BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	2411458 =	NA (NA)	238 (0.840)	127/180	NT	97.1%	intergenic (‑147/+15)	lrhA/insB	DNA‑binding transcriptional repressor/IS1 element protein
*	?	NC_007779	= 2985055	7 (0.020)	238 (0.840)	127/180	NT	97.1%	coding (553/1230 nt)	yqeG	transporter

Only 100 of 282 total aligned reads displayed.

CACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG  >  NC_007779/2411358‑2411556

cacacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCg                                                                                                    <  1:4883691/101‑1 (MQ=255)

 acacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCgg                                                                                                   >  1:842349/1‑101 (MQ=255)

  cacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGt                                                                                                  <  1:11417568/101‑1 (MQ=255)

  cacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGt                                                                                                  >  1:14322164/1‑101 (MQ=255)

   acacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTa                                                                                                 <  1:1175797/101‑1 (MQ=255)

    cacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGATaa                                                                                                >  1:8788873/1‑101 (MQ=255)

      caaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATg                                                                                              <  1:7312703/101‑1 (MQ=255)

      caaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATg                                                                                              <  1:6886231/101‑1 (MQ=255)

      caaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATg                                                                                              <  1:535712/101‑1 (MQ=255)

      caaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATg                                                                                              <  1:12733306/101‑1 (MQ=255)

        aacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGAc                                                                                            <  1:5806591/101‑1 (MQ=255)

        aacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACAAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGAc                                                                                            >  1:9127340/1‑101 (MQ=255)

            aGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCa                                                                                        >  1:9748356/1‑101 (MQ=255)

             gCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCaa                                                                                       <  1:2975243/101‑1 (MQ=255)

              cAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAAc                                                                                      <  1:10029528/101‑1 (MQ=255)

              cAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAAc                                                                                      >  1:10311971/1‑101 (MQ=255)

              cAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAAc                                                                                      >  1:11125692/1‑101 (MQ=255)

               aaTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACt                                                                                     <  1:1015884/101‑1 (MQ=255)

                 ttCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTa                                                                                   >  1:6735824/1‑101 (MQ=255)

                     aTTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGa                                                                               <  1:11844889/101‑1 (MQ=255)

                      tttGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGAt                                                                              <  1:6369395/101‑1 (MQ=255)

                        tGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAg                                                                            >  1:2554325/1‑101 (MQ=255)

                         gTAATGTGCCTCCCTGGCAGGTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAgt                                                                           >  1:14540892/1‑101 (MQ=255)

                          tAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAgtg                                                                          >  1:2794768/1‑101 (MQ=255)

                          tAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAgtg                                                                          <  1:607423/101‑1 (MQ=255)

                           aaTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAgtgt                                                                         >  1:8640147/1‑101 (MQ=255)

                           aaTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAgtgt                                                                         >  1:8053111/1‑101 (MQ=255)

                            aTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGtt                                                                        <  1:5301235/101‑1 (MQ=255)

                            aTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGtt                                                                        <  1:13252413/101‑1 (MQ=255)

                             tgtgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGttt                                                                       <  1:2336288/101‑1 (MQ=255)

                                gCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                                                    <  1:9097415/101‑1 (MQ=255)

                                 ccTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATg                                                                   <  1:7785263/101‑1 (MQ=255)

                                 ccTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATg                                                                   >  1:2605245/1‑101 (MQ=255)

                                 ccTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATg                                                                   >  1:9481850/1‑101 (MQ=255)

                                  cTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt                                                                  >  1:4644967/1‑101 (MQ=255)

                                   tCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                                 >  1:9031157/1‑101 (MQ=255)

                                     ccTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                                                               >  1:14371583/1‑101 (MQ=255)

                                      cTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAg                                                              <  1:4974299/101‑1 (MQ=255)

                                      cTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAg                                                              >  1:3369804/1‑101 (MQ=255)

                                      cTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAg                                                              <  1:1939057/101‑1 (MQ=255)

                                      cTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAg                                                              >  1:12576088/1‑101 (MQ=255)

                                      cTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAg                                                              <  1:1343662/101‑1 (MQ=255)

                                       tGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa                                                             >  1:2713375/1‑101 (MQ=255)

                                          cAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                                                          >  1:7070613/1‑101 (MQ=255)

                                           aGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt                                                         >  1:12066008/1‑101 (MQ=255)

                                           aGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt                                                         <  1:13301947/101‑1 (MQ=255)

                                           aGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt                                                         >  1:396293/1‑101 (MQ=255)

                                                  tCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                                  >  1:8373231/1‑101 (MQ=255)

                                                   ccGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATg                                                 <  1:6121703/101‑1 (MQ=255)

                                                   ccGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATg                                                 <  1:658164/101‑1 (MQ=255)

                                                   ccGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATg                                                 >  1:5097196/1‑101 (MQ=255)

                                                     ggAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc                                               >  1:383012/1‑101 (MQ=255)

                                                       aaCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACtt                                             <  1:10490871/101‑1 (MQ=255)

                                                          ccGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACtttat                                          >  1:5905303/1‑99 (MQ=255)

                                                          ccGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt                                          <  1:1351583/101‑1 (MQ=255)

                                                            ggACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa                                        <  1:13846362/101‑1 (MQ=255)

                                                             gACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                                       >  1:14239244/1‑101 (MQ=255)

                                                             gACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                                       >  1:11896133/1‑101 (MQ=255)

                                                              aCGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg                                      <  1:1847080/101‑1 (MQ=255)

                                                               cGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                                     <  1:7026511/101‑1 (MQ=255)

                                                               cGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                                     <  1:1626664/101‑1 (MQ=255)

                                                               cGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                                     <  1:12839430/101‑1 (MQ=255)

                                                               cGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                                     >  1:392392/1‑101 (MQ=255)

                                                                 aaaGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                                   >  1:600721/1‑101 (MQ=255)

                                                                 aaaGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                                   >  1:7360065/1‑101 (MQ=255)

                                                                 aaaGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                                   >  1:1466578/1‑101 (MQ=255)

                                                                  aaGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGc                                  >  1:13636595/1‑101 (MQ=255)

                                                                  aaGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGc                                  >  1:3761505/1‑101 (MQ=255)

                                                                  aaGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGc                                  >  1:9323244/1‑101 (MQ=255)

                                                                   aGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTTTTGATAGGGTTTTATGTTCAGATAATGCCCGATGATTTGGTCTTGCAGcc                                 >  1:3883692/1‑100 (MQ=21)

                                                                     tAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTcc                               <  1:9685796/101‑1 (MQ=255)

                                                                      aaaaaTGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCa                              >  1:171172/1‑101 (MQ=255)

                                                                      aaaaaTGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCa                              >  1:4201169/1‑101 (MQ=255)

                                                                      aaaaaTGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCa                              >  1:3476146/1‑101 (MQ=255)

                                                                       aaaaTGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAc                             <  1:5545649/101‑1 (MQ=255)

                                                                        aaaTGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAcc                            >  1:3231928/1‑101 (MQ=255)

                                                                          aTGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGa                          >  1:1861776/1‑101 (MQ=255)

                                                                           tGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAt                         >  1:11593710/1‑101 (MQ=255)

                                                                           tGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAt                         >  1:13084407/1‑101 (MQ=255)

                                                                           tGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCACCTCCACCGAt                         <  1:12366771/101‑1 (MQ=255)

                                                                            gCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAtt                        >  1:5592869/1‑101 (MQ=255)

                                                                            gCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAtt                        <  1:3086557/101‑1 (MQ=255)

                                                                             cATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAttt                       >  1:919347/1‑101 (MQ=255)

                                                                              atatGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAtttt                      >  1:2456573/1‑101 (MQ=255)

                                                                               tatGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTg                     <  1:153234/101‑1 (MQ=255)

                                                                               tatGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTg                     >  1:11563137/1‑101 (MQ=255)

                                                                                atGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGCTGACTTTGTCATGCAGCTCCACCGATTTTga                    >  1:5167508/1‑101 (MQ=255)

                                                                                   aGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGaa                 <  1:10258605/101‑1 (MQ=255)

                                                                                     ttGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg               >  1:11010448/1‑101 (MQ=255)

                                                                                     ttGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg               >  1:5436086/1‑101 (MQ=255)

                                                                                     ttGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg               >  1:11363902/1‑101 (MQ=255)

                                                                                      tGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGa              >  1:5683425/1‑101 (MQ=255)

                                                                                         aCTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAg           <  1:12133824/101‑1 (MQ=40)

                                                                                          cTAAAAAAGCGGTAATGACTCCAGCTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGc          <  1:7483974/101‑1 (MQ=255)

                                                                                          cTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGc          <  1:10707789/101‑1 (MQ=39)

                                                                                               aaaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACtt     <  1:10834330/101‑1 (MQ=33)

                                                                                                aaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTc    >  1:2021942/1‑101 (MQ=32)

                                                                                                aaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGACAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTc    <  1:4266718/101‑1 (MQ=17)

                                                                                                 aGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTcc   >  1:6216447/1‑101 (MQ=31)

                                                                                                  gCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCg  >  1:13705829/1‑101 (MQ=11)

CACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG  >  NC_007779/2411358‑2411556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.