BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	1980105 =	29 (0.110)	7 (0.030)	5/168	NT	6.4%	intergenic (‑185/+250)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein
*	?	NC_007779	1980164 =	179 (0.710)	7 (0.030)	5/168	NT	6.4%	intergenic (‑244/+191)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein

Only 100 of 325 total aligned reads displayed.

CAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCT  >  NC_007779/1980064‑1980264

gaatttccccgcttattcgcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACCCGTCTCTACACGCACATACAACGGAGGGGGGCTGCGAtttt                                                                                                       >  1:9103937‑M1/28‑101 (MQ=255)

   tttccccgcttattcgcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCaa                                                                                                    >  1:12976442‑M1/25‑101 (MQ=255)

   tttccccgcttattcgcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCaa                                                                                                    <  1:4112586‑M1/77‑1 (MQ=255)

          gcttattcgcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCg                                                                                             >  1:7963439‑M1/18‑101 (MQ=255)

          gcttattcgcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCg                                                                                             >  1:1801908‑M1/18‑101 (MQ=255)

           cttattcgcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGt                                                                                            >  1:11190150‑M1/17‑101 (MQ=255)

            ttattcgcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTg                                                                                           <  1:13151152‑M1/86‑1 (MQ=255)

              attcgcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGAt                                                                                         <  1:12313264‑M1/88‑1 (MQ=255)

              attcgcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGAt                                                                                         <  1:2034698‑M1/88‑1 (MQ=255)

              attcgcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGAt                                                                                         <  1:1213148‑M1/88‑1 (MQ=255)

               ttcgcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATg                                                                                        >  1:12841139‑M1/13‑101 (MQ=255)

               ttcgcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATg                                                                                        <  1:3903342‑M1/89‑1 (MQ=255)

                 cgcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCa                                                                                      <  1:12548050‑M1/91‑1 (MQ=255)

                  gcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCCCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAg                                                                                     <  1:1535263‑M1/92‑1 (MQ=255)

                  gcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAg                                                                                     <  1:12002648‑M1/92‑1 (MQ=255)

                  gcaccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAg                                                                                     >  1:4137705‑M1/10‑101 (MQ=255)

                   caccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGa                                                                                    <  1:10536314‑M1/93‑1 (MQ=255)

                     ccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATc                                                                                  >  1:1386390‑M1/7‑101 (MQ=255)

                     ccttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATc                                                                                  <  1:6348456‑M1/95‑1 (MQ=255)

                      cttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATca                                                                                 >  1:12417204‑M1/6‑101 (MQ=255)

                       ttccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATcac                                                                                <  1:5046121‑M1/97‑1 (MQ=255)

                        tccCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATcaca                                                                               >  1:6774814‑M1/4‑101 (MQ=255)

                            tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACaaa                                                                           <  1:12737459/101‑1 (MQ=255)

                            tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACaaa                                                                           >  1:720814/1‑101 (MQ=255)

                             aaGATTTTACATAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACaaaa                                                                          >  1:9769128/1‑101 (MQ=255)

                                 tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACt                                                                      >  1:2218118/1‑101 (MQ=255)

                                   tttCCTAAATTGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCAGCGATTTTCAATAATACGTGATGCAGATCACACAAAACACTCa                                                                    >  1:11709547/1‑101 (MQ=255)

                                   tttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCa                                                                    >  1:2466500/1‑101 (MQ=255)

                                    ttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCaa                                                                   >  1:10112519/1‑101 (MQ=255)

                                      ccTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAAtt                                                                 >  1:167699/1‑101 (MQ=255)

                                        tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTAc                                                               >  1:6133685/1‑101 (MQ=255)

                                        tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTAc                                                               <  1:8842533/101‑1 (MQ=255)

                                        tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTAc                                                               <  1:474417/101‑1 (MQ=255)

                                         AAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACt                                                              <  1:2068069‑M1/101‑1 (MQ=255)

                                         AAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACt                                                              >  1:12655677‑M1/1‑101 (MQ=255)

                                         AAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACt                                                              >  1:9450767‑M1/1‑101 (MQ=255)

                                           ATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑a                                                           >  1:5309515‑M1/1‑101 (MQ=255)

                                           ATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑a                                                           <  1:9259234‑M1/101‑1 (MQ=255)

                                           ATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑a                                                           >  1:12484471‑M1/1‑101 (MQ=255)

                                            TCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑aa                                                          >  1:1573092‑M1/1‑101 (MQ=255)

                                            TCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑aa                                                          <  1:13528245‑M1/101‑1 (MQ=255)

                                            TCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑aa                                                          <  1:1381862‑M1/101‑1 (MQ=255)

                                             CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAg                                                         >  1:349397‑M1/1‑101 (MQ=255)

                                              GACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAgg                                                        <  1:10872045‑M1/101‑1 (MQ=255)

                                              GACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAgg                                                        <  1:5840878‑M1/101‑1 (MQ=255)

                                              GACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAgg                                                        >  1:6222029‑M1/1‑101 (MQ=255)

                                               aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑aagga                                                       <  1:3020772/101‑1 (MQ=255)

                                                cGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑aaggaa                                                      >  1:2151112/1‑101 (MQ=255)

                                                 gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑aaggaag                                                     <  1:8512372/101‑1 (MQ=255)

                                                   aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGt                                                   <  1:5089824/101‑1 (MQ=255)

                                                   aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGt                                                   >  1:7051094/1‑101 (MQ=255)

                                                   aaCGGTCCTCGCCCCCACACGCACAGACACGGGGGGGGGGCTGCGATTTTAAACAAGGCGGGAGGCAAATCACACAAACCCCCCATTTCCTT‑AGGGAGGGt                                                   <  1:931559/101‑1 (MQ=255)

                                                    aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTg                                                  >  1:10662128/1‑101 (MQ=255)

                                                    aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTg                                                  <  1:11866482/101‑1 (MQ=255)

                                                    aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTg                                                  >  1:5190845/1‑101 (MQ=255)

                                                     cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGc                                                 >  1:3584697/1‑101 (MQ=255)

                                                      tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCg                                                >  1:6015279/1‑101 (MQ=255)

                                                      tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCg                                                >  1:14148297/1‑101 (MQ=255)

                                                        tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGaa                                              <  1:13410299/101‑1 (MQ=255)

                                                         aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAAt                                             <  1:8046573/101‑1 (MQ=255)

                                                         aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAAt                                             <  1:4026015/101‑1 (MQ=255)

                                                          cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATa                                            >  1:2868612/1‑101 (MQ=255)

                                                          cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATa                                            >  1:1858750/1‑101 (MQ=255)

                                                            cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAg                                          <  1:7411173/101‑1 (MQ=255)

                                                              tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCg                                        >  1:13615392/1‑101 (MQ=255)

                                                                atgtgcgtgtagtgacgagtacagttgcgtcgatttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCggg                                      >  1:10370985‑M2/37‑101 (MQ=255)

                                                                 cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCgggg                                     >  1:5890701/1‑101 (MQ=255)

                                                                  tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGa                                    >  1:5383954/1‑101 (MQ=255)

                                                                  tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGa                                    >  1:4035324/1‑101 (MQ=255)

                                                                  gtgcgtgtagtgacgagtacagtttcgtcgatttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGa                                    >  1:13104197‑M2/35‑101 (MQ=255)

                                                                   acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AGGGAAGGTGCGAATAAGCGGGGaa                                   >  1:7267715/1‑101 (MQ=255)

                                                                   acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGaa                                   >  1:1104784/1‑101 (MQ=255)

                                                                    cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGaaa                                  >  1:11579484/1‑101 (MQ=255)

                                                                     cgtgtagtgacgagtacagttgcgtcgatttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAt                                 >  1:255125‑M2/32‑101 (MQ=255)

                                                                      cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAtt                                >  1:3748906/1‑101 (MQ=255)

                                                                       gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAttc                               <  1:1443577/101‑1 (MQ=255)

                                                                          caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAttcttc                            <  1:12925996/101‑1 (MQ=255)

                                                                           aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATtcttct                           >  1:6511175/1‑101 (MQ=255)

                                                                            tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGCAATTCTtctc                          >  1:7647923/1‑101 (MQ=255)

                                                                             aCAACGGAGGGGGGCTGCTATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                         <  1:13748005/101‑1 (MQ=255)

                                                                             aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                         >  1:3150140/1‑101 (MQ=255)

                                                                             aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAAttctaatag                         >  1:550584/1‑96 (MQ=255)

                                                                             aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                         >  1:8754482/1‑101 (MQ=255)

                                                                               aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGc                       >  1:329538/1‑101 (MQ=255)

                                                                                aCGGAGGGGGGCTGCGATTTTAAATAATGCGTGATGCAGATCACAAAAAACACTAAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                      <  1:10276571/101‑1 (MQ=255)

                                                                                  ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGa                    >  1:4339777/1‑101 (MQ=255)

                                                                                   gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                   <  1:4583944/101‑1 (MQ=255)

                                                                                   gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                   >  1:259501/1‑101 (MQ=255)

                                                                                    aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACt                  >  1:2334373/1‑101 (MQ=255)

                                                                                       ggggcgtctaTTTTCAATAATGTTTGATGAAAACCACAAAAACCAC‑AAAATACTTGAAGAACGGTCAAAATACGCGGGGAATTTCTTCTCGGCTGACTCAg               <  1:668192/92‑1 (MQ=2)

                                                                                          gttccGATTTTAAATAATGCGTCAGGGAGAGAACACAAAACAAAAAATGGGTA‑AAGGACCTTAAAAAGAAGCGGGGAAATCTTTCTCGGCTGACTCAGtca            <  1:9005725/97‑1 (MQ=2)

                                                                                            tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt          >  1:11305609/1‑101 (MQ=255)

                                                                                            tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt          >  1:7074562/1‑101 (MQ=255)

                                                                                              cgatttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc        >  1:6451233‑M2/7‑101 (MQ=255)

                                                                                              cgatttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc        >  1:4881590‑M2/7‑101 (MQ=255)

                                                                                               gatttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca       >  1:5135264‑M2/6‑101 (MQ=255)

                                                                                                atttTCAATAATGCGTGATGCAGATCACACAAAATACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTACTCCGCTGACTCAGtcatttcat      >  1:5622226‑M2/5‑101 (MQ=255)

                                                                                                  ttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTcatttcattt    <  1:6440056‑M2/99‑1 (MQ=255)

                                                                                                  ttTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGCAAATTCTTCTCGGCTGACTCAGTcatttcattt    >  1:1221918‑M2/3‑101 (MQ=255)

                                                                                                   tTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc   >  1:3163564‑M2/2‑101 (MQ=255)

CAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTT‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCT  >  NC_007779/1980064‑1980264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.