| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | 674958 = | 811 (3.200) | 69 (0.280) | 56/178 | NT | 7.9% | coding (248/2583 nt) | leuS | leucyl‑tRNA synthetase |
| ? | NC_007779 | = 689466 | NA (NA) | intergenic (‑31/+299) | insH/lnt | IS5 transposase and trans‑activator/apolipoprotein N‑acyltransferase | |||||
ATGGGCCACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_007779/675058‑674958‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACC < NC_007779/689466‑689382 ATGGGCCACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGTAGCCGATCGGCTGGGACGCGTTTGG < 1:9228971/101‑1ATGGGCCACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGG > 1:9928103/1‑101ATGGGCCACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGG < 1:1446071/101‑1ATGGGCCACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGG > 1:1330963/1‑101ATGGGCCACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGG > 1:3996640/1‑101ATGGGCCACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGG > 1:11681445/1‑101ATGGGCCACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGG < 1:11095948/101‑1 TGGGCCACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGG < 1:1519540/101‑1 TGGGCCACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGG < 1:8064385/101‑1 TGGGCCACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGG < 1:9506808/101‑1 CCACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGG > 1:3738080/1‑101 ACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTG < 1:9235322/101‑1 ACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGAGCGCGTTTGGGAAGGgg > 1:9035118/1‑99 CGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGC < 1:7903833/101‑1 CGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGC < 1:8924291/101‑1 GTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCG > 1:10601451/1‑101 TACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGA > 1:4281339/1‑101 TACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGA > 1:1444601/1‑101 ACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAA > 1:1758568/1‑101 ACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAA < 1:6992602/101‑1 ACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCACCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAA < 1:11061414/101‑1 CGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAAC < 1:1571642/101‑1 CTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTC > 1:11718816/1‑101 TACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCC > 1:12587924/1‑101 CACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCT < 1:3163511/101‑1 CACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCT < 1:82384/101‑1 CCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGA > 1:1762561/1‑101 ATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATA < 1:5704535/101‑1 TCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATAT < 1:725526/101‑1 CGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATG < 1:9237587/101‑1 CGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATG > 1:9051669/1‑101 CGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATG < 1:2836980/101‑1 GGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGA > 1:10917687/1‑101 GTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAG < 1:11429553/101‑1 TGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGA > 1:453763/1‑101 TGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGA < 1:12289028/101‑1 gCGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATC < 1:2321694/100‑1 ACGTGATCGCCCGCTACCAGCGTATGCTGGGTAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATC > 1:5490732/1‑101 ACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATC > 1:4617170/1‑101 CGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCA > 1:521198/1‑101 GTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCAT > 1:4508544/1‑101 TGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGTGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATG > 1:8002164/1‑101 ATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTT > 1:9343285/1‑101 TCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTT < 1:41673/101‑1 CGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTG < 1:9804899/101‑1 CGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTG < 1:580124/101‑1 CCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTC > 1:3395651/1‑101 CCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA < 1:12136688/101‑1 CCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA > 1:2854930/1‑101 AGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGC < 1:12828914/101‑1 CGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCA > 1:8247744/1‑101 ATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGGGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAG > 1:714623/1‑101 TGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGA > 1:4986418/1‑101 CTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAC > 1:10437066/1‑101 TGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA < 1:10536607/101‑1 TGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA < 1:8521046/101‑1 TGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA > 1:3385634/1‑101 GGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG < 1:10608212/101‑1 GCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGG < 1:12373548/101‑1 AAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTT < 1:293280/101‑1 AAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTT > 1:5694198/1‑101 AAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTC > 1:1056046/1‑101 GTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATTTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT < 1:8355174/101‑1 GTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT < 1:3309774/101‑1 GTCCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT < 1:4194528/101‑1 CCTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGA < 1:3942785/101‑1 CTGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAG < 1:12680229/101‑1 TGCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGT < 1:8031898/101‑1 GCAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTC > 1:4780688/1‑101 CAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCA < 1:4931522/101‑1 CAGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCA < 1:8931050/101‑1 AGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCAT > 1:12814416/1‑101 AGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCAT > 1:6252406/1‑101 AGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCAT < 1:3202322/101‑1 AGCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGCTTCATCATGAGTCAT > 1:10923195/1‑101 GCCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATC < 1:7793405/101‑1 CCGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCA > 1:4566449/1‑101 CGATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAA > 1:1086924/1‑101 GATCGGCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAAC > 1:9130844/1‑101 ATCGGCTGGGACGCGTTTGGGAAGGGGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACT > 1:2753836/1‑101 GCTGGGACGCGTTTGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACC < 1:4101910/101‑1 ATGGGCCACGTACGTAACTACACCATCGGTGACGTGATCGCCCGCTACCAGCGTATGCTGGGCAAAAACGTCCTGCAGCCGATCGGCTGGGACGCGTTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_007779/675058‑674958‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACC < NC_007779/689466‑689382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |