mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 3,105,663 | 1 | .→T | 1.8% | 20.9 ‑1.5 ‑0.1 | 338 | intergenic (+37/+13) | nupG/speC | nucleoside transporter/ornithine decarboxylase |
| * | NC_007779 | 884,191 | 1 | .→T | 1.3% | 10.1 ‑2.9 ‑0.0 | 317 | coding (97/1233 nt) | cmr | multidrug efflux system protein |
| * | NC_007779 | 606,687 | 1 | .→T | 0.9% | 6.9 0.0 ‑0.0 | 322 | intergenic (‑81/‑372) | ybdK/hokE | gamma‑glutamyl:cysteine ligase/toxic polypeptide |
| * | NC_007779 | 3,193,538 | 1 | .→A | 0.9% | 6.9 0.0 ‑0.5 | 345 | intergenic (+357/+438) | yqiK/rfaE | hypothetical protein/fused heptose 7‑phosphate kinase and heptose 1‑phosphate adenyltransferase |
| * | NC_007779 | 3,772,839 | 1 | .→A | 1.0% | 6.9 ‑0.5 ‑1.7 | 314 | intergenic (‑152/‑154) | yidQ/ibpA | outer membrane protein/heat shock chaperone |
| * | NC_007779 | 2,724,454 | 1 | .→T | 0.9% | 6.1 0.0 ‑0.3 | 334 | intergenic (‑52/+271) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA |
| * | NC_007779 | 2,694,234 | 1 | .→G | 0.6% | 2.7 ‑1.5 ‑1.0 | 315 | intergenic (‑35/‑361) | purL/yfhD | phosphoribosylformyl‑glycineamide synthetase/transglycosylase |
| * | NC_007779 | 3,824,606 | 1 | .→T | 0.6% | 2.7 ‑0.7 ‑0.3 | 325 | intergenic (‑867/‑41) | yicC/pyrE | hypothetical protein/orotate phosphoribosyltransferase |
| * | NC_007779 | 1,641,154 | 1 | .→T | 0.6% | 2.6 0.0 ‑0.0 | 329 | coding (88/498 nt) | ydfP | hypothetical protein |
| * | NC_007779 | 2,101,940 | 1 | .→A | 0.6% | 2.6 0.0 ‑0.1 | 321 | intergenic (‑190/+59) | ugd/gnd | UDP‑glucose 6‑dehydrogenase/gluconate‑6‑phosphate dehydrogenase, decarboxylating |
| * | NC_007779 | 3,085,177 | 1 | .→A | 0.6% | 2.6 ‑0.7 ‑0.1 | 315 | coding (130/252 nt) | yqgD | inner membrane protein |
| * | NC_007779 | 764,592 | 1 | .→G | 0.6% | 2.5 0.0 ‑0.0 | 323 | coding (1157/1167 nt) | sucC | succinyl‑CoA synthetase subunit beta |
| * | NC_007779 | 1,410,956 | 1 | .→T | 0.6% | 2.5 ‑1.5 ‑0.3 | 327 | intergenic (+209/‑269) | ydaN/dbpA | Zn(II) transporter/ATP‑dependent RNA helicase‑specific for 23S rRNA |
| * | NC_007779 | 2,618,856 | 1 | .→A | 0.6% | 2.4 0.0 ‑0.9 | 321 | intergenic (‑40/+46) | uraA/upp | uracil transporter/uracil phosphoribosyltransferase |
| * | NC_007779 | 3,576,400 | 1 | .→A | 0.6% | 2.4 ‑0.7 ‑0.2 | 326 | intergenic (‑166/+51) | yihL/bipA | DNA‑binding transcriptional regulator/GTP‑binding protein |
| * | NC_007779 | 3,654,011 | 1 | .→C | 0.6% | 2.4 ‑1.8 ‑0.3 | 327 | noncoding (65/87 nt) | leuT | tRNA‑Leu |
| * | NC_007779 | 4,211,322 | 1 | .→A | 0.6% | 1.9 0.0 ‑0.0 | 319 | intergenic (‑142/‑332) | yrdA/rrsE | hypothetical protein/16S ribosomal RNA |
| * | NC_007779 | 1,156,694 | 1 | .→A | 0.6% | 1.7 ‑0.7 ‑0.0 | 324 | coding (1006/1023 nt) | yceG | aminodeoxychorismate lyase |
| * | NC_007779 | 2,850,251 | 1 | .→G | 0.6% | 0.5 ‑0.7 ‑0.0 | 361 | coding (595/873 nt) | hypB | GTP hydrolase involved in nickel liganding into hydrogenases |
| * | NC_007779 | 884,179 | 1 | .→G | 0.6% | 0.3 ‑1.5 ‑0.0 | 312 | coding (85/1233 nt) | cmr | multidrug efflux system protein |
| * | NC_007779 | 4,512,489 | 0 | G→T | 100.0% | ‑0.1 | 1 | S270* (TCA→TAA) | insI | IS30 transposase |
| * | NC_007779 | 4,512,475 | 0 | G→A | 100.0% | ‑0.2 | 1 | L275F (CTT→TTT) | insI | IS30 transposase |
| * | NC_007779 | 4,512,491 | 0 | G→C | 100.0% | ‑0.2 | 1 | V269V (GTC→GTG) | insI | IS30 transposase |
| * | NC_007779 | 1,050,561 | 0 | T→A | 100.0% | ‑0.5 | 1 | I38N (ATC→AAC) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,562 | 0 | C→A | 100.0% | ‑0.5 | 1 | I38I (ATC→ATA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,563 | 0 | G→A | 100.0% | ‑0.5 | 1 | V39I (GTC→ATC) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,564 | 0 | T→A | 100.0% | ‑0.5 | 1 | V39D (GTC→GAC) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,565 | 0 | C→A | 100.0% | ‑0.5 | 1 | V39V (GTC→GTA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,566 | 0 | T→A | 100.0% | ‑0.5 | 1 | C40S (TGC→AGC) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,567 | 0 | G→A | 100.0% | ‑0.5 | 1 | C40Y (TGC→TAC) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,568 | 0 | C→A | 100.0% | ‑0.5 | 1 | C40* (TGC→TGA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,569 | 0 | G→A | 100.0% | ‑0.5 | 1 | A41T (GCG→ACG) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,570 | 0 | C→A | 100.0% | ‑0.5 | 1 | A41E (GCG→GAG) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,571 | 0 | G→A | 100.0% | ‑0.5 | 1 | A41A (GCG→GCA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,572 | 0 | G→A | 100.0% | ‑0.5 | 1 | E42K (GAA→AAA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,576 | 0 | T→A | 100.0% | ‑0.5 | 1 | M43K (ATG→AAG) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,577 | 0 | G→A | 100.0% | ‑0.5 | 1 | M43I (ATG→ATA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,578 | 0 | G→A | 100.0% | ‑0.5 | 1 | D44N (GAC→AAC) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,580 | 0 | C→A | 100.0% | ‑0.5 | 1 | D44E (GAC→GAA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,581 | 0 | G→A | 100.0% | ‑0.5 | 1 | E45K (GAA→AAA) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,584 | 0 | C→A | 100.0% | ‑0.5 | 1 | Q46K (CAG→AAG) | insB | IS1 transposase InsAB' |