New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 4310363 =NA (NA)471 (1.080) 155/180 NT 100% intergenic (‑287/‑68) yjcS/insH alkyl sulfatase/IS5 element protein
?NC_007779 4353540 = 0 (0.000)intergenic (‑118/+453) dcuB/dcuR C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS

ATGGGGCTTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTC  >  NC_007779/4310351‑4310451
            |                                                                                        
tcattcatttAGGGAAGGTGCGAACAACTCCCTCATTTGCCATCATGTTTGTCATCTTGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTc  <  1:7983205/94‑1 (MQ=11)
            |                                                                                        
ATGGGGCTTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTC  >  NC_007779/4310351‑4310451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.