BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	1909276 =	220 (0.750)	56 (0.190)	48/178	NT	20.5%	coding (30/144 nt)	yobF	hypothetical protein
*	?	NC_007779	2411459 =	NA (NA)	56 (0.190)	48/178	NT	20.5%	intergenic (‑148/+14)	lrhA/insB	DNA‑binding transcriptional repressor/IS1 element protein

Only 100 of 322 total aligned reads displayed.

ACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG  >  NC_007779/2411359‑2411556

   cacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTaa                                                                                                >  1:8170858/1‑101 (MQ=255)

   cacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTaa                                                                                                >  1:198005/1‑101 (MQ=255)

       aacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGAc                                                                                            >  1:509242/1‑101 (MQ=255)

       aacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGAc                                                                                            <  1:1743509/101‑1 (MQ=255)

        acaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACt                                                                                           <  1:10555822/101‑1 (MQ=255)

         caaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTc                                                                                          <  1:5509283/101‑1 (MQ=255)

          aaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTcc                                                                                         <  1:9492902/101‑1 (MQ=255)

            gCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCaa                                                                                       <  1:1295719/101‑1 (MQ=255)

            gCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCaa                                                                                       <  1:10662792/101‑1 (MQ=255)

            gCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCaa                                                                                       >  1:12778375/1‑101 (MQ=255)

               aTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACtt                                                                                    <  1:1808687/101‑1 (MQ=255)

               aTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACtt                                                                                    <  1:11454438/101‑1 (MQ=255)

                ttCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTa                                                                                   >  1:10969069/1‑101 (MQ=255)

                ttCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTa                                                                                   <  1:9666852/101‑1 (MQ=255)

                 tCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTAt                                                                                  >  1:9778050/1‑101 (MQ=255)

                   cATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTg                                                                                <  1:3936586/101‑1 (MQ=255)

                     tttGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGAt                                                                              <  1:6754730/101‑1 (MQ=255)

                      ttGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATa                                                                             >  1:11880376/1‑101 (MQ=255)

                        gTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAgt                                                                           >  1:5964231/1‑101 (MQ=255)

                         tAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCGAACTTATTGATAgtg                                                                          >  1:8593704/1‑101 (MQ=255)

                         tAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAgtg                                                                          <  1:4081133/101‑1 (MQ=255)

                           aTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGtt                                                                        <  1:3373135/101‑1 (MQ=255)

                              tgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                                     <  1:13772229/101‑1 (MQ=255)

                               gCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                                                    <  1:6377277/101‑1 (MQ=255)

                                ccTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATg                                                                   >  1:6208896/1‑101 (MQ=255)

                                ccTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATg                                                                   <  1:10028658/101‑1 (MQ=255)

                                 cTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt                                                                  >  1:13380817/1‑101 (MQ=255)

                                 cTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt                                                                  <  1:11734614/101‑1 (MQ=255)

                                  tCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                                 <  1:3901003/101‑1 (MQ=255)

                                  tCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                                 >  1:344176/1‑101 (MQ=255)

                                   cccTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                                <  1:2943985/101‑1 (MQ=255)

                                   cccTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAACGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                                <  1:7273050/101‑1 (MQ=255)

                                    ccTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                                                               <  1:9144277/101‑1 (MQ=255)

                                      tGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa                                                             >  1:14393462/1‑101 (MQ=255)

                                       ggCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                                                            >  1:802917/1‑101 (MQ=255)

                                       ggCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                                                            <  1:7617904/101‑1 (MQ=255)

                                       ggCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                                                            >  1:1852269/1‑101 (MQ=255)

                                        gCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa                                                           >  1:12673148/1‑101 (MQ=255)

                                         cAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                                                          <  1:12230969/101‑1 (MQ=255)

                                         cAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                                                          <  1:12050954/101‑1 (MQ=255)

                                          aGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt                                                         <  1:5305780/101‑1 (MQ=255)

                                          aGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt                                                         <  1:11152083/101‑1 (MQ=255)

                                          aGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt                                                         >  1:8332474/1‑101 (MQ=255)

                                          aGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt                                                         <  1:6575206/101‑1 (MQ=255)

                                             ttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc                                                      >  1:59201/1‑101 (MQ=255)

                                              tCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGccc                                                     <  1:3069237/101‑1 (MQ=255)

                                              tCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGccc                                                     <  1:4598459/101‑1 (MQ=255)

                                              tCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGATAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGccc                                                     >  1:12724074/1‑101 (MQ=255)

                                               cATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCg                                                    <  1:10748452/101‑1 (MQ=255)

                                               cATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCg                                                    <  1:3690729/101‑1 (MQ=255)

                                                aTCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCgc                                                   <  1:14529437/101‑2 (MQ=255)

                                                aTCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGa                                                   >  1:10348015/1‑101 (MQ=255)

                                                 tCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                                  <  1:4166372/101‑1 (MQ=255)

                                                  ccGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATg                                                 >  1:3178791/1‑101 (MQ=255)

                                                  ccGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATg                                                 <  1:14851101/101‑1 (MQ=255)

                                                    ggAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc                                               >  1:9921274/1‑101 (MQ=255)

                                                    ggAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc                                               >  1:2541939/1‑101 (MQ=255)

                                                     gAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt                                              >  1:8470309/1‑101 (MQ=255)

                                                     gAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt                                              >  1:2623414/1‑101 (MQ=255)

                                                      aaCCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTGTGTTCAGATAATGCCCGATGACtt                                             <  1:14769016/101‑1 (MQ=255)

                                                       aCCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt                                            <  1:1020509/101‑1 (MQ=255)

                                                       aCCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt                                            <  1:1882848/101‑1 (MQ=255)

                                                       aCCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt                                            <  1:5436943/101‑1 (MQ=255)

                                                        cccGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTg                                           <  1:6144396/101‑1 (MQ=255)

                                                         ccGGACGAAAGTAAAAATGCGTATGAGTTGCACTAAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTg                                           >  1:9274459/1‑101 (MQ=255)

                                                         ccGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt                                          >  1:7860705/1‑101 (MQ=255)

                                                            gACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                                       >  1:3791501/1‑101 (MQ=255)

                                                            gACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                                       <  1:7112518/101‑1 (MQ=255)

                                                            gACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                                       >  1:6891444/1‑101 (MQ=255)

                                                               gAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa                                    >  1:89559/1‑101 (MQ=255)

                                                               gAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa                                    >  1:3732188/1‑101 (MQ=255)

                                                               gAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa                                    <  1:3999378/101‑1 (MQ=255)

                                                                aaaGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTCTGTTCAGATAATGCCCGATGACTTTGGCATGCAg                                   >  1:4444224/1‑101 (MQ=255)

                                                                aaaGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATCGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                                   >  1:10089296/1‑101 (MQ=255)

                                                                 aaGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGc                                  <  1:5171943/101‑1 (MQ=255)

                                                                  aGTAAAAATGCATATGAGTTGCACT‑AAAAATGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCt                                 <  1:2149950/101‑1 (MQ=255)

                                                                  aGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCt                                 >  1:2226924/1‑101 (MQ=255)

                                                                    tAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTcc                               >  1:12610342/1‑101 (MQ=255)

                                                                      aaaaTGCATATGAGTTGCACT‑‑AAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAcc                            <  1:6696027/101‑1 (MQ=255)

                                                                       aaaTGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAcc                            >  1:1660464/1‑101 (MQ=255)

                                                                        aaTGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCg                           <  1:8916149/101‑1 (MQ=255)

                                                                           gCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAtt                        >  1:4951973/1‑101 (MQ=255)

                                                                            cATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAttt                       >  1:11310587/1‑101 (MQ=255)

                                                                              tatGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTg                     >  1:13464440/1‑101 (MQ=255)

                                                                               atGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgn                    <  1:10865805/101‑2 (MQ=255)

                                                                                  aGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGaa                 <  1:3533724/101‑1 (MQ=255)

                                                                                   gTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAc                >  1:3661340/1‑101 (MQ=255)

                                                                                   gTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAc                >  1:2966575/1‑101 (MQ=255)

                                                                                    ttGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCGCCGATTTTGAGAACg               >  1:11244457/1‑101 (MQ=255)

                                                                                    ttGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg               <  1:4765210/101‑1 (MQ=255)

                                                                                    ttGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg               >  1:9046566/1‑101 (MQ=255)

                                                                                      gCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAc             <  1:13591645/101‑1 (MQ=255)

                                                                                        aCT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAg           <  1:12439383/101‑1 (MQ=40)

                                                                                          t‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCg         >  1:7810327/1‑101 (MQ=38)

                                                                                          t‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCg         <  1:1410529/101‑1 (MQ=38)

                                                                                            aaaaaaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGa        >  1:10475586/1‑101 (MQ=37)

                                                                                             aaaaaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGAc       <  1:4248369/101‑1 (MQ=35)

                                                                                             aaaaaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGAc       <  1:5732039/101‑1 (MQ=35)

                                                                                                aaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTc    >  1:7012156/1‑101 (MQ=32)

                                                                                                 aGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTcc   <  1:7897265/101‑1 (MQ=31)

ACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACT‑AAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG  >  NC_007779/2411359‑2411556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.