New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 4311557	NA (NA)	9 (0.030)	9/180	NT	3.1%	coding (921/1029 nt)	alsK	D‑allose kinase
	?	NC_007779	= 4315759	283 (0.980)					intergenic (‑101/+26)	alsA/alsB	fused D‑allose transporter subunits and ATP‑binding components of ABC superfamily/D‑allose transporter subunit

AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/4311484‑4311557 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAAGTGTCTTATCCGGCCAACAAAATAACCTGAACGTAGACCTGATAAATGTAGCCATCAGGCAATAATACGATATTTCGTGCAGAGAGGTTATT  <  NC_007779/4315759‑4315660                                                                                                                                                                                AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGTCTTATCCGGCCAACA                                                                           <  1:7207424/101‑1         TCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGTCTTATCCGGCCAACAAAATAACC                                                                   >  1:10341367/1‑101                   AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGTCTTATCCGGCCAACAAAATAACCTGAACGTAGA                                                         <  1:7391414/101‑1                          AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGTCTTATCCGGCCAACAAAATAACCTGAACGTAGACCTGATA                                                  >  1:14220820/1‑101                          AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGTCTTATCCGGCCAACAAAATAACCTGAACGTAGACCTGATA                                                  <  1:8744450/101‑1                           AATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGTCTTATCCGGCCAACAAAATAACCTGAACGTAGACCTGATAA                                                 >  1:715451/1‑101                                            AGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGTCTTATCCGGCCAACAAAATAACCTGAACGTAGACCTGATAAATGTAGCCATCAGGCAA                                >  1:14939996/1‑101                                                  ATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGTCTTATCCGGCCAACAAAATAACCTGAACGTAGACCTGATAAATGTAGCCATCAGGCAATAATAC                          >  1:2485226/1‑101                                                        CCGCTTATTCGCACCTTCCCTAATGAAGTGTCTTATCCGGCCAACAAAATAACCTGAACGTAGACCTGATAAATGTAGCCATCAGGCAATAATACGATATT                    <  1:6177357/101‑1                                                                          CCTAATGAAGTGTCTTATCCGGCCAACAAAATAACCTGAACGTAGACCTGATAAATGTAGCCATCAGGCAATAATACGATATTTCGTGCAGAGAGGTTATT  <  1:9360208/101‑1                                                                                                                                                                                AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/4311484‑4311557 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAAGTGTCTTATCCGGCCAACAAAATAACCTGAACGTAGACCTGATAAATGTAGCCATCAGGCAATAATACGATATTTCGTGCAGAGAGGTTATT  <  NC_007779/4315759‑4315660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.