New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 = 13010401 (0.000)238 (0.900) 130/166 NT 99.8% intergenic (+218/‑90) ychE/insC inner membrane protein/IS2 element protein
?NC_007779 1302377 = 0 (0.000)intergenic (+19/‑519) insD/oppA IS2 element protein/oligopeptide transporter subunit

Only 100 of 280 total aligned reads displayed.

AGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATG  >  NC_007779/1300940‑1301139
                                                                                                    |                                                                                                   
agttagttATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA                                                                                                     >  1:8079431‑M1/1‑101 (MQ=255)
agttagttATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA                                                                                                     >  1:11609033‑M1/1‑101 (MQ=255)
 gttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAt                                                                                                    <  1:178096‑M1/101‑2 (MQ=255)
 gttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAt                                                                                                    <  1:10360351‑M1/101‑2 (MQ=255)
 gttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAt                                                                                                    <  1:4264544‑M1/101‑2 (MQ=255)
 gttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAt                                                                                                    <  1:7113597‑M1/101‑2 (MQ=255)
 gttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAt                                                                                                    <  1:2450878‑M1/101‑2 (MQ=255)
  ttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAtt                                                                                                   <  1:6700936‑M1/101‑3 (MQ=255)
  ttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAtt                                                                                                   >  1:8608411‑M1/1‑99 (MQ=255)
   tagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAtta                                                                                                  <  1:10533041‑M1/101‑4 (MQ=255)
     gttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaat                                                                                                <  1:563632‑M1/101‑6 (MQ=255)
      ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaatt                                                                                               <  1:8674080‑M1/101‑7 (MQ=255)
      ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaatt                                                                                               <  1:5582620‑M1/101‑7 (MQ=255)
      ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaatt                                                                                               >  1:6867667‑M1/1‑95 (MQ=255)
      ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaatt                                                                                               <  1:12351111‑M1/101‑7 (MQ=255)
      ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaatt                                                                                               <  1:10747895‑M1/101‑7 (MQ=255)
       tataAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAAAAATTGAAATGATATTAttaattc                                                                                              <  1:8310740‑M1/101‑8 (MQ=255)
          aatgattTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccac                                                                                           <  1:4851371‑M1/98‑11 (MQ=255)
          aaGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccac                                                                                           >  1:1014309‑M1/1‑91 (MQ=255)
          aaGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccac                                                                                           >  1:11968336‑M1/1‑91 (MQ=255)
           aGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccact                                                                                          <  1:14418794‑M1/101‑12 (MQ=255)
           aGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccact                                                                                          <  1:8405182‑M1/101‑12 (MQ=255)
            agaTTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactg                                                                                         >  1:2040198‑M1/2‑89 (MQ=255)
             gATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgc                                                                                        >  1:14203417‑M1/1‑88 (MQ=255)
              aTTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcc                                                                                       >  1:1582146‑M1/1‑87 (MQ=255)
                 tCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgccttt                                                                                    >  1:7646023‑M1/1‑84 (MQ=255)
                 tCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgccttt                                                                                    <  1:1156296‑M1/101‑18 (MQ=255)
                 tCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgccttt                                                                                    >  1:847685‑M1/1‑84 (MQ=255)
                  ccTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAtaaattccactgcctttg                                                                                   <  1:14700440‑M1/101‑19 (MQ=255)
                      aaCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtag                                                                               <  1:4110433‑M1/101‑23 (MQ=255)
                       aCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtaga                                                                              <  1:13808848‑M1/101‑24 (MQ=255)
                       aCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtaga                                                                              >  1:9666696‑M1/1‑78 (MQ=255)
                       aCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtaga                                                                              <  1:10687646‑M1/101‑24 (MQ=255)
                       aCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtaga                                                                              <  1:14957033‑M1/101‑24 (MQ=255)
                         tGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagagg                                                                            >  1:5326783‑M1/1‑76 (MQ=255)
                          gCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagagga                                                                           <  1:3275156‑M1/101‑27 (MQ=255)
                            ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaa                                                                         <  1:7345836‑M1/101‑29 (MQ=255)
                            ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaa                                                                         <  1:7853121‑M1/101‑29 (MQ=255)
                            ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaa                                                                         >  1:10910166‑M1/1‑73 (MQ=255)
                            ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaa                                                                         >  1:14529880‑M1/1‑73 (MQ=255)
                            ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaa                                                                         <  1:10672492‑M1/101‑29 (MQ=255)
                              ctcctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagt                                                                       <  1:5146097‑M1/101‑31 (MQ=255)
                              ctcctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagt                                                                       >  1:3479445‑M1/1‑71 (MQ=255)
                              ctcctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagt                                                                       >  1:9781675‑M1/1‑71 (MQ=255)
                               tcctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtg                                                                      <  1:6816270‑M1/101‑32 (MQ=255)
                                  tcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgcta                                                                   <  1:5508038‑M1/101‑35 (MQ=255)
                                  tcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgcta                                                                   >  1:13335962‑M1/1‑67 (MQ=255)
                                    aCCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaa                                                                 <  1:291244‑M1/101‑37 (MQ=255)
                                     ccATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaat                                                                >  1:6310477‑M1/1‑64 (MQ=255)
                                      catcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaata                                                               <  1:600417‑M1/101‑39 (MQ=255)
                                      catcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaata                                                               <  1:4401632‑M1/101‑39 (MQ=255)
                                      catcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaata                                                               >  1:8259680‑M1/1‑63 (MQ=255)
                                       atcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataa                                                              <  1:11262830‑M1/101‑40 (MQ=255)
                                        tcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataat                                                             <  1:9828474‑M1/101‑41 (MQ=255)
                                        tcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataat                                                             >  1:12211809‑M1/1‑61 (MQ=255)
                                          atGTTATTTTCGCCACATCATACTCCTGGGCTTGCTGAAGAATAATTGAAATGATCTTAttaattcctctgcctttggtagaggaaagtgctaaataataa                                                           <  1:4166105‑M1/101‑43 (MQ=255)
                                           tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataat                                                          <  1:9141514‑M1/101‑44 (MQ=255)
                                           tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataat                                                          >  1:14211755‑M1/1‑58 (MQ=255)
                                             ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatca                                                        >  1:948898‑M1/1‑56 (MQ=255)
                                             ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatca                                                        >  1:13180964‑M1/1‑56 (MQ=255)
                                               aTTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattcccctgcctttggtagaggaaagtgctaaataataatcaat                                                      <  1:12286323‑M1/101‑48 (MQ=255)
                                                 tttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattg                                                    <  1:12768160‑M1/101‑50 (MQ=255)
                                                  ttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgt                                                   >  1:10078008‑M1/1‑51 (MQ=255)
                                                   tCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgtt                                                  >  1:2331374‑M1/1‑50 (MQ=255)
                                                    cGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgtta                                                 >  1:7011904‑M1/1‑49 (MQ=255)
                                                     gCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaa                                                <  1:591669‑M1/101‑54 (MQ=255)
                                                       cacaTCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaat                                              <  1:10791251‑M1/101‑56 (MQ=255)
                                                          atcatAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattat                                           <  1:1190450‑M1/101‑59 (MQ=255)
                                                            catAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattg                                         <  1:8823694‑M1/101‑61 (MQ=255)
                                                              tAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtg                                       >  1:12081435‑M1/1‑39 (MQ=255)
                                                               aaTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgc                                      <  1:4975432‑M1/101‑64 (MQ=255)
                                                                 tCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcat                                    <  1:220280‑M1/101‑66 (MQ=255)
                                                                     gggCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttca                                <  1:1040872‑M1/101‑70 (MQ=255)
                                                                     gggCTTGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttca                                >  1:13614482‑M1/1‑32 (MQ=255)
                                                                          tGCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactact                           >  1:2138540‑M1/1‑27 (MQ=255)
                                                                           gCTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactg                          >  1:5612325‑M1/1‑26 (MQ=255)
                                                                            cTGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactgg                         <  1:12658305‑M1/101‑77 (MQ=255)
                                                                             tGAAGAATAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactgga                        >  1:11387656‑M1/1‑24 (MQ=255)
                                                                              gaagaaTAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaa                       >  1:7500355‑M1/1‑23 (MQ=255)
                                                                              gaagaaTAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaa                       <  1:2669435‑M1/101‑79 (MQ=255)
                                                                               aagaaTAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaac                      <  1:4806268‑M1/101‑80 (MQ=255)
                                                                               aagaaTAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaac                      >  1:12601554‑M1/1‑22 (MQ=255)
                                                                                agaaTAATTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaact                     >  1:13462949‑M1/1‑21 (MQ=255)
                                                                                  aataatTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgt                   <  1:1879375‑M1/101‑83 (MQ=255)
                                                                                  aataagTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgt                   <  1:9430160‑M1/101‑83 (MQ=255)
                                                                                     aatTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaat                >  1:14042875‑M1/1‑16 (MQ=255)
                                                                                     aatTGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaat                <  1:842999‑M1/101‑86 (MQ=255)
                                                                                        tGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcag             <  1:5564928‑M1/101‑89 (MQ=255)
                                                                                        tGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcag             >  1:11836664‑M1/1‑13 (MQ=255)
                                                                                        tGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcag             <  1:4625922‑M1/101‑89 (MQ=255)
                                                                                        tGAAATGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcag             >  1:9014224‑M1/1‑13 (MQ=255)
                                                                                          aaaTGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa           >  1:3664802‑M1/1‑11 (MQ=255)
                                                                                           aaTGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaa          >  1:7554941‑M1/1‑10 (MQ=255)
                                                                                           aaTGATATTAttaattccactgccttcggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaa          <  1:12956709‑M1/101‑92 (MQ=255)
                                                                                            aTGATATTAttaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaa         <  1:11014054‑M1/101‑93 (MQ=255)
                                                                                              aatatTTGACCGGCCCCCCGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatgat       <  1:12637422/100‑1 (MQ=2)
                                                                                                tattattaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata     >  1:7689760‑M1/1‑5 (MQ=255)
                                                                                                tattattaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata     >  1:3925763‑M1/1‑5 (MQ=255)
                                                                                                  ttattaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagataga   >  1:11691247‑M1/1‑3 (MQ=255)
                                                                                                   tattaattccactgcctttggtagaggaaagtgctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagac  >  1:11328941‑M1/1‑2 (MQ=255)
                                                                                                    |                                                                                                   
AGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATG  >  NC_007779/1300940‑1301139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.