New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	2941317 =	290 (1.200)	5 (0.020)	5/180	NT	1.7%	intergenic (‑94/+257)	gcvA/ygdI	DNA‑binding transcriptional dual regulator/hypothetical protein
	?	NC_007779	= 3129996	NA (NA)					intergenic (+146/+1)	insH/yghQ	IS5 transposase and trans‑activator/inner membrane protein

CATTCCGATAAAACTTTTCGTTCCGGCTCAGGAAGTGCCGCCACTATAGGTATTTGCTGGTAGAAGCTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/2941387‑2941317 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTC  <  NC_007779/3129996‑3129919                                                                                                                                                       CATTCCGATAAAACTTTTCGTTCCGGCTCATGAAGTGCCGCCACTATAGGTATTTGCTGGTAGAAGCTCAAGGAAGGTGCGAATAAGCGGGGAAATTCTTC                                                  >  1:11703221/1‑101            AACTTTTCGTTCCGGCTCAGGAAGTGCCGCCACTATAGGTATTTGCTGGTAGAAGCTCAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTC                                       >  1:3587770/1‑101                 TTCGTTCCGGCTCAGGAAGTGCCGCCACTATAGGTATTTGCTGGTAGAAGCTCAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCA                                  >  1:8126144/1‑101                        CGGCTCAGGAAGTGCCGCCACTATAGGTATTTGCTGGTAGAAGCTCAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATT                           >  1:1511162/1‑101                                                 GGTATTTGCTGGTAGAAGCTCAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTC  <  1:7058700/101‑1                                                                                                                                                       CATTCCGATAAAACTTTTCGTTCCGGCTCAGGAAGTGCCGCCACTATAGGTATTTGCTGGTAGAAGCTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/2941387‑2941317 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTC  <  NC_007779/3129996‑3129919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.