BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	1397758 =	NA (NA)	198 (0.820)	111/180	NT	100%	intergenic (‑122/‑32)	ynaI/insH	inner membrane protein/IS5 transposase and trans‑activator
*	?	NC_007779	1672777 =	0 (0.000)	198 (0.820)	111/180	NT	100%	intergenic (+111/‑313)	ynfM/asr	transporter/acid shock‑inducible periplasmic protein

Only 100 of 265 total aligned reads displayed.

ATAATTGTCGTCATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGAC  >  NC_007779/1397658‑1397852

aTAATTGTCGTCATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTaag                                                                                                <  1:5246327/101‑1 (MQ=255)

aTAATTGTCGTCATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTaag                                                                                                <  1:244584/101‑1 (MQ=255)

aTAATTGTCGTCATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTaag                                                                                                >  1:2643136/1‑101 (MQ=255)

 tAATTGTCGTCATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTaagg                                                                                               >  1:10744286/1‑101 (MQ=255)

   aTTGTCGTCATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTaaggaa                                                                                             <  1:4886952/101‑1 (MQ=255)

   aTTGTCGTCATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTaaggaa                                                                                             <  1:4419011/101‑1 (MQ=255)

     tGTCGTCATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTaaggaagg                                                                                           <  1:289019/101‑1 (MQ=255)

      gtcgtcATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGt                                                                                          <  1:11941489/101‑1 (MQ=255)

       tcgtcATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTg                                                                                         <  1:9363043/101‑1 (MQ=255)

       tcgtcATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTg                                                                                         <  1:5720198/101‑1 (MQ=255)

       tcgtcATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTg                                                                                         <  1:2291929/101‑1 (MQ=255)

        cgtcATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGc                                                                                        >  1:8267226/1‑101 (MQ=255)

        cgtcATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGc                                                                                        <  1:4135721/101‑1 (MQ=255)

         gtcATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCg                                                                                       <  1:8032228/101‑1 (MQ=255)

         gtcATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCg                                                                                       >  1:2595986/1‑101 (MQ=255)

          tcATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGa                                                                                      >  1:3139737/1‑101 (MQ=255)

            aTGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAAc                                                                                    <  1:876663/101‑1 (MQ=255)

               ccGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAg                                                                                 <  1:7026855/101‑1 (MQ=255)

                 cgAAACCCCTGGGCGGGGTATTTTTCCCCGGACAATTCATCCAGATAATCAATAGCAAGGAAAGGAAGTACCACCA‑TAGCTAAGGAAGGTGCGAACAAGTc                                                                               <  1:4994849/100‑1 (MQ=255)

                  gAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGATGGTGCGAACAAGTcc                                                                              >  1:8304073/1‑101 (MQ=255)

                   aaaCCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTccc                                                                             >  1:12217355/1‑101 (MQ=255)

                    aaCCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCt                                                                            <  1:12050415/101‑1 (MQ=255)

                      ccccTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGa                                                                          >  1:11524659/1‑101 (MQ=255)

                       cccTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGat                                                                         <  1:4661572/101‑1 (MQ=255)

                       cccTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGat                                                                         <  1:11495234/101‑1 (MQ=255)

                        ccTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGata                                                                        >  1:11999807/1‑101 (MQ=255)

                          tGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATg                                                                      >  1:3420870/1‑101 (MQ=255)

                              ggggCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAt                                                                  >  1:6139930/1‑101 (MQ=255)

                              ggggCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAt                                                                  <  1:9817516/101‑1 (MQ=255)

                              ggggCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAt                                                                  <  1:11120217/101‑1 (MQ=255)

                                   tATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGt                                                             >  1:3782024/1‑101 (MQ=255)

                                    aTTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGtt                                                            <  1:7259348/101‑1 (MQ=255)

                                     ttttACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGttt                                                           <  1:4978782/101‑1 (MQ=255)

                                     ttttACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGttt                                                           >  1:10186490/1‑101 (MQ=255)

                                      tttACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTg                                                          <  1:8645176/101‑1 (MQ=255)

                                       ttACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGt                                                         >  1:12123653/1‑101 (MQ=255)

                                       ttACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGt                                                         <  1:4115816/101‑1 (MQ=255)

                                          ccGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCAt                                                      <  1:6469083/101‑1 (MQ=255)

                                           cgc‑gACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATc                                                     <  1:7974836/101‑1 (MQ=255)

                                            gc‑gACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCt                                                    <  1:1078133/101‑1 (MQ=255)

                                            gc‑gACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCt                                                    >  1:7692484/1‑101 (MQ=255)

                                               gACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTgg                                                  <  1:5146917/101‑1 (MQ=255)

                                                aCAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGa                                                 <  1:4577815/101‑1 (MQ=255)

                                                aCAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGa                                                 <  1:6568873/101‑1 (MQ=255)

                                                aCAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGa                                                 <  1:1169391/101‑1 (MQ=255)

                                                aCAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGa                                                 >  1:10241127/1‑101 (MQ=255)

                                                 cAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAg                                                <  1:3533604/101‑1 (MQ=255)

                                                 cAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAg                                                <  1:12225052/101‑1 (MQ=255)

                                                 cAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAg                                                <  1:10458380/101‑1 (MQ=255)

                                                  aaTTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGc                                               >  1:2255526/1‑101 (MQ=255)

                                                    ttcattcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCa                                             <  1:956285/101‑1 (MQ=255)

                                                       attcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAg                                          >  1:11367649/1‑101 (MQ=255)

                                                       attcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAg                                          >  1:9715409/1‑101 (MQ=255)

                                                        ttcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGa                                         >  1:10909732/1‑101 (MQ=255)

                                                        ttcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGa                                         >  1:3588625/1‑101 (MQ=255)

                                                         tcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGaa                                        <  1:5410123/101‑1 (MQ=255)

                                                          caGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAc                                       >  1:5663208/1‑101 (MQ=255)

                                                           aGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACa                                      >  1:7103687/1‑101 (MQ=255)

                                                           aGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACa                                      <  1:10353096/101‑1 (MQ=255)

                                                           aGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACa                                      >  1:817231/1‑101 (MQ=255)

                                                             atcatcAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAgg                                    >  1:8543921/1‑101 (MQ=255)

                                                             atcatcAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAgg                                    <  1:10593006/101‑1 (MQ=255)

                                                             atcatcAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAgg                                    >  1:1250018/1‑101 (MQ=255)

                                                                atcaATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGtt                                 >  1:1083094/1‑101 (MQ=255)

                                                                 tcaATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtc                                >  1:7390293/1‑101 (MQ=255)

                                                                 tcaATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtc                                <  1:4436658/101‑1 (MQ=255)

                                                                 tcaATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtc                                <  1:2754509/101‑1 (MQ=255)

                                                                  caATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtca                               <  1:611497/101‑1 (MQ=255)

                                                                  caATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtca                               <  1:8944847/101‑1 (MQ=255)

                                                                   aaTAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAATAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtcat                              >  1:7511892/1‑101 (MQ=255)

                                                                   aaTAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTTGAGCCATAGAACAGGGTtcat                              >  1:3285238/1‑101 (MQ=255)

                                                                   aaTAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtcat                              <  1:6806126/101‑1 (MQ=255)

                                                                     gaGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtcatca                            <  1:1549863/100‑1 (MQ=255)

                                                                      aGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                           <  1:6264954/101‑1 (MQ=255)

                                                                      aGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                           >  1:4250409/1‑101 (MQ=255)

                                                                      aGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                           <  1:5038960/101‑1 (MQ=255)

                                                                        tCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGa                         >  1:6895886/1‑101 (MQ=255)

                                                                         cAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAg                        >  1:8939859/1‑101 (MQ=255)

                                                                         cAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAg                        <  1:7750482/101‑1 (MQ=255)

                                                                         cAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAg                        <  1:1360276/101‑1 (MQ=255)

                                                                          aGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGt                       >  1:10219817/1‑101 (MQ=255)

                                                                            ggaaggaaGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtca                     <  1:10111411/101‑1 (MQ=255)

                                                                            ggaaggaaGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtca                     <  1:5740225/101‑1 (MQ=255)

                                                                               aggaagTAGCAACATTAGCTCAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatca                  <  1:8794749/101‑1 (MQ=255)

                                                                               aggaagTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatca                  <  1:7413114/101‑1 (MQ=255)

                                                                               aggaagTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatca                  <  1:1784420/101‑1 (MQ=255)

                                                                                 gaagTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAAc                <  1:6996522/101‑1 (MQ=255)

                                                                                   agTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACtt              <  1:8388098/101‑1 (MQ=255)

                                                                                   agTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACtt              >  1:1704455/1‑101 (MQ=255)

                                                                                   agTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACtt              <  1:5986749/101‑1 (MQ=255)

                                                                                   agTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACtt              <  1:4726969/101‑1 (MQ=255)

                                                                                     tAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTAc            <  1:118156/101‑1 (MQ=40)

                                                                                       gCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCt          >  1:11198944/1‑101 (MQ=39)

                                                                                       gCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCt          >  1:8964201/1‑101 (MQ=39)

                                                                                        cAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCtt         <  1:1473623/101‑1 (MQ=38)

                                                                                           cATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGc      >  1:5499582/1‑101 (MQ=34)

                                                                                           cATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGc      <  1:6372434/101‑1 (MQ=34)

                                                                                            aTTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGcc     >  1:8483291/1‑101 (MQ=33)

                                                                                            aTTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGcc     <  1:1842739/101‑1 (MQ=33)

                                                                                            aTTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGcc     <  1:2493734/101‑1 (MQ=33)

ATAATTGTCGTCATGCCGGAAACCCCTGGCGGGGCTATTTTACCGC‑GACAATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGAC  >  NC_007779/1397658‑1397852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.