BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	1980091 =	1 (0.000)	190 (0.700)	90/180	NT	99.5%	intergenic (‑171/+264)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein
*	?	NC_007779	1980209 =	NA (NA)	190 (0.700)	90/180	NT	99.5%	intergenic (‑289/+146)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein

Only 100 of 275 total aligned reads displayed.

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAA  >  NC_007779/1980109‑1980304

CGACGCATCTGTTCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACTCTCAATTACTT‑AAg                                                                                                 >  1:3850146‑M1/1‑101 (MQ=255)

 GACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAgg                                                                                                >  1:1572058‑M1/1‑101 (MQ=255)

  aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑aagga                                                                                               <  1:413367/101‑1 (MQ=255)

  aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑aagga                                                                                               <  1:3020772/101‑1 (MQ=255)

  aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑aagga                                                                                               <  1:8845835/101‑1 (MQ=255)

   cGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑aaggaa                                                                                              >  1:2151112/1‑101 (MQ=255)

     cAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑aaggaagg                                                                                            >  1:6462/1‑101 (MQ=255)

      aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGt                                                                                           <  1:1084318/101‑1 (MQ=255)

       cccctccgttgtatgtgcgtgtagtgacgagtacagttgcgtcgatttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTg                                                                                          >  1:13579903‑M2/49‑101 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCg                                                                                        >  1:8444781/1‑101 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCg                                                                                        >  1:6015279/1‑101 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCg                                                                                        >  1:14148297/1‑101 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGa                                                                                       <  1:12028374/101‑1 (MQ=255)

           tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGaa                                                                                      >  1:10126811/1‑101 (MQ=255)

           tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGaa                                                                                      <  1:9882278/101‑1 (MQ=255)

            aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAAt                                                                                     >  1:2405408/1‑101 (MQ=255)

              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATaa                                                                                   <  1:1664820/101‑1 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAg                                                                                  <  1:7411173/101‑1 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAg                                                                                  >  1:12743671/1‑101 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAg                                                                                  >  1:12671098/1‑101 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAg                                                                                  >  1:11762634/1‑101 (MQ=255)

                  cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCgg                                                                               <  1:4643896/101‑1 (MQ=255)

                   aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCggg                                                                              >  1:6220863/1‑101 (MQ=255)

                    cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCgggg                                                                             <  1:4188512/101‑1 (MQ=255)

                     tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGa                                                                            <  1:3717318/101‑1 (MQ=255)

                     tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGa                                                                            <  1:13105709/101‑1 (MQ=255)

                      acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGaa                                                                           <  1:6509279/101‑1 (MQ=255)

                      acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGaa                                                                           >  1:1104784/1‑101 (MQ=255)

                       cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGaaa                                                                          >  1:11579484/1‑101 (MQ=255)

                        cgtgtagtgacgagtacagttgcgtcgatttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAt                                                                         >  1:5200932‑M2/32‑101 (MQ=255)

                        acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAt                                                                         >  1:10321300/1‑101 (MQ=255)

                         cgaacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATACAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAtt                                                                        >  1:10549658/4‑101 (MQ=255)

                         cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AGGGAAGGTGCGAATAAGCGGGGAAAtt                                                                        >  1:3511164/1‑101 (MQ=255)

                         cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAtt                                                                        >  1:27591/1‑101 (MQ=255)

                          gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                       >  1:8995868/1‑101 (MQ=255)

                            ccaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAttctt                                                                     <  1:4032629/100‑1 (MQ=255)

                            acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAttctt                                                                     >  1:13638200/1‑101 (MQ=255)

                            acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAttctt                                                                     >  1:7263987/1‑101 (MQ=255)

                             caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                    <  1:1507847/101‑1 (MQ=255)

                             caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                    <  1:12925996/101‑1 (MQ=255)

                              acaCAAGGGGGGGGGGCGGCTTTTTTAAATAAGGCGGAAGGCAGATCACAAAAACCCCCAAATTCCTA‑AGGGAAGGTGCAAATAAGCGGGGAAATtcttct                                                                   <  1:12268241/99‑1 (MQ=9)

                                aCAACGGAGGGGGGCTGCTATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                                                                 <  1:13748005/101‑1 (MQ=255)

                                aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACCCTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                                                                 <  1:3263718/101‑1 (MQ=255)

                                aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                                                                 >  1:8754482/1‑101 (MQ=255)

                                 cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                >  1:12520361/1‑101 (MQ=255)

                                 aagggggggggggCGGCATTTTTAAATAAGGCGTGATAAAGATCACAAAAACCCCTCAATTCCTT‑AAGGAGGGTGCAAATAAGCGGGGAAATTCTTCTCgg                                                                <  1:803290/94‑1 (MQ=16)

                                  aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGc                                                               >  1:329538/1‑101 (MQ=255)

                                    gggggggggtCTGCTATTTTAAAAAGTGCGTAATGCAAATCACAAAAAACACAAAATTATTA‑AGGGAGGGTGCAAATAAGGGGGGAAATTCTTCTCGGCTg                                                             <  1:7018505/97‑1 (MQ=12)

                                    cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGGAGATCACACAAAACACTCAATTACTT‑CAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                             >  1:5123084/1‑101 (MQ=255)

                                      gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                                                           >  1:259501/1‑101 (MQ=255)

                                       aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACt                                                          >  1:2334373/1‑101 (MQ=255)

                                       aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACt                                                          >  1:11958421/1‑101 (MQ=255)

                                          ggggcgtctaTTTTCAATAATGTTTGATGAAAACCACAAAAACCAC‑AAAATACTTGAAGAACGGTCAAAATACGCGGGGAATTTCTTCTCGGCTGACTCAg                                                       <  1:668192/92‑1 (MQ=2)

                                          ggggCTGCGATTTTCAATAATGCTTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg                                                       <  1:911309/101‑1 (MQ=255)

                                          ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg                                                       >  1:1782175/1‑101 (MQ=255)

                                            tgcgtcgatttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc                                                     >  1:3479028‑M2/12‑101 (MQ=255)

                                               tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt                                                  >  1:7074562/1‑101 (MQ=255)

                                               tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt                                                  >  1:2054855/1‑101 (MQ=255)

                                                 cgatttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc                                                >  1:7054418‑M2/7‑101 (MQ=255)

                                                 cgatttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc                                                >  1:12463880‑M2/7‑101 (MQ=255)

                                                 cgatttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc                                                >  1:12115812‑M2/7‑101 (MQ=255)

                                                   atttTCAATAATGCGTGATGCAGATCACACAAAATACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTACTCCGCTGACTCAGtcatttcat                                              >  1:5622226‑M2/5‑101 (MQ=255)

                                                   atttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                              >  1:738069‑M2/5‑101 (MQ=255)

                                                    tttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt                                             >  1:13454278‑M2/4‑101 (MQ=255)

                                                     ttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTcatttcattt                                            <  1:6440056‑M2/99‑1 (MQ=255)

                                                      tTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc                                           >  1:5866403‑M2/2‑101 (MQ=255)

                                                      tTCAATAATGCGTGATGCAGATCACACAAAACACCCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc                                           >  1:3154618‑M2/2‑101 (MQ=255)

                                                       tCAATAATGCGTGATGCAGATCCCACAAAACACTCAATAATTT‑AGGGAAGGTCCGAATAAGAGTGGCAATTCTTCTTGACTGACTCAGtcatttcatgtat                                          >  1:5074970/1‑97 (MQ=18)

                                                       tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttct                                          >  1:4900849/1‑101 (MQ=255)

                                                        cAATATTGCGTGATACATTTCACACAAAACGCTCAATTACTA‑AAGGAAGTTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                         <  1:2011980/101‑1 (MQ=18)

                                                          ataatGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                       >  1:4540430/1‑101 (MQ=255)

                                                            aatGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg                                     >  1:5765214/1‑101 (MQ=255)

                                                             atGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                    >  1:2946269/1‑101 (MQ=255)

                                                             atGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                    >  1:13307748/1‑101 (MQ=255)

                                                             atGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                    >  1:14399661/1‑101 (MQ=255)

                                                              tGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt                                   >  1:407315/1‑101 (MQ=255)

                                                               gCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                  >  1:11480238/1‑101 (MQ=255)

                                                               gCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                  >  1:428427/1‑101 (MQ=255)

                                                               gCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                  >  1:5486239/1‑101 (MQ=255)

                                                                cGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                 >  1:5388419/1‑101 (MQ=255)

                                                                  tGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg                               >  1:4747374/1‑101 (MQ=255)

                                                                    aTGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGcc                             >  1:8572542/1‑101 (MQ=255)

                                                                     tGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCg                            >  1:6103292/1‑101 (MQ=255)

                                                                       cAGATCACACAAAACACTCAATTACTT‑AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTCCATGTTTGAGCCGAt                          >  1:13883046/1‑101 (MQ=255)

                                                                         gATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                        >  1:11669102/1‑101 (MQ=255)

                                                                              cacaAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                   >  1:8648614/1‑101 (MQ=255)

                                                                                caAAACACTCAATTACTT‑AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTcc                 >  1:1855125/1‑101 (MQ=255)

                                                                                caAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTcc                 >  1:6871349/1‑101 (MQ=255)

                                                                                caAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTcc                 >  1:4432156/1‑101 (MQ=255)

                                                                                 aaaaCACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                >  1:3134287/1‑101 (MQ=255)

                                                                                 aaaaCACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                >  1:756689/1‑101 (MQ=255)

                                                                                      tcTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa           >  1:9240938/2‑101 (MQ=39)

                                                                                      acTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa           >  1:11387298/1‑101 (MQ=40)

                                                                                         cAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAATCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc        >  1:7682154/1‑101 (MQ=37)

                                                                                          aaTTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc       >  1:10026122/1‑101 (MQ=35)

                                                                                           aTTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt      >  1:10747848/1‑101 (MQ=34)

                                                                                             tACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg    >  1:1379176/1‑101 (MQ=32)

                                                                                             tACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg    >  1:7324190/1‑101 (MQ=32)

                                                                                              aCTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa   >  1:9431409/1‑101 (MQ=31)

                                                                                               cTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa  >  1:13021132/1‑101 (MQ=11)

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAA  >  NC_007779/1980109‑1980304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.