New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_007779 | = 2322124 | NA (NA) | 271 (1.000) | 135/180 | NT | 100% | intergenic (‑91/‑2589) | insC/atoS | IS2 element protein/sensory histidine kinase in two‑component regulatory system with AtoC |
? | NC_007779 | 2589830 = | 0 (0.000) | intergenic (+466/‑73) | acrD/yffB | aminoglycoside/multidrug efflux system/hypothetical protein |
TGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGATCGTCGCTCT > NC_007779/2322035‑2322136 | tGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTC‑AGAtcggaagagc < 1:2595448/101‑8 (MQ=11) | TGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGATCGTCGCTCT > NC_007779/2322035‑2322136 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |