassium translocating ATPase, subunit B
RA 726,565 T→A 7.0% A298A (GCA→GCT)  kdpB ← potassium translocating ATPase, subunit B
RA 726,568 C→G 7.0% A297A (GCG→GCC)  kdpB ← potassium translocating ATPase, subunit B
RA 726,571 T→C 7.0% E296E (GAA→GAG)  kdpB ← potassium translocating ATPase, subunit B
RA 726,577 T→C 6.9% A294A (GCA→GCG)  kdpB ← potassium translocating ATPase, subunit B
RA 726,583 T→G 6.6% G292G (GGA→GGC)  kdpB ← potassium translocating ATPase, subunit B
RA 749,354 C→A 100% P17P (CCG→CCT)  ybgO ← fimbrial‑like adhesin protein
RA 758,440 C→A 100% F110L (TTC→TTA)  sdhB → succinate dehydrogenase, FeS subunit
RA 815,429 G→C 3.4% L494L (CTG→CTC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,437 T→A 6.7% F497Y (TTC→TAC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,450 A→C 14.1% V501V (GTA→GTC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,453 G→T 14.9% G502G (GGG→GGT)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,456 C→T 14.1% I503I (ATC→ATT)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,460 T→C 14.4% L505L (TTA→CTA)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,462 A→G 14.3% L505L (TTA→TTG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,471 A→G 19.2% E508E (GAA→GAG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,474 T→C 19.1% G509G (GGT→GGC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,477 G→C 18.7% L510L (CTG→CTC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,480 T→C 18.5% D511D (GAT→GAC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,486 G→C 21.0% P513P (CCG→CCC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,489 A→G 20.6% E514E (GAA→GAG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,504 G→A 26.6% A519A (GCG→GCA)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,522 A→G 25.2% K525K (AAA→AAG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,525 A→G 25.0% E526E (GAA→GAG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,528 C→G 24.4% G527G (GGC→GGG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,532 C→T 22.8% L529L (CTG→TTG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,540 C→G 19.8% S531S (TCC→TCG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,543 A→G 18.1% E532E (GAA→GAG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,555 C→T 16.1% I536I (ATC→ATT)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,561 C→G 15.2% T538T (ACC→ACG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,573 G→C 12.4% A542A (GCG→GCC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,576 A→G 11.6% A543A (GCA→GCG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,579 T→A 10.2% R544R (CGT→CGA)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 846,315 T→C 5.2% I191V (ATC→GTC)  glnQ ← glutamine transporter subunit
RA 846,316 C→G 4.7% V190V (GTG→GTC)  glnQ ← glutamine transporter subunit
RA 846,322 C→G 6.5% T188T (ACG→ACC)  glnQ ← glutamine transporter subunit
RA 846,328 C→A 6.4% G186G (GGG→GGT)  glnQ ← glutamine transporter subunit
RA 846,331 T→C 6.5% E185E (GAA→GAG)  glnQ ← glutamine transporter subunit
RA 846,334 T→A 6.5% E184D (GAA→GAT)  glnQ ← glutamine transporter subunit
RA 846,337 A→G 6.0% A183A (GCT→GCC)  glnQ ← glutamine transporter subunit
RA 846,344 T→C 6.2% D181G (GAT→GGT)  glnQ ← glutamine transporter subunit
RA 846,346 C→A 6.2% Q180H (CAG→CAT)  glnQ ← glutamine transporter subunit
RA 846,352 A→G 6.4% V178V (GTT→GTC)  glnQ ← glutamine transporter subunit
RA 846,355 C→G 6.4% K177N (AAG→AAC)  glnQ ← glutamine transporter subunit
RA 846,358 C→G 6.8% L176L (CTG→CTC)  glnQ ← glutamine transporter subunit
RA 846,361 C→A 6.3% V175V (GTG→GTT)  glnQ ← glutamine transporter subunit
RA 846,364 T→C 6.4% E174E (GAA→GAG)  glnQ ← glutamine transporter subunit
RA 846,368 T→C 6.3% H173R (CAT→CGT)  glnQ ← glutamine transporter subunit
RA 846,369 G→C 3.5% H173D (CAT→GAT)  glnQ ← glutamine transporter subunit
RA 846,371 C→A 3.5% R172L (CGC→CTC)  glnQ ← glutamine transporter subunit
RA 846,373 C→G 3.7% L171L (CTG→CTC)  glnQ ← glutamine transporter subunit
RA 846,376 T→C 6.5% E170E (GAA→GAG)  glnQ ← glutamine transporter subunit
RA 846,400 T→C 14.8% E162E (GAA→GAG)  glnQ ← glutamine transporter subunit
RA 846,406 A→G 11.7% F160F (TTT→TTC)  glnQ ← glutamine transporter subunit
RA 846,409 C→G 11.2% L159L (CTG→CTC)  glnQ ← glutamine transporter subunit
RA 846,415 C→T 9.6% M157I (ATG→ATA)  glnQ ← glutamine transporter subunit
RA 846,417 T→G 10.0% M157L (ATG→CTG)  glnQ ← glutamine transporter subunit
RA 846,418 T→C 9.7% K156K (AAA→AAG)  glnQ ← glutamine transporter subunit
RA 846,424 C→T 9.7% K154K (AAG→AAA)  glnQ ← glutamine transporter subunit
RA 846,426 T→C 9.8% K154E (AAG→GAG)  glnQ ← glutamine transporter subunit
RA 846,429 C→T 9.7% V153M (GTG→ATG)  glnQ ← glutamine transporter subunit
RA 846,430 C→G 9.7% A152A (GCG→GCC)  glnQ ← glutamine transporter subunit
RA 846,436 C→T 10.1% A150A (GCG→GCA)  glnQ ← glutamine transporter subunit
RA 846,439 G→A 10.0% R149R (CGC→CGT)  glnQ ← glutamine transporter subunit
RA 846,442 G→A 9.2% A148A (GCC→GCT)  glnQ ← glutamine transporter subunit
RA 846,448 C→G 9.1% A146A (GCG→GCC)  glnQ ← glutamine transporter subunit
RA 846,451 C→A 9.2% V145V (GTG→GTT)  glnQ ← glutamine transporter subunit
RA 846,454 A→T 9.1% R144R (CGT→CGA)  glnQ ← glutamine transporter subunit
RA 846,463 T→C 9.0% Q141Q (CAA→CAG)  glnQ ← glutamine transporter subunit
RA 846,466 A→G 5.5% G140G (GGT→GGC)  glnQ ← glutamine transporter subunit
RA 846,469 A→G 5.7% G139G (GGT→GGC)  glnQ ← glutamine transporter subunit
RA 846,472 A→C 5.2% S138S (TCT→TCG)  glnQ ← glutamine transporter subunit
RA 846,475 A→G 3.6% L137L (CTT→CTC)  glnQ ← glutamine transporter subunit
RA 887,234 C→A 100% A176A (GCG→GCT)  ybjJ ← transporter
RA 987,574 G→T 100% intergenic (‑170/+433) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 1,093,686 T→C 100% V130A (GTA→GCA)  ycdT → diguanylate cyclase
RA 1,097,580 C→T 22.6% intergenic (+329/+226) ycdU → / ← serX inner membrane protein/tRNA‑Ser
RA 1,170,573 C→T 100% intergenic (‑164/‑77) ycfQ ← / → ycfR DNA‑binding transcriptional regulator/hypothetical protein
RA 1,213,001 T→C 3.6% intergenic (+245/+256) mcrA → / ← elbA 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein
RA 1,213,013 T→C 3.1% intergenic (+257/+244) mcrA → / ← elbA 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein
RA 1,282,104 T→G 2.9% C222G (TGC→GGC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,105 G→C 2.8% C222S (TGC→TCC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,110 T→C 2.8% L224L (TTG→CTG)  narG → nitrate reductase 1 subunit alpha
RA 1,282,115 T→A 3.0% P225P (CCT→CCA)  narG → nitrate reductase 1 subunit alpha
RA 1,282,118 T→G 3.0% P226P (CCT→CCG)  narG → nitrate reductase 1 subunit alpha
RA 1,282,121 G→A 2.8% A227A (GCG→GCA)  narG → nitrate reductase 1 subunit alpha
RA 1,282,124 T→A 2.9% S228S (TCT→TCA)  narG → nitrate reductase 1 subunit alpha
RA 1,282,127 G→A 2.8% P229P (CCG→CCA)  narG → nitrate reductase 1 subunit alpha
RA 1,282,130 A→G 2.9% Q230Q (CAA→CAG)  narG → nitrate reductase 1 subunit alpha
RA 1,282,135 G→T 2.8% W232L (TGG→TTG)  narG → nitrate reductase 1 subunit alpha
RA 1,282,136 G→C 2.8% W232C (TGG→TGC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,142 G→C 2.6% E234D (GAG→GAC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,145 A→G 2.6% Q235Q (CAA→CAG)  narG → nitrate reductase 1 subunit alpha
RA 1,282,148 T→C 2.5% T236T (ACT→ACC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,154 A→T 2.6% V238V (GTA→GTT)  narG → nitrate reductase 1 subunit alpha
RA 1,282,157 G→A 2.8% P239P (CCG→CCA)  narG → nitrate reductase 1 subunit alpha
RA 1,282,160 A→G 2.4% E240E (GAA→GAG)  narG → nitrate reductase 1 subunit alpha
RA 1,282,163 T→C 2.6% S241S (TCT→TCC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,165 C→G 2.6% A242G (GCT→GGT)  narG → nitrate reductase 1 subunit alpha
RA 1,282,174 A→T 2.4% Y245F (TAC→TTC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,178 C→T 2.3% N246N (AAC→AAT)  narG → nitrate reductase 1 subunit alpha
MC JC 1,301,041 Δ1,336 bp 100% insC–insD insC, insD
RA 1,318,876 G→A 100% P21S (CCT→TCT)  trpA ← tryptophan synthase subunit alpha
MC JC 1,413,639 Δ23,060 bp 100% [ydaO]–ynaE 30 genes
RA 1,483,588 G→A 100% L322L (CTG→CTA)  ynbD → phosphatase, inner membrane protein
RA 1,485,314 G→C 15.4% A161A (GCG→GCC)  hrpA → ATP‑dependent helicase
RA 1,485,320 C→T 15.3% I163I (ATC→ATT)  hrpA → ATP‑dependent helicase
RA 1,485,321 C→G 15.3% Q164E (CAG→GAG)  hrpA → ATP‑dependent helicase
RA 1,485,322 A→G 15.2% Q164R (CAG→CGG)  hrpA → ATP‑dependent helicase
RA 1,485,323 G→C 15.2% Q164H (CAG→CAC)  hrpA → ATP‑dependent helicase
RA 1,485,325 A→G 15.4% Q165R (CAA→CGA)  hrpA → ATP‑dependent helicase
RA 1,485,326 A→C 15.3% Q165H (CAA→CAC)  hrpA → ATP‑dependent helicase
RA 1,485,332 C→A 15.2% R167R (CGC→CGA)  hrpA → ATP‑dependent helicase
RA 1,485,336 C→T 15.5% L169L (CTG→TTG)  hrpA → ATP‑dependent helicase
RA 1,485,339 A→C 12.5% M170L (ATG→CTG)  hrpA → ATP‑dependent helicase
RA 1,485,340 T→G 11.0% M170R (ATG→AGG)  hrpA → ATP‑dependent helicase
RA 1,485,341 G→T 11.0% M170I (ATG→ATT)  hrpA → ATP‑dependent helicase
RA 1,485,342 C→G 11.5% Q171E (CAG→GAG)  hrpA → ATP‑dependent helicase
RA 1,485,353 T→C 17.0% T174T (ACT→ACC)  hrpA → ATP‑dependent helicase
RA 1,485,359 T→C 17.8% I176I (ATT→ATC)  hrpA → ATP‑dependent helicase
RA 1,485,365 C→T 17.3% D178D (GAC→GAT)  hrpA → ATP‑dependent helicase
RA 1,485,386 G→C 13.9% L185L (CTG→CTC)  hrpA → ATP‑dependent helicase
RA 1,485,389 T→C 11.8% N186N (AAT→AAC)  hrpA → ATP‑dependent helicase
RA 1,485,395 T→C 8.6% D188D (GAT→GAC)  hrpA → ATP‑dependent helicase
RA 1,485,398 T→C 8.6% F189F (TTT→TTC)  hrpA → ATP‑dependent helicase
RA 1,485,399 T→C 8.6% L190L (TTG→CTG)  hrpA → ATP‑dependent helicase
RA 1,485,404 C→G 8.3% L191L (CTC→CTG)  hrpA → ATP‑dependent helicase
RA 1,485,407 C→A 8.2% G192G (GGC→GGA)  hrpA → ATP‑dependent helicase
RA 1,485,413 G→A 7.7% L194L (TTG→TTA)  hrpA → ATP‑dependent helicase
RA 1,485,416 A→G 8.1% K195K (AAA→AAG)  hrpA → ATP‑dependent helicase
RA 1,485,417 G→C 8.0% E196Q (GAG→CAG)  hrpA → ATP‑dependent helicase
RA 1,485,419 G→T 8.0% E196D (GAG→GAT)  hrpA → ATP‑dependent helicase
RA 1,485,420 T→A 8.0% L197M (TTG→ATG)  hrpA → ATP‑dependent helicase
RA 1,485,422 G→T 8.7% L197F (TTG→TTT)  hrpA → ATP‑dependent helicase
RA 1,485,430 G→A 7.7% R200Q (CGG→CAG)  hrpA → ATP‑dependent helicase
RA 1,485,434 T→C 7.7% R201R (CGT→CGC)  hrpA → ATP‑dependent helicase
RA 1,485,437 T→A 6.6% P202P (CCT→CCA)  hrpA → ATP‑dependent helicase
RA 1,485,440 C→T 6.3% D203D (GAC→GAT)  hrpA → ATP‑dependent helicase
RA 1,485,443 A→G 6.2% L204L (CTA→CTG)  hrpA → ATP‑dependent helicase
RA 1,485,446 A→G 6.2% K205K (AAA→AAG)  hrpA → ATP‑dependent helicase
RA 1,485,461 C→G 2.6% S210S (TCC→TCG)  hrpA → ATP‑dependent helicase
RA 1,485,797 A→G 5.6% G322G (GGA→GGG)  hrpA → ATP‑dependent helicase
RA 1,485,800 G→C 5.8% R323R (CGG→CGC)  hrpA → ATP‑dependent helicase
RA 1,485,821 C→T 5.6% N330N (AAC→AAT)  hrpA → ATP‑dependent helicase
RA 1,485,822 G→A 5.6% V331I (GTC→ATC)  hrpA → ATP‑dependent helicase
RA 1,485,830 A→G 5.7% E333E (GAA→GAG)  hrpA → ATP‑dependent helicase
RA 1,485,842 C→G 6.0% T337T (ACC→ACG)  hrpA → ATP‑dependent helicase
RA 1,485,845 A→G 5.7% V338V (GTA→GTG)  hrpA → ATP‑dependent helicase
RA 1,485,851 G→T 5.4% G340G (GGG→GGT)  hrpA → ATP‑dependent helicase
RA 1,485,855 A→G 5.9% K342E (AAA→GAA)  hrpA → ATP‑dependent helicase
RA 1,485,857 A→G 5.9% K342K (AAA→AAG)  hrpA → ATP‑dependent helicase
RA 1,485,863 T→C 5.9% V344V (GTT→GTC)  hrpA → ATP‑dependent helicase
RA 1,485,864 A→G 5.9% I345V (ATC→GTC)  hrpA → ATP‑dependent helicase
RA 1,485,869 C→T 6.2% D346D (GAC→GAT)  hrpA → ATP‑dependent helicase
RA 1,485,870 C→A 6.2% P347T (CCC→ACC)  hrpA → ATP‑dependent helicase
RA 1,485,872 C→T 6.2% P347P (CCC→CCT)  hrpA → ATP‑dependent helicase
RA 1,485,878 A→C 5.6% T349T (ACA→ACC)  hrpA → ATP‑dependent helicase
RA 1,485,881 G→A 4.9% A350A (GCG→GCA)  hrpA → ATP‑dependent helicase
RA 1,485,884 T→C 4.7% R351R (CGT→CGC)  hrpA → ATP‑dependent helicase
RA 1,486,010 T→C 2.6% Y393Y (TAT→TAC)  hrpA → ATP‑dependent helicase
RA 1,486,011 T→A 2.5% S394T (TCC→ACC)  hrpA → ATP‑dependent helicase
RA 1,486,012 C→G 2.6% S394C (TCC→TGC)  hrpA → ATP‑dependent helicase
RA 1,486,016 A→G 3.4% E395E (GAA→GAG)  hrpA → ATP‑dependent helicase
RA 1,486,019 C→G 3.5% D396E (GAC→GAG)  hrpA → ATP‑dependent helicase
RA 1,486,022 T→A 3.5% D397E (GAT→GAA)  hrpA → ATP‑dependent helicase
RA 1,486,025 C→T 3.5% F398F (TTC→TTT)  hrpA → ATP‑dependent helicase
RA 1,486,031 G→T 3.6% S400S (TCG→TCT)  hrpA → ATP‑dependent helicase
RA 1,486,037 G→C 3.4% P402P (CCG→CCC)  hrpA → ATP‑dependent helicase
RA 1,486,046 C→G 4.9% T405T (ACC→ACG)  hrpA → ATP‑dependent helicase
RA 1,486,064 T→C 5.2% R411R (CGT→CGC)  hrpA → ATP‑dependent helicase
RA 1,486,070 C→T 5.0% N413N (AAC→AAT)  hrpA → ATP‑dependent helicase
RA 1,486,073 G→C 5.0% L414L (CTG→CTC)  hrpA → ATP‑dependent helicase
RA 1,486,076 C→T 5.0% A415A (GCC→GCT)  hrpA → ATP‑dependent helicase
RA 1,486,083 A→G 5.0% I418V (ATT→GTT)  hrpA → ATP‑dependent helicase
RA 1,486,085 T→A 5.3% I418I (ATT→ATA)  hrpA → ATP‑dependent helicase
RA 1,486,086 T→C 5.2% L419L (TTG→CTG)  hrpA → ATP‑dependent helicase
RA 1,496,775 Δ1 bp 100% coding (11/924 nt) ydcI ← DNA‑binding transcriptional regulator
RA 1,539,958 C→T 14.0% E204K (GAA→AAA)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,968 G→C 10.5% I200M (ATC→ATG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,971 A→C 10.0% A199A (GCT→GCG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,978 C→G 6.8% S197T (AGC→ACC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,979 T→A 6.4% S197C (AGC→TGC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,988 T→A 6.6% T194S (ACC→TCC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,989 C→A 6.5% A193A (GCG→GCT)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,991 C→A 6.5% A193S (GCG→TCG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,995 G→A 6.5% C191C (TGC→TGT)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,999 C→G 6.5% S190T (AGC→ACC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,001 G→C 6.5% P189P (CCC→CCG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,004 A→G 6.3% N188N (AAT→AAC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,007 G→C 6.3% L187L (CTC→CTG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,009 G→A 6.3% L187F (CTC→TTC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,016 T→C 6.6% E184E (GAA→GAG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,019 G→A 6.0% C183C (TGC→TGT)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,022 C→G 5.6% L182L (CTG→CTC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,024 G→T 5.6% L182M (CTG→ATG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,028 C→A 5.8% P180P (CCG→CCT)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,615,814 C→A 100% D202Y (GAC→TAC)  yneI ← aldehyde dehydrogenase
RA 1,669,599 Δ1 bp 100% coding (680/1221 nt) dgsA ← DNA‑binding transcriptional repressor
RA 1,677,346 C→G 1.9% V243V (GTG→GTC)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,349 A→G 2.4% I242I (ATT→ATC)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,352 C→G 2.3% L241L (CTG→CTC)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,359 T→G 2.2% D239A (GAC→GCC)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,360 C→G 2.2% D239H (GAC→CAC)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,366 T→C 2.1% S237G (AGC→GGC)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,367 G→A 2.0% L236L (CTC→CTT)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,373 A→G 2.5% F234F (TTT→TTC)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,379 C→G 2.6% A232A (GCG→GCC)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,381 C→T 2.7% A232T (GCG→ACG)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,382 A→G 2.7% A231A (GCT→GCC)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,383 G→A 2.7% A231V (GCT→GTT)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,384 C→A 2.7% A231S (GCT→TCT)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,385 C→A 2.7% A230A (GCG→GCT)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,391 C→G 2.7% A228A (GCG→GCC)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,397 G→A 4.4% G226G (GGC→GGT)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,414 G→T 4.6% L221M (CTG→ATG)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,415 C→G 5.5% M220I (ATG→ATC)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,677,418 C→G 4.6% S219S (TCG→TCC)  pntB ← pyridine nucleotide transhydrogenase subunit beta
RA 1,816,162 T→C 2.4% G194G (GGT→GGC)  katE → hydroperoxidase HPII(III)
RA 1,844,073 G→A 100% intergenic (‑224/‑12) ynjH ← / → gdhA hypothetical protein/glutamate dehydrogenase, NADP‑specific
RA 1,864,922 C→G 4.1% S146S (TCC→TCG)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,931 C→T 7.3% S149S (TCC→TCT)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,956 C→A 7.4% L158M (CTG→ATG)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,968 A→C 7.7% I162L (ATC→CTC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,970 C→G 7.7% I162M (ATC→ATG)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,971 A→G 7.9% N163D (AAC→GAC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,976 T→C 7.6% D164D (GAT→GAC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,979 C→G 7.6% N165K (AAC→AAG)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,988 +G 7.9% coding (504/996 nt) gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,990 T→G 8.2% I169S (ATC→AGC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,993 Δ1 bp 7.8% coding (509/996 nt) gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,994 A→C 7.8% E170D (GAA→GAC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,865,000 G→C 8.2% L172L (CTG→CTC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,865,010 G→A 6.7% V176I (GTT→ATT)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,865,012 T→C 6.8% V176V (GTT→GTC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,918,872 T→A 100% S301T (TCC→ACC)  yebS → inner membrane protein
RA 1,973,476 G→A 100% L310L (CTC→CTT)  tar ← methyl‑accepting chemotaxis protein II
RA 2,005,401 C→T 100% E115K (GAA→AAA)  fliC ← flagellar filament structural protein
RA 2,170,094 C→A 100% intergenic (‑437/+32) ogrK ← / ← yegR DNA‑binding transcriptional regulator/hypothetical protein
RA 2,251,498 C→A 6.7% W123C (TGG→TGT)  lysP ← lysine transporter
RA 2,251,499 C→T 6.7% W123* (TGG→TAG)  lysP ← lysine transporter
RA 2,251,503 T→G 8.2% S122R (AGC→CGC)  lysP ← lysine transporter
RA 2,251,507 G→C 8.3% V120V (GTC→GTG)  lysP ← lysine transporter
RA 2,251,514 T→G 9.1% Q118P (CAG→CCG)  lysP ← lysine transporter
RA 2,251,515 G→C 9.0% Q118E (CAG→GAG)  lysP ← lysine transporter
RA 2,251,519 T→A 9.0% A116A (GCA→GCT)  lysP ← lysine transporter
RA 2,251,522 A→G 8.1% V115V (GTT→GTC)  lysP ← lysine transporter
RA 2,251,525 C→G 8.1% L114L (CTG→CTC)  lysP ← lysine transporter
RA 2,251,528 G→C 7.8% D113E (GAC→GAG)  lysP ← lysine transporter
RA 2,251,531 A→T 8.3% V112V (GTT→GTA)  lysP ← lysine transporter
RA 2,251,532 A→G 7.9% V112A (GTT→GCT)  lysP ← lysine transporter
RA 2,251,537 G→C 8.1% I110M (ATC→ATG)  lysP ← lysine transporter
RA 2,251,539 T→C 8.1% I110V (ATC→GTC)  lysP ← lysine transporter
RA 2,251,543 C→A 8.4% V108V (GTG→GTT)  lysP ← lysine transporter
RA 2,251,545 C→T 8.2% V108M (GTG→ATG)  lysP ← lysine transporter
RA 2,251,555 G→A 8.1% Y104Y (TAC→TAT)  lysP ← lysine transporter
RA 2,251,556 T→A 8.0% Y104F (TAC→TTC)  lysP ← lysine transporter
RA 2,251,575 G→T 9.3% L98M (CTG→ATG)  lysP ← lysine transporter
RA 2,251,579 G→A 8.4% F96F (TTC→TTT)  lysP ← lysine transporter
RA 2,251,585 A→G 4.9% F94F (TTT→TTC)  lysP ← lysine transporter
RA 2,262,756 A→C 51.6% intergenic (‑126/+297) yeiC ← / ← fruA kinase/fused fructose‑specific PTS enzyme IIB'BC components
MC JC 2,320,795 Δ1,336 bp 100% insD–insC insD, insC
RA 2,406,075 C→T 100% V51I (GTT→ATT)  nuoF ← NADH:ubiquinone oxidoreductase, chain F
RA 2,416,102 G→A 100% L233L (CTG→TTG)  yfbS ← transporter
RA 2,538,628 C→T 100% T258T (ACC→ACT)  cysK → cysteine synthase A, O‑acetylserine sulfhydrolase A subunit
RA 2,705,367 G→C 7.2% A138A (GCC→GCG)  lepA ← GTP binding membrane protein
RA 2,705,370 T→G 7.3% A137A (GCA→GCC)  lepA ← GTP binding membrane protein
RA 2,705,373 C→T 6.9% P136P (CCG→CCA)  lepA ← GTP binding membrane protein
RA 2,705,376 C→A 7.2% L135L (CTG→CTT)  lepA ← GTP binding membrane protein
RA 2,705,400 C→G 8.7% V127V (GTG→GTC)  lepA ← GTP binding membrane protein
RA 2,705,402 C→T 8.6% V127M (GTG→ATG)  lepA ← GTP binding membrane protein
RA 2,705,403 A→G 8.6% V126V (GTT→GTC)  lepA ← GTP binding membrane protein
RA 2,705,405 C→T 8.3% V126I (GTT→ATT)  lepA ← GTP binding membrane protein
RA 2,705,409 G→C 8.4% L124L (CTC→CTG)  lepA ← GTP binding membrane protein
RA 2,705,412 A→G 8.4% D123D (GAT→GAC)  lepA ← GTP binding membrane protein
RA 2,705,415 C→A 8.2% M122I (ATG→ATT)  lepA ← GTP binding membrane protein
RA 2,705,416 A→T 8.4% M122K (ATG→AAG)  lepA ← GTP binding membrane protein
RA 2,705,427 G→C 8.4% T118T (ACC→ACG)  lepA ← GTP binding membrane protein
RA 2,705,428 G→A 8.5% T118I (ACC→ATC)  lepA ← GTP binding membrane protein
RA 2,705,433 G→C 8.3% C116W (TGC→TGG)  lepA ← GTP binding membrane protein
RA 2,705,434 C→A 8.5% C116F (TGC→TTC)  lepA ← GTP binding membrane protein
RA 2,705,435 A→G 8.5% C116R (TGC→CGC)  lepA ← GTP binding membrane protein
RA 2,705,439 T→G 8.7% A114A (GCA→GCC)  lepA ← GTP binding membrane protein
RA 2,705,445 G→T 8.8% T112T (ACC→ACA)  lepA ← GTP binding membrane protein
RA 2,705,448 T→C 8.8% Q111Q (CAA→CAG)  lepA ← GTP binding membrane protein
RA 2,705,457 T→G 4.3% V108V (GTA→GTC)  lepA ← GTP binding membrane protein
RA 2,705,459 C→T 4.4% V108I (GTA→ATA)  lepA ← GTP binding membrane protein
RA 2,731,753 C→G 4.6% L359F (TTG→TTC)  clpB ← protein disaggregation chaperone
RA 2,731,755 A→C 4.5% L359V (TTG→GTG)  clpB ← protein disaggregation chaperone
RA 2,731,756 T→C 4.5% E358E (GAA→GAG)  clpB ← protein disaggregation chaperone
RA 2,731,762 A→G 11.8% R356R (CGT→CGC)  clpB ← protein disaggregation chaperone
RA 2,731,768 T→C 16.5% K354K (AAA→AAG)  clpB ← protein disaggregation chaperone
RA 2,731,786 C→G 18.2% A348A (GCG→GCC)  clpB ← protein disaggregation chaperone
RA 2,731,794 T→C 18.3% T346A (ACC→GCC)  clpB ← protein disaggregation chaperone
RA 2,731,795 A→G 18.3% D345D (GAT→GAC)  clpB ← protein disaggregation chaperone
RA 2,731,798 T→C 18.6% E344E (GAA→GAG)  clpB ← protein disaggregation chaperone
RA 2,731,804 A→G 18.0% S342S (TCT→TCC)  clpB ← protein disaggregation chaperone
RA 2,731,805 G→C 18.0% S342C (TCT→TGT)  clpB ← protein disaggregation chaperone
RA 2,731,806 A→T 18.5% S342T (TCT→ACT)  clpB ← protein disaggregation chaperone
RA 2,731,807 A→C 18.6% P341P (CCT→CCG)  clpB ← protein disaggregation chaperone
RA 2,731,813 G→A 19.1% A339A (GCC→GCT)  clpB ← protein disaggregation chaperone
RA 2,731,814 G→C 19.1% A339G (GCC→GGC)  clpB ← protein disaggregation chaperone
RA 2,731,816 A→G 20.6% V338V (GTT→GTC)  clpB ← protein disaggregation chaperone
RA 2,731,822 C→G 20.5% V336V (GTG→GTC)  clpB ← protein disaggregation chaperone
RA 2,731,825 T→C 19.6% K335K (AAA→AAG)  clpB ← protein disaggregation chaperone
RA 2,731,827 T→G 19.6% K335Q (AAA→CAA)  clpB ← protein disaggregation chaperone
RA 2,731,840 T→C 18.4% E330E (GAA→GAG)  clpB ← protein disaggregation chaperone
RA 2,731,855 T→C 9.1% K325K (AAA→AAG)  clpB ← protein disaggregation chaperone
RA 2,731,858 T→C 9.2% E324E (GAA→GAG)  clpB ← protein disaggregation chaperone
RA 2,731,861 A→G 5.7% I323I (ATT→ATC)  clpB ← protein disaggregation chaperone
RA 2,739,249 A→G 4.1% F186F (TTT→TTC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,252 A→G 3.9% G185G (GGT→GGC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,255 A→G 3.7% V184V (GTT→GTC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,257 C→T 3.6% V184I (GTT→ATT)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,258 C→G 3.6% P183P (CCG→CCC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,270 C→T 3.4% G179G (GGG→GGA)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,276 G→A 3.2% A177A (GCC→GCT)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,279 C→G 3.3% M176I (ATG→ATC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,281 T→G 3.2% M176L (ATG→CTG)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,282 T→C 3.5% E175E (GAA→GAG)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,284 C→G 3.1% E175Q (GAA→CAA)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,285 A→G 3.1% R174R (CGT→CGC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,292 G→A 3.2% T172I (ACT→ATT)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,293 T→C 3.3% T172A (ACT→GCT)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,294 T→C 3.3% Q171Q (CAA→CAG)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,300 T→C 3.3% E169E (GAA→GAG)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,306 T→G 3.3% T167T (ACA→ACC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,309 A→G 3.2% R166R (CGT→CGC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,312 A→C 3.1% A165A (GCT→GCG)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,801,044 C→G 8.6% A347A (GCC→GCG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,048 G→C 8.0% D349H (GAT→CAT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,050 T→G 8.2% D349E (GAT→GAG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,060 C→A 7.7% R353R (CGA→AGA)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,061 G→C 7.8% R353P (CGA→CCA)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,062 A→C 7.7% R353R (CGA→CGC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,063 C→A 7.6% L354M (CTG→ATG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,065 G→C 7.7% L354L (CTG→CTC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,068 A→T 7.9% A355A (GCA→GCT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,071 A→G 8.0% E356E (GAA→GAG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,074 C→T 7.9% I357I (ATC→ATT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,092 T→C 10.2% Y363Y (TAT→TAC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,095 C→G 10.0% P364P (CCC→CCG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,110 A→G 10.4% E369E (GAA→GAG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,119 A→T 10.5% V372V (GTA→GTT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,125 T→C 10.5% R374R (CGT→CGC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,128 T→G 9.7% A375A (GCT→GCG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,134 T→G 7.6% P377P (CCT→CCG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,052 C→A 10.6% A683A (GCC→GCA)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,067 C→T 10.1% I688I (ATC→ATT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,070 A→G 10.6% K689K (AAA→AAG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,073 G→T 10.1% T690T (ACG→ACT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,079 T→C 9.8% Y692Y (TAT→TAC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,098 A→G 9.1% M699V (ATG→GTG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,100 G→T 9.1% M699I (ATG→ATT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,109 A→G 9.0% E702E (GAA→GAG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,112 C→T 7.9% G703G (GGC→GGT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,118 A→G 7.2% E705E (GAA→GAG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,119 A→G 7.2% I706V (ATT→GTT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,121 T→C 7.1% I706I (ATT→ATC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,124 A→G 7.3% E707E (GAA→GAG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,127 C→T 7.3% G708G (GGC→GGT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,133 C→A 6.3% V710V (GTC→GTA)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,195 A→C 11.7% K13T (AAG→ACG)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,200 T→C 12.2% S15P (TCT→CCT)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,205 C→T 11.9% D16D (GAC→GAT)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,208 T→C 11.7% D17D (GAT→GAC)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,211 A→G 12.0% K18K (AAA→AAG)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,217 G→C 12.1% L20L (CTG→CTC)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,227 A→G 12.4% N24D (AAT→GAT)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,232 C→T 11.7% R25R (CGC→CGT)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,239 A→G 11.3% S28G (AGC→GGC)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,241 C→T 11.4% S28S (AGC→AGT)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,244 T→C 11.6% N29N (AAT→AAC)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,251 C→T 10.8% L32L (CTA→TTA)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,253 A→G 10.6% L32L (CTA→CTG)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,256 A→G 10.3% P33P (CCA→CCG)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,277 C→T 8.0% N40N (AAC→AAT)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
JC 2,865,274 +46 bp 49.1% coding (817/876 nt) rpoS ← RNA polymerase, sigma S (sigma 38) factor
JC 2,865,278 +92 bp 26.5% coding (813/876 nt) rpoS ← RNA polymerase, sigma S (sigma 38) factor
RA 2,866,111 A→G 100% intergenic (‑21/+159) rpoS ← / ← nlpD RNA polymerase, sigma S (sigma 38) factor/outer membrane lipoprotein
RA 2,908,106 G→A 3.9% L73L (CTG→TTG)  pyrG ← CTP synthetase
RA 2,908,122 A→T 5.1% A67A (GCT→GCA)  pyrG ← CTP synthetase
RA 2,908,125 G→A 5.3% G66G (GGC→GGT)  pyrG ← CTP synthetase
RA 2,908,134 A→G 5.2% T63T (ACT→ACC)  pyrG ← CTP synthetase
RA 2,908,137 A→G 5.2% V62V (GTT→GTC)  pyrG ← CTP synthetase
RA 2,908,143 C→G 5.4% V60V (GTG→GTC)  pyrG ← CTP synthetase
RA 2,908,146 T→C 5.3% E59E (GAA→GAG)  pyrG ← CTP synthetase
RA 2,908,149 C→G 5.2% G58G (GGG→GGC)  pyrG ← CTP synthetase
RA 2,908,155 T→C 5.4% Q56Q (CAA→CAG)  pyrG ← CTP synthetase
RA 2,908,160 T→A 5.0% I55F (ATC→TTC)  pyrG ← CTP synthetase
RA 2,908,161 T→G 5.0% P54P (CCA→CCC)  pyrG ← CTP synthetase
RA 2,908,165 C→T 5.1% S53N (AGC→AAC)  pyrG ← CTP synthetase
RA 2,908,170 A→G 5.1% T51T (ACT→ACC)  pyrG ← CTP synthetase
RA 2,908,173 A→G 5.0% G50G (GGT→GGC)  pyrG ← CTP synthetase
RA 2,908,176 T→C 5.0% P49P (CCA→CCG)  pyrG ← CTP synthetase
RA 2,908,179 A→G 3.8% D48D (GAT→GAC)  pyrG ← CTP synthetase
RA 2,908,182 G→C 3.4% V47V (GTC→GTG)  pyrG ← CTP synthetase
RA 2,908,185 G→A 3.0% N46N (AAC→AAT)  pyrG ← CTP synthetase
RA 2,908,190 T→G 3.0% I45L (ATC→CTC)  pyrG ← CTP synthetase
RA 3,003,330 G→A 100% L371L (CTC→CTT)  ygeV ← DNA‑binding transcriptional regulator
RA 3,033,057 G→A 7.7% I258I (ATC→ATT)  lysS ← lysine tRNA synthetase
RA 3,033,060 T→C 7.9% E257E (GAA→GAG)  lysS ← lysine tRNA synthetase
RA 3,033,063 G→A 7.8% F256F (TTC→TTT)  lysS ← lysine tRNA synthetase
RA 3,033,066 T→G 7.5% V255V (GTA→GTC)  lysS ← lysine tRNA synthetase
RA 3,033,069 A→T 7.8% R254R (CGT→CGA)  lysS ← lysine tRNA synthetase
RA 3,033,075 G→C 7.5% F252L (TTC→TTG)  lysS ← lysine tRNA synthetase
RA 3,033,077 A→T 7.5% F252I (TTC→ATC)  lysS ← lysine tRNA synthetase
RA 3,033,078 G→A 7.3% G251G (GGC→GGT)  lysS ← lysine tRNA synthetase
RA 3,033,081 A→G 7.9% G250G (GGT→GGC)  lysS ← lysine tRNA synthetase
RA 3,033,084 A→G 7.9% V249V (GTT→GTC)  lysS ← lysine tRNA synthetase
RA 3,033,087 C→G 7.9% V248V (GTG→GTC)  lysS ← lysine tRNA synthetase
RA 3,033,089 +G 7.6% coding (742/1518 nt) lysS ← lysine tRNA synthetase
RA 3,033,093 Δ1 bp 7.2% coding (738/1518 nt) lysS ← lysine tRNA synthetase
RA 3,033,103 T→A 7.1% Y243F (TAC→TTC)  lysS ← lysine tRNA synthetase
RA 3,033,108 T→C 6.8% E241E (GAA→GAG)  lysS ← lysine tRNA synthetase
RA 3,033,120 A→G 7.0% R237R (CGT→CGC)  lysS ← lysine tRNA synthetase
RA 3,049,815 G→T 100% R387S (CGC→AGC)  visC ← oxidoreductase
JC 3,070,186 Δ3 bp 6.1% coding (1091‑1093/1164 nt) pgk ← phosphoglycerate kinase
JC 3,175,000 Δ3 bp 20.7% coding (488‑490/828 nt) cpdA ← cyclic 3',5'‑adenosine monophosphate phosphodiesterase
RA 3,175,167 Δ1 bp 2.2% coding (323/828 nt) cpdA ← cyclic 3',5'‑adenosine monophosphate phosphodiesterase
RA 3,270,195 G→T 4.2% intergenic (+738/+285) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,206 G→T 3.8% intergenic (+749/+274) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,220 G→T 3.6% intergenic (+763/+260) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,221 T→A 3.5% intergenic (+764/+259) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,225 Δ1 bp 3.6% intergenic (+768/+255) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,226 C→G 3.5% intergenic (+769/+254) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,229 A→G 3.5% intergenic (+772/+251) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,231 T→A 3.5% intergenic (+774/+249) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,232 G→A 3.5% intergenic (+775/+248) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,234 T→C 3.5% intergenic (+777/+246) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,237 C→T 3.5% intergenic (+780/+243) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,238 A→T 3.5% intergenic (+781/+242) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,245 +T 3.7% intergenic (+788/+235) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,265 C→T 3.3% intergenic (+808/+215) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,275 T→C 3.2% intergenic (+818/+205) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,270,279 T→G 3.3% intergenic (+822/+201) yhaC → / ← garK hypothetical protein/glycerate kinase I
RA 3,306,717 G→A 5.4% I333I (ATC→ATT)  deaD ← ATP‑dependent RNA helicase
RA 3,306,720 A→G 5.4% R332R (CGT→CGC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,726 A→G 5.5% V330V (GTT→GTC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,732 A→G 5.4% S328S (TCT→TCC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,738 A→G 5.3% S326S (TCT→TCC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,740 A→T 5.4% S326T (TCT→ACT)  deaD ← ATP‑dependent RNA helicase
RA 3,306,741 A→G 5.4% D325D (GAT→GAC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,744 C→G 5.5% M324I (ATG→ATC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,745 A→T 5.5% M324K (ATG→AAG)  deaD ← ATP‑dependent RNA helicase
RA 3,306,746 T→G 6.0% M324L (ATG→CTG)  deaD ← ATP‑dependent RNA helicase
RA 3,306,750 G→A 6.9% I322I (ATC→ATT)  deaD ← ATP‑dependent RNA helicase
RA 3,306,753 A→G 6.8% D321D (GAT→GAC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,762 A→G 6.9% V318V (GTT→GTC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,765 T→C 6.9% V317V (GTA→GTG)  deaD ← ATP‑dependent RNA helicase
RA 3,306,768 C→G 6.9% L316L (CTG→CTC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,769 A→T 6.7% L316Q (CTG→CAG)  deaD ← ATP‑dependent RNA helicase
RA 3,306,772 C→G 6.7% S315T (AGC→ACC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,773 T→A 6.7% S315C (AGC→TGC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,774 G→A 7.0% I314I (ATC→ATT)  deaD ← ATP‑dependent RNA helicase
RA 3,306,777 A→G 6.7% R313R (CGT→CGC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,780 C→G 6.8% E312D (GAG→GAC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,798 G→A 4.7% A306A (GCC→GCT)  deaD ← ATP‑dependent RNA helicase
RA 3,306,801 T→A 4.1% A305A (GCA→GCT)  deaD ← ATP‑dependent RNA helicase
RA 3,306,804 A→C 2.4% V304V (GTT→GTG)  deaD ← ATP‑dependent RNA helicase
RA 3,314,445 C→G 7.0% V475V (GTG→GTC)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,448 A→G 7.1% G474G (GGT→GGC)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,454 G→A 10.8% D472D (GAC→GAT)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,457 G→A 12.0% A471A (GCC→GCT)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,460 A→T 12.0% A470A (GCT→GCA)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,472 G→A 12.0% V466V (GTC→GTT)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,474 C→T 11.8% V466I (GTC→ATC)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,475 T→C 11.9% V465V (GTA→GTG)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,476 A→G 11.8% V465A (GTA→GCA)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,481 G→A 11.9% D463D (GAC→GAT)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,484 C→G 12.2% T462T (ACG→ACC)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,487 T→C 12.2% A461A (GCA→GCG)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,489 C→A 12.2% A461S (GCA→TCA)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,492 G→T 12.5% Q460K (CAG→AAG)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,523 G→C 12.7% A449A (GCC→GCG)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,524 G→T 13.0% A449D (GCC→GAC)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,529 C→A 10.1% G447G (GGG→GGT)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,532 C→A 10.1% P446P (CCG→CCT)  infB ← fused protein chain initiation factor 2, IF2
RA 3,326,032 G→A 5.1% I253I (ATC→ATT)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,035 T→C 5.1% E252E (GAA→GAG)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,038 A→G 5.1% D251D (GAT→GAC)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,059 Δ1 bp 14.6% coding (732/1935 nt) ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,062 C→T 14.6% A243A (GCG→GCA)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,064 C→T 14.3% A243T (GCG→ACG)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,067 +C 15.0% coding (724/1935 nt) ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,071 C→G 14.7% A240A (GCG→GCC)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,077 T→A 14.3% E238D (GAA→GAT)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,079 C→T 14.0% E238K (GAA→AAA)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,080 G→A 14.3% F237F (TTC→TTT)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,085 T→A 14.2% M236L (ATG→TTG)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,092 A→G 14.9% V233V (GTT→GTC)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,098 G→A 15.5% S231S (TCC→TCT)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,101 T→G 15.3% A230A (GCA→GCC)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,107 C→G 16.3% V228V (GTG→GTC)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,125 T→G 13.5% V222V (GTA→GTC)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,134 A→C 8.5% S219S (TCT→TCG)  ftsH ← protease, ATP‑dependent zinc‑metallo
JC 3,342,930 Δ3 bp 3.1% coding (240‑242/576 nt) yrbK → hypothetical protein
RA 3,397,813 C→G 100% D141H (GAT→CAT)  yhdE ← hypothetical protein
RA 3,441,343 A→G 10.3% E254E (GAA→GAG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,347 C→A 10.6% L256M (CTG→ATG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,352 A→G 12.5% V257V (GTA→GTG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,356 T→G 12.4% S259A (TCC→GCC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,358 C→G 12.2% S259S (TCC→TCG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,364 C→T 12.4% R261R (CGC→CGT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,370 A→C 15.1% G263G (GGA→GGC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,376 T→C 15.3% D265D (GAT→GAC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,379 G→C 15.5% T266T (ACG→ACC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,380 G→A 15.4% V267M (GTG→ATG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,382 G→C 15.5% V267V (GTG→GTC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,404 T→G 23.5% Y275D (TAT→GAT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,406 T→C 23.6% Y275Y (TAT→TAC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,431 T→C 17.0% L284L (TTG→CTG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,952 G→T 3.9% A457A (GCG→GCT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,958 T→C 3.9% F459F (TTT→TTC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,967 G→C 3.9% L462L (CTG→CTC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,970 G→C 3.9% G463G (GGG→GGC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,976 A→G 3.8% L465L (CTA→CTG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,977 A→G 3.8% T466A (ACT→GCT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,979 T→A 3.7% T466T (ACT→ACA)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,985 T→C 7.0% D468D (GAT→GAC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,988 T→C 6.9% I469I (ATT→ATC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,007 T→A 9.4% F476I (TTC→ATC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,017 G→C 9.5% G479A (GGG→GCG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,018 G→T 9.6% G479G (GGG→GGT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,021 T→C 9.2% I480I (ATT→ATC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,024 T→C 9.2% G481G (GGT→GGC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,030 G→A 10.0% A483A (GCG→GCA)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,033 G→C 9.6% M484I (ATG→ATC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,037 +C 5.8% coding (1456/1896 nt) thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,040 T→A 5.7% W487R (TGG→AGG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,044 T→C 5.7% F488S (TTT→TCT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,048 C→T 5.7% G489G (GGC→GGT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,049 T→A 5.7% C490S (TGC→AGC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,050 G→C 5.8% C490S (TGC→TCC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,054 G→C 5.8% A491A (GCG→GCC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,063 T→C 5.7% C494C (TGT→TGC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,069 A→C 6.1% V496V (GTA→GTC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,075 A→G 3.4% P498P (CCA→CCG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,078 A→G 3.5% K499K (AAA→AAG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,162 G→A 4.4% A527A (GCG→GCA)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,165 A→G 4.0% K528K (AAA→AAG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,170 A→T 3.8% H530L (CAT→CTT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,171 T→G 3.8% H530Q (CAT→CAG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,175 G→C 4.0% G532R (GGC→CGC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,180 G→T 4.0% A533A (GCG→GCT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,183 A→G 4.3% Q534Q (CAA→CAG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,184 A→G 4.3% I535V (ATT→GTT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,185 T→A 4.2% I535N (ATT→AAT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,186 T→G 4.2% I535M (ATT→ATG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,189 C→T 4.2% R536R (CGC→CGT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,192 T→C 3.8% D537D (GAT→GAC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,193 A→G 4.1% N538D (AAC→GAC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,198 C→G 4.0% A539A (GCC→GCG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,199 A→C 4.0% M540L (ATG→CTG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,207 A→G 4.2% K542K (AAA→AAG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,213 C→T 4.2% R544R (CGC→CGT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,219 A→G 3.7% E546E (GAA→GAG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,222 T→C 3.7% F547F (TTT→TTC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,225 C→T 3.6% R548R (CGC→CGT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,229 G→C 3.3% E550Q (GAA→CAA)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,231 A→T 3.3% E550D (GAA→GAT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,449,979 C→T 6.5% P451P (CCG→CCA)  rpoC ← RNA polymerase, beta prime subunit
RA 3,449,991 G→A 12.7% I447I (ATC→ATT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,449,994 A→T 12.6% A446A (GCT→GCA)  rpoC ← RNA polymerase, beta prime subunit
RA 3,449,997 T→C 12.8% K445K (AAA→AAG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,003 T→C 12.4% E443E (GAA→GAG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,006 G→A 12.4% I442I (ATC→ATT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,008 T→C 12.4% I442V (ATC→GTC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,012 T→G 12.7% V440V (GTA→GTC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,018 T→C 12.3% E438E (GAA→GAG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,021 A→G 11.6% F437F (TTT→TTC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,024 T→C 12.1% A436A (GCA→GCG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,030 G→A 12.1% I434I (ATC→ATT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,039 A→G 11.8% R431R (CGT→CGC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,048 A→C 12.2% T428T (ACT→ACG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,051 C→A 12.1% P427P (CCG→CCT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,069 T→G 9.2% V421V (GTA→GTC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,210 C→A 5.8% L374L (CTG→CTT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,213 T→A 5.8% A373A (GCA→GCT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,219 T→C 6.3% K371K (AAA→AAG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,220 T→A 6.3% K371I (AAA→ATA)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,221 T→G 6.4% K371Q (AAA→CAA)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,234 G→A 14.8% C366C (TGC→TGT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,240 A→G 14.8% H364H (CAT→CAC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,246 A→C 15.0% R362R (CGT→CGG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,247 C→T 15.4% R362H (CGT→CAT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,248 G→T 15.4% R362S (CGT→AGT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,252 G→C 15.0% Y360* (TAC→TAG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,254 A→G 15.0% Y360H (TAC→CAC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,255 T→C 15.5% P359P (CCA→CCG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,258 A→G 15.5% G358G (GGT→GGC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,261 T→G 15.8% V357V (GTA→GTC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,265 G→A 15.7% T356I (ACC→ATC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,267 G→A 16.2% I355I (ATC→ATT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,270 T→A 16.4% V354V (GTA→GTT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,273 A→C 16.2% S353S (TCT→TCG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,279 A→G 16.3% G351G (GGT→GGC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,303 G→C 10.6% L343L (CTC→CTG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,451,558 A→G 5.8% V1293V (GTT→GTC)  rpoB ← RNA polymerase subunit beta
RA 3,451,560 C→T 5.7% V1293I (GTT→ATT)  rpoB ← RNA polymerase subunit beta
RA 3,451,569 T→G 9.4% M1290L (ATG→CTG)  rpoB ← RNA polymerase subunit beta
RA 3,451,570 T→C 9.3% E1289E (GAA→GAG)  rpoB ← RNA polymerase subunit beta
RA 3,451,585 T→G 16.1% A1284A (GCA→GCC)  rpoB ← RNA polymerase subunit beta
RA 3,451,588 T→A 16.1% A1283A (GCA→GCT)  rpoB ← RNA polymerase subunit beta
RA 3,451,600 T→C 20.3% E1279E (GAA→GAG)  rpoB ← RNA polymerase subunit beta
RA 3,451,602 C→G 20.1% E1279Q (GAA→CAA)  rpoB ← RNA polymerase subunit beta
RA 3,451,605 G→T 20.3% L1278M (CTG→ATG)  rpoB ← RNA polymerase subunit beta
RA 3,451,606 C→T 20.3% A1277A (GCG→GCA)  rpoB ← RNA polymerase subunit beta
RA 3,451,615 T→C 28.9% E1274E (GAA→GAG)  rpoB ← RNA polymerase subunit beta
RA 3,451,624 C→A 31.7% G1271G (GGG→GGT)  rpoB ← RNA polymerase subunit beta
RA 3,451,630 A→G 33.5% R1269R (CGT→CGC)  rpoB ← RNA polymerase subunit beta
RA 3,451,648 T→A 36.9% A1263A (GCA→GCT)  rpoB ← RNA polymerase subunit beta
RA 3,451,677 C→T 36.6% V1254I (GTT→ATT)  rpoB ← RNA polymerase subunit beta
RA 3,451,680 G→T 33.2% L1253M (CTG→ATG)  rpoB ← RNA polymerase subunit beta
RA 3,451,682 C→G 33.3% S1252T (AGC→ACC)  rpoB ← RNA polymerase subunit beta
RA 3,451,683 T→A 33.7% S1252C (AGC→TGC)  rpoB ← RNA polymerase subunit beta
RA 3,451,687 A→C 33.2% S1250S (TCT→TCG)  rpoB ← RNA polymerase subunit beta
RA 3,451,689 A→G 33.8% S1250P (TCT→CCT)  rpoB ← RNA polymerase subunit beta
RA 3,451,702 C→A 32.8% A1245A (GCG→GCT)  rpoB ← RNA polymerase subunit beta
RA 3,451,708 C→A 32.0% M1243I (ATG→ATT)  rpoB ← RNA polymerase subunit beta
RA 3,451,714 G→C 31.1% D1241E (GAC→GAG)  rpoB ← RNA polymerase subunit beta
RA 3,451,726 G→T 4.5% H1237Q (CAC→CAA)  rpoB ← RNA polymerase subunit beta
RA 3,451,731 T→G 24.6% N1236H (AAC→CAC)  rpoB ← RNA polymerase subunit beta
RA 3,451,735 T→C 21.9% K1234K (AAA→AAG)  rpoB ← RNA polymerase subunit beta
RA 3,451,753 A→G 15.1% G1228G (GGT→GGC)  rpoB ← RNA polymerase subunit beta
RA 3,451,756 A→C 14.6% V1227V (GTT→GTG)  rpoB ← RNA polymerase subunit beta
RA 3,451,759 G→C 9.3% T1226T (ACC→ACG)  rpoB ← RNA polymerase subunit beta
RA 3,451,761 T→A 9.8% T1226S (ACC→TCC)  rpoB ← RNA polymerase subunit beta
RA 3,451,762 T→A 9.8% V1225V (GTA→GTT)  rpoB ← RNA polymerase subunit beta
RA 3,451,768 A→G 8.8% R1223R (CGT→CGC)  rpoB ← RNA polymerase subunit beta
RA 3,451,769 C→A 8.8% R1223L (CGT→CTT)  rpoB ← RNA polymerase subunit beta
RA 3,451,770 G→A 8.8% R1223C (CGT→TGT)  rpoB ← RNA polymerase subunit beta
RA 3,451,772 T→G 8.8% E1222A (GAG→GCG)  rpoB ← RNA polymerase subunit beta
RA 3,451,773 C→G 8.6% E1222Q (GAG→CAG)  rpoB ← RNA polymerase subunit beta
RA 3,451,783 A→G 8.7% G1218G (GGT→GGC)  rpoB ← RNA polymerase subunit beta
RA 3,451,788 T→A 8.4% T1217S (ACT→TCT)  rpoB ← RNA polymerase subunit beta
RA 3,451,792 A→G 6.5% G1215G (GGT→GGC)  rpoB ← RNA polymerase subunit beta
RA 3,451,795 A→G 4.5% D1214D (GAT→GAC)  rpoB ← RNA polymerase subunit beta
RA 3,451,799 T→A 3.5% Y1213F (TAC→TTC)  rpoB ← RNA polymerase subunit beta
RA 3,453,367 A→C 3.9% V690V (GTT→GTG)  rpoB ← RNA polymerase subunit beta
RA 3,453,370 G→A 3.9% A689A (GCC→GCT)  rpoB ← RNA polymerase subunit beta
RA 3,453,379 T→C 6.4% Q686Q (CAA→CAG)  rpoB ← RNA polymerase subunit beta
RA 3,453,399 A→G 6.5% L680L (TTG→CTG)  rpoB ← RNA polymerase subunit beta
RA 3,453,400 T→G 6.5% A679A (GCA→GCC)  rpoB ← RNA polymerase subunit beta
RA 3,453,409 G→A 6.9% A676A (GCC→GCT)  rpoB ← RNA polymerase subunit beta
RA 3,453,415 A→G 7.4% D674D (GAT→GAC)  rpoB ← RNA polymerase subunit beta
RA 3,453,421 T→C 8.0% E672E (GAA→GAG)  rpoB ← RNA polymerase subunit beta
RA 3,453,424 C→G 7.7% L671L (CTG→CTC)  rpoB ← RNA polymerase subunit beta
RA 3,453,433 G→A 7.4% I668I (ATC→ATT)  rpoB ← RNA polymerase subunit beta
RA 3,453,438 G→T 8.1% L667M (CTG→ATG)  rpoB ← RNA polymerase subunit beta
RA 3,453,441 A→C 7.7% S666A (TCC→GCC)  rpoB ← RNA polymerase subunit beta
RA 3,453,442 C→A 7.7% A665A (GCG→GCT)  rpoB ← RNA polymerase subunit beta
RA 3,453,444 C→T 7.5% A665T (GCG→ACG)  rpoB ← RNA polymerase subunit beta
RA 3,453,446 C→G 8.1% G664A (GGT→GCT)  rpoB ← RNA polymerase subunit beta
RA 3,453,448 G→C 7.7% V663V (GTC→GTG)  rpoB ← RNA polymerase subunit beta
RA 3,453,454 T→G 7.6% V661V (GTA→GTC)  rpoB ← RNA polymerase subunit beta
RA 3,453,459 C→T 6.9% V660M (GTG→ATG)  rpoB ← RNA polymerase subunit beta
RA 3,453,814 T→G 4.6% E541D (GAA→GAC)  rpoB ← RNA polymerase subunit beta
RA 3,453,829 G→A 6.7% G536G (GGC→GGT)  rpoB ← RNA polymerase subunit beta
RA 3,453,832 T→C 6.4% P535P (CCA→CCG)  rpoB ← RNA polymerase subunit beta
RA 3,453,835 G→A 6.6% G534G (GGC→GGT)  rpoB ← RNA polymerase subunit beta
RA 3,453,838 G→C 6.5% L533L (CTC→CTG)  rpoB ← RNA polymerase subunit beta
RA 3,453,847 G→C 6.6% I530M (ATC→ATG)  rpoB ← RNA polymerase subunit beta
RA 3,453,849 T→G 6.5% I530L (ATC→CTC)  rpoB ← RNA polymerase subunit beta
RA 3,453,856 T→C 6.5% K527K (AAA→AAG)  rpoB ← RNA polymerase subunit beta
RA 3,453,865 A→C 6.2% I524M (ATT→ATG)  rpoB ← RNA polymerase subunit beta
RA 3,453,867 T→G 6.3% I524L (ATT→CTT)  rpoB ← RNA polymerase subunit beta
RA 3,453,868 C→A 6.3% E523D (GAG→GAT)  rpoB ← RNA polymerase subunit beta
RA 3,453,871 A→C 6.3% S522S (TCT→TCG)  rpoB ← RNA polymerase subunit beta
RA 3,453,879 G→A 6.3% P520S (CCG→TCG)  rpoB ← RNA polymerase subunit beta
RA 3,453,895 A→G 5.5% F514F (TTT→TTC)  rpoB ← RNA polymerase subunit beta
JC 3,544,162 +GGC 2.4% coding (305/447 nt) frvA → PTS system transporter subunit IIA
RA 3,682,560 T→A 11.2% Q215L (CAG→CTG)  ilvD ← dihydroxyacid dehydratase
RA 3,682,571 C→G 10.9% L211L (CTG→CTC)  ilvD ← dihydroxyacid dehydratase
RA 3,682,577 T→C 10.5% E209E (GAA→GAG)  ilvD ← dihydroxyacid dehydratase
RA 3,682,595 T→C 9.7% S203S (TCA→TCG)  ilvD ← dihydroxyacid dehydratase
RA 3,682,601 A→T 9.6% A201A (GCT→GCA)  ilvD ← dihydroxyacid dehydratase
RA 3,682,607 A→G 9.6% F199F (TTT→TTC)  ilvD ← dihydroxyacid dehydratase
RA 3,682,613 C→A 9.7% G197G (GGG→GGT)  ilvD ← dihydroxyacid dehydratase
RA 3,682,616 G→C 9.6% S196S (TCC→TCG)  ilvD ← dihydroxyacid dehydratase
RA 3,682,622 G→A 9.7% S194S (TCC→TCT)  ilvD ← dihydroxyacid dehydratase
RA 3,682,628 G→A 9.1% C192C (TGC→TGT)  ilvD ← dihydroxyacid dehydratase
RA 3,682,637 A→G 9.5% C189C (TGT→TGC)  ilvD ← dihydroxyacid dehydratase
RA 3,682,643 G→C 7.6% S187S (TCC→TCG)  ilvD ← dihydroxyacid dehydratase
RA 3,682,646 A→G 5.7% R186R (CGT→CGC)  ilvD ← dihydroxyacid dehydratase
RA 3,682,649 T→C 4.7% E185E (GAA→GAG)  ilvD ← dihydroxyacid dehydratase
RA 3,717,810 T→C 6.8% I329I (ATT→ATC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,816 A→G 6.8% E331E (GAA→GAG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,820 C→A 6.5% Q333K (CAG→AAG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,825 G→A 6.5% A334A (GCG→GCA)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,826 G→A 6.5% G335S (GGT→AGT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,827 G→A 6.4% G335D (GGT→GAT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,828 T→C 6.3% G335G (GGT→GGC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,834 T→G 5.9% V337V (GTT→GTG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,837 T→G 6.2% S338S (TCT→TCG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,840 G→C 6.8% A339A (GCG→GCC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,844 G→A 6.9% V341I (GTT→ATT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,858 A→C 6.6% V345V (GTA→GTC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,873 T→C 9.3% D350D (GAT→GAC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,876 T→C 9.0% G351G (GGT→GGC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,880 A→G 12.4% I353V (ATC→GTC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,888 G→C 10.8% L355L (CTG→CTC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,891 A→G 9.5% E356E (GAA→GAG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,892 A→T 9.5% T357S (ACC→TCC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,895 A→G 9.5% N358D (AAC→GAC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,908 C→A 11.4% A362D (GCC→GAC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,909 C→G 11.4% A362A (GCC→GCG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,913 A→G 11.4% I364V (ATT→GTT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,915 T→C 11.8% I364I (ATT→ATC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,918 T→C 11.8% R365R (CGT→CGC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,921 T→G 12.1% P366P (CCT→CCG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,924 G→T 12.4% A367A (GCG→GCT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,925 G→A 12.8% V368I (GTT→ATT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,931 C→G 12.7% P370A (CCG→GCG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,932 C→T 12.7% P370L (CCG→CTG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,933 G→C 12.6% P370P (CCG→CCC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,937 A→G 12.8% I372V (ATT→GTT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,939 T→G 12.4% I372M (ATT→ATG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,942 C→G 12.5% S373S (TCC→TCG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
MC JC 3,742,936 Δ1,336 bp 100% insD–insC insD, insC
MC JC 3,746,911 Δ1,199 bp 100% insH insH
RA 3,750,122 Δ1 bp 95.7% coding (365/1416 nt) tnaA ← tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
RA 3,750,123 C→T 2.6% G122S (GGC→AGC)  tnaA ← tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
MC JC 3,750,591 Δ1,199 bp 100% insH insH
RA 3,884,404 T→C 6.4% I167I (ATT→ATC)  aldB → aldehyde dehydrogenase B
RA 3,884,425 G→C 7.0% L174L (CTG→CTC)  aldB → aldehyde dehydrogenase B
RA 3,884,434 G→C 4.6% A177A (GCG→GCC)  aldB → aldehyde dehydrogenase B
RA 3,884,436 G→C 4.5% S178T (AGC→ACC)  aldB → aldehyde dehydrogenase B
RA 3,884,437 C→G 4.5% S178R (AGC→AGG)  aldB → aldehyde dehydrogenase B
RA 3,884,446 G→C 6.9% M181I (ATG→ATC)  aldB → aldehyde dehydrogenase B
RA 3,884,452 C→G 7.3% P183P (CCC→CCG)  aldB → aldehyde dehydrogenase B
RA 3,884,461 G→C 7.5% A186A (GCG→GCC)  aldB → aldehyde dehydrogenase B
RA 3,884,464 G→C 7.4% A187A (GCG→GCC)  aldB → aldehyde dehydrogenase B
RA 3,884,473 T→C 7.4% C190C (TGT→TGC)  aldB → aldehyde dehydrogenase B
RA 3,884,474 G→A 7.6% V191M (GTG→ATG)  aldB → aldehyde dehydrogenase B
RA 3,884,476 G→C 7.7% V191V (GTG→GTC)  aldB → aldehyde dehydrogenase B
RA 3,884,479 G→A 7.5% V192V (GTG→GTA)  aldB → aldehyde dehydrogenase B
RA 3,884,482 G→C 7.1% L193L (CTG→CTC)  aldB → aldehyde dehydrogenase B
RA 3,884,485 A→G 7.5% K194K (AAA→AAG)  aldB → aldehyde dehydrogenase B
RA 3,898,657 C→G 100% L259V (CTG→GTG)  yiaJ → DNA‑binding transcriptional repressor
MC JC 3,958,123 Δ34 bp 100% coding (1156‑1189/1287 nt) dctA → C4‑dicarboxylic acid, orotate and citrate transporter
RA 4,051,642 C→G 2.0% S136S (TCC→TCG)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,654 C→T 4.7% R140R (CGC→CGT)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,660 T→C 6.8% R142R (CGT→CGC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,678 G→C 8.8% A148A (GCG→GCC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,681 T→C 8.8% I149I (ATT→ATC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,684 G→C 9.4% V150V (GTG→GTC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,688 G→C 8.9% D152H (GAT→CAT)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,689 A→G 8.5% D152G (GAT→GGT)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,690 T→A 8.3% D152E (GAT→GAA)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,694 G→A 9.8% A154T (GCG→ACG)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,695 C→A 9.9% A154E (GCG→GAG)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,699 G→C 9.4% V155V (GTG→GTC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,705 G→C 9.5% L157L (CTG→CTC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,706 T→A 9.6% F158I (TTT→ATT)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,708 T→G 10.2% F158L (TTT→TTG)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,711 T→C 10.4% D159D (GAT→GAC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,741 G→C 6.3% L169L (CTG→CTC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,090,749 A→T 100% Q135L (CAG→CTG)  malQ → 4‑alpha‑glucanotransferase
RA 4,153,863 G→A 14.7% A145V (GCA→GTA)  crp ← DNA‑binding transcriptional dual regulator
RA 4,165,991 A→C 100% K43T (AAA→ACA)  rpsL → 30S ribosomal protein S12
RA 4,166,073 A→G 9.6% E70E (GAA→GAG)  rpsL → 30S ribosomal protein S12
RA 4,166,076 T→C 9.7% G71G (GGT→GGC)  rpsL → 30S ribosomal protein S12
RA 4,166,098 G→A 11.5% V79M (GTG→ATG)  rpsL → 30S ribosomal protein S12
RA 4,166,101 A→G 13.3% I80V (ATC→GTC)  rpsL → 30S ribosomal protein S12
RA 4,166,103 C→G 13.3% I80M (ATC→ATG)  rpsL → 30S ribosomal protein S12
RA 4,166,106 G→C 13.3% L81L (CTG→CTC)  rpsL → 30S ribosomal protein S12
RA 4,166,107 A→G 13.3% I82V (ATC→GTC)  rpsL → 30S ribosomal protein S12
RA 4,166,109 C→T 13.3% I82I (ATC→ATT)  rpsL → 30S ribosomal protein S12
RA 4,166,112 T→C 12.4% R83R (CGT→CGC)  rpsL → 30S ribosomal protein S12
RA 4,166,115 C→T 12.1% G84G (GGC→GGT)  rpsL → 30S ribosomal protein S12
RA 4,166,127 A→G 15.9% K88K (AAA→AAG)  rpsL → 30S ribosomal protein S12
RA 4,166,142 T→C 15.3% V93V (GTT→GTC)  rpsL → 30S ribosomal protein S12
RA 4,166,145 T→C 15.1% R94R (CGT→CGC)  rpsL → 30S ribosomal protein S12
RA 4,166,149 C→A 15.7% H96N (CAC→AAC)  rpsL → 30S ribosomal protein S12
RA 4,166,151 C→G 15.8% H96Q (CAC→CAG)  rpsL → 30S ribosomal protein S12
RA 4,166,153 C→T 15.5% T97I (ACC→ATC)  rpsL → 30S ribosomal protein S12
RA 4,166,157 A→C 15.2% V98V (GTA→GTC)  rpsL → 30S ribosomal protein S12
RA 4,166,164 G→T 7.0% A101S (GCG→TCG)  rpsL → 30S ribosomal protein S12
RA 4,166,169 T→C 6.4% L102L (CTT→CTC)  rpsL → 30S ribosomal protein S12
RA 4,166,173 T→A 4.3% C104S (TGC→AGC)  rpsL → 30S ribosomal protein S12
RA 4,166,174 G→C 4.1% C104S (TGC→TCC)  rpsL → 30S ribosomal protein S12
RA 4,166,177 C→A 4.2% S105Y (TCC→TAC)  rpsL → 30S ribosomal protein S12
RA 4,166,178 C→G 4.2% S105S (TCC→TCG)  rpsL → 30S ribosomal protein S12
RA 4,166,181 C→T 4.1% G106G (GGC→GGT)  rpsL → 30S ribosomal protein S12
RA 4,166,184 T→C 4.0% V107V (GTT→GTC)  rpsL → 30S ribosomal protein S12
RA 4,166,187 A→G 4.2% K108K (AAA→AAG)  rpsL → 30S ribosomal protein S12
RA 4,166,193 T→C 4.1% R110R (CGT→CGC)  rpsL → 30S ribosomal protein S12
RA 4,168,290 A→G 8.6% E463E (GAA→GAG)  fusA → protein chain elongation factor EF‑G
RA 4,168,293 G→C 8.5% L464L (CTG→CTC)  fusA → protein chain elongation factor EF‑G
RA 4,168,303 A→G 14.6% I468V (ATC→GTC)  fusA → protein chain elongation factor EF‑G
RA 4,168,306 A→C 14.6% I469L (ATC→CTC)  fusA → protein chain elongation factor EF‑G
RA 4,168,308 C→G 14.5% I469M (ATC→ATG)  fusA → protein chain elongation factor EF‑G
RA 4,168,317 T→C 13.8% R472R (CGT→CGC)  fusA → protein chain elongation factor EF‑G
RA 4,168,329 A→G 14.4% E476E (GAA→GAG)  fusA → protein chain elongation factor EF‑G
RA 4,168,335 C→G 15.0% N478K (AAC→AAG)  fusA → protein chain elongation factor EF‑G
RA 4,168,338 T→C 15.1% V479V (GTT→GTC)  fusA → protein chain elongation factor EF‑G
RA 4,168,344 G→A 15.3% A481A (GCG→GCA)  fusA → protein chain elongation factor EF‑G
RA 4,168,348 G→A 15.9% V483I (GTA→ATA)  fusA → protein chain elongation factor EF‑G
RA 4,168,350 A→C 15.5% V483V (GTA→GTC)  fusA → protein chain elongation factor EF‑G
RA 4,168,356 A→C 16.9% K485N (AAA→AAC)  fusA → protein chain elongation factor EF‑G
RA 4,168,374 T→C 13.6% R491R (CGT→CGC)  fusA → protein chain elongation factor EF‑G
RA 4,168,377 A→G 12.9% E492E (GAA→GAG)  fusA → protein chain elongation factor EF‑G
RA 4,168,380 T→C 10.6% T493T (ACT→ACC)  fusA → protein chain elongation factor EF‑G
RA 4,168,387 C→A 6.7% Q496K (CAG→AAG)  fusA → protein chain elongation factor EF‑G
RA 4,169,320 A→T 26.6% A78A (GCA→GCT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,326 A→C 23.5% V80V (GTA→GTC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,330 T→G 21.0% C82G (TGC→GGC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,331 G→C 20.1% C82S (TGC→TCC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,332 C→T 19.9% C82C (TGC→TGT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,338 G→C 32.3% G84G (GGG→GGC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,350 T→C 32.7% Y88Y (TAT→TAC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,351 G→A 32.7% V89I (GTT→ATT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,353 T→C 32.6% V89V (GTT→GTC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,356 A→G 31.9% K90K (AAA→AAG)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,395 C→T 37.7% I103I (ATC→ATT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,401 A→T 39.4% V105V (GTA→GTT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,404 T→C 38.7% V106V (GTT→GTC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,407 T→C 39.0% A107A (GCT→GCC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,410 G→T 39.3% A108A (GCG→GCT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,413 T→C 40.3% T109T (ACT→ACC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,419 C→T 42.1% G111G (GGC→GGT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,444 A→G 35.8% I120V (ATC→GTC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,446 C→T 40.2% I120I (ATC→ATT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,449 G→C 40.4% L121L (CTG→CTC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,454 G→C 40.0% G123A (GGT→GCT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,458 T→C 40.6% R124R (CGT→CGC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,464 A→T 42.3% V126V (GTA→GTT)  tufA → protein chain elongation factor EF‑Tu
MC JC 4,310,363 Δ1,199 bp 100% insH–[alsK] insH, [alsK]
RA 4,347,339 C→T 15.5% R251C (CGC→TGC)  melA → alpha‑galactosidase
RA 4,371,271 Δ2 bp 100% intergenic (‑6/+299) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,546,535 T→A 100% intergenic (+296/‑182) fimB → / → fimE tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA
RA 4,633,691 G→C 5.6% L504L (CTC→CTG)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,715 A→G 10.5% V496V (GTT→GTC)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,720 T→C 10.7% M495V (ATG→GTG)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,721 C→G 11.1% A494A (GCG→GCC)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,736 C→G 11.3% E489D (GAG→GAC)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,738 C→T 11.4% E489K (GAG→AAG)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,740 A→T 11.7% L488Q (CTG→CAG)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,745 G→T 11.3% A486A (GCC→GCA)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,759 C→A 11.8% A482S (GCG→TCG)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,760 G→A 11.8% R481R (CGC→CGT)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,762 G→A 11.8% R481C (CGC→TGC)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,774 T→C 11.5% I477V (ATC→GTC)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,775 A→G 11.5% D476D (GAT→GAC)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,778 C→A 11.1% L475L (CTG→CTT)  yjjK ← ABC transporter ATP‑binding protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_007779 1288307–1288375 1288526–1288459 85–220 169 [165] [166] 168 ychS hypothetical protein
* * ÷ NC_007779 2176983 2178208 1226 278 [0] [0] 311 insH insH
* * ÷ NC_007779 3128827–3130002 3147473 17472–18647 168 [164] [1] 223 [yghO]–[yghZ] 19 genes
[yghO], insH, yghQ, yghR, yghS, yghT, pitB, gss, yghU, hybG, hybF, hybE, hybD, hybC, hybB, hybA, hybO, yghW, [yghZ]
* * ÷ NC_007779 3261134–3262332 3262337 6–1204 276 [0] [0] 365 insH–[tdcD] insH, [tdcD]

Unassigned new junction evidence...
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 273179 =NA (NA)104 (0.490) 77/180 NT 45.0% coding (1109/1146 nt) ykfC hypothetical protein
?NC_007779 657877 = 127 (0.600)coding (164/210 nt) cspE DNA‑binding transcriptional repressor
* ? NC_007779 = 274373NA (NA)77 (0.360) 61/180 NT 37.2% intergenic (‑32/‑176) insH/mmuP IS5 transposase and trans‑activator/S‑methylmethionine transporter
?NC_007779 = 657880 130 (0.620)coding (167/210 nt) cspE DNA‑binding transcriptional repressor
* ? NC_007779 289856 =NA (NA)153 (1.140) 82/114 NT 100% intergenic (‑327/+17) argF/insB ornithine carbamoyltransferase 2, chain F/IS1 transposase InsAB'
?NC_007779 = 2176982 0 (0.000)intergenic (‑281/‑69) gatB/insH PTS system galactitol‑specific transporter subunit IIB/IS5 element protein
* ? NC_007779 380484 =NA (NA)210 (0.990) 120/180 NT NA intergenic (‑418/‑46) yaiO/insC hypothetical protein/IS2 insertion element repressor InsA
?NC_007779 = 381407 NA (NA)coding (510/906 nt) insD IS2 insertion element transposase InsAB'
* ? NC_007779 380484 =NA (NA)24 (0.110) 20/180 NT 11.6% intergenic (‑418/‑46) yaiO/insC hypothetical protein/IS2 insertion element repressor InsA
?NC_007779 431208 = 183 (0.870)coding (30/885 nt) tsx nucleoside channel, receptor of phage T6 and colicin K
* ? NC_007779 381401 =NA (NA)183 (0.890) 109/176 NT NA coding (504/906 nt) insD IS2 insertion element transposase InsAB'
?NC_007779 = 381812 NA (NA)coding (303/387 nt) yaiF hypothetical protein
* ? NC_007779 = 381814NA (NA)16 (0.080) 15/180 NT 8.2% coding (301/387 nt) yaiF hypothetical protein
?NC_007779 = 431212 180 (0.850)coding (26/885 nt) tsx nucleoside channel, receptor of phage T6 and colicin K
* ? NC_007779 = 608570NA (NA)199 (0.970) 110/174 NT 90.3% intergenic (+170/+112) insL/entD IS186/IS421 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
?NC_007779 1305025 = 22 (0.100)coding (413/921 nt) oppB oligopeptide transporter subunit
* ? NC_007779 1209367 =151 (0.710)50 (0.290) 46/148 NT 28.4% coding (290/630 nt) ycfK hypothetical protein
?NC_007779 1211196 = 128 (0.740)intergenic (‑500/‑66) tfaE/pin tail fiber assembly protein/site‑specific DNA recombinase
* ? NC_007779 = 1209382147 (0.700)58 (0.330) 43/148 NT 31.8% coding (305/630 nt) ycfK hypothetical protein
?NC_007779 = 1211179 128 (0.740)intergenic (‑483/‑83) tfaE/pin tail fiber assembly protein/site‑specific DNA recombinase
* ? NC_007779 1221489 =6 (0.030)195 (0.940) 106/176 NT 97.1% intergenic (+711/+2393) ymgF/ymgD hypothetical protein/hypothetical protein
?NC_007779 1301041 = NA (NA)intergenic (+219/‑89) ychE/insC inner membrane protein/IS2 element protein
* ? NC_007779 = 12214950 (0.000)182 (0.860) 112/180 NT 100% intergenic (+717/+2387) ymgF/ymgD hypothetical protein/hypothetical protein
?NC_007779 = 1302369 NA (NA)intergenic (+11/‑527) insD/oppA IS2 element protein/oligopeptide transporter subunit
* ? NC_007779 = 130503730 (0.140)201 (1.000) 113/172 NT 87.5% coding (425/921 nt) oppB oligopeptide transporter subunit
?NC_007779 2519723 = NA (NA)intergenic (+33/‑54) nupC/insL nucleoside (except guanosine) transporter/transposase
* ? NC_007779 1397758 =NA (NA)204 (0.970) 106/180 NT 99.5% intergenic (‑122/‑32) ynaI/insH inner membrane protein/IS5 transposase and trans‑activator
?NC_007779 1672777 = 1 (0.000)intergenic (+111/‑313) ynfM/asr transporter/acid shock‑inducible periplasmic protein
* ? NC_007779 = 16727801 (0.000)206 (0.980) 111/180 NT 99.5% intergenic (+114/‑310) ynfM/asr transporter/acid shock‑inducible periplasmic protein
?NC_007779 1980209 = NA (NA)intergenic (‑289/+146) flhD/insH DNA‑binding transcriptional dual regulator/IS5 element protein
* ? NC_007779 1907280 =11 (0.050)101 (0.480) 70/180 NT 90.2% intergenic (+307/‑122) yobD/yebN inner membrane protein/inner membrane protein
?NC_007779 = 2412225 NA (NA)intergenic (‑55/‑782) insA/yfbQ IS1 element protein/aminotransferase
* ? NC_007779 = 19072884 (0.020)192 (0.910) 111/180 NT 98.0% intergenic (+315/‑114) yobD/yebN inner membrane protein/inner membrane protein
?NC_007779 2411458 = NA (NA)intergenic (‑147/+15) lrhA/insB DNA‑binding transcriptional repressor/IS1 element protein
* ? NC_007779 1910343 =139 (0.660)87 (0.420) 69/178 NT 38.8% coding (138/144 nt) yobG hypothetical protein
?NC_007779 = 2412224 NA (NA)intergenic (‑54/‑783) insA/yfbQ IS1 element protein/aminotransferase
* ? NC_007779 1980091 =0 (0.000)175 (0.830) 99/180 NT 100% intergenic (‑171/+264) flhD/insH DNA‑binding transcriptional dual regulator/IS5 element protein
?NC_007779 1980209 = NA (NA)intergenic (‑289/+146) flhD/insH DNA‑binding transcriptional dual regulator/IS5 element protein
* ? NC_007779 = 19800950 (0.000)234 (1.120) 124/178 NT 100% intergenic (‑175/+260) flhD/insH DNA‑binding transcriptional dual regulator/IS5 element protein
?NC_007779 2176984 = NA (NA)intergenic (‑283/‑67) gatB/insH PTS system galactitol‑specific transporter subunit IIB/IS5 element protein
* ? NC_007779 2178209 =0 (0.000)222 (1.050) 128/180 NT 100% intergenic (+178/+184) insH/gatZ IS5 element protein/D‑tagatose 1,6‑bisphosphate aldolase 2, subunit
?NC_007779 = 2412225 NA (NA)intergenic (‑55/‑782) insA/yfbQ IS1 element protein/aminotransferase
* ? NC_007779 2320794 =NA (NA)173 (0.820) 102/180 NT 100% intergenic (+633/+11) rcsB/insD DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/IS2 element protein
?NC_007779 = 2589834 0 (0.000)intergenic (+470/‑69) acrD/yffB aminoglycoside/multidrug efflux system/hypothetical protein
* ? NC_007779 = 2322124NA (NA)233 (1.100) 131/180 NT 100% intergenic (‑91/‑2589) insC/atoS IS2 element protein/sensory histidine kinase in two‑component regulatory system with AtoC
?NC_007779 2589830 = 0 (0.000)intergenic (+466/‑73) acrD/yffB aminoglycoside/multidrug efflux system/hypothetical protein
* ? NC_007779 2411458 =NA (NA)259 (1.230) 141/180 NT 97.7% intergenic (‑147/+15) lrhA/insB DNA‑binding transcriptional repressor/IS1 element protein
?NC_007779 = 2985055 6 (0.030)coding (553/1230 nt) yqeG transporter
* ? NC_007779 = 2412225NA (NA)6 (0.030) 6/180 NT 2.7% intergenic (‑55/‑782) insA/yfbQ IS1 element protein/aminotransferase
?NC_007779 2426145 = 218 (1.030)coding (79/648 nt) yfcG glutathione S‑transferase
* ? NC_007779 = 2412225NA (NA)190 (0.900) 100/180 NT 93.1% intergenic (‑55/‑782) insA/yfbQ IS1 element protein/aminotransferase
?NC_007779 2985047 = 14 (0.070)coding (545/1230 nt) yqeG transporter
* ? NC_007779 2519722 =NA (NA)20 (0.100) 20/176 NT 14.2% intergenic (+32/‑55) nupC/insL nucleoside (except guanosine) transporter/transposase
?NC_007779 = 3175166 124 (0.590)coding (324/828 nt) cpdA cyclic 3',5'‑adenosine monophosphate phosphodiesterase
* ? NC_007779 2519723 =NA (NA)52 (0.260) 43/172 NT 30.3% intergenic (+33/‑54) nupC/insL nucleoside (except guanosine) transporter/transposase
?NC_007779 3175156 = 125 (0.590)coding (334/828 nt) cpdA cyclic 3',5'‑adenosine monophosphate phosphodiesterase
* ? NC_007779 = 2521057NA (NA)41 (0.200) 32/174 NT 26.0% intergenic (+168/+32) insL/yfeA transposase/diguanylate cyclase
?NC_007779 = 3175170 121 (0.570)coding (320/828 nt) cpdA cyclic 3',5'‑adenosine monophosphate phosphodiesterase
* ? NC_007779 = 2521059NA (NA)12 (0.060) 11/172 NT 9.1% intergenic (+170/+30) insL/yfeA transposase/diguanylate cyclase
?NC_007779 3175156 = 125 (0.590)coding (334/828 nt) cpdA cyclic 3',5'‑adenosine monophosphate phosphodiesterase
* ? NC_007779 3147474 =1 (0.000)203 (0.960) 112/180 NT 99.5% coding (922/1041 nt) yghZ aldo‑keto reductase
?NC_007779 = 3262328 NA (NA)coding (1188/1296 nt) tdcD propionate kinase/acetate kinase C, anaerobic
* ? NC_007779 = 3186081NA (NA)108 (0.520) 75/178 NT 60.3% coding (26/2466 nt) yqiG outer membrane usher protein
?NC_007779 3512753 = 72 (0.340)coding (529/1026 nt) cytR DNA‑binding transcriptional dual regulator
* ? NC_007779 = 32611330 (0.000)246 (1.250) 129/168 NT 100% intergenic (‑59/‑69) tdcE/insH pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein
?NC_007779 = 3748109 NA (NA)intergenic (+150/+962) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
* ? NC_007779 3261134 =NA (NA)186 (0.880) 110/180 NT 100% intergenic (‑60/‑68) tdcE/insH pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein
?NC_007779 3265774 = 0 (0.000)coding (110/990 nt) tdcB catabolic threonine dehydratase, PLP‑dependent
* ? NC_007779 3261135 =NA (NA)236 (1.130) 125/178 NT 100% intergenic (‑61/‑67) tdcE/insH pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein
?NC_007779 3262338 = 0 (0.000)coding (1178/1296 nt) tdcD propionate kinase/acetate kinase C, anaerobic
* ? NC_007779 = 32657770 (0.000)243 (1.150) 132/180 NT 100% coding (107/990 nt) tdcB catabolic threonine dehydratase, PLP‑dependent
?NC_007779 3365411 = NA (NA)intergenic (+368/+146) yhcD/insH outer membrane protein/IS5 transposase and trans‑activator
* ? NC_007779 = 351275967 (0.320)116 (0.560) 81/178 NT 63.6% coding (535/1026 nt) cytR DNA‑binding transcriptional dual regulator
?NC_007779 = 3744262 NA (NA)intergenic (‑90/+31) insC/yidZ IS2 element protein/DNA‑binding transcriptional regulator
* ? NC_007779 = 3744263NA (NA)202 (0.960) 108/180 NT 100% intergenic (‑91/+30) insC/yidZ IS2 element protein/DNA‑binding transcriptional regulator
?NC_007779 3903274 = 0 (0.000)coding (37/825 nt) bax hypothetical protein
* ? NC_007779 3746911 =NA (NA)230 (1.090) 129/180 NT 99.6% intergenic (‑509/‑68) mdtL/insH multidrug efflux system protein/IS5 element protein
?NC_007779 = 3748646 1 (0.000)intergenic (+687/+425) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
* ? NC_007779 = 3748105NA (NA)235 (1.110) 133/180 NT 99.6% intergenic (+146/+966) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
?NC_007779 3748643 = 1 (0.000)intergenic (+684/+428) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
* ? NC_007779 = 39032791 (0.000)207 (0.990) 117/178 NT 99.5% coding (42/825 nt) bax hypothetical protein
?NC_007779 = 4504190 NA (NA)intergenic (+10/‑89) insD/yjgW IS2 insertion element transposase InsAB'/hypothetical protein
* ? NC_007779 3987186 =NA (NA)161 (0.770) 98/178 NT 99.4% intergenic (‑732/‑31) slp/insH outer membrane lipoprotein/IS5 transposase and trans‑activator
?NC_007779 = 4009203 1 (0.000)coding (1379/1623 nt) yhiJ hypothetical protein
* ? NC_007779 = 3988379NA (NA)198 (0.940) 107/180 NT 99.5% coding (746/783 nt) yhiS hypothetical protein
?NC_007779 4009199 = 1 (0.000)coding (1375/1623 nt) yhiJ hypothetical protein
* ? NC_007779 4310363 =NA (NA)248 (1.170) 123/180 NT 100% intergenic (‑287/‑68) yjcS/insH alkyl sulfatase/IS5 element protein
?NC_007779 4353540 = 0 (0.000)intergenic (‑118/+453) dcuB/dcuR C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS
* ? NC_007779 = 4311557NA (NA)200 (0.950) 111/180 NT 100% coding (921/1029 nt) alsK D‑allose kinase
?NC_007779 = 4353543 0 (0.000)intergenic (‑121/+450) dcuB/dcuR C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS
* ? NC_007779 4355060 =3 (0.010)219 (1.040) 131/180 NT 98.6% coding (1281/1632 nt) dcuS sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration
?NC_007779 4502861 = NA (NA)intergenic (+241/‑46) intB/insC integrase/IS2 insertion element repressor InsA
* ? NC_007779 = 43550664 (0.020)205 (0.990) 111/176 NT 98.1% coding (1275/1632 nt) dcuS sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration
?NC_007779 = 4504189 NA (NA)intergenic (+9/‑90) insD/yjgW IS2 insertion element transposase InsAB'/hypothetical protein
* ? NC_007779 = 4547370181 (0.860)3 (0.020) 3/162 NT 1.8% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin
?NC_007779 = 4547666 170 (0.890)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin