BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	273180 =	NA (NA)	5 (0.020)	5/178	NT	1.3%	coding (1110/1146 nt)	ykfC	hypothetical protein
*	?	NC_007779	656434 =	381 (1.380)	5 (0.020)	5/178	NT	1.3%	intergenic (+1173/‑545)	insH/crcA	IS5 element protein/palmitoyl transferase for Lipid A

Only 100 of 477 total aligned reads displayed.

GCGAGCTACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTTATAC  >  NC_007779/656334‑656534

gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgccccttcc                                                                                                      <  1:1656233‑M2/1‑1 (MQ=255)

gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                      <  1:4435994‑M2/1‑1 (MQ=255)

gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                      >  1:13179842‑M2/101‑101 (MQ=255)

gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                      <  1:2414749‑M2/1‑1 (MQ=255)

gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                      <  1:2631071‑M2/1‑1 (MQ=255)

gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                      <  1:12149571‑M2/1‑1 (MQ=255)

gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgcaccttcc                                                                                                      >  1:12048610‑M2/101‑101 (MQ=255)

gctgattcaaggcatttacggcagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                                      <  1:1601038‑M2/1‑1 (MQ=255)

gCGAGCTACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTc                                                                                                      >  1:6264858/1‑101 (MQ=255)

   aGCTACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTa                                                                                                   <  1:4134155/101‑1 (MQ=255)

    gCTACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTaa                                                                                                  <  1:7252603/101‑1 (MQ=255)

    gCTACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTaa                                                                                                  >  1:7564475/1‑101 (MQ=255)

      taaaaccAAAAGAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAg                                                                                                <  1:4926742/96‑1 (MQ=255)

      tACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAg                                                                                                <  1:6838256/101‑1 (MQ=255)

      tACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAg                                                                                                <  1:12847843/101‑1 (MQ=255)

      tACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAg                                                                                                <  1:8897226/101‑1 (MQ=255)

      tACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAg                                                                                                <  1:6392518/101‑1 (MQ=255)

         acCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTaaggaag                                                                                             <  1:5559556/101‑6 (MQ=255)

         acCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCtt                                                                                             >  1:9646936/1‑101 (MQ=255)

          cccACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTa                                                                                            >  1:10284037/1‑101 (MQ=255)

          cccACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTa                                                                                            <  1:9785496/101‑1 (MQ=255)

           ccACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTaa                                                                                           <  1:10766691/101‑1 (MQ=255)

              caATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTaaggaaggtgcg                                                                                        >  1:1118667/1‑91 (MQ=255)

               aaTAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGaa                                                                                       <  1:14422848/101‑1 (MQ=255)

                aTAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGaaa                                                                                      >  1:10126899/1‑101 (MQ=255)

                  aaCCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGaaaaa                                                                                    <  1:8523993/101‑1 (MQ=255)

                   aCCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGaaaaaa                                                                                   >  1:1841176/1‑101 (MQ=255)

                   aCCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGaaaaaa                                                                                   >  1:7837567/1‑101 (MQ=255)

                     cacaACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAata                                                                                 >  1:8196510/1‑101 (MQ=255)

                     cacaACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAata                                                                                 >  1:12487595/1‑101 (MQ=255)

                     cacaACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAata                                                                                 >  1:3265928/1‑101 (MQ=255)

                      acaACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAGATTCCTAAAGCTTAAGGAAAAAatat                                                                                >  1:10511870/1‑101 (MQ=255)

                         aCCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGcc                                                                             >  1:6513446/1‑101 (MQ=255)

                            ccAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCaa                                                                          >  1:1446796/1‑101 (MQ=255)

                              aaTAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATa                                                                        >  1:1403830/1‑101 (MQ=255)

                              aaTAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATa                                                                        >  1:4339663/1‑101 (MQ=255)

                               aTAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATaa                                                                       <  1:11875362/101‑1 (MQ=255)

                                tAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATaaa                                                                      >  1:1483558/1‑101 (MQ=255)

                                 aaGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAAt                                                                     >  1:7320042/1‑101 (MQ=255)

                                  aGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAAtt                                                                    <  1:11792339/101‑1 (MQ=255)

                                  aGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAAtt                                                                    <  1:3932909/101‑1 (MQ=255)

                                   ggAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTg                                                                   <  1:6023252/101‑1 (MQ=255)

                                     aGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGc                                                                 <  1:4661043/101‑1 (MQ=255)

                                      gCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCg                                                                <  1:7024891/101‑1 (MQ=255)

                                      gCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCg                                                                <  1:8406087/101‑1 (MQ=255)

                                        tCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGAt                                                              <  1:5860246/101‑1 (MQ=255)

                                        tCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGAt                                                              >  1:4290037/1‑101 (MQ=255)

                                        tCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGAt                                                              >  1:1002367/1‑101 (MQ=255)

                                         cAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATg                                                             >  1:4554180/1‑101 (MQ=255)

                                         cAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATg                                                             <  1:10428885/101‑1 (MQ=255)

                                              aatgTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGc                                                        <  1:3351736/101‑1 (MQ=255)

                                               atgTCAGCATAATTTTTCCTGTCTCCAGGCCTCAAAGTAAATAATATAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCt                                                       <  1:12929181/101‑1 (MQ=255)

                                               atgTCAGCATAATTTCTCCTGTCTCCAGGCCCTAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCt                                                       <  1:9874771/101‑1 (MQ=255)

                                                  tCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGAt                                                    <  1:11417826/101‑1 (MQ=255)

                                                    aGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTa                                                  >  1:9048930/1‑101 (MQ=255)

                                                      cATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGACCAATAAATTGGCGATGAATGCTGATTaaa                                                <  1:11318158/101‑1 (MQ=255)

                                                       aTAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTaaaa                                               >  1:13522595/1‑101 (MQ=255)

                                                       aTAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTaaaa                                               <  1:508531/101‑1 (MQ=255)

                                                        tAATTTTTGCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAAt                                              <  1:13309049/101‑1 (MQ=255)

                                                        tAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAAt                                              >  1:11687528/1‑101 (MQ=255)

                                                        tAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAAt                                              >  1:13698216/1‑101 (MQ=255)

                                                        tAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAAt                                              <  1:3100864/101‑1 (MQ=255)

                                                         aaTTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATc                                             <  1:9564359/101‑1 (MQ=255)

                                                          aTTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCa                                            >  1:8286106/1‑101 (MQ=255)

                                                          aTTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCa                                            >  1:14138442/1‑101 (MQ=255)

                                                          aTTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCa                                            >  1:7466658/1‑101 (MQ=255)

                                                          aTTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCa                                            >  1:11548368/1‑101 (MQ=255)

                                                           tttttCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCaa                                           >  1:11084548/1‑101 (MQ=255)

                                                           tttttCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCaa                                           >  1:2229909/1‑101 (MQ=255)

                                                             tttCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGa                                         >  1:8784965/1‑101 (MQ=255)

                                                                ccTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGaaaa                                      >  1:7752386/1‑101 (MQ=255)

                                                                    tctcCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTg                                  >  1:10061004/1‑101 (MQ=255)

                                                                     ctcCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGc                                 <  1:8636637/101‑1 (MQ=255)

                                                                      tcCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGcc                                <  1:666556/101‑1 (MQ=255)

                                                                      tcCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGcc                                >  1:3775658/1‑101 (MQ=255)

                                                                         aGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCAtt                             <  1:6156963/101‑1 (MQ=255)

                                                                           gCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTaa                           <  1:11977714/101‑1 (MQ=255)

                                                                            ccccAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAg                          <  1:1041129/101‑1 (MQ=255)

                                                                            ccccAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAg                          >  1:2090388/1‑101 (MQ=255)

                                                                            ccccAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAg                          >  1:14323633/1‑101 (MQ=255)

                                                                            atttccccgcttattcgcaccttcCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAg                          >  1:12354384‑M2/25‑101 (MQ=255)

                                                                             cccAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGa                         >  1:14270414/1‑101 (MQ=255)

                                                                               cAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACa                       <  1:5267595/101‑1 (MQ=255)

                                                                                    tAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGaa                  >  1:7908569/1‑101 (MQ=255)

                                                                                    tAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGaa                  <  1:8072636/101‑1 (MQ=255)

                                                                                     aaaTAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAg                 >  1:10987997/1‑101 (MQ=255)

                                                                                      aataatAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGt                >  1:10895218/1‑101 (MQ=255)

                                                                                       ataataAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGtt               <  1:9328299/101‑1 (MQ=255)

                                                                                        taataaAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTg              <  1:5403262/101‑1 (MQ=255)

                                                                                         aataaAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGc             >  1:9416796/1‑101 (MQ=255)

                                                                                          ataaAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCt            <  1:2996541/101‑1 (MQ=255)

                                                                                          ataaAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCt            >  1:6620270/1‑101 (MQ=255)

                                                                                          ataaAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCt            <  1:4048512/101‑1 (MQ=255)

                                                                                          ataaAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCt            <  1:3416705/101‑1 (MQ=255)

                                                                                             aaaaaTTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGtt         <  1:14380500/101‑1 (MQ=255)

                                                                                             aaaaaTTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGtt         <  1:10673261/101‑1 (MQ=255)

                                                                                             aaaaaTTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGtt         >  1:9186701/1‑101 (MQ=255)

                                                                                              aaaaTTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGttt        >  1:3621403/1‑101 (MQ=255)

                                                                                                    CCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTTATAc  <  1:13796358‑M2/101‑1 (MQ=255)

                                                                                                    CCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTTATAc  <  1:1939189‑M2/101‑1 (MQ=255)

GCGAGCTACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTTATAC  >  NC_007779/656334‑656534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.