| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 3,627,544 | 1 | .→T | 0.7% | 2.4 ‑0.7 ‑0.1 | 280 | intergenic (‑33/‑78) | pldB/rhtB | lysophospholipase L(2)/neutral amino‑acid efflux system |
| Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
| Rejected: Polymorphic indel expands or contracts a homopolymer stretch. | ||||||||||
| Reads supporting (aligned to +/- strand): new base (2/0): ref base (151/127): total (153/127) | ||||||||||
| Fisher's exact test strand distribution p-value = 5.03e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.46e-01 | ||||||||||
Only 100 of 301 total aligned reads displayed.
AGCGGTCCCATGGTAAAAGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGAATGGTGGTTTGC > NC_007779/3627444‑3627644 agCGGTCCCATGGTAAAAGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCg < 1:7220539/101‑1 (MQ=255) cGGTCCCATGGTAAAAGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGtt < 1:8901066/101‑1 (MQ=255) cATGGTAAAAGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGtttttttt > 1:3998412/1‑101 (MQ=255) aTGGTAAAAGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTa > 1:314461/1‑101 (MQ=255) aTGGTAAAAGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTa > 1:5201797/1‑101 (MQ=255) tGGTAAAAGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAg < 1:8492957/101‑1 (MQ=255) tGGTAAAAGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAg > 1:5077939/1‑101 (MQ=255) tAAAAGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGt > 1:7752473/1‑101 (MQ=255) aaaGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGc > 1:8341239/1‑101 (MQ=255) agcagcAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCt < 1:5285315/101‑1 (MQ=255) cagcaAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGa > 1:1844874/1‑101 (MQ=255) cagcaAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGa > 1:7636735/1‑101 (MQ=255) cagcaAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGa > 1:7682882/1‑101 (MQ=255) agcaAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGac > 1:8534880/1‑101 (MQ=255) caAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGacac < 1:3401415/101‑1 (MQ=255) caAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGacac > 1:4282353/1‑101 (MQ=255) aaaCGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGAcaca > 1:9034707/1‑101 (MQ=255) aCGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAAc < 1:1565787/101‑1 (MQ=255) aCGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAAc > 1:4307490/1‑101 (MQ=255) cgTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCt > 1:2705546/1‑101 (MQ=255) cgTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCt < 1:11277482/101‑1 (MQ=255) gTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTg < 1:617062/101‑1 (MQ=255) gTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTg > 1:10573658/1‑101 (MQ=255) gTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTg < 1:10417453/101‑1 (MQ=255) ttttCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGc > 1:11592868/1‑101 (MQ=255) tttCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACACCGCTGCg > 1:2331875/1‑101 (MQ=255) ctctTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACa > 1:5720142/1‑101 (MQ=255) tGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAg > 1:4466232/1‑101 (MQ=255) gTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGTCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGc < 1:4768935/101‑1 (MQ=255) gTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGc < 1:5505950/101‑1 (MQ=255) gTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGc > 1:3188294/1‑101 (MQ=255) gTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGc < 1:9348601/101‑1 (MQ=255) ttCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGt > 1:4665740/1‑101 (MQ=255) ttCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGt < 1:5130719/101‑1 (MQ=255) cccAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTAt > 1:7244468/1‑101 (MQ=255) cccAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTAt > 1:1449934/1‑101 (MQ=255) cccAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTAt < 1:11411477/101‑1 (MQ=255) cAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATtg > 1:5523406/1‑101 (MQ=255) aGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATtgt < 1:7474724/101‑1 (MQ=255) aGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATtgt > 1:11843900/1‑101 (MQ=255) aGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATtgt < 1:12070821/101‑1 (MQ=255) aGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATtgt > 1:969747/1‑101 (MQ=255) gTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATtgtg > 1:5656324/1‑101 (MQ=255) gTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCGCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATtgtg < 1:5409626/101‑1 (MQ=255) tttttGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGca < 1:1616858/101‑1 (MQ=255) tttttGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCG‑‑TTTTTTATCGTGCCTGACACAACGCTGCGACAGAAGAGCATTGTGGcaca > 1:1023235/1‑101 (MQ=255) tttGCGGCGAAACCATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGcaca < 1:11141203/101‑1 (MQ=255) ttGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTGTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACaa > 1:8657859/1‑101 (MQ=255) tgctgcTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACaaa > 1:7077387/1‑101 (MQ=255) tgctgcTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACaaa < 1:2130088/101‑1 (MQ=255) gctgctGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACaaaa > 1:10297025/1‑101 (MQ=255) ctgctgAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACaaaaa > 1:656902/1‑101 (MQ=255) ctgctgAAACATCGGCTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACaaaaa < 1:8217887/101‑1 (MQ=255) tgctgAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAAt < 1:4846159/101‑1 (MQ=255) tgctgAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAAt < 1:1667781/101‑1 (MQ=255) gctgAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATa > 1:3620081/1‑101 (MQ=255) ctgAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAg < 1:9169252/101‑1 (MQ=255) ctgAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAg < 1:1163166/101‑1 (MQ=255) tgAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGa < 1:10648048/101‑1 (MQ=255) tgAAACATCGGGCAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGa > 1:331946/1‑101 (MQ=255) aaCATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGacac > 1:9513433/1‑101 (MQ=255) cATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGacacac < 1:2548614/101‑1 (MQ=255) aTCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACAcc > 1:5911310/1‑101 (MQ=255) aTCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACAcc < 1:1295108/101‑1 (MQ=255) cGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCgg < 1:4168564/101‑1 (MQ=255) gggTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCggg > 1:10688197/1‑101 (MQ=255) gggTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCggg > 1:10810204/1‑101 (MQ=255) gggTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCggg > 1:375583/1‑101 (MQ=255) gTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAg > 1:8424548/1‑101 (MQ=255) aaTCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGtt < 1:2076036/101‑1 (MQ=255) aTCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTtc > 1:11756593/1‑101 (MQ=255) aTCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTtc > 1:9782358/1‑101 (MQ=255) tGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTtcatc > 1:8781834/1‑101 (MQ=255) tGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTtcatc > 1:3238333/1‑101 (MQ=255) tctTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGa > 1:6427738/1‑101 (MQ=255) tctTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGa > 1:7866497/1‑101 (MQ=255) ttAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGAcc > 1:4534196/1‑101 (MQ=255) ttAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGAcc > 1:11003210/1‑101 (MQ=255) ttAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGAcc > 1:8068303/1‑101 (MQ=255) tAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGCAGCGTATTGTGGCACAAAAATAAACACACCGGGAGTTCATCATGACCt > 1:8312337/1‑101 (MQ=255) aaaCCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCtt < 1:10079132/101‑1 (MQ=255) aaaCCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCtt > 1:5774619/1‑101 (MQ=255) aaaCCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCtt > 1:4925942/1‑101 (MQ=255) aaaCCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCtt > 1:2014472/1‑101 (MQ=255) aaaCCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCtt > 1:237217/1‑101 (MQ=255) aaaCCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGAAGCGTATTGTGGCACAAAAATAGACACACCGAGAGTTCATCATGACCtt < 1:6258828/101‑1 (MQ=255) aaCCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTa > 1:943363/1‑101 (MQ=255) ccACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGa > 1:7346874/1‑101 (MQ=255) ccACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGa > 1:4703469/1‑101 (MQ=255) aCGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGAAt > 1:9836878/1‑101 (MQ=255) gTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGAAtgg < 1:3580936/101‑1 (MQ=255) tAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGGACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGAAtggt < 1:960882/101‑1 (MQ=255) tAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGAAtggt > 1:8756415/1‑101 (MQ=255) tAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGAAtggt > 1:10791794/1‑101 (MQ=255) aaaaTCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGAAtggtg > 1:2234932/1‑101 (MQ=255) aaaTCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGAAtggtgg > 1:2856246/1‑101 (MQ=255) aTCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGAATGGTGGtt < 1:9257310/101‑1 (MQ=255) tCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGAATGGTGGttt < 1:6837503/101‑1 (MQ=255) cGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGAATGGTGGTTTg < 1:2961185/101‑1 (MQ=255) cGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGAATGGTGGTTTg < 1:6947549/101‑1 (MQ=255) AGCGGTCCCATGGTAAAAGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCACAAAAATAGACACACCGGGAGTTCATCATGACCTTAGAATGGTGGTTTGC > NC_007779/3627444‑3627644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |