mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 2,865,248 | 0 | C→. | 1.7% | 32.9 ‑1.3 ‑0.4 | 780 | coding (843/876 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| * | NC_007779 | 2,753,432 | 1 | .→A | 1.2% | 12.1 ‑0.4 ‑0.6 | 325 | intergenic (‑12/‑120) | yfjG/smpB | hypothetical protein/trans‑translation protein |
| * | NC_007779 | 4,342,788 | 0 | A→. | 0.9% | 7.7 ‑1.0 ‑0.0 | 534 | intergenic (‑181/+144) | adiY/adiA | DNA‑binding transcriptional activator/biodegradative arginine decarboxylase |
| * | NC_007779 | 107,544 | 1 | .→T | 0.9% | 7.4 ‑0.5 ‑0.7 | 317 | intergenic (+70/‑161) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | NC_007779 | 4,342,787 | 1 | .→A | 0.6% | 6.2 ‑1.2 ‑0.1 | 525 | intergenic (‑180/+145) | adiY/adiA | DNA‑binding transcriptional activator/biodegradative arginine decarboxylase |
| * | NC_007779 | 677,244 | 0 | T→. | 0.8% | 4.8 0.0 ‑0.2 | 507 | coding (112/708 nt) | ybeR | hypothetical protein |
| * | NC_007779 | 4,351,654 | 0 | T→. | 0.7% | 4.6 ‑0.5 ‑0.5 | 567 | coding (351/1647 nt) | fumB | anaerobic class I fumarate hydratase |
| * | NC_007779 | 4,328,528 | 0 | T→. | 0.7% | 3.9 ‑3.1 ‑0.3 | 591 | coding (503/1017 nt) | phnD | phosphonate/organophosphate ester transporter subunit |
| * | NC_007779 | 606,687 | 1 | .→T | 0.6% | 2.7 ‑1.4 ‑0.5 | 339 | intergenic (‑81/‑372) | ybdK/hokE | gamma‑glutamyl:cysteine ligase/toxic polypeptide |
| * | NC_007779 | 3,354,146 | 1 | .→A | 0.7% | 2.6 ‑0.7 ‑1.0 | 305 | intergenic (‑241/‑341) | yhcC/gltB | Fe‑S oxidoreductase/glutamate synthase, large subunit |
| * | NC_007779 | 4,477,098 | 1 | .→A | 0.6% | 2.6 ‑0.7 ‑1.2 | 314 | coding (116/135 nt) | pyrL | pyrBI operon leader peptide |
| * | NC_007779 | 1,097,402 | 1 | .→A | 0.5% | 2.5 0.0 ‑0.0 | 403 | intergenic (+151/+404) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 455,713 | 1 | .→T | 0.6% | 2.4 0.0 ‑0.6 | 341 | intergenic (+58/‑188) | tig/clpP | peptidyl‑prolyl cis/trans isomerase/proteolytic subunit of ClpA‑ClpP and ClpX‑ClpP ATP‑dependent serine proteases |
| * | NC_007779 | 2,089,250 | 1 | .→T | 0.6% | 2.4 ‑1.4 ‑0.0 | 311 | intergenic (‑51/+216) | yeeF/yeeY | amino‑acid transporter/DNA‑binding transcriptional regulator |
| * | NC_007779 | 2,005,920 | 1 | .→A | 0.6% | 2.2 0.0 ‑0.0 | 357 | intergenic (‑177/‑89) | fliC/fliD | flagellar filament structural protein/flagellar filament capping protein |
| * | NC_007779 | 1,097,764 | 1 | .→A | 0.3% | 2.1 ‑1.7 ‑0.1 | 608 | intergenic (+513/+42) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 685,600 | 0 | T→. | 0.5% | 1.8 ‑1.4 ‑0.4 | 581 | coding (78/726 nt) | gltL | glutamate and aspartate transporter subunit |
| * | NC_007779 | 2,724,454 | 1 | .→T | 0.6% | 1.6 0.0 ‑0.2 | 328 | intergenic (‑52/+271) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA |
| * | NC_007779 | 4,329,972 | 1 | .→G | 0.4% | 1.5 ‑1.4 ‑0.1 | 516 | intergenic (‑129/+4) | phnC/phnB | phosphonate/organophosphate ester transporter subunit/hypothetical protein |
| * | NC_007779 | 3,751,752 | 0 | C→G | 100.0% | 1.3 | 1 | intergenic (+113/+154) | insH/tnaC | IS5 element protein/tryptophanase leader peptide |
| * | NC_007779 | 4,015,570 | 0 | T→A | 100.0% | 1.3 | 1 | P156P (CCA→CCT) | yhhI | transposase |
| * | NC_007779 | 4,015,582 | 0 | A→G | 100.0% | 1.3 | 1 | I152I (ATT→ATC) | yhhI | transposase |
| * | NC_007779 | 687,133 | 0 | A→C | 1.4% | 0.4 ‑25.3 0.0 | 550 | intergenic (‑42/+128) | gltJ/gltI | glutamate and aspartate transporter subunit/glutamate and aspartate transporter subunit |
| * | NC_007779 | 1,050,592 | 0 | A→C | 100.0% | ‑0.1 | 1 | G48G (GGA→GGC) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,595 | 0 | C→T | 100.0% | ‑0.1 | 1 | Y49Y (TAC→TAT) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,643 | 0 | G→T | 100.0% | ‑0.1 | 1 | R65S (AGG→AGT) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 223,998 | 0 | A→G | 100.0% | ‑0.2 | 1 | noncoding (228/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_007779 | 224,034 | 0 | C→A | 100.0% | ‑0.2 | 1 | noncoding (264/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_007779 | 1,572,750 | 0 | T→C | 100.0% | ‑0.2 | 1 | E337G (GAA→GGA) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 4,211,602 | 0 | G→A | 100.0% | ‑0.2 | 1 | intergenic (‑422/‑52) | yrdA/rrsE | hypothetical protein/16S ribosomal RNA |
| * | NC_007779 | 4,212,596 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (943/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,597 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (944/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,598 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (945/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,600 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (947/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,601 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (948/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,603 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (950/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,604 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (951/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,605 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (952/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,606 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (953/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,607 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (954/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,608 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (955/1542 nt) | rrsE | 16S ribosomal RNA |