New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 3987186 =NA (NA)173 (0.820) 114/178 NT 100% intergenic (‑732/‑31) slp/insH outer membrane lipoprotein/IS5 transposase and trans‑activator
?NC_007779 = 4009203 0 (0.000)coding (1379/1623 nt) yhiJ hypothetical protein

Only 100 of 185 total aligned reads displayed.

TGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGA  >  NC_007779/3987086‑3987278
                                                                                                    |                                                                                             
tGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaagg                                                                                               <  1:7816992/101‑1 (MQ=255)
tGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaagg                                                                                               <  1:3047912/101‑1 (MQ=255)
    gAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaaggaagg                                                                                           >  1:9194514/1‑101 (MQ=255)
    gAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaaggaagg                                                                                           >  1:10505650/1‑101 (MQ=255)
     aaaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAGTAGTGTCACCTAAGGAAGGt                                                                                          >  1:7782040/1‑101 (MQ=255)
     aaaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGt                                                                                          >  1:1273543/1‑101 (MQ=255)
      aaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTg                                                                                         >  1:3418863/1‑101 (MQ=255)
        aTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCg                                                                                       >  1:4140165/1‑101 (MQ=255)
         tAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGa                                                                                      >  1:5672943/1‑101 (MQ=255)
          aaaCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGaa                                                                                     <  1:10403229/101‑1 (MQ=255)
          aaaCCTTCGATTTGTGTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGaa                                                                                     <  1:7313539/101‑1 (MQ=255)
            aCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACa                                                                                   >  1:6447253/1‑101 (MQ=255)
            aCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACa                                                                                   <  1:246470/101‑1 (MQ=255)
              cTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAg                                                                                 >  1:4182372/1‑101 (MQ=255)
               ttCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGt                                                                                >  1:4643167/1‑101 (MQ=255)
                tCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTc                                                                               <  1:8638992/101‑1 (MQ=255)
                tCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTc                                                                               <  1:4506929/101‑1 (MQ=255)
                 cGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTACGGAAGGTGCGATCACGTcc                                                                              >  1:6962603/1‑101 (MQ=255)
                 cGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTcc                                                                              >  1:1888021/1‑101 (MQ=255)
                  gATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTccc                                                                             >  1:4044235/1‑101 (MQ=255)
                   aTTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCt                                                                            <  1:6602449/101‑1 (MQ=255)
                    tttgtttgTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTcccgg                                                                           <  1:755043/101‑3 (MQ=255)
                    tttgtttgTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTg                                                                           >  1:8819929/1‑101 (MQ=255)
                    tttgtttgTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTg                                                                           >  1:3035726/1‑101 (MQ=255)
                    tttgtttgTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTg                                                                           >  1:10696428/1‑101 (MQ=255)
                     ttgtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGa                                                                          <  1:3893439/101‑1 (MQ=255)
                     ttgtttgtCAAGATATTGTCCATCTTTATAGAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGa                                                                          <  1:1686819/101‑1 (MQ=255)
                      tgtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGat                                                                         <  1:6302572/101‑1 (MQ=255)
                       gtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGata                                                                        >  1:820777/1‑101 (MQ=255)
                        tttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGatat                                                                       >  1:2201305/1‑101 (MQ=255)
                         ttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATg                                                                      >  1:7015501/1‑101 (MQ=255)
                          tgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATga                                                                     <  1:10587452/101‑1 (MQ=255)
                          tgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATga                                                                     <  1:8066925/101‑1 (MQ=255)
                          tgtCAAGATATTGTCCATCTTTATATAATTTCGGGGTAGGGTGTTCCTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATga                                                                     <  1:9629374/101‑1 (MQ=255)
                           gtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATgag                                                                    >  1:6953230/1‑101 (MQ=255)
                           gtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATgag                                                                    <  1:9871554/101‑1 (MQ=255)
                             cAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAt                                                                  >  1:10052134/1‑101 (MQ=255)
                             cAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAt                                                                  <  1:1581535/101‑1 (MQ=255)
                             cAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGGCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAt                                                                  >  1:5740504/1‑101 (MQ=255)
                              aaGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATc                                                                 >  1:8941478/1‑101 (MQ=255)
                                gATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCAt                                                               <  1:4783827/101‑1 (MQ=255)
                                gATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCAt                                                               <  1:7639139/101‑1 (MQ=255)
                                 atatTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATg                                                              <  1:6158909/101‑1 (MQ=255)
                                   atTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGtt                                                            >  1:3806306/1‑101 (MQ=255)
                                     tGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTg                                                          <  1:3375601/101‑1 (MQ=255)
                                     tGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTg                                                          <  1:6946911/101‑1 (MQ=255)
                                     tGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTg                                                          >  1:3487427/1‑101 (MQ=255)
                                      gTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAGCAAGTCCCTGATATGAGATCATGTTTGt                                                         >  1:7395340/1‑101 (MQ=255)
                                      gTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGt                                                         <  1:1566034/101‑1 (MQ=255)
                                        ccATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑Ca                                                      <  1:823156/101‑1 (MQ=255)
                                         cATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CAt                                                     <  1:7758005/101‑1 (MQ=255)
                                         cATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CAt                                                     <  1:9044738/101‑1 (MQ=255)
                                          aTCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATc                                                    >  1:7621458/1‑101 (MQ=255)
                                           tCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCt                                                   <  1:1631777/101‑1 (MQ=255)
                                           tCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCt                                                   <  1:3995748/101‑1 (MQ=255)
                                            cTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTg                                                  <  1:4215224/101‑1 (MQ=255)
                                               tatataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAg                                               <  1:7091363/101‑1 (MQ=255)
                                                atataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGc                                              >  1:10565521/1‑101 (MQ=255)
                                                atataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGc                                              <  1:8965843/101‑1 (MQ=255)
                                                  ataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCa                                            <  1:6724532/101‑1 (MQ=255)
                                                  ataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCa                                            >  1:6408470/1‑101 (MQ=255)
                                                   taATTTGGGGGGAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGACGGTGCGAACAAGTCCCTGATACGAGAT‑AAGTTTGTCCATCTGGCGCAAt                                           >  1:355900/1‑101 (MQ=25)
                                                    aaTTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATa                                          <  1:7395194/101‑1 (MQ=255)
                                                    aaTTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATa                                          >  1:9364606/1‑101 (MQ=255)
                                                        tGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAAc                                      >  1:5944305/1‑101 (MQ=255)
                                                        tGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAAc                                      >  1:3188505/1‑101 (MQ=255)
                                                         gggggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGTGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACa                                     >  1:5266905/1‑101 (MQ=255)
                                                         gggggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACa                                     >  1:2196588/1‑101 (MQ=255)
                                                         gggggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACa                                     <  1:10289293/101‑1 (MQ=255)
                                                          ggggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAg                                    <  1:6930499/101‑1 (MQ=255)
                                                           gggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAgg                                   >  1:7013137/1‑101 (MQ=255)
                                                           gggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAgg                                   <  1:2690177/101‑1 (MQ=255)
                                                           gggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAgg                                   >  1:8574527/1‑101 (MQ=255)
                                                             gTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGt                                 <  1:2941464/101‑1 (MQ=255)
                                                             gTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGt                                 >  1:770688/1‑101 (MQ=255)
                                                              tAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGtt                                >  1:3579682/1‑101 (MQ=255)
                                                               aGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTtc                               >  1:4079238/1‑101 (MQ=255)
                                                                gggTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTtca                              <  1:9850534/101‑1 (MQ=255)
                                                                 ggTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTtcat                             >  1:468704/1‑101 (MQ=255)
                                                                 ggTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTtcat                             <  1:1140711/101‑1 (MQ=255)
                                                                   tgtTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTtcatca                           >  1:3097325/1‑101 (MQ=255)
                                                                   tgtTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTtcatca                           >  1:9237578/1‑101 (MQ=255)
                                                                    gtTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTcatcat                          >  1:3455712/1‑101 (MQ=255)
                                                                       cTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAg                       >  1:5646078/1‑101 (MQ=255)
                                                                       cTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAg                       <  1:5040418/101‑1 (MQ=255)
                                                                        tttATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGt                      >  1:1824095/1‑101 (MQ=255)
                                                                         ttATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGtc                     >  1:2279564/1‑101 (MQ=255)
                                                                           aTGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGtcat                   >  1:10023101/1‑101 (MQ=255)
                                                                             gTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatca                 <  1:4595360/101‑1 (MQ=255)
                                                                                 aaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACtt             >  1:1473031/1‑101 (MQ=40)
                                                                                     aTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCt         <  1:664770/101‑1 (MQ=37)
                                                                                      tAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCtt        <  1:5433364/101‑1 (MQ=35)
                                                                                       aGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTc       >  1:5700678/1‑101 (MQ=34)
                                                                                       aGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTc       <  1:2020685/101‑1 (MQ=34)
                                                                                       aGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCCTc       <  1:8319703/101‑1 (MQ=21)
                                                                                        gtgtCACCTCAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCg      <  1:9796318/101‑1 (MQ=18)
                                                                                         tgtCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGc     >  1:7952915/1‑101 (MQ=32)
                                                                                          gtCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGcc    >  1:1411278/1‑101 (MQ=32)
                                                                                          gtCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGcc    >  1:3133023/1‑101 (MQ=32)
                                                                                          gtCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGcc    >  1:10398668/1‑101 (MQ=32)
                                                                                                    |                                                                                             
TGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT‑CATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGA  >  NC_007779/3987086‑3987278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.