Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	NC_007779	2,865,278	+TTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGC	53.4%	coding (813/876 nt)	rpoS ←	RNA polymerase, sigma S (sigma 38) factor

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	2865229 =	144 (0.510)	90 (0.600)	47/96	NT	53.4%	coding (862/876 nt)	rpoS	RNA polymerase, sigma S (sigma 38) factor
	?	NC_007779	= 2865278	150 (0.540)					coding (813/876 nt)	rpoS	RNA polymerase, sigma S (sigma 38) factor

GCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/2865276‑2865229 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAA  <  NC_007779/2865278‑2865233                                                 ||||||||||||||||||||||||||||||||||||||||||                                               GCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCTGTTTGCGCGAAACCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGC                                     <  1:4408778/101‑1    GTTTGCGCGAAATCCTGCAAACACAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCG                                  >  1:9488428/1‑101       TGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAA                               <  1:9952812/101‑1       TGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAA                               >  1:5947904/1‑101       TGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAA                               <  1:811474/101‑1       TGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAA                               <  1:931294/101‑1         CGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATC                             >  1:6897875/1‑101         CGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATC                             >  1:12676200/1‑101         CGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATC                             >  1:8911282/1‑101         CGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATC                             >  1:9985226/1‑101          GCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCC                            >  1:9200437/1‑101          GCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCC                            <  1:14015905/101‑1          GCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCC                            <  1:3016060/101‑1          GCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCC                            <  1:9882922/101‑1          GCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCC                            <  1:10676537/101‑1           CGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCT                           <  1:77346/101‑1            GAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTG                          <  1:13828019/101‑1            GAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTG                          >  1:1725762/1‑101             AAATCCTGCAAACGCAGGGGCTGAATATGGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGC                         >  1:9397140/1‑101              AATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCA                        >  1:2918229/1‑101              AATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCA                        <  1:3536149/101‑1              AATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCA                        >  1:4909106/1‑101               ATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAA                       <  1:2238576/101‑1                TCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAA                      >  1:2252700/1‑101                TCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAA                      >  1:10886348/1‑101                 CCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAAC                     >  1:14052207/1‑101                 CCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAAC                     <  1:2187046/101‑1                 CCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAAC                     <  1:3940733/101‑1                 CCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAAC                     <  1:3803844/101‑1                 CCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAAC                     <  1:10967911/101‑1                 CCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAAC                     <  1:3786286/101‑1                  CTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACG                    <  1:4866332/101‑1                  CTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACG                    >  1:3815391/1‑101                  CTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACG                    <  1:9028022/101‑1                  CTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACG                    >  1:10438849/1‑101                  CTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACG                    <  1:2063278/101‑1                   TGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGC                   <  1:13093818/101‑1                   TGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGC                   >  1:10498317/1‑101                    GCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCA                  <  1:8982650/101‑1                    GCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCA                  <  1:4371851/101‑1                     CAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAG                 <  1:7237602/101‑1                     CAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAG                 >  1:770057/1‑101                     CAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAG                 <  1:4586914/101‑1                     CAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAG                 <  1:448797/101‑1                     CAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAG                 <  1:11220826/101‑1                      AAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGG                >  1:8675176/1‑101                      AAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGG                <  1:2265121/101‑1                      AAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGG                >  1:3037919/1‑101                      AAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGG                >  1:3037920/1‑101                      AAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGG                >  1:6846103/1‑101                       AACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGG               <  1:8716214/101‑1                       AACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGG               <  1:8964826/101‑1                       AACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGG               <  1:7668944/101‑1                       AACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGG               >  1:5956833/1‑101                       AACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGG               <  1:9295293/101‑1                       AACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGG               >  1:3165493/1‑101                         CGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGC             >  1:12753635/1‑101                         CGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGC             <  1:4988725/101‑1                          GCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCT            >  1:12081162/1‑101                          GCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCT            <  1:11816207/101‑1                          GCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCT            <  1:2195724/101‑1                          GCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCT            <  1:6969181/101‑1                          GCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCT            >  1:3218539/1‑101                          GCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCT            <  1:4926713/101‑1                           CAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTG           >  1:5588026/1‑101                           CAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTG           <  1:5902127/101‑1                            AGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGA          >  1:490519/1‑101                            AGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGA          >  1:4635385/1‑101                             GGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAA         <  1:12106899/101‑1                             GGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAA         <  1:5699086/101‑1                             GGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAA         <  1:11679940/101‑1                             GGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAA         >  1:7997381/1‑101                              GGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAAT        <  1:349562/101‑1                              GGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAAT        <  1:3805739/101‑1                              GGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAAT        <  1:12947469/101‑1                              GGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAAT        >  1:9778587/1‑101                               GGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATA       <  1:7830176/101‑1                               GGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATA       >  1:5878765/1‑101                               GGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATA       <  1:1841228/101‑1                                GCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATAT      >  1:3436640/1‑101                                GCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATAT      <  1:8021082/101‑1                                 CTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATC     <  1:8584759/101‑1                                 CTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATC     <  1:12220980/101‑1                                 CTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATC     >  1:5067321/1‑101                                  TGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCG    <  1:3702389/101‑1                                  TGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCG    >  1:2991699/1‑101                                  TGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCG    >  1:10958904/1‑101                                  TGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCG    <  1:10723044/101‑1                                  TGAATATCGAAGCGCCGTTTGCGCGAAATCCGGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATCTCG    >  1:13184297/1‑101                                    AATATCGAAGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGCCGTTTGCGCAAAATCCTGCAAACGCAGGGGCTGAATATCGAA  <  1:5079347/101‑1                                                 ||||||||||||||||||||||||||||||||||||||||||                                               GCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/2865276‑2865229 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAA  <  NC_007779/2865278‑2865233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.