mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 3,576,400 | 1 | .→A | 2.4% | 35.9 ‑0.7 ‑1.7 | 376 | intergenic (‑166/+51) | yihL/bipA | DNA‑binding transcriptional regulator/GTP‑binding protein |
| * | NC_007779 | 1,823,573 | 1 | .→A | 1.4% | 16.8 ‑0.9 ‑0.4 | 363 | intergenic (‑240/+59) | chbB/osmE | PTS system N,N'‑diacetylchitobiose‑specific transporter subunit IIB/DNA‑binding transcriptional regulator |
| * | NC_007779 | 4,510,865 | 1 | .→A | 1.1% | 11.6 0.0 ‑0.3 | 362 | coding (899/1119 nt) | yjhC | oxidoreductase |
| * | NC_007779 | 3,193,538 | 1 | .→A | 0.8% | 6.9 ‑0.6 ‑0.0 | 360 | intergenic (+357/+438) | yqiK/rfaE | hypothetical protein/fused heptose 7‑phosphate kinase and heptose 1‑phosphate adenyltransferase |
| * | NC_007779 | 3,338,299 | 1 | .→T | 0.8% | 6.9 ‑0.5 ‑0.2 | 374 | coding (18/552 nt) | yrbD | ABC‑type organic solvent transporter |
| * | NC_007779 | 2,287,403 | 1 | .→A | 0.8% | 6.8 ‑1.4 ‑0.1 | 356 | intergenic (‑122/‑60) | yejK/yejL | nucleotide associated protein/hypothetical protein |
| * | NC_007779 | 2,945,991 | 1 | .→A | 0.8% | 6.7 ‑1.3 ‑0.6 | 360 | intergenic (‑157/‑52) | mltA/metZ | membrane‑bound lytic murein transglycosylase A/tRNA‑Met |
| * | NC_007779 | 2,898,953 | 1 | .→A | 0.9% | 6.3 ‑1.4 ‑0.0 | 352 | intergenic (‑24/‑295) | ygcW/yqcE | deoxygluconate dehydrogenase/transporter |
| * | NC_007779 | 1,097,764 | 1 | .→A | 0.5% | 6.1 0.0 ‑0.2 | 637 | intergenic (+513/+42) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 4,043,972 | 1 | .→C | 0.5% | 2.9 ‑1.7 ‑0.2 | 380 | intergenic (+8/‑40) | livK/livH | leucine transporter subunit/leucine/isoleucine/valine transporter subunit |
| * | NC_007779 | 3,085,177 | 1 | .→A | 0.6% | 2.6 0.0 ‑0.0 | 355 | coding (130/252 nt) | yqgD | inner membrane protein |
| * | NC_007779 | 986,260 | 1 | .→A | 0.6% | 2.5 0.0 ‑0.3 | 351 | intergenic (‑129/+56) | aspC/ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| * | NC_007779 | 1,498,414 | 1 | .→A | 0.5% | 2.4 ‑1.6 ‑0.5 | 382 | intergenic (+69/‑186) | ydcJ/mdoD | hypothetical protein/glucan biosynthesis protein, periplasmic |
| * | NC_007779 | 3,188,902 | 1 | .→A | 0.5% | 2.4 ‑1.5 ‑0.2 | 364 | coding (366/750 nt) | yqiH | periplasmic pilin chaperone |
| * | NC_007779 | 3,831,997 | 1 | .→T | 0.6% | 2.4 ‑1.6 ‑1.2 | 344 | intergenic (‑122/‑320) | kdtA/rfaQ | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase/lipopolysaccharide core biosynthesis protein |
| * | NC_007779 | 1,773,948 | 1 | .→A | 0.6% | 2.3 ‑0.7 ‑0.0 | 347 | coding (1164/1215 nt) | ydiM | transporter |
| * | NC_007779 | 1,410,956 | 1 | .→T | 0.6% | 2.2 ‑0.7 ‑0.8 | 352 | intergenic (+209/‑269) | ydaN/dbpA | Zn(II) transporter/ATP‑dependent RNA helicase‑specific for 23S rRNA |
| * | NC_007779 | 3,776,590 | 1 | .→T | 0.5% | 1.9 0.0 ‑0.0 | 381 | intergenic (‑74/‑222) | yidP/glvC | DNA‑binding transcriptional regulator/PTS system arbutin‑specific transporter subunit IIC |
| * | NC_007779 | 617,588 | 1 | .→G | 0.5% | 1.8 ‑0.7 ‑0.0 | 378 | coding (112/1134 nt) | fepE | regulator of length of O‑antigen component of lipopolysaccharide chains |
| * | NC_007779 | 452,782 | 1 | .→C | 0.6% | 1.7 ‑0.7 ‑0.0 | 359 | intergenic (‑13/+31) | ampG/yajG | muropeptide transporter/lipoprotein |
| * | NC_007779 | 1,636,246 | 0 | C→T | 100.0% | 1.6 | 1 | T118T (ACG→ACA) | tfaQ | tail fiber assembly protein |
| * | NC_007779 | 1,636,248 | 0 | T→C | 100.0% | 1.6 | 1 | T118A (ACG→GCG) | tfaQ | tail fiber assembly protein |
| * | NC_007779 | 1,636,252 | 0 | C→T | 100.0% | 1.6 | 1 | K116K (AAG→AAA) | tfaQ | tail fiber assembly protein |
| * | NC_007779 | 730,360 | 0 | G→A | 100.0% | ‑0.5 | 1 | R119K (AGA→AAA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,363 | 0 | G→A | 100.0% | ‑0.5 | 1 | S120N (AGC→AAC) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,364 | 0 | C→A | 100.0% | ‑0.5 | 1 | S120R (AGC→AGA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,365 | 0 | C→A | 100.0% | ‑0.5 | 1 | L121M (CTG→ATG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,366 | 0 | T→A | 100.0% | ‑0.5 | 1 | L121Q (CTG→CAG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,367 | 0 | G→A | 100.0% | ‑0.5 | 1 | L121L (CTG→CTA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,368 | 0 | T→A | 100.0% | ‑0.5 | 1 | Y122N (TAT→AAT) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,370 | 0 | T→A | 100.0% | ‑0.5 | 1 | Y122* (TAT→TAA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,371 | 0 | T→A | 100.0% | ‑0.5 | 1 | F123I (TTT→ATT) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,372 | 0 | T→A | 100.0% | ‑0.5 | 1 | F123Y (TTT→TAT) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,373 | 0 | T→A | 100.0% | ‑0.5 | 1 | F123L (TTT→TTA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,374 | 0 | G→A | 100.0% | ‑0.5 | 1 | E124K (GAG→AAG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,376 | 0 | G→A | 100.0% | ‑0.5 | 1 | E124E (GAG→GAA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,377 | 0 | C→A | 100.0% | ‑0.5 | 1 | H125N (CAC→AAC) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,379 | 0 | C→A | 100.0% | ‑0.5 | 1 | H125Q (CAC→CAA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,380 | 0 | C→A | 100.0% | ‑0.5 | 1 | L126M (CTG→ATG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,381 | 0 | T→A | 100.0% | ‑0.5 | 1 | L126Q (CTG→CAG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,382 | 0 | G→A | 100.0% | ‑0.5 | 1 | L126L (CTG→CTA) | rhsC | rhsC element core protein RshC |