mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 3,900,676 | 1 | .→G | 1.8% | 21.4 ‑5.6 ‑0.0 | 330 | coding (35/1254 nt) | avtA | valine‑pyruvate aminotransferase |
| * | NC_007779 | 3,385,700 | 1 | .→T | 1.2% | 10.4 0.0 ‑0.0 | 340 | intergenic (+44/+12) | yhcN/yhcO | hypothetical protein/barnase inhibitor |
| * | NC_007779 | 1,716,031 | 1 | .→T | 0.9% | 7.3 0.0 ‑0.8 | 333 | intergenic (+46/‑60) | ydgR/gst | transporter/glutathionine S‑transferase |
| * | NC_007779 | 301 | 1 | .→T | 0.9% | 7.0 ‑0.5 ‑0.1 | 331 | intergenic (+46/‑36) | thrL/thrA | thr operon leader peptide/fused aspartokinase I and homoserine dehydrogenase I |
| * | NC_007779 | 2,418,070 | 1 | .→A | 0.9% | 7.0 ‑0.6 ‑0.3 | 331 | intergenic (‑30/+53) | yfbU/yfbV | hypothetical protein/inner membrane protein |
| * | NC_007779 | 606,687 | 1 | .→T | 0.9% | 6.9 ‑0.5 ‑0.1 | 320 | intergenic (‑81/‑372) | ybdK/hokE | gamma‑glutamyl:cysteine ligase/toxic polypeptide |
| * | NC_007779 | 1,225,577 | 1 | .→G | 0.9% | 6.8 ‑2.3 ‑0.0 | 344 | intergenic (+93/+279) | ycgI/minE | hypothetical protein/cell division topological‑specificity factor |
| * | NC_007779 | 3,561,760 | 1 | .→T | 0.9% | 6.6 ‑2.4 ‑0.0 | 347 | coding (253/786 nt) | yihW | DNA‑binding transcriptional regulator |
| * | NC_007779 | 4,128,669 | 1 | .→T | 0.9% | 5.7 ‑1.4 ‑0.8 | 319 | coding (598/906 nt) | yhfZ | hypothetical protein |
| * | NC_007779 | 915,734 | 1 | .→A | 0.6% | 2.8 0.0 ‑0.2 | 345 | intergenic (‑455/+40) | ybjE/aqpZ | transporter/aquaporin |
| * | NC_007779 | 932,754 | 1 | .→A | 0.6% | 2.8 0.0 ‑0.0 | 316 | intergenic (‑282/‑263) | trxB/lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator |
| * | NC_007779 | 1,410,956 | 1 | .→T | 0.6% | 2.8 0.0 ‑0.3 | 324 | intergenic (+209/‑269) | ydaN/dbpA | Zn(II) transporter/ATP‑dependent RNA helicase‑specific for 23S rRNA |
| * | NC_007779 | 847,608 | 1 | .→G | 0.6% | 2.7 ‑0.7 ‑0.1 | 314 | intergenic (‑67/+72) | glnP/glnH | glutamine transporter subunit/glutamine transporter subunit |
| * | NC_007779 | 2,945,991 | 1 | .→A | 0.6% | 2.7 0.0 ‑0.6 | 317 | intergenic (‑157/‑52) | mltA/metZ | membrane‑bound lytic murein transglycosylase A/tRNA‑Met |
| * | NC_007779 | 3,648,353 | 1 | .→A | 0.6% | 2.6 ‑0.7 ‑0.0 | 329 | coding (739/1182 nt) | hemX | uroporphyrinogen III methylase |
| * | NC_007779 | 1,759,411 | 1 | .→T | 0.6% | 2.5 ‑0.7 ‑0.2 | 321 | intergenic (+40/+24) | lpp/ynhG | murein lipoprotein/hypothetical protein |
| * | NC_007779 | 3,576,400 | 1 | .→A | 0.6% | 2.3 ‑0.7 ‑0.7 | 328 | intergenic (‑166/+51) | yihL/bipA | DNA‑binding transcriptional regulator/GTP‑binding protein |
| * | NC_007779 | 4,200,831 | 1 | .→G | 0.6% | 2.3 ‑1.5 ‑0.1 | 311 | intergenic (+31/‑76) | rplQ/yhdN | 50S ribosomal protein L17/hypothetical protein |
| * | NC_007779 | 4,484,644 | 1 | .→T | 0.6% | 2.3 ‑0.6 ‑0.4 | 341 | coding (235/1197 nt) | yjgN | inner membrane protein |
| * | NC_007779 | 1,739,073 | 1 | .→A | 0.6% | 1.9 ‑0.7 ‑0.1 | 329 | intergenic (‑69/‑485) | ydhP/purR | transporter/DNA‑binding transcriptional repressor |
| * | NC_007779 | 3,599,334 | 0 | T→C | 100.0% | 1.3 | 1 | intergenic (‑172/+12) | rrlA/alaT | 23S ribosomal RNA/tRNA‑Ala |
| * | NC_007779 | 1,050,363 | 0 | A→. | 100.0% | ‑0.2 | 1 | coding (109/276 nt) | insA | IS1 repressor protein InsA |
| * | NC_007779 | 3,460,326 | 0 | A→C | 100.0% | ‑0.2 | 1 | C138G (TGC→GGC) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 3,460,330 | 0 | G→T | 100.0% | ‑0.2 | 1 | N136K (AAC→AAA) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 4,212,818 | 0 | T→G | 100.0% | ‑0.2 | 1 | noncoding (1165/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 227,407 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1649/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,409 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1651/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,411 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1653/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,414 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (1656/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,415 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (1657/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,416 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (1658/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,417 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1659/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,418 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1660/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,419 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1661/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,420 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (1662/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,421 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1663/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,424 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1666/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,425 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1667/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,428 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (1670/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,429 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (1671/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,431 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1673/2904 nt) | rrlH | 23S ribosomal RNA |