mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 4,429,129 | 1 | .→A | 0.8% | 7.7 ‑0.5 ‑0.1 | 359 | intergenic (+63/+67) | ulaF/yjfY | L‑ribulose 5‑phosphate 4‑epimerase/hypothetical protein |
| * | NC_007779 | 3,841,755 | 1 | .→A | 0.9% | 6.9 ‑1.2 ‑0.6 | 342 | coding (653/1074 nt) | rfaK | lipopolysaccharide core biosynthesis |
| * | NC_007779 | 1,881,068 | 1 | .→T | 0.8% | 6.6 0.0 ‑0.1 | 354 | intergenic (‑99/+49) | yeaQ/yoaG | inner membrane protein/hypothetical protein |
| * | NC_007779 | 3,721,172 | 1 | .→T | 0.8% | 6.4 ‑0.5 ‑0.2 | 370 | intergenic (+44/‑309) | atpC/glmU | F1 sector of membrane‑bound ATP synthase subunit epsilon/fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyl transferase |
| * | NC_007779 | 77,585 | 1 | .→T | 0.6% | 2.5 ‑0.7 ‑0.1 | 346 | intergenic (‑286/‑36) | sgrR/setA | DNA‑binding transcriptional regulator/broad‑specificity sugar efflux system |
| * | NC_007779 | 1,410,956 | 1 | .→T | 0.6% | 2.5 ‑1.4 ‑0.3 | 355 | intergenic (+209/‑269) | ydaN/dbpA | Zn(II) transporter/ATP‑dependent RNA helicase‑specific for 23S rRNA |
| * | NC_007779 | 2,101,940 | 1 | .→A | 0.5% | 2.4 0.0 ‑0.1 | 370 | intergenic (‑190/+59) | ugd/gnd | UDP‑glucose 6‑dehydrogenase/gluconate‑6‑phosphate dehydrogenase, decarboxylating |
| * | NC_007779 | 3,930,853 | 1 | .→G | 0.6% | 2.4 0.0 ‑0.0 | 341 | coding (914/1692 nt) | eptB | metal dependent hydrolase |
| * | NC_007779 | 4,036,181 | 1 | .→A | 0.5% | 2.4 0.0 ‑0.1 | 367 | coding (10/1494 nt) | ftsY | fused Signal Recognition Particle (SRP) receptor |
| * | NC_007779 | 1,181,175 | 1 | .→T | 0.6% | 2.3 0.0 ‑0.7 | 348 | coding (79/840 nt) | cobB | deacetylase of acetyl‑CoA synthetase |
| * | NC_007779 | 1,348,546 | 1 | .→T | 0.5% | 2.3 ‑0.7 ‑0.7 | 373 | intergenic (‑90/+146) | gmr/rnb | modulator of Rnase II stability/ribonuclease II |
| * | NC_007779 | 4,599,473 | 1 | .→G | 0.6% | 2.3 ‑0.7 ‑0.0 | 359 | intergenic (‑71/+144) | yjiZ/yjjM | transporter/DNA‑binding transcriptional regulator |
| * | NC_007779 | 2,287,403 | 1 | .→A | 0.5% | 2.2 0.0 ‑0.0 | 378 | intergenic (‑122/‑60) | yejK/yejL | nucleotide associated protein/hypothetical protein |
| * | NC_007779 | 3,068,772 | 1 | .→A | 0.5% | 2.2 ‑0.7 ‑0.0 | 386 | intergenic (‑309/+49) | mscS/fbaA | mechanosensitive channel/fructose‑bisphosphate aldolase, class II |
| * | NC_007779 | 4,640,073 | 1 | .→T | 0.5% | 2.1 0.0 ‑0.6 | 375 | intergenic (‑83/‑128) | rob/creA | DNA‑binding transcriptional activator/hypothetical protein |
| * | NC_007779 | 3,776,598 | 1 | .→A | 0.6% | 2.0 0.0 ‑0.0 | 357 | intergenic (‑82/‑214) | yidP/glvC | DNA‑binding transcriptional regulator/PTS system arbutin‑specific transporter subunit IIC |
| * | NC_007779 | 3,193,538 | 1 | .→A | 0.6% | 1.3 ‑1.4 ‑0.0 | 343 | intergenic (+357/+438) | yqiK/rfaE | hypothetical protein/fused heptose 7‑phosphate kinase and heptose 1‑phosphate adenyltransferase |
| * | NC_007779 | 2,393,765 | 1 | .→T | 0.5% | 1.0 0.0 0.0 | 375 | intergenic (+38/‑18) | yfbO/yfbP | hypothetical protein/hypothetical protein |
| * | NC_007779 | 1,182,948 | 1 | .→A | 0.5% | 0.9 0.0 ‑0.0 | 384 | coding (355/462 nt) | ymfA | inner membrane protein |
| * | NC_007779 | 3,605,580 | 0 | G→T | 1.1% | 0.1 ‑3.5 ‑0.4 | 445 | intergenic (‑60/‑130) | pepQ/fadB | proline dipeptidase/bifunctional 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase and 3‑hydroxyacyl‑CoA dehydrogenase |
| * | NC_007779 | 1,050,584 | 0 | C→A | 100.0% | ‑0.5 | 1 | Q46K (CAG→AAG) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,586 | 0 | G→A | 100.0% | ‑0.5 | 1 | Q46Q (CAG→CAA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,587 | 0 | T→A | 100.0% | ‑0.5 | 1 | W47R (TGG→AGG) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,588 | 0 | G→A | 100.0% | ‑0.5 | 1 | W47* (TGG→TAG) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,589 | 0 | G→A | 100.0% | ‑0.5 | 1 | W47* (TGG→TGA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,590 | 0 | G→A | 100.0% | ‑0.5 | 1 | G48R (GGA→AGA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,591 | 0 | G→A | 100.0% | ‑0.5 | 1 | G48E (GGA→GAA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,593 | 0 | T→A | 100.0% | ‑0.5 | 1 | Y49N (TAC→AAC) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,595 | 0 | C→A | 100.0% | ‑0.5 | 1 | Y49* (TAC→TAA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,596 | 0 | G→A | 100.0% | ‑0.5 | 1 | V50I (GTC→ATC) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,597 | 0 | T→A | 100.0% | ‑0.5 | 1 | V50D (GTC→GAC) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,598 | 0 | C→A | 100.0% | ‑0.5 | 1 | V50V (GTC→GTA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,599 | 0 | G→A | 100.0% | ‑0.5 | 1 | G51R (GGG→AGG) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,600 | 0 | G→A | 100.0% | ‑0.5 | 1 | G51E (GGG→GAG) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,601 | 0 | G→A | 100.0% | ‑0.5 | 1 | G51G (GGG→GGA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,602 | 0 | G→A | 100.0% | ‑0.5 | 1 | A52T (GCT→ACT) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,603 | 0 | C→A | 100.0% | ‑0.5 | 1 | A52D (GCT→GAT) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,604 | 0 | T→A | 100.0% | ‑0.5 | 1 | A52A (GCT→GCA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,608 | 0 | T→A | 100.0% | ‑0.5 | 1 | S54T (TCG→ACG) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,609 | 0 | C→A | 100.0% | ‑0.5 | 1 | S54* (TCG→TAG) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,610 | 0 | G→A | 100.0% | ‑0.5 | 1 | S54S (TCG→TCA) | insB | IS1 transposase InsAB' |