New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 = 2411458339 (1.070)3 (0.010) 3/162 NT 0.98% intergenic (‑147/+15) lrhA/insB DNA‑binding transcriptional repressor/IS1 element protein
?NC_007779 2412235 = 300 (1.060)intergenic (‑65/‑772) insA/yfbQ IS1 element protein/aminotransferase

Only 100 of 419 total aligned reads displayed.

CACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTC  >  NC_007779/2411358‑2411558
                                                                                                    |                                                                                                    
  cacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGt                                                                                                    <  1:8513246/101‑1 (MQ=255)
  cacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGt                                                                                                    <  1:109992/101‑1 (MQ=255)
     acaaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAAt                                                                                                 >  1:5898031/1‑101 (MQ=255)
     acaaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAAt                                                                                                 <  1:6472447/101‑1 (MQ=255)
      caaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATg                                                                                                <  1:13695730/101‑1 (MQ=255)
       aaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGa                                                                                               >  1:5141156/1‑101 (MQ=255)
        aacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCAGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGAc                                                                                              <  1:13182762/101‑1 (MQ=255)
          caaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTc                                                                                            >  1:12481474/1‑101 (MQ=255)
            aGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGCAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGAAATGACTCCa                                                                                          >  1:7509060/1‑101 (MQ=255)
            aGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCa                                                                                          >  1:3286347/1‑101 (MQ=255)
            aGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCa                                                                                          >  1:5311344/1‑101 (MQ=255)
            aGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCa                                                                                          <  1:9799399/101‑1 (MQ=255)
             gCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCaa                                                                                         <  1:14896229/101‑1 (MQ=255)
             gCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCaa                                                                                         >  1:5762782/1‑101 (MQ=255)
              cAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAAc                                                                                        <  1:2373896/101‑1 (MQ=255)
               aaTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACt                                                                                       <  1:4861553/101‑1 (MQ=255)
                aTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACtt                                                                                      >  1:9433451/1‑101 (MQ=255)
                aTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACtt                                                                                      >  1:4443998/1‑101 (MQ=255)
                aTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACtt                                                                                      <  1:921495/101‑1 (MQ=255)
                aTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACtt                                                                                      <  1:12042535/101‑1 (MQ=255)
                 ttCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTa                                                                                     <  1:13590164/101‑1 (MQ=255)
                 ttCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTa                                                                                     <  1:6866782/101‑1 (MQ=255)
                   ccATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTAtt                                                                                   <  1:15309528/101‑1 (MQ=255)
                    cATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTg                                                                                  >  1:15592057/1‑101 (MQ=255)
                    cATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTg                                                                                  >  1:7224437/1‑101 (MQ=255)
                     aTTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGa                                                                                 <  1:5069733/101‑1 (MQ=255)
                       ttGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATa                                                                               >  1:10267645/1‑101 (MQ=255)
                        tGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAg                                                                              <  1:10835363/101‑1 (MQ=255)
                        tGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAg                                                                              >  1:2678731/1‑101 (MQ=255)
                          tAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAgtg                                                                            >  1:11181749/1‑101 (MQ=255)
                            aTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGtt                                                                          <  1:10027092/101‑1 (MQ=255)
                            aTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGtt                                                                          >  1:1141209/1‑101 (MQ=255)
                            aTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGtt                                                                          <  1:1337086/101‑1 (MQ=255)
                              gtgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGtttt                                                                        >  1:15173928/1‑101 (MQ=255)
                                  cTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCACATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt                                                                    >  1:5587642/1‑101 (MQ=255)
                                   tCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                                   <  1:3927798/101‑1 (MQ=255)
                                    cccTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                                  <  1:8162946/101‑1 (MQ=255)
                                     ccTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                                                                 >  1:6785008/1‑101 (MQ=255)
                                      cTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAg                                                                <  1:6160369/101‑1 (MQ=255)
                                       tGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa                                                               <  1:11278946/101‑1 (MQ=255)
                                             tttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc                                                         <  1:3031082/101‑1 (MQ=255)
                                                 aTCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGa                                                     <  1:14777445/101‑1 (MQ=255)
                                                 aTCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGa                                                     <  1:6983753/101‑1 (MQ=255)
                                                  tCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                                    <  1:12211654/101‑1 (MQ=255)
                                                  tCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                                    >  1:15811121/1‑101 (MQ=255)
                                                   ccGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATg                                                   <  1:2326345/101‑1 (MQ=255)
                                                      gAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt                                                <  1:7902152/101‑1 (MQ=255)
                                                       aaCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACtt                                               <  1:15102282/101‑1 (MQ=255)
                                                        aCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt                                              <  1:9733146/101‑1 (MQ=255)
                                                        aCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt                                              <  1:7356197/101‑1 (MQ=255)
                                                          ccGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt                                            >  1:824068/1‑101 (MQ=255)
                                                          ccGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt                                            <  1:15479453/101‑1 (MQ=255)
                                                           cGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTc                                           <  1:3845762/101‑1 (MQ=255)
                                                           cGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTc                                           <  1:9596070/101‑1 (MQ=255)
                                                             gACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                                         <  1:1015385/101‑1 (MQ=255)
                                                             gACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                                         <  1:5485805/101‑1 (MQ=255)
                                                              aCGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg                                        >  1:12831456/1‑101 (MQ=255)
                                                              aCGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg                                        >  1:14656582/1‑101 (MQ=255)
                                                               cGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                                       <  1:8006561/101‑1 (MQ=255)
                                                               cGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                                       >  1:1303306/1‑101 (MQ=255)
                                                                gAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa                                      >  1:3770082/1‑101 (MQ=255)
                                                                   aGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCt                                   >  1:284973/1‑101 (MQ=255)
                                                                    gTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTc                                  <  1:11537215/101‑1 (MQ=255)
                                                                     tAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTcc                                 >  1:6055472/1‑101 (MQ=255)
                                                                        aaaTGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAcc                              <  1:5383040/101‑1 (MQ=255)
                                                                         aaTGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCg                             <  1:6287629/101‑1 (MQ=255)
                                                                              atatGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAtttt                        <  1:3578741/101‑1 (MQ=255)
                                                                                  gAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgaga                    <  1:3830210/101‑1 (MQ=255)
                                                                                  gAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgaga                    >  1:8407339/1‑101 (MQ=255)
                                                                                   aGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGaa                   <  1:12406690/101‑1 (MQ=255)
                                                                                   aGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGaa                   >  1:12910596/1‑101 (MQ=255)
                                                                                    gTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAc                  <  1:1167480/101‑1 (MQ=255)
                                                                                     ttGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg                 >  1:13803029/1‑101 (MQ=255)
                                                                                      tGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGa                <  1:4094146/101‑1 (MQ=255)
                                                                                       gCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAc               <  1:6019051/101‑1 (MQ=255)
                                                                                       gCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAc               >  1:12581718/1‑101 (MQ=255)
                                                                                          cTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGc            <  1:15924057/101‑1 (MQ=39)
                                                                                           tAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGACTTTGAGAACGACAGCg           >  1:11881332/1‑101 (MQ=38)
                                                                                            aaaaaaGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctattt          <  1:835313‑M1/101‑93 (MQ=255)
                                                                                            aaaaaaGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctattt          <  1:10314706‑M1/101‑93 (MQ=255)
                                                                                             aaaaaGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctattta         >  1:12728660‑M1/1‑8 (MQ=255)
                                                                                             aaaaaGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctattta         >  1:4796726‑M1/1‑8 (MQ=255)
                                                                                             aaaaaGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctattta         >  1:14115311‑M1/1‑8 (MQ=255)
                                                                                             aaaaaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGAc         >  1:10714437/1‑101 (MQ=35)
                                                                                             aaaaaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGAc         <  1:7697868/101‑1 (MQ=35)
                                                                                             aaaaaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGAc         >  1:2003581/1‑101 (MQ=35)
                                                                                              aaaaGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctatttat        <  1:10566816‑M1/101‑95 (MQ=255)
                                                                                              aaaaGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctatttat        <  1:14495047‑M1/101‑95 (MQ=255)
                                                                                              aaaaGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctatttat        >  1:4273097‑M1/1‑7 (MQ=255)
                                                                                              aaaaGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctataaagttactcactcttttctatttat        <  1:1888389‑M1/101‑95 (MQ=255)
                                                                                              aaaaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACt        >  1:8828397/1‑101 (MQ=34)
                                                                                                aaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCTGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTc      <  1:9311075/101‑1 (MQ=17)
                                                                                                aaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTc      >  1:9124912/1‑101 (MQ=32)
                                                                                                aaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTc      >  1:2936380/1‑101 (MQ=32)
                                                                                                 aGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctatttatgac     >  1:8714868‑M1/1‑4 (MQ=255)
                                                                                                 aGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctatttatgac     <  1:14295588‑M1/101‑98 (MQ=255)
                                                                                                  gCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctatttatgaca    >  1:12325463‑M1/1‑3 (MQ=255)
                                                                                                    gactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctatttatgacatg  >  1:1735802‑M1/1‑1 (MQ=255)
                                                                                                    gactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctatttatgacatg  >  1:7574925‑M1/1‑1 (MQ=255)
                                                                                                    gactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctatttatgacatg  <  1:6579928‑M1/101‑101 (MQ=255)
                                                                                                    |                                                                                                    
CACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTC  >  NC_007779/2411358‑2411558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.