New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 654213 =NA (NA)273 (1.010) 132/180 NT 82.2% intergenic (+448/‑68) citB/insH DNA‑binding response regulator in two‑component regulatory system with citA/IS5 element protein
?NC_007779 = 657846 59 (0.220)coding (133/210 nt) cspE DNA‑binding transcriptional repressor

Only 100 of 297 total aligned reads displayed.

TGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/654308‑654213
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGACTCATT  <  NC_007779/657846‑657747
                                                                                                                                                                                                    
tgcCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACCAACATGATCTCATATCAGGCACTTGTTCGCACCTTCCCAAGA                                                                                                 >  1:8973239/4‑101
       GAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAA                                                                                          >  1:12044522/1‑101
        AAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAA                                                                                         >  1:487549/1‑101
         AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAA                                                                                        <  1:11232293/101‑1
          GGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAAC                                                                                       >  1:9735532/1‑101
           GTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACC                                                                                      <  1:12399006/101‑1
            TAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCA                                                                                     >  1:3216807/1‑101
              AGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATT                                                                                   <  1:8193608/101‑1
                 TGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCCAAGAGTTTTAAAACCATTAGT                                                                                <  1:309697/101‑1
                 TGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGT                                                                                >  1:12904498/1‑101
                    TGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTG                                                                             <  1:3317226/101‑1
                     GACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTCGTCTGG                                                                            >  1:10514455/1‑101
                     GACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGG                                                                            <  1:3974567/101‑1
                     GACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGG                                                                            >  1:7183226/1‑101
                        TCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATT                                                                         <  1:6294946/101‑1
                        TCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATT                                                                         <  1:10582960/101‑1
                        TCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATT                                                                         <  1:14004150/101‑1
                            GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAG                                                                     <  1:91128/101‑1
                            GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAG                                                                     <  1:2708591/101‑1
                             ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGA                                                                    >  1:6558916/1‑101
                              TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAG                                                                   <  1:11958618/101‑1
                              TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAG                                                                   >  1:2872935/1‑101
                              TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAG                                                                   >  1:11088377/1‑101
                              TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAG                                                                   >  1:10319904/1‑101
                               GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGATCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGA                                                                  <  1:11713733/101‑1
                                AACCCTGTTCTATGGCTCCAGATGATAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAA                                                                 >  1:3202561/1‑101
                                AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAA                                                                 <  1:13757635/101‑1
                                AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAA                                                                 <  1:14153624/101‑1
                                AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAA                                                                 <  1:708602/101‑1
                                    CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGT                                                             <  1:12436468/101‑1
                                    CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGT                                                             <  1:4996991/101‑1
                                     TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTA                                                            >  1:144620/1‑101
                                      GTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGAATGCAGAGAAGTGTAC                                                           <  1:193160/101‑1
                                       TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACG                                                          <  1:216620/101‑1
                                        TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGA                                                         <  1:4793773/101‑1
                                        TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGA                                                         >  1:1665492/1‑101
                                         CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAA                                                        <  1:7603493/101‑1
                                            TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACAC                                                     <  1:3610218/101‑1
                                             GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACG                                                    <  1:6968379/101‑1
                                             GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACG                                                    >  1:7429823/1‑101
                                              GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGT                                                   <  1:13423603/101‑1
                                              GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGT                                                   <  1:5030728/101‑1
                                              GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGT                                                   <  1:8269836/101‑1
                                               CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTC                                                  <  1:13924985/101‑1
                                                 CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTT                                                <  1:12676043/101‑1
                                                   AGATGATAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTG                                              >  1:7814466/1‑101
                                                   AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTG                                              >  1:13619799/1‑101
                                                   AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTG                                              >  1:3029203/1‑101
                                                     ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCT                                            <  1:12944206/101‑1
                                                     ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCT                                            <  1:12572981/101‑1
                                                       GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGC                                          <  1:10086643/101‑1
                                                         CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCG                                        <  1:2237567/101‑1
                                                          AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGT                                       >  1:4657722/1‑101
                                                           AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTC                                      >  1:3443905/1‑101
                                                           AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTC                                      >  1:10671208/1‑101
                                                             CATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTGAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTT                                    >  1:3376276/1‑101
                                                              ATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTC                                   >  1:8684265/1‑101
                                                               TGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCC                                  >  1:10389403/1‑101
                                                                   CTCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAG                              >  1:6133786/1‑101
                                                                   CTCATAGCAGGGACTTGTTCGCCCCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACCCGTCTTTGCTGCCGTCTTCCGGAG                              <  1:5385670/101‑1
                                                                    TCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGT                             >  1:9516038/1‑101
                                                                    TCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGT                             <  1:9845319/101‑1
                                                                    TCATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGT                             <  1:12203375/101‑1
                                                                     CATATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTA                            >  1:12196410/1‑101
                                                                       TATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAAT                          <  1:2573184/101‑1
                                                                        ATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATG                         <  1:748432/101‑1
                                                                        ATCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATG                         <  1:5637464/101‑1
                                                                         TCAGGGACTTGTTCGCTCCTTCCCAAGAGTGTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGA                        <  1:723755/101‑1
                                                                         TCAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGA                        <  1:6038161/101‑1
                                                                          CAGGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAA                       <  1:5910877/101‑1
                                                                            GGGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAAC                     <  1:13303763/101‑1
                                                                             GGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACC                    >  1:11396577/1‑101
                                                                             GGACTTGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACC                    >  1:6844197/1‑101
                                                                                  TGTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATC               <  1:9450126/101‑1
                                                                                   GTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCC              <  1:2822926/101‑1
                                                                                   GTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCC              <  1:12806485/101‑1
                                                                                   GTTCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCC              >  1:12083181/1‑101
                                                                                     TCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTT            >  1:5497158/1‑101
                                                                                     TCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTT            >  1:4057186/1‑101
                                                                                     TCGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTT            >  1:1842145/1‑101
                                                                                      CGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTT           <  1:7287130/101‑1
                                                                                      CGCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTT           <  1:10542920/101‑1
                                                                                       GCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTG          <  1:1478941/101‑1
                                                                                       GCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTG          >  1:1153123/1‑101
                                                                                       GCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTG          >  1:2095277/1‑101
                                                                                       GCACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTG          <  1:527521/101‑1
                                                                                        CACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGG         <  1:12953729/101‑1
                                                                                         ACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGA        >  1:9204453/1‑101
                                                                                         ACCTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGA        <  1:13111259/101‑1
                                                                                           CTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGACT      >  1:96019/1‑101
                                                                                           CTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGACT      <  1:4276171/101‑1
                                                                                           CTTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGACT      <  1:455850/101‑1
                                                                                            TTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGACTC     >  1:14413248/1‑101
                                                                                            TTCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGACTC     >  1:6691762/1‑101
                                                                                             TCCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGACTCA    >  1:10012021/1‑101
                                                                                              CCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGACTCAT   <  1:12623984/101‑1
                                                                                              CCCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGACTCAT   <  1:1698729/101‑1
                                                                                               CCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGACTCATa  <  1:3586484/101‑2
                                                                                               CCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGACTCATT  <  1:7675412/101‑1
                                                                                               CCAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGACTCATT  >  1:2979134/1‑101
                                                                                                                                                                                                    
TGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/654308‑654213
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGAGTTTTAAAACCATTAGTCTGGATTGCAGAGAAGTGTACGAACACGTCTTTGCTGCCGTCTTCCGGAGTAATGAAACCGAATCCTTTGGACTCATT  <  NC_007779/657846‑657747

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.