New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 = 32611330 (0.000)287 (1.070) 142/168 NT 100% intergenic (‑59/‑69) tdcE/insH pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein
?NC_007779 = 3748109 NA (NA)intergenic (+150/+962) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent

CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGATTTCACCAGCGAATCAACGTTGCCGCCTGAGGAG  >  NC_007779/3748017‑3748198
                                                                                            |                                                                                         
cATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCACAGCTTATTCACACCTTACTTAAAGAacgtt                                                                                   >  1:6235547/1‑98 (MQ=11)
  tttACGGGAGAAAAACTCGGCACAAACATGAAGAAATGAAATCACTTAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCGTCCCTagacgcgctgcg                                                                                 <  1:8914727/101‑10 (MQ=1)
    tACGGGAGAAAAAATCCCCTCCAACATGAAGAAATGAAAAAACTCAGTCAGCCGAGAAGAATTTCACCGCTTATTCGCACCTTCCCTagaggagaacgtga                                                                               >  1:5787883/1‑91 (MQ=1)
                                                                                acagctaagttAGAGAACACCAGCAGGCAAAACTTGAT‑ATGCCGTGCTGGTTGGTGCCGAGGAACCATTTCACCAGCGAATCAACGGTGCCGCCTgaggag  >  1:14310300/10‑101 (MQ=255)
                                                                                            |                                                                                         
CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGATTTCACCAGCGAATCAACGTTGCCGCCTGAGGAG  >  NC_007779/3748017‑3748198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.