New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 = 35127593 (0.010)332 (0.930) 140/178 NT 99.1% coding (535/1026 nt) cytR DNA‑binding transcriptional dual regulator
?NC_007779 = 3744262 NA (NA)intergenic (‑90/+31) insC/yidZ IS2 element protein/DNA‑binding transcriptional regulator

Only 100 of 838 total aligned reads displayed.

TCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCG  >  NC_007779/3512659‑3512859
                                                                                                    |                                                                                                    
         gATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggcc                                                                                             >  1:12067687‑M1/1‑92 (MQ=255)
          atcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCa                                                                                            >  1:4124682‑M2/85‑101 (MQ=255)
          aTGGTGATGGCGAACGAATTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccc                                                                                            >  1:2615723‑M1/1‑91 (MQ=255)
              ctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAggg                                                                                        >  1:5529926‑M2/81‑101 (MQ=255)
              ctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAggg                                                                                        >  1:13091313‑M2/81‑101 (MQ=255)
               tcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGc                                                                                       <  1:10264195‑M2/22‑1 (MQ=255)
                 gccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCAt                                                                                     <  1:9837433‑M2/24‑1 (MQ=255)
                  ccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATa                                                                                    >  1:12387146‑M2/77‑101 (MQ=255)
                   cacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATaa                                                                                   <  1:15445258‑M2/26‑1 (MQ=255)
                   cacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATaa                                                                                   >  1:13691567‑M2/76‑101 (MQ=255)
                    acgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATaaa                                                                                  >  1:17059572‑M2/75‑101 (MQ=255)
                    acgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATaaa                                                                                  <  1:11302052‑M2/27‑1 (MQ=255)
                      gggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACg                                                                                <  1:3685774‑M2/29‑1 (MQ=255)
                      aacgaaTTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctcca                                                                                <  1:3194388‑M1/101‑23 (MQ=255)
                      aacgaaTTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctcca                                                                                <  1:16850358‑M1/101‑23 (MQ=255)
                       ggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACgg                                                                               <  1:10696406‑M2/30‑1 (MQ=255)
                         aatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGAt                                                                             <  1:6972584‑M2/32‑1 (MQ=255)
                         aatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGAt                                                                             <  1:6123480‑M2/32‑1 (MQ=255)
                          aaTTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagaca                                                                            >  1:12961883‑M1/1‑75 (MQ=255)
                           aTTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaa                                                                           >  1:14217465‑M1/1‑74 (MQ=255)
                             tctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACTGATTGGc                                                                         <  1:18102432‑M2/36‑1 (MQ=255)
                              tGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaacca                                                                        >  1:3819683‑M1/1‑71 (MQ=255)
                              ctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCt                                                                        <  1:1094785‑M2/37‑1 (MQ=255)
                               tgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTg                                                                       >  1:2948016‑M2/64‑101 (MQ=255)
                               gCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaa                                                                       >  1:15920939‑M1/1‑70 (MQ=255)
                               gCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaa                                                                       <  1:14082158‑M1/101‑32 (MQ=255)
                                gcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGt                                                                      >  1:17350936‑M2/63‑101 (MQ=255)
                                cACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaat                                                                      >  1:10532710‑M1/1‑69 (MQ=255)
                                  ccGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatat                                                                    <  1:12757016‑M1/101‑35 (MQ=255)
                                  ccGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatat                                                                    <  1:18508299‑M1/101‑35 (MQ=255)
                                    cagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAg                                                                  >  1:5082258‑M2/59‑101 (MQ=255)
                                      agctggagctgCCTACAGTTCATATCGACAATCTGACCGCCGCATTTTATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcact                                                                <  1:976006‑M1/101‑39 (MQ=255)
                                         tggagctgCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaa                                                             >  1:2453974‑M1/1‑60 (MQ=255)
                                          gcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTc                                                            >  1:3961071‑M2/53‑101 (MQ=255)
                                           gagctgCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaat                                                           >  1:2095059‑M1/1‑58 (MQ=255)
                                             gctgCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataa                                                         >  1:7472253‑M1/1‑56 (MQ=255)
                                             gctgCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataa                                                         <  1:16910336‑M1/101‑46 (MQ=255)
                                              gtaatgggttaagtgataacagatgtctggacatataggggcaaatgcAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGa                                                        <  1:16511016‑M2/53‑1 (MQ=255)
                                              gtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGa                                                        >  1:2815101‑M2/49‑101 (MQ=255)
                                              ctgCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataag                                                        >  1:15759624‑M1/1‑55 (MQ=255)
                                              ctgCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataag                                                        <  1:6012362‑M1/101‑47 (MQ=255)
                                               taatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGaa                                                       >  1:5339840‑M2/48‑101 (MQ=255)
                                               taatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGaa                                                       >  1:17471345‑M2/48‑101 (MQ=255)
                                               taatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGaa                                                       <  1:4546598‑M2/54‑1 (MQ=255)
                                                gCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtg                                                      <  1:16149477‑M1/101‑49 (MQ=255)
                                                 atgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAaga                                                     >  1:4943368‑M2/46‑101 (MQ=255)
                                                     cAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagt                                                 >  1:14927021‑M1/1‑48 (MQ=255)
                                                      ttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTCGCTGTATAGCCGGTCCCGAAGAGATGc                                                >  1:8560859‑M2/41‑101 (MQ=255)
                                                      aGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtc                                                >  1:11924131‑M1/1‑47 (MQ=255)
                                                       taagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGcc                                               <  1:9554557‑M2/62‑1 (MQ=255)
                                                          gtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCt                                            <  1:11195321‑M2/65‑1 (MQ=255)
                                                          gtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCt                                            >  1:6578213‑M2/37‑101 (MQ=255)
                                                           tgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCtg                                           <  1:16031688‑M2/66‑1 (MQ=255)
                                                            tatCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaata                                          <  1:15254396‑M1/101‑61 (MQ=255)
                                                            tatCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaata                                          >  1:6291462‑M1/1‑41 (MQ=255)
                                                             ataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCtgtg                                         <  1:1178138‑M2/68‑1 (MQ=255)
                                                               aacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTc                                       >  1:14527241‑M2/32‑101 (MQ=255)
                                                                 aCAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagt                                     >  1:8723836‑M1/1‑36 (MQ=255)
                                                                  cAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtt                                    >  1:17730841‑M1/1‑35 (MQ=255)
                                                                   aaTCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttt                                   >  1:17574841‑M1/1‑34 (MQ=255)
                                                                    aTCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttt                                  >  1:8890474‑M1/1‑33 (MQ=255)
                                                                    aTCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttt                                  >  1:18332175‑M1/1‑33 (MQ=255)
                                                                      gtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCg                                >  1:15076859‑M2/25‑101 (MQ=255)
                                                                       tctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGc                               <  1:13588499‑M2/78‑1 (MQ=255)
                                                                        gACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttcatactagtttttaga                              >  1:12565160‑M1/1‑29 (MQ=255)
                                                                        gACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttaga                              <  1:8996096‑M1/101‑73 (MQ=255)
                                                                           gaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGc                           <  1:11535489‑M2/82‑1 (MQ=255)
                                                                           cgccgcATTTGATGCAGTAAATTATTagactggccccctgaagctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagacta                           <  1:3497530‑M1/101‑76 (MQ=255)
                                                                            gccgcATTTGATGCAATAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactag                          <  1:10187353‑M1/101‑77 (MQ=255)
                                                                            aaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCa                          <  1:6514000‑M2/83‑1 (MQ=255)
                                                                            aaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCa                          >  1:2280863‑M2/19‑101 (MQ=255)
                                                                              atataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGCGTCACTACCGCCTGCAAg                        >  1:2341778‑M2/17‑101 (MQ=255)
                                                                               tataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAgg                       >  1:8425887‑M2/16‑101 (MQ=255)
                                                                               tataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAgg                       >  1:16698470‑M2/16‑101 (MQ=255)
                                                                                cATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcat                      >  1:4236086‑M1/1‑21 (MQ=255)
                                                                                  tttGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattg                    >  1:9271444‑M1/1‑19 (MQ=255)
                                                                                       caaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTc               >  1:5685956‑M2/8‑101 (MQ=255)
                                                                                       caaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTc               <  1:8083107‑M2/94‑1 (MQ=255)
                                                                                        aaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCa              <  1:17955384‑M2/95‑1 (MQ=255)
                                                                                         aatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAg             >  1:5253816‑M2/6‑101 (MQ=255)
                                                                                           aacagtgaatagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacaga           <  1:684230‑M1/92‑92 (MQ=255)
                                                                                              AATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCt        <  1:15627795‑M2/101‑1 (MQ=255)
                                                                                              AATTATTTATATGAGCAAGGGCATAAACGGATTGGCCGTATAGCCGGTCCCGAAGAGATGCCGCTGCGTCACTACCGCCTGCAAGGCAATGTTCAGGCGCt        >  1:8289263‑M2/1‑101 (MQ=255)
                                                                                               gtgaatagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgat       <  1:14724459‑M1/96‑96 (MQ=255)
                                                                                               gtgaatagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgat       <  1:7733660‑M1/96‑96 (MQ=255)
                                                                                                tgaatagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgatt      <  1:1081259‑M1/97‑97 (MQ=255)
                                                                                                 tatttatATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCg     <  1:16349545/101‑1 (MQ=255)
                                                                                                 tatttatATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCg     >  1:1723771/1‑101 (MQ=255)
                                                                                                  atttatATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGt    >  1:3340109/1‑101 (MQ=255)
                                                                                                   tttatATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTc   >  1:13443377/1‑101 (MQ=255)
                                                                                                   tttatATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTc   <  1:3084636/101‑1 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  <  1:7881968‑M1/101‑101 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  <  1:7300121‑M1/101‑101 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  >  1:7083958‑M1/1‑1 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  >  1:13948719‑M1/1‑1 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  <  1:14340648‑M1/101‑101 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  >  1:1107080‑M1/1‑1 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  <  1:5814495‑M1/101‑101 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  >  1:4788338‑M1/1‑1 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  >  1:10054175‑M1/1‑1 (MQ=255)
                                                                                                    |                                                                                                    
TCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCG  >  NC_007779/3512659‑3512859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.