Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0077793,900,6761.→G 0.8% 2.4 ‑1.8 ‑0.0259coding (35/1254 nt)avtAvaline‑pyruvate aminotransferase
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands.
Rejected: Polymorphic indel expands or contracts a homopolymer stretch.
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (105/152):  total (107/152)
Fisher's exact test strand distribution p-value = 1.70e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.71e-01

Only 100 of 281 total aligned reads displayed.

TTCCGGGATCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAA  >  NC_007779/3900576‑3900776
                                                                                                     |                                                                                                    
 tCCGGGATCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑g                                                                                                     <  1:3713951/101‑1 (MQ=255)
  ccGGGATCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑gg                                                                                                    <  1:7286437/101‑1 (MQ=255)
    gggATCTGCGCCGGATTGCCGCCGCCGAGCATAATCTCGCCAGGGGTGCGTAAACCGTCGTTTAGATCTTTCATCAACAGCGTAATGCCGGAGTGGC‑GGGt                                                                                                  <  1:7780176/101‑1 (MQ=255)
    gggATCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑gggg                                                                                                  >  1:3165777/1‑100 (MQ=255)
    gggATCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGt                                                                                                  <  1:5271298/101‑1 (MQ=255)
     ggATCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTa                                                                                                 <  1:5633120/101‑1 (MQ=255)
      gATCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTaa                                                                                                <  1:6388815/101‑1 (MQ=255)
      gATCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTaa                                                                                                <  1:1896526/101‑1 (MQ=255)
      gATCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTaa                                                                                                <  1:6697901/101‑1 (MQ=255)
       aTCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑gggggaa                                                                                               >  1:3576008/1‑97 (MQ=255)
       aTCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑gggggaa                                                                                               >  1:10716188/1‑97 (MQ=255)
       aTCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGaaa                                                                                               >  1:11871395/1‑101 (MQ=255)
        tCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAAt                                                                                              <  1:7626604/101‑1 (MQ=255)
        tCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAAt                                                                                              <  1:9262469/101‑1 (MQ=255)
         cTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGaaaat                                                                                             >  1:4097077/1‑99 (MQ=255)
            cgcCGGGTCCCCGGCGCCGAGCATAAGCCCGCCGGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGt                                                                                          <  1:6485538/101‑1 (MQ=255)
                ggATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGAAATTTTTCAcc                                                                                      >  1:2976641/1‑101 (MQ=255)
                 gATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCa                                                                                     <  1:9877816/101‑1 (MQ=255)
                 gATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGGAAATTGtataca                                                                                     >  1:612892/1‑96 (MQ=255)
                  aTTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGGAAATTGTTAccca                                                                                    >  1:2103409/1‑99 (MQ=255)
                   ttACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCaaa                                                                                   <  1:904377/101‑1 (MQ=255)
                    tACCGCGGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGAGGAAATTGTTACCaaaa                                                                                  >  1:8501592/1‑101 (MQ=255)
                     aCCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTGAATATGTTAACcaaaa                                                                                 >  1:2148780/1‑101 (MQ=255)
                     aCCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGAAAATTGTCGCCaaaaa                                                                                 >  1:11041436/1‑101 (MQ=255)
                       cgccgccgAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAgg                                                                               <  1:9588551/101‑1 (MQ=255)
                       cgccgccgAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAgg                                                                               <  1:1256407/101‑1 (MQ=255)
                       cgccgccgAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGGAAATTGTTAACaaaaaaa                                                                               >  1:8231139/1‑99 (MQ=255)
                        gccgccgAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAggg                                                                              <  1:8350399/101‑1 (MQ=255)
                        gccgccgAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAggg                                                                              <  1:10918591/101‑1 (MQ=255)
                         ccgccgAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGga                                                                             <  1:7040351/101‑1 (MQ=255)
                          cgccgAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAAATTGTCACCAAAAAGGgag                                                                            >  1:12004653/1‑101 (MQ=255)
                          cgccgAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGAAAATTTTTACCaaaaaaagag                                                                            >  1:10138936/1‑96 (MQ=255)
                           gccgAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGGAATTTTTCTCCAAAAAAGgaga                                                                           >  1:4712630/1‑101 (MQ=255)
                           gccgAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGGAAATTTTCACCAAAAAAGggga                                                                           >  1:11316896/1‑101 (MQ=255)
                             cgAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAAt                                                                         <  1:11376685/101‑1 (MQ=255)
                             cgAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAAt                                                                         <  1:1432105/101‑1 (MQ=255)
                             cgAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGGAATTTTTCACCAAAAAAGGGGAAt                                                                         >  1:3625030/1‑101 (MQ=255)
                              gAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATg                                                                        <  1:295070/101‑1 (MQ=255)
                              gAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATg                                                                        <  1:4628161/101‑1 (MQ=255)
                              gAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGAAAATTTTCACCCAAAAAGGAGGATg                                                                        >  1:688455/1‑101 (MQ=255)
                                 cATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCa                                                                     <  1:2723830/101‑1 (MQ=255)
                                 cATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCa                                                                     <  1:7549243/101‑1 (MQ=255)
                                  aTAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCAt                                                                    <  1:11170200/101‑1 (MQ=255)
                                    aaTCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAg                                                                  <  1:7114513/101‑1 (MQ=255)
                                    aaTCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAg                                                                  <  1:1017763/101‑1 (MQ=255)
                                    aaTCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGGAAATTTTCACCAAAAAAGGGGGAAGTCATaa                                                                  >  1:4466924/1‑100 (MQ=255)
                                     aTCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGc                                                                 <  1:7430105/101‑1 (MQ=255)
                                      tCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCg                                                                <  1:7163014/101‑1 (MQ=255)
                                      tCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCg                                                                <  1:5154454/101‑1 (MQ=255)
                                         cgcCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAAATTGTCACCCAAAAAGGAGAAAGGCATAGCGGGa                                                             >  1:5848576/1‑101 (MQ=255)
                                          gcCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGAAATTTTTTAACCAAAAAGGAGAAAGTCATAGCGGGat                                                            >  1:11839449/1‑101 (MQ=255)
                                          gcCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGAAATTTTTCACCAAAAAGGGAGAATGTCATAACGGGat                                                            >  1:1552247/1‑101 (MQ=255)
                                          gcCAGGCGTGCGTAAACCGTCGTTCAGATCCTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGAAATTTTTCACCAAAAAAGGAGAAAGTCATAGCgggga                                                            >  1:11904752/1‑99 (MQ=255)
                                           ccAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGata                                                           <  1:10445067/101‑1 (MQ=255)
                                             aGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGGAATTTTTCACCCAAAAAGGAGAAAGTCATAACGGGGTATc                                                         >  1:9742693/1‑101 (MQ=255)
                                               gcgtgcgtAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGCGGGGGAAATTTTTACCCAAAAAGGG‑GAATGTGATAGAGGGGGATCtt                                                       >  1:4564086/1‑100 (MQ=255)
                                               gcgtgcgtAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGAAATTTTTTACCAAAAAAGGAGAATGGCATAAAGGGGTATCtt                                                       >  1:5716062/1‑100 (MQ=255)
                                                cgtgcgtAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGGAATTTTTTACCAAAAAAGGGGAAAGTCATAACGGGGTATCttt                                                      >  1:2654072/1‑99 (MQ=255)
                                                cgtgcgtAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGAAAATTTTTACCAAAAAAGGAGAATGTCATAGCGGGATATCTGt                                                      >  1:6994982/1‑101 (MQ=255)
                                                  tgcgtAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCg                                                    <  1:656754/101‑1 (MQ=255)
                                                  tgcgtAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGAAAATTGTTACCAAAAAAGGGGGATGGCATAGCGGGGTGTCTGTCg                                                    >  1:7121527/1‑101 (MQ=255)
                                                    cgtAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGaa                                                  <  1:1302488/101‑1 (MQ=255)
                                                    cgtAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGaa                                                  <  1:10331632/101‑1 (MQ=255)
                                                     gtAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAAc                                                 <  1:2671138/101‑1 (MQ=255)
                                                      tAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGaaat                                                <  1:4387127/101‑3 (MQ=255)
                                                       aaaCCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGCAAATTTTTACCAAAAAAGGGGGAGGTTATAGCGGGGTCTTTGTCggaatt                                               >  1:3899670/1‑96 (MQ=255)
                                                        aaCCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAActct                                              <  1:9164955/101‑1 (MQ=255)
                                                             tcgtTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGc                                         <  1:2855457/101‑1 (MQ=255)
                                                              cgtTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCa                                        <  1:4024326/101‑1 (MQ=255)
                                                                ttCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCaag                                      <  1:1345467/101‑1 (MQ=255)
                                                                   aGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCaaggaa                                   <  1:5455200/101‑1 (MQ=255)
                                                                   aGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCaaggaa                                   <  1:5777769/101‑1 (MQ=255)
                                                                   aGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGAAAATTTTCAACAAAAAGGGAGAAAGTTATAGCTGGGGATCTGTCGCAATCTTTAGCaagaaa                                   >  1:3112639/1‑101 (MQ=255)
                                                                     aTCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGGGAAATTTTTACCAAAAAGGGAGAATATAAAAACGGGAGATCTGTCGCACTCTGTCACaaagaagg                                 >  1:240355/1‑101 (MQ=255)
                                                                      tCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGt                                <  1:9633117/101‑1 (MQ=255)
                                                                      tCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGt                                <  1:626806/101‑1 (MQ=255)
                                                                       cTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTa                               <  1:3362533/101‑1 (MQ=255)
                                                                       cTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTa                               <  1:4916842/101‑1 (MQ=255)
                                                                         tCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAAc                             <  1:4726668/101‑1 (MQ=255)
                                                                          ccATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACa                            <  1:10032122/101‑1 (MQ=255)
                                                                          ccATCAACAGCGTAATGCCGGAGTGGC‑GGGGAAAATTTTCTCCCAAAAAGGGGAAAGTCATAACGGGGGATATTTCGAACTCTGTAGCCAGGAAGGGAACa                            >  1:8964051/1‑101 (MQ=255)
                                                                          ccATCAACAGCGTAATGCCGGAGTGGC‑GGGGAAAATTTTCACCCAAAAGGGGGAAAGTCATAGCGGGGTATCTGTCGAACTCTGTAGCAAGGAAGGGAACa                            >  1:7453336/1‑101 (MQ=255)
                                                                              cAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATaa                        <  1:4286782/101‑1 (MQ=255)
                                                                              cAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATaa                        <  1:6071559/101‑1 (MQ=255)
                                                                               aaCAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATAAc                       <  1:3633183/101‑1 (MQ=255)
                                                                               aaCAGCGTAATGCCGGAGTGGC‑GGGGAAATTTGTCACCCAAAAAGGGGAATGTCATAGCGGGGGATCTGTCGGAATCTGTAGGAAGGAAGGGAAAAATAAc                       >  1:1085013/1‑101 (MQ=255)
                                                                               aaCAGCGTAATGCCGGAGTGGC‑GGGGAAAATTTTCACCCAAAAAGGAGAAAGTCATAGCGGGGTATCTTTCGAACTCTGTAGCAAGGAAGGGAAAAATaaa                       >  1:2228458/1‑100 (MQ=255)
                                                                               aaCAGCGTAATGCCGGAGTGGC‑GGGGAAAATTGTTTCCCAAAAAGGAGAAAGGCATAGCGGGGGATGTTTTGGACTCTGTATGAAGGAAGGGAAAAATaaa                       >  1:8687256/1‑100 (MQ=255)
                                                                                aCAGCGTAATGCCGGAGTGGC‑GGGGAAATTTTTTACCAAAAAAGGAGAATGTGATAACGGGATATCTGTTGGACACTGTAGCCAAGAAGGGAAAAAAaaaa                      >  1:250732/1‑99 (MQ=255)
                                                                                      tAATGCCGGAGTGGC‑GGGGAAATTTTTCACCAAAAAAGGAGAAAGTCATAGCGGGGTATCTGTCGAACTCTGTAGCAAGGAAGGGAAAAATAACGCCACAt                >  1:10492188/1‑101 (MQ=255)
                                                                                        aTGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATTACGCTACAttt              <  1:8007499/101‑1 (MQ=255)
                                                                                        aTGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACAttt              <  1:8951466/101‑1 (MQ=255)
                                                                                         tGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTg             <  1:9432753/101‑1 (MQ=255)
                                                                                         tGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTg             <  1:2753637/101‑1 (MQ=255)
                                                                                         tGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTg             <  1:47653/101‑1 (MQ=255)
                                                                                             ggAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTgg         <  1:11726084/101‑1 (MQ=255)
                                                                                             ggAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTgg         <  1:11668839/101‑1 (MQ=255)
                                                                                                  ggC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGc    <  1:8168877/101‑1 (MQ=255)
                                                                                                  ggC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGc    >  1:8620253/1‑101 (MQ=255)
                                                                                                    c‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCaa  <  1:1849463/101‑1 (MQ=255)
                                                                                                     |                                                                                                    
TTCCGGGATCTGCGCCGGATTACCGCCGCCGAGCATAATCGCGCCAGGCGTGCGTAAACCGTCGTTCAGATCTTCCATCAACAGCGTAATGCCGGAGTGGC‑GGGTAAATTTGTCACCAAAAAGGGAGAATGTCATAGCGGGATATCTGTCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAA  >  NC_007779/3900576‑3900776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.