mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 34,111 | 1 | .→T | 2.8% | 49.9 ‑1.9 ‑0.4 | 434 | intergenic (+73/‑189) | carB/caiF | carbamoyl‑phosphate synthase large subunit/DNA‑binding transcriptional activator |
| * | NC_007779 | 1,371,749 | 1 | .→T | 2.3% | 39.8 ‑0.3 ‑0.8 | 439 | intergenic (+32/‑181) | pspE/ycjM | thiosulfate:cyanide sulfurtransferase/glucosyltransferase |
| * | NC_007779 | 2,783,852 | 1 | .→A | 0.8% | 10.9 ‑2.1 ‑0.1 | 484 | intergenic (‑185/+566) | ypjC/ileY | hypothetical protein/tRNA‑Ile |
| * | NC_007779 | 4,414,724 | 1 | .→T | 0.9% | 10.9 0.0 ‑0.0 | 435 | intergenic (+38/‑89) | rlmB/yjfI | 23S rRNA (Gm2251)‑methyltransferase/hypothetical protein |
| * | NC_007779 | 4,016,769 | 1 | .→C | 0.7% | 7.1 ‑2.6 ‑0.0 | 444 | coding (248/384 nt) | yhhH | hypothetical protein |
| * | NC_007779 | 3,746,911 | 0 | G→A | 100.0% | 3.4 | 1 | intergenic (‑509/‑68) | mdtL/insH | multidrug efflux system protein/IS5 element protein |
| * | NC_007779 | 2,287,403 | 1 | .→A | 0.5% | 2.2 ‑0.7 ‑0.5 | 417 | intergenic (‑122/‑60) | yejK/yejL | nucleotide associated protein/hypothetical protein |
| * | NC_007779 | 2,306,988 | 1 | .→G | 0.5% | 2.2 ‑2.0 ‑0.0 | 407 | intergenic (‑157/‑251) | napF/eco | ferredoxin‑type protein/ecotin |
| * | NC_007779 | 3,671,123 | 1 | .→A | 0.5% | 2.2 ‑1.6 ‑1.3 | 404 | coding (73/1266 nt) | rhlB | ATP‑dependent RNA helicase |
| * | NC_007779 | 4,312,373 | 1 | .→T | 0.5% | 2.2 ‑0.7 ‑0.1 | 417 | coding (105/1029 nt) | alsK | D‑allose kinase |
| * | NC_007779 | 4,342,787 | 1 | .→A | 0.5% | 2.2 0.0 ‑1.3 | 415 | intergenic (‑180/+145) | adiY/adiA | DNA‑binding transcriptional activator/biodegradative arginine decarboxylase |
| * | NC_007779 | 1,155,634 | 1 | .→A | 0.5% | 2.1 ‑0.7 ‑0.2 | 420 | coding (758/810 nt) | pabC | 4‑amino‑4‑deoxychorismate lyase |
| * | NC_007779 | 1,881,068 | 1 | .→T | 0.5% | 2.1 ‑1.7 ‑0.2 | 414 | intergenic (‑99/+49) | yeaQ/yoaG | inner membrane protein/hypothetical protein |
| * | NC_007779 | 3,059,420 | 1 | .→T | 0.5% | 2.1 ‑1.6 ‑0.1 | 408 | intergenic (+118/‑86) | argP/yliK | DNA‑binding transcriptional activator/methylmalonyl‑CoA mutase |
| * | NC_007779 | 4,036,181 | 1 | .→A | 0.4% | 2.1 ‑1.5 ‑0.0 | 452 | coding (10/1494 nt) | ftsY | fused Signal Recognition Particle (SRP) receptor |
| * | NC_007779 | 3,773,982 | 1 | .→T | 0.5% | 2.0 0.0 ‑0.4 | 442 | intergenic (+36/‑160) | ibpB/yidE | heat shock chaperone/transporter |
| * | NC_007779 | 3,789,662 | 1 | .→T | 0.4% | 2.0 0.0 ‑0.1 | 468 | intergenic (+49/‑27) | ilvN/uhpA | acetolactate synthase I, small subunit/DNA‑binding response regulator in two‑component regulatory system wtih UhpB |
| * | NC_007779 | 3,362,866 | 1 | .→A | 0.5% | 1.5 0.0 ‑0.1 | 437 | coding (205/2382 nt) | yhcD | outer membrane protein |
| * | NC_007779 | 1,301,064 | 0 | C→G | 100.0% | 1.3 | 1 | intergenic (+242/‑66) | ychE/insC | inner membrane protein/IS2 element protein |
| * | NC_007779 | 2,087,589 | 1 | .→A | 0.4% | 1.3 0.0 ‑0.0 | 452 | coding (74/1059 nt) | yeeE | inner membrane protein |
| * | NC_007779 | 1,301,094 | 0 | T→C | 100.0% | 1.2 | 1 | intergenic (+272/‑36) | ychE/insC | inner membrane protein/IS2 element protein |
| * | NC_007779 | 4,416,420 | 1 | .→T | 0.4% | 0.9 ‑1.4 ‑0.0 | 460 | coding (439/660 nt) | yjfK | hypothetical protein |
| * | NC_007779 | 1,301,049 | 0 | C→T | 100.0% | 0.7 | 1 | intergenic (+227/‑81) | ychE/insC | inner membrane protein/IS2 element protein |
| * | NC_007779 | 617,591 | 1 | .→C | 0.4% | 0.3 ‑0.7 ‑0.0 | 446 | coding (115/1134 nt) | fepE | regulator of length of O‑antigen component of lipopolysaccharide chains |
| * | NC_007779 | 1,050,643 | 0 | G→T | 100.0% | ‑0.1 | 1 | R65S (AGG→AGT) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 3,459,887 | 0 | C→G | 100.0% | ‑0.1 | 1 | R284P (CGT→CCT) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 1,050,361 | 1 | .→C | 100.0% | ‑0.2 | 1 | coding (107/276 nt) | insA | IS1 repressor protein InsA |
| * | NC_007779 | 3,459,876 | 0 | C→A | 100.0% | ‑0.2 | 1 | E288* (GAA→TAA) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 4,169,526 | 0 | T→G | 100.0% | ‑0.2 | 1 | L147R (CTG→CGG) | tufA | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 3,460,023 | 0 | C→A | 100.0% | ‑0.5 | 1 | V239F (GTT→TTT) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 3,460,024 | 0 | T→A | 100.0% | ‑0.5 | 1 | K238N (AAA→AAT) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 3,460,025 | 0 | T→A | 100.0% | ‑0.5 | 1 | K238I (AAA→ATA) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 3,460,026 | 0 | T→A | 100.0% | ‑0.5 | 1 | K238* (AAA→TAA) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 3,460,027 | 0 | G→A | 100.0% | ‑0.5 | 1 | I237I (ATC→ATT) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 3,460,029 | 0 | T→A | 100.0% | ‑0.5 | 1 | I237F (ATC→TTC) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 3,460,030 | 0 | G→A | 100.0% | ‑0.5 | 1 | I236I (ATC→ATT) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 3,460,032 | 0 | T→A | 100.0% | ‑0.5 | 1 | I236F (ATC→TTC) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 3,460,034 | 0 | C→A | 100.0% | ‑0.5 | 1 | G235V (GGT→GTT) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 3,460,035 | 0 | C→A | 100.0% | ‑0.5 | 1 | G235C (GGT→TGT) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 3,460,036 | 0 | G→A | 100.0% | ‑0.5 | 1 | R234R (CGC→CGT) | tufB | protein chain elongation factor EF‑Tu |
| * | NC_007779 | 3,460,037 | 0 | C→A | 100.0% | ‑0.5 | 1 | R234L (CGC→CTC) | tufB | protein chain elongation factor EF‑Tu |