mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 3,333,429 | 1 | .→A | 1.1% | 7.8 0.0 ‑0.3 | 274 | intergenic (‑123/‑136) | rplU/ispB | 50S ribosomal protein L21/octaprenyl diphosphate synthase |
| * | NC_007779 | 1,881,068 | 1 | .→T | 1.1% | 7.1 ‑2.3 ‑0.3 | 268 | intergenic (‑99/+49) | yeaQ/yoaG | inner membrane protein/hypothetical protein |
| * | NC_007779 | 3,731,041 | 1 | .→T | 1.1% | 7.0 ‑0.5 ‑0.0 | 272 | intergenic (+91/‑43) | bglG/bglF | transcriptional antiterminator of the bgl operon/PTS system beta‑glucoside‑specific transporter subunits IIABC |
| * | NC_007779 | 657,963 | 1 | .→T | 1.0% | 6.7 0.0 ‑0.0 | 299 | intergenic (+40/+14) | cspE/crcB | DNA‑binding transcriptional repressor/inner membrane protein associated with chromosome condensation |
| * | NC_007779 | 3,561,760 | 1 | .→T | 1.0% | 6.0 ‑3.1 ‑0.0 | 292 | coding (253/786 nt) | yihW | DNA‑binding transcriptional regulator |
| * | NC_007779 | 3,193,538 | 1 | .→A | 0.7% | 2.9 0.0 ‑0.8 | 307 | intergenic (+357/+438) | yqiK/rfaE | hypothetical protein/fused heptose 7‑phosphate kinase and heptose 1‑phosphate adenyltransferase |
| * | NC_007779 | 1,938,748 | 1 | .→A | 0.8% | 2.8 0.0 ‑0.3 | 264 | coding (383/870 nt) | yebK | DNA‑binding transcriptional regulator |
| * | NC_007779 | 34,111 | 1 | .→T | 0.7% | 2.7 0.0 ‑0.3 | 290 | intergenic (+73/‑189) | carB/caiF | carbamoyl‑phosphate synthase large subunit/DNA‑binding transcriptional activator |
| * | NC_007779 | 2,899,215 | 1 | .→T | 0.8% | 2.7 0.0 ‑0.2 | 266 | intergenic (‑286/‑33) | ygcW/yqcE | deoxygluconate dehydrogenase/transporter |
| * | NC_007779 | 3,671,123 | 1 | .→A | 0.7% | 2.7 ‑0.7 ‑0.1 | 269 | coding (73/1266 nt) | rhlB | ATP‑dependent RNA helicase |
| * | NC_007779 | 4,601,746 | 1 | .→T | 0.8% | 2.7 0.0 ‑0.2 | 266 | intergenic (+54/+84) | yjjN/mdoB | oxidoreductase/phosphoglycerol transferase I |
| * | NC_007779 | 874,748 | 1 | .→G | 0.7% | 2.6 ‑0.7 ‑0.2 | 289 | coding (1348/2349 nt) | yliE | inner membrane protein |
| * | NC_007779 | 3,900,676 | 1 | .→G | 0.8% | 2.6 ‑1.6 ‑0.0 | 266 | coding (35/1254 nt) | avtA | valine‑pyruvate aminotransferase |
| * | NC_007779 | 4,000,535 | 1 | .→A | 0.7% | 2.6 ‑0.7 ‑0.8 | 278 | intergenic (‑231/‑160) | uspA/yhiO | universal stress global response regulator/universal stress (ethanol tolerance) protein B |
| * | NC_007779 | 3,126,793 | 1 | .→T | 0.6% | 2.4 ‑1.5 ‑0.1 | 323 | intergenic (‑116/‑135) | glcD/glcC | glycolate oxidase subunit, FAD‑linked/DNA‑binding transcriptional dual regulator |
| * | NC_007779 | 107,544 | 1 | .→T | 0.7% | 2.3 ‑0.7 ‑0.0 | 273 | intergenic (+70/‑161) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | NC_007779 | 3,385,700 | 1 | .→T | 0.7% | 2.3 ‑0.7 ‑0.0 | 281 | intergenic (+44/+12) | yhcN/yhcO | hypothetical protein/barnase inhibitor |
| * | NC_007779 | 686,664 | 0 | T→. | 0.9% | 2.2 ‑0.5 ‑0.3 | 352 | coding (428/741 nt) | gltJ | glutamate and aspartate transporter subunit |
| * | NC_007779 | 2,005,920 | 1 | .→A | 0.7% | 1.8 ‑1.4 ‑0.0 | 279 | intergenic (‑177/‑89) | fliC/fliD | flagellar filament structural protein/flagellar filament capping protein |
| * | NC_007779 | 3,530,308 | 1 | .→A | 0.8% | 0.1 ‑1.7 0.0 | 260 | intergenic (‑96/+53) | fieF/cpxP | zinc transporter/hypothetical protein |
| * | NC_007779 | 227,971 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2213/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,972 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2214/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,973 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2215/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,974 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2216/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,975 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2217/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,976 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2218/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,977 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2219/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,978 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2220/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,979 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2221/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,980 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2222/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,981 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2223/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,982 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2224/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,984 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2226/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,986 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2228/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,987 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2229/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,988 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2230/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,989 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2231/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,990 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2232/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,991 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2233/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,992 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2234/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,993 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2235/2904 nt) | rrlH | 23S ribosomal RNA |