New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 3748105	NA (NA)	297 (1.050)	137/180	NT	99.3%	intergenic (+146/+966)	insH/tnaA	IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
	?	NC_007779	3748643 =	2 (0.010)					intergenic (+684/+428)	insH/tnaA	IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent

CGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAGAACACCAGCAGG  >  NC_007779/3748023‑3748123                                                                                   |                   cGGGAGAAAAAGTCGGCTCAAACATGAAGATATGAAATGACTGAGTCAGCCGATAAGAATTTCCCCGCTTATTCCCACCTTCCCTAGAGGacaacgtgcag  <  1:4767864/101‑9 (MQ=11)                                                                                   |                   CGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAGAACACCAGCAGG  >  NC_007779/3748023‑3748123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.