mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 1,371,749 | 1 | .→T | 1.8% | 21.9 ‑1.5 ‑0.6 | 332 | intergenic (+32/‑181) | pspE/ycjM | thiosulfate:cyanide sulfurtransferase/glucosyltransferase |
| * | NC_007779 | 3,152,854 | 1 | .→A | 1.1% | 7.5 ‑0.5 ‑0.0 | 278 | coding (636/660 nt) | yghB | inner membrane protein |
| * | NC_007779 | 2,945,991 | 1 | .→A | 1.0% | 7.3 0.0 ‑1.3 | 300 | intergenic (‑157/‑52) | mltA/metZ | membrane‑bound lytic murein transglycosylase A/tRNA‑Met |
| * | NC_007779 | 3,059,420 | 1 | .→T | 1.0% | 6.4 ‑0.5 ‑0.0 | 307 | intergenic (+118/‑86) | argP/yliK | DNA‑binding transcriptional activator/methylmalonyl‑CoA mutase |
| * | NC_007779 | 697,558 | 1 | .→T | 0.7% | 2.9 ‑1.6 ‑0.1 | 279 | intergenic (‑3/+377) | metT/asnB | tRNA‑Met/asparagine synthetase B |
| * | NC_007779 | 3,231,439 | 1 | .→A | 0.7% | 2.9 0.0 ‑0.0 | 296 | coding (1119/2019 nt) | fadH | 2,4‑dienoyl‑CoA reductase |
| * | NC_007779 | 2,577,495 | 1 | .→A | 0.7% | 2.8 ‑1.6 ‑1.5 | 282 | coding (174/951 nt) | talA | transaldolase A |
| * | NC_007779 | 2,296,314 | 1 | .→T | 0.7% | 2.6 ‑0.7 ‑0.6 | 305 | coding (1925/1944 nt) | ccmF | heme lyase, CcmF subunit |
| * | NC_007779 | 2,306,988 | 1 | .→G | 0.7% | 2.6 ‑2.2 ‑0.0 | 286 | intergenic (‑157/‑251) | napF/eco | ferredoxin‑type protein/ecotin |
| * | NC_007779 | 3,338,299 | 1 | .→T | 0.7% | 2.6 ‑0.7 ‑0.2 | 296 | coding (18/552 nt) | yrbD | ABC‑type organic solvent transporter |
| * | NC_007779 | 2,618,856 | 1 | .→A | 0.7% | 2.5 ‑0.7 ‑0.2 | 289 | intergenic (‑40/+46) | uraA/upp | uracil transporter/uracil phosphoribosyltransferase |
| * | NC_007779 | 3,566,927 | 1 | .→A | 0.6% | 2.5 ‑1.5 ‑0.7 | 337 | coding (648/927 nt) | yihR | aldose‑1‑epimerase |
| * | NC_007779 | 839,315 | 1 | .→G | 0.7% | 2.4 ‑1.4 ‑0.0 | 290 | coding (315/678 nt) | ybiX | hypothetical protein |
| * | NC_007779 | 3,317,267 | 1 | .→T | 0.7% | 2.3 ‑0.7 ‑0.3 | 289 | coding (115/1488 nt) | nusA | transcription termination/antitermination L factor |
| * | NC_007779 | 2,099,403 | 1 | .→A | 0.6% | 2.1 ‑0.7 ‑0.1 | 308 | intergenic (+41/+55) | hisI/cld | fused phosphoribosyl‑AMP cyclohydrolase and phosphoribosyl‑ATP pyrophosphatase/regulator of length of O‑antigen component of lipopolysaccharide chains |
| * | NC_007779 | 2,614,764 | 1 | .→A | 0.7% | 2.0 0.0 ‑0.0 | 297 | coding (15/1464 nt) | yfgC | peptidase |
| * | NC_007779 | 3,293,230 | 1 | .→A | 0.6% | 1.9 0.0 ‑0.0 | 323 | intergenic (‑40/‑25) | yraL/yraM | methyltransferase/hypothetical protein |
| * | NC_007779 | 1,119,859 | 1 | .→T | 0.7% | 1.7 0.0 ‑0.2 | 303 | coding (195/576 nt) | yceI | hypothetical protein |
| * | NC_007779 | 1,097,403 | 0 | A→. | 0.7% | 1.2 0.0 ‑0.0 | 401 | intergenic (+152/+403) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 2,287,403 | 1 | .→A | 0.6% | 0.5 ‑0.7 0.0 | 354 | intergenic (‑122/‑60) | yejK/yejL | nucleotide associated protein/hypothetical protein |
| * | NC_007779 | 730,441 | 0 | T→A | 100.0% | ‑0.5 | 1 | V146E (GTG→GAG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,442 | 0 | G→A | 100.0% | ‑0.5 | 1 | V146V (GTG→GTA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,443 | 0 | G→A | 100.0% | ‑0.5 | 1 | A147T (GCG→ACG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,444 | 0 | C→A | 100.0% | ‑0.5 | 1 | A147E (GCG→GAG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,445 | 0 | G→A | 100.0% | ‑0.5 | 1 | A147A (GCG→GCA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,449 | 0 | C→A | 100.0% | ‑0.5 | 1 | L149M (CTG→ATG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,450 | 0 | T→A | 100.0% | ‑0.5 | 1 | L149Q (CTG→CAG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,451 | 0 | G→A | 100.0% | ‑0.5 | 1 | L149L (CTG→CTA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,452 | 0 | G→A | 100.0% | ‑0.5 | 1 | D150N (GAT→AAT) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,454 | 0 | T→A | 100.0% | ‑0.5 | 1 | D150E (GAT→GAA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,455 | 0 | G→A | 100.0% | ‑0.5 | 1 | E151K (GAA→AAA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,458 | 0 | G→A | 100.0% | ‑0.5 | 1 | G152S (GGT→AGT) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,459 | 0 | G→A | 100.0% | ‑0.5 | 1 | G152D (GGT→GAT) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,460 | 0 | T→A | 100.0% | ‑0.5 | 1 | G152G (GGT→GGA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,461 | 0 | C→A | 100.0% | ‑0.5 | 1 | H153N (CAC→AAC) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,463 | 0 | C→A | 100.0% | ‑0.5 | 1 | H153Q (CAC→CAA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,464 | 0 | C→A | 100.0% | ‑0.5 | 1 | R154R (CGG→AGG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,465 | 0 | G→A | 100.0% | ‑0.5 | 1 | R154Q (CGG→CAG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,466 | 0 | G→A | 100.0% | ‑0.5 | 1 | R154R (CGG→CGA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 1,050,652 | 0 | G→A | 100.0% | ‑0.5 | 1 | K68K (AAG→AAA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,654 | 0 | C→A | 100.0% | ‑0.5 | 1 | T69K (ACG→AAG) | insB | IS1 transposase InsAB' |