New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	4310363 =	NA (NA)	239 (0.810)	117/180	NT	99.6%	intergenic (‑287/‑68)	yjcS/insH	alkyl sulfatase/IS5 element protein
	?	NC_007779	4353540 =	1 (0.000)					intergenic (‑118/+453)	dcuB/dcuR	C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS

CATGGGGCTTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTT  >  NC_007779/4310350‑4310450              |                                                                                        ccaactattttAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATATGGCGCCATAGGACAGGGTTCATCATGAGTCATCAACTTAACtc  >  1:6246120/9‑100 (MQ=11)              |                                                                                        CATGGGGCTTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTT  >  NC_007779/4310350‑4310450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.