BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 655407	NA (NA)	6 (0.020)	5/180	NT	1.7%	intergenic (+146/‑1572)	insH/crcA	IS5 element protein/palmitoyl transferase for Lipid A
*	?	NC_007779	= 656438	346 (1.280)	6 (0.020)	5/180	NT	1.7%	intergenic (+1177/‑541)	insH/crcA	IS5 element protein/palmitoyl transferase for Lipid A

Only 100 of 405 total aligned reads displayed.

GCTACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTTATACATAG  >  NC_007779/656338‑656538

gCTACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTaa                                                                                                      <  1:3400094/101‑1 (MQ=255)

gCTACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTaa                                                                                                      <  1:297677/101‑1 (MQ=255)

 cTACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTaaa                                                                                                     <  1:4848286/101‑1 (MQ=255)

 cTACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTaaa                                                                                                     <  1:11838808/101‑1 (MQ=255)

   acacCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGc                                                                                                   >  1:1659691/1‑101 (MQ=255)

    cacCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCt                                                                                                  <  1:14382293/101‑1 (MQ=255)

     acCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCtt                                                                                                 <  1:638916/101‑1 (MQ=255)

      cccACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTTCTAAAGCTTa                                                                                                <  1:9781156/101‑1 (MQ=255)

      cccACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTa                                                                                                <  1:3113443/101‑1 (MQ=255)

       ccACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAggaaggt                                                                                               >  1:13224132‑M2/1‑94 (MQ=255)

       ccACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTaa                                                                                               >  1:9892651/1‑101 (MQ=255)

         acaATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAgg                                                                                             <  1:3501400/101‑1 (MQ=255)

          caATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGa                                                                                            <  1:9403366/101‑1 (MQ=255)

            aTAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGaaa                                                                                          <  1:9165889/101‑1 (MQ=255)

            aTAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGaaa                                                                                          <  1:8734260/101‑1 (MQ=255)

             tAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGaaaa                                                                                         <  1:4507513/101‑1 (MQ=255)

             tAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGaaaa                                                                                         <  1:3752537/101‑1 (MQ=255)

              aaCCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGaaaaa                                                                                        >  1:9521875/1‑101 (MQ=255)

              aaCCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGaaaaa                                                                                        <  1:11983944/101‑1 (MQ=255)

               aCCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGaaaaaa                                                                                       <  1:2270702/101‑1 (MQ=255)

                 cacaACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAata                                                                                     >  1:14258935/1‑101 (MQ=255)

                 cacaACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAata                                                                                     >  1:12769115/1‑101 (MQ=255)

                    aaCCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGc                                                                                  >  1:11274694/1‑101 (MQ=255)

                        ccAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCaa                                                                              <  1:4041162/101‑1 (MQ=255)

                        ccAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCaa                                                                              <  1:2152949/101‑1 (MQ=255)

                        ccAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCaa                                                                              >  1:14209962/1‑101 (MQ=255)

                         cAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAAt                                                                             >  1:6814169/1‑101 (MQ=255)

                         cAAAAAGGAGCAAAATGAATGTCACCATAATTTTTCCTGTCCCCAGCCCCAAAAGAAAATAAAAAAAAATTCCTAAAGCTAAGGGAAAAAATATCCCCAAt                                                                             <  1:6451996/101‑1 (MQ=255)

                           aTAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATaa                                                                           <  1:8958365/101‑1 (MQ=255)

                             aaGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAAt                                                                         >  1:8337573/1‑101 (MQ=255)

                              aGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAAtt                                                                        >  1:14039450/1‑101 (MQ=255)

                               ggAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTg                                                                       <  1:13761704/101‑1 (MQ=255)

                               ggAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTg                                                                       <  1:9581218/101‑1 (MQ=255)

                                  gCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCg                                                                    >  1:4592466/1‑101 (MQ=255)

                                        tgaatgTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAAt                                                              <  1:3608621/101‑1 (MQ=255)

                                        tgaatgTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAAt                                                              <  1:9666831/101‑1 (MQ=255)

                                            tgTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTg                                                          >  1:2713495/1‑101 (MQ=255)

                                             gTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGa                                                         >  1:7200761/1‑101 (MQ=255)

                                             gTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGa                                                         <  1:5551139/101‑1 (MQ=255)

                                              tCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGAt                                                        >  1:6168293/1‑101 (MQ=255)

                                               cAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGAtt                                                       <  1:3794363/101‑1 (MQ=255)

                                                  cATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTaaa                                                    <  1:5185689/101‑1 (MQ=255)

                                                   aTAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTaaaa                                                   >  1:11024588/1‑101 (MQ=255)

                                                   aTAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTaaaa                                                   >  1:10262239/1‑101 (MQ=255)

                                                    tAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAAt                                                  >  1:10853914/1‑101 (MQ=255)

                                                     aaTTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATc                                                 <  1:12975946/101‑1 (MQ=255)

                                                     aaTTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATc                                                 >  1:9073168/1‑101 (MQ=255)

                                                           tCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGaaa                                           >  1:13086359/1‑101 (MQ=255)

                                                            ccTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGaaaa                                          >  1:6986172/1‑101 (MQ=255)

                                                            ccTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGaaaa                                          >  1:1014853/1‑101 (MQ=255)

                                                              tGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAAc                                        <  1:1109546/101‑1 (MQ=255)

                                                              tGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAAc                                        <  1:10043141/101‑1 (MQ=255)

                                                               gTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACt                                       <  1:13622427/101‑1 (MQ=255)

                                                                tctcCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTg                                      >  1:4300493/1‑101 (MQ=255)

                                                                tctcCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTg                                      >  1:11692117/1‑101 (MQ=255)

                                                                tctcCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTg                                      >  1:12607887/1‑101 (MQ=255)

                                                                 ctcCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGc                                     <  1:8143300/101‑1 (MQ=255)

                                                                  tcCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGcc                                    <  1:11152152/101‑1 (MQ=255)

                                                                  tcCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGcc                                    >  1:6706429/1‑101 (MQ=255)

                                                                  tcCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGcc                                    >  1:14084096/1‑101 (MQ=255)

                                                                    cAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCAt                                  <  1:8622374/101‑1 (MQ=255)

                                                                      ggCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTa                                <  1:1235925/101‑1 (MQ=255)

                                                                      ggCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAAATGCCATTa                                >  1:2567632/1‑101 (MQ=255)

                                                                       gCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTaa                               >  1:7968714/1‑101 (MQ=255)

                                                                         cccAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGa                             <  1:328577/101‑1 (MQ=255)

                                                                           cAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACa                           >  1:10343233/1‑101 (MQ=255)

                                                                           cAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACa                           <  1:10972227/101‑1 (MQ=255)

                                                                           cAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACa                           <  1:11765370/101‑1 (MQ=255)

                                                                            aaaGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACAt                          >  1:4118220/1‑101 (MQ=255)

                                                                            aaaGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACAt                          >  1:624192/1‑101 (MQ=255)

                                                                            aaaGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACAt                          >  1:11216687/1‑101 (MQ=255)

                                                                            aaaGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACAt                          >  1:11488324/1‑101 (MQ=255)

                                                                            aaaGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACAt                          <  1:8840992/101‑1 (MQ=255)

                                                                              aGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTg                        <  1:13456668/101‑1 (MQ=255)

                                                                                tAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGaa                      >  1:1316966/1‑101 (MQ=255)

                                                                                tAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGaa                      >  1:12098636/1‑101 (MQ=255)

                                                                                 aaaTAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAg                     >  1:9247444/1‑101 (MQ=255)

                                                                                  aataatAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGt                    >  1:14316556/1‑101 (MQ=255)

                                                                                  aataatAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGt                    >  1:1745750/1‑101 (MQ=255)

                                                                                    taataaAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTg                  >  1:6058954/1‑101 (MQ=255)

                                                                                    taataaAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTg                  >  1:1498172/1‑101 (MQ=255)

                                                                                      ataaAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCt                >  1:13604546/1‑101 (MQ=255)

                                                                                      ataaAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCt                <  1:5318908/101‑1 (MQ=255)

                                                                                         aaaaaTTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGtt             <  1:12693691/101‑1 (MQ=255)

                                                                                         aaaaaTTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGtt             <  1:745524/101‑1 (MQ=255)

                                                                                          aaaaTTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGttt            <  1:5824387/101‑1 (MQ=255)

                                                                                           aaaTTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGtttt           >  1:189547/1‑101 (MQ=255)

                                                                                            aaTTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGttttt          >  1:7338024/1‑101 (MQ=255)

                                                                                            aaTTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGttttt          >  1:10591144/1‑101 (MQ=255)

                                                                                             aTTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTta         <  1:5020950/101‑1 (MQ=255)

                                                                                             aTTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTta         <  1:12400006/101‑1 (MQ=255)

                                                                                              ttCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTtat        <  1:5708909/101‑1 (MQ=255)

                                                                                              ttCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTtat        >  1:3922517/1‑101 (MQ=255)

                                                                                              ttCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTtat        <  1:13334785/101‑1 (MQ=255)

                                                                                               tCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTtata       >  1:852612/1‑101 (MQ=255)

                                                                                                ccTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTTATAc      >  1:4390003/1‑101 (MQ=255)

                                                                                                ccTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTTATAc      <  1:12889268/101‑1 (MQ=255)

                                                                                                  tAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTTATACAt    >  1:2050800/1‑101 (MQ=255)

                                                                                                  tAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTTATACAt    <  1:13991988/101‑1 (MQ=255)

                                                                                                    aaGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTTATACATAg  >  1:592641/1‑101 (MQ=255)

GCTACACCCACAATAACCACAACCCCAATAAGGAGCTCAATGAATGTCAGCATAATTTTTCCTGTCTCCAGGCCCCAAAGTAAATAATAAAAAATTCCTAAAGCTTAAGGAAAAAATATGCCCAATAAATTGGCGATGAATGCTGATTAAAATCAAGAAAAACTGCCATTAAGACATTGAAGTTGCTGTTTTTATACATAG  >  NC_007779/656338‑656538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.