BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	1980091 =	0 (0.000)	186 (0.740)	93/180	NT	100%	intergenic (‑171/+264)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein
*	?	NC_007779	1980209 =	NA (NA)	186 (0.740)	93/180	NT	100%	intergenic (‑289/+146)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein

Only 100 of 210 total aligned reads displayed.

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAA  >  NC_007779/1980109‑1980304

cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaag                                                                                                  >  1:10053403/1‑101 (MQ=255)

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagg                                                                                                 >  1:4906170/1‑101 (MQ=255)

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagg                                                                                                 <  1:2521877/101‑1 (MQ=255)

   cGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaa                                                                                               >  1:745733/1‑101 (MQ=255)

   cGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaa                                                                                               >  1:12406243/1‑101 (MQ=255)

   cGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaa                                                                                               <  1:11366008/101‑1 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaa‑g                                                                                             >  1:9596180/1‑101 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaa‑g                                                                                             >  1:216135/1‑101 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaa‑g                                                                                             >  1:10970083/1‑101 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaa‑g                                                                                             >  1:9200711/1‑101 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagaaa‑g                                                                                             >  1:8034118/1‑101 (MQ=255)

     cAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaa‑gg                                                                                            <  1:4495811/101‑1 (MQ=255)

      aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGt                                                                                           >  1:2090904/1‑101 (MQ=255)

       aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTg                                                                                          <  1:7757529/101‑1 (MQ=255)

       aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTg                                                                                          <  1:11760655/101‑1 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCg                                                                                        <  1:10184751/101‑1 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCg                                                                                        <  1:3514891/101‑1 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGa                                                                                       <  1:7495747/101‑1 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGa                                                                                       >  1:8140429/1‑101 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGa                                                                                       <  1:5242934/101‑1 (MQ=255)

           tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGaa                                                                                      >  1:6552545/1‑101 (MQ=255)

            aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAAt                                                                                     <  1:7899410/101‑1 (MQ=255)

             cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATa                                                                                    >  1:3413189/1‑101 (MQ=255)

              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATaa                                                                                   <  1:2331414/101‑1 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAg                                                                                  <  1:10709635/101‑1 (MQ=255)

                gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGc                                                                                 >  1:889993/1‑101 (MQ=255)

                gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGc                                                                                 >  1:1267512/1‑101 (MQ=255)

                  cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCgg                                                                               >  1:5322071/1‑101 (MQ=255)

                    cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCgggg                                                                             <  1:6012586/101‑1 (MQ=255)

                        acccacaAACAAGGGAGGGGTGCTGCGATTTTCAATAATGCGTGATCCAGTTCACAAAAAACCCTCAATTGCGAAAGGAG‑GGTGCAAATAAGCGGGGAAAt                                                                         <  1:12070980/98‑1 (MQ=255)

                        acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAAt                                                                         >  1:11018239/1‑101 (MQ=255)

                        acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAAt                                                                         >  1:8161816/1‑101 (MQ=255)

                         cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAAtt                                                                        <  1:1842621/101‑1 (MQ=255)

                         cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAAtt                                                                        <  1:8058644/101‑1 (MQ=255)

                         cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAAtt                                                                        <  1:10494574/101‑1 (MQ=255)

                          gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAAttc                                                                       >  1:5989630/1‑101 (MQ=255)

                           cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAAttct                                                                      >  1:3124315/1‑101 (MQ=255)

                           cacaTAAAACGGAGGGGGGCTGCGATTTTAAATAAGGCGTGATGCAGATCACACAAAACACTAAATTACTAAAGGAA‑GGTGCGAATAAGCGGGGAAAttct                                                                      <  1:11625483/101‑1 (MQ=38)

                            acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAAttctt                                                                     <  1:7123162/101‑1 (MQ=255)

                            acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAAttctt                                                                     >  1:10851687/1‑101 (MQ=255)

                             caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAAttcttc                                                                    >  1:3611724/1‑101 (MQ=255)

                             caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAAttcttc                                                                    >  1:777800/1‑101 (MQ=255)

                             caTAAAACGGAGGGGGGCTGGGATTTTCAATAAGGCGTGATGCAGATCACAAAAAACACTCAATTACTTAGGGAA‑GGTGCGAAAAAGCGGGGAAAttcttc                                                                    <  1:12230433/101‑1 (MQ=37)

                                aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCg                                                                 <  1:1687151/101‑1 (MQ=255)

                                 cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                >  1:1194838/1‑101 (MQ=255)

                                 cAACGGAGGGGGGCTGCGATTTTAAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAGGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                <  1:9736084/101‑1 (MQ=255)

                                  aaCGGAGGGGGCCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTCCTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGc                                                               <  1:5500301/101‑1 (MQ=255)

                                   aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                              >  1:5687886/1‑101 (MQ=255)

                                    cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                             >  1:12536220/1‑101 (MQ=255)

                                    cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                             >  1:12018454/1‑101 (MQ=255)

                                     ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGa                                                            >  1:10029243/1‑101 (MQ=255)

                                      gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                                                           >  1:12732351/1‑101 (MQ=255)

                                      gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                                                           >  1:1397077/1‑101 (MQ=255)

                                       aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACt                                                          >  1:2602880/1‑101 (MQ=255)

                                          ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg                                                       >  1:8999666/1‑101 (MQ=255)

                                          ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg                                                       >  1:1115271/1‑101 (MQ=255)

                                           gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                      >  1:10523761/1‑101 (MQ=255)

                                            ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc                                                     >  1:6798136/1‑101 (MQ=255)

                                            ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc                                                     >  1:546020/1‑101 (MQ=255)

                                            ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc                                                     >  1:4318608/1‑101 (MQ=255)

                                              cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcat                                                   >  1:8270730/1‑101 (MQ=255)

                                              cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGATGACTCAGtcat                                                   >  1:12353451/1‑101 (MQ=255)

                                               tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt                                                  >  1:9631467/1‑101 (MQ=255)

                                                gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                 >  1:11205231/1‑101 (MQ=255)

                                                 cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc                                                >  1:156198/1‑101 (MQ=255)

                                                  gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                               >  1:9381865/1‑101 (MQ=255)

                                                   aTTTTCAATAATGCGTGATGCAGATCACCCAAACCACCCAATTCCTAAAGGAA‑GCTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                              <  1:1585192/101‑1 (MQ=21)

                                                   aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                              >  1:3802028/1‑101 (MQ=255)

                                                    ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt                                             >  1:7193253/1‑101 (MQ=255)

                                                      ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc                                           >  1:6235502/1‑101 (MQ=255)

                                                        cAATAATGAGTAATGCAGATCACAAAAAACCCTAAATAACTTAAGGAA‑GGTGCAAATACGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                         <  1:9308100/101‑1 (MQ=17)

                                                         aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc                                        >  1:4673145/1‑101 (MQ=255)

                                                          ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                       >  1:6879627/1‑101 (MQ=255)

                                                          ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                       <  1:3040540/101‑1 (MQ=255)

                                                          ataagGCGTAATGCAAACCACAAAAAACACTAAATTA‑TTAAGGAAGGGGGCAAAAAGGGGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                       <  1:507767/101‑1 (MQ=9)

                                                           taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt                                      >  1:2407525/1‑101 (MQ=255)

                                                            aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg                                     >  1:9095869/1‑101 (MQ=255)

                                                              tGCGTGATGCAGACCACACAAAACACTCAATTACTTAAGGAG‑GGGGCAAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt                                   <  1:11256025/101‑1 (MQ=21)

                                                                cGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                 >  1:8344734/1‑101 (MQ=255)

                                                                cGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                 >  1:12182977/1‑101 (MQ=255)

                                                                cGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                 >  1:4343006/1‑101 (MQ=255)

                                                                 gTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                <  1:4291065/101‑1 (MQ=255)

                                                                         gATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                        >  1:2905410/1‑101 (MQ=255)

                                                                          aTCACACAAAACACTCAATTACTTAGGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttt                       >  1:10254139/1‑101 (MQ=255)

                                                                            cacacaAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt                     >  1:6672759/1‑101 (MQ=255)

                                                                              cacaAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                   <  1:1435962/101‑1 (MQ=255)

                                                                              cacaAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                   >  1:2687860/1‑101 (MQ=255)

                                                                                caAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTcc                 >  1:1045768/1‑101 (MQ=255)

                                                                                  aaaCACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCg               >  1:9426370/1‑101 (MQ=255)

                                                                                    acacTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTa             >  1:4114816/1‑101 (MQ=255)

                                                                                    acacTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTa             >  1:3155225/1‑101 (MQ=255)

                                                                                    acacTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTa             >  1:328120/1‑101 (MQ=255)

                                                                                       cTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAt          >  1:4712007/1‑101 (MQ=39)

                                                                                        tCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg         >  1:3707190/1‑101 (MQ=38)

                                                                                         cAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc        >  1:7574249/1‑101 (MQ=37)

                                                                                         cAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc        >  1:6900866/1‑101 (MQ=37)

                                                                                          aaTTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc       >  1:9884286/1‑101 (MQ=35)

                                                                                           aTTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt      >  1:1861702/1‑101 (MQ=34)

                                                                                            ttccTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt     <  1:8458617/98‑1 (MQ=11)

                                                                                             tACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg    >  1:11712497/1‑101 (MQ=32)

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAA‑GGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAA  >  NC_007779/1980109‑1980304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.