mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 107,544 | 1 | .→T | 1.5% | 16.6 0.0 ‑0.1 | 325 | intergenic (+70/‑161) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | NC_007779 | 1,716,031 | 1 | .→T | 1.2% | 11.8 ‑3.0 ‑0.4 | 324 | intergenic (+46/‑60) | ydgR/gst | transporter/glutathionine S‑transferase |
| * | NC_007779 | 4,644,244 | 1 | .→T | 1.1% | 9.9 ‑0.5 ‑0.0 | 352 | intergenic (+34/+26) | creD/arcA | inner membrane protein/DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA |
| * | NC_007779 | 2,387,486 | 1 | .→A | 1.0% | 6.5 0.0 ‑0.0 | 315 | coding (104/1212 nt) | elaD | hypothetical protein |
| * | NC_007779 | 3,519,465 | 1 | .→A | 0.6% | 2.7 ‑0.7 ‑0.5 | 312 | coding (7/1509 nt) | glpK | glycerol kinase |
| * | NC_007779 | 3,576,400 | 1 | .→A | 0.6% | 2.6 ‑1.5 ‑0.7 | 330 | intergenic (‑166/+51) | yihL/bipA | DNA‑binding transcriptional regulator/GTP‑binding protein |
| * | NC_007779 | 3,653,996 | 1 | .→G | 0.6% | 2.6 0.0 ‑0.8 | 351 | noncoding (80/87 nt) | leuT | tRNA‑Leu |
| * | NC_007779 | 4,477,098 | 1 | .→A | 0.6% | 2.6 0.0 ‑0.1 | 320 | coding (116/135 nt) | pyrL | pyrBI operon leader peptide |
| * | NC_007779 | 194,839 | 1 | .→T | 0.6% | 2.5 ‑1.4 ‑1.2 | 330 | intergenic (+122/‑64) | dxr/ispU | 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase/undecaprenyl pyrophosphate synthase |
| * | NC_007779 | 1,759,411 | 1 | .→T | 0.6% | 2.5 ‑0.7 ‑0.7 | 316 | intergenic (+40/+24) | lpp/ynhG | murein lipoprotein/hypothetical protein |
| * | NC_007779 | 2,618,856 | 1 | .→A | 0.6% | 2.5 ‑1.5 ‑0.5 | 333 | intergenic (‑40/+46) | uraA/upp | uracil transporter/uracil phosphoribosyltransferase |
| * | NC_007779 | 3,983,764 | 1 | .→A | 0.6% | 2.5 0.0 ‑1.3 | 314 | coding (90/333 nt) | hdeA | stress response protein acid‑resistance protein |
| * | NC_007779 | 176,172 | 1 | .→T | 0.6% | 2.4 ‑1.4 ‑0.1 | 320 | coding (1066/1422 nt) | clcA | chloride channel, voltage‑gated |
| * | NC_007779 | 2,410,289 | 1 | .→A | 0.6% | 2.4 0.0 ‑0.2 | 318 | intergenic (‑547/+84) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/DNA‑binding transcriptional repressor |
| * | NC_007779 | 3,824,606 | 1 | .→T | 0.6% | 2.3 ‑1.5 ‑0.1 | 335 | intergenic (‑867/‑41) | yicC/pyrE | hypothetical protein/orotate phosphoribosyltransferase |
| * | NC_007779 | 1,225,577 | 1 | .→G | 0.6% | 2.2 ‑1.4 ‑0.0 | 322 | intergenic (+93/+279) | ycgI/minE | hypothetical protein/cell division topological‑specificity factor |
| * | NC_007779 | 1,122,800 | 1 | .→A | 0.6% | 2.0 ‑1.7 ‑0.3 | 333 | intergenic (‑268/+19) | yceP/dinI | hypothetical protein/DNA damage‑inducible protein I |
| * | NC_007779 | 1,097,764 | 1 | .→A | 0.3% | 1.8 ‑0.7 ‑0.5 | 676 | intergenic (+513/+42) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 2,410,314 | 1 | .→C | 0.9% | 1.4 ‑2.3 0.0 | 345 | intergenic (‑572/+59) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/DNA‑binding transcriptional repressor |
| * | NC_007779 | 1,716,030 | 1 | .→T | 0.6% | 0.2 ‑1.5 0.0 | 341 | intergenic (+45/‑61) | ydgR/gst | transporter/glutathionine S‑transferase |
| * | NC_007779 | 580,462 | 0 | G→C | 100.0% | ‑0.1 | 1 | V136L (GTG→CTG) | nohB | DNA packaging protein |
| * | NC_007779 | 4,212,722 | 0 | C→A | 100.0% | ‑0.1 | 1 | noncoding (1069/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 580,467 | 0 | G→C | 100.0% | ‑0.2 | 1 | Q137H (CAG→CAC) | nohB | DNA packaging protein |
| * | NC_007779 | 580,469 | 0 | G→A | 100.0% | ‑0.2 | 1 | R138Q (CGG→CAG) | nohB | DNA packaging protein |
| * | NC_007779 | 730,441 | 0 | T→C | 100.0% | ‑0.2 | 1 | V146A (GTG→GCG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 4,213,852 | 0 | G→T | 100.0% | ‑0.2 | 1 | noncoding (220/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 228,795 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (40/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,796 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (41/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,797 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (42/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,798 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (43/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,799 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (44/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,802 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (47/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,803 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (48/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,804 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (49/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,806 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (51/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,809 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (54/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,810 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (55/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,811 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (56/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,815 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (60/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,816 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (61/120 nt) | rrfH | 5S ribosomal RNA |
| * | NC_007779 | 228,817 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (62/120 nt) | rrfH | 5S ribosomal RNA |