New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 2412225	NA (NA)	17 (0.040)	16/180	NT	3.5%	intergenic (‑55/‑782)	insA/yfbQ	IS1 element protein/aminotransferase
	?	NC_007779	= 2941518	469 (1.080)					intergenic (‑295/+56)	gcvA/ygdI	DNA‑binding transcriptional dual regulator/hypothetical protein

GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/2412142‑2412225 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGCTTTGCTACCATGGTCTGAATCGCAGACCAATTGCAAACACAACAACA  <  NC_007779/2941518‑2941427                                                                                                                                                                                  GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCTGTAAGTTGGCAGCATCACCCTATGGACAGACAGGGT                                                                             <  1:16248943/101‑1        AGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTTGCAGCATCACCCTATGGACAGACAGGGTAAATGTA                                                                      >  1:11443095/1‑101               AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAG                                                               >  1:17149501/1‑101                 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTG                                                             >  1:21036505/1‑101                       AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAA                                                       >  1:13837623/1‑101                             CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGC                                                 >  1:11169373/1‑101                               GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGCTT                                               <  1:21749497/101‑1                                   CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGCTTTGCT                                           >  1:17566788/1‑101                                                   TCATACACTAAATCAGTAAGTTGGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGCTTTGCTACCATGGTCTGAATCG                           <  1:5594692/101‑1                                                     ATACACTAAATCAGTAAGTTGGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGCTTTGCTACCATGGTCTGAATCGCA                         >  1:20691219/1‑101                                                      TACACTAAATCAGTAAGTTGGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGCTTTGCTACCATGGTCTGAATCGCAG                        >  1:7065857/1‑101                                                            AAATCAGTAAGTTAGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGCTTTGCTACCATGGTCTGAATCGCAGACCAAT                  <  1:14365357/101‑1                                                             AATCAGTAAGTTGGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGCTTTGCTACCATGGTCTGAATCGCAGACCAATT                 <  1:8418808/101‑1                                                              ATCAGTAAGTTGGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGCTTTGCTACCATGGTCTGAATCGCAGACCAATTG                <  1:17250318/101‑1                                                                     AGTTGGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGCTTTGCTACCATGGTCTGAATCGCAGACCAATTGCAAACAC         >  1:14603633/1‑101                                                                     AGTTGGCAGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGCTTTGCTACCATGGTCTGAATCGCAGACCAATTGCAAACAC         >  1:1637802/1‑101                                                                            AGCATCACCCTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGCTTTGCTACCATGGTCTGAATCGCAGACCAATTGCAAACACAACAACA  >  1:12952742/1‑101                                                                                                                                                                                  GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/2412142‑2412225 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTATGGACAGACAGGGTAAATGTACAGGAAGTGAAAAAAGGTAGCTTTGCTACCATGGTCTGAATCGCAGACCAATTGCAAACACAACAACA  <  NC_007779/2941518‑2941427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.