| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 2319510 | 238 (0.830) | 57 (0.200) | 47/180 | NT | 19.3% | intergenic (+16/‑1) | rcsD/rcsB | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC/DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN |
| ? | NC_007779 | 2320794 = | NA (NA) | intergenic (+633/+11) | rcsB/insD | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/IS2 element protein | |||||
GAACATCTGATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_007779/2319411‑2319510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACC > NC_007779/2320794‑2320882 GAACATCTGATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACT < 1:3247523/101‑1 AACATCTGATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTG > 1:2062288/1‑101 AACATCTGATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTG > 1:6292193/1‑101 ACATCTGATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGG > 1:10154851/1‑101 ACATCTGATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGG > 1:2719884/1‑101 ATCTGATTCGTGAGAAGGATGGTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGAT > 1:8817775/1‑101 TCTGATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATT < 1:11993449/101‑1 TGATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTG < 1:1047913/101‑1 TGATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTG > 1:2491597/1‑101 GATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGC > 1:12714972/1‑101 ATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCC > 1:10012748/1‑101 GTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTA > 1:7856054/1‑101 GTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTA < 1:14327271/101‑1 TGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTAT > 1:5314637/1‑101 GAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATA < 1:12890242/101‑1 GAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATA < 1:3832898/101‑1 GAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATA > 1:5311537/1‑101 AGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATAT > 1:13731005/1‑101 AGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATAT > 1:2439723/1‑101 GAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATT < 1:9163582/101‑1 AGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTC < 1:3548834/101‑1 GGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCC > 1:8705920/1‑101 ATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAG > 1:11383782/1‑101 GTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGAC < 1:11979421/101‑1 GTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGAC < 1:8422141/101‑1 GTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGAC < 1:1938626/101‑1 CAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCT > 1:2924352/1‑101 AGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTG > 1:5852083/1‑101 GAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTT > 1:11354483/1‑101 GAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTT < 1:11480693/101‑1 AATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTA > 1:1082138/1‑101 AATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTA > 1:10982166/1‑101 AATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTA > 1:14039190/1‑101 AATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTA > 1:3553905/1‑101 ATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTAT > 1:5335366/1‑101 ATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTAT < 1:12473708/101‑1 ATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAC < 1:677866/101‑1 TACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACC > 1:5387180/1‑101 TACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACC < 1:14332094/101‑1 TCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATT < 1:4829149/101‑1 AGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC > 1:9345544/1‑101 GACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAG > 1:3695747/1‑101 GACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAG > 1:14589958/1‑101 ACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGC < 1:12671570/101‑1 CATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCC < 1:5931457/101‑1 TGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGC < 1:2287363/101‑1 AGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCC > 1:9840524/1‑101 AGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCC < 1:10339787/101‑1 TTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGC > 1:387802/1‑101 GTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGAT > 1:7443287/1‑101 CAAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATAT < 1:2603571/101‑1 AAGAGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATT < 1:2000628/101‑1 AGCTTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCC < 1:5972427/101‑1 TTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTG > 1:9529200/1‑101 TTGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTG > 1:11369179/1‑101 TGCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGG > 1:601052/1‑101 GCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGC > 1:12787996/1‑101 GCTGTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGC > 1:12610428/1‑101 GTAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCATACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAG < 1:3280183/101‑1 TAGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGC > 1:7203631/1‑101 AGCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCG > 1:6255639/1‑101 GCAAGGTAGCCTATTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGA > 1:8694369/1‑101 GTAGCCTATTACTGGATTTGCCCCTATATTTCAAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACC > 1:5677529/1‑101 GAACATCTGATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_007779/2319411‑2319510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACC > NC_007779/2320794‑2320882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |