New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 3987186 =NA (NA)285 (1.030) 135/178 NT 100% intergenic (‑732/‑31) slp/insH outer membrane lipoprotein/IS5 transposase and trans‑activator
?NC_007779 = 4009203 0 (0.000)coding (1379/1623 nt) yhiJ hypothetical protein

Only 100 of 271 total aligned reads displayed.

TGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGA  >  NC_007779/3987086‑3987278
                                                                                                    |                                                                                            
tGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaagg                                                                                              >  1:1681434/1‑101 (MQ=255)
   tGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaaggaag                                                                                           >  1:742284/1‑101 (MQ=255)
   tGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaaggaag                                                                                           <  1:12535492/101‑1 (MQ=255)
    gAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaaggaagg                                                                                          >  1:2703226/1‑101 (MQ=255)
     aaaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGt                                                                                         >  1:36345/1‑101 (MQ=255)
     aaaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGt                                                                                         <  1:12716238/101‑1 (MQ=255)
     aaaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGt                                                                                         >  1:4514768/1‑101 (MQ=255)
     aaaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGt                                                                                         <  1:4264207/101‑1 (MQ=255)
      aaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTg                                                                                        <  1:357893/101‑1 (MQ=255)
      aaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTg                                                                                        <  1:8912150/101‑1 (MQ=255)
       aaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGc                                                                                       >  1:6112642/1‑101 (MQ=255)
        aTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCg                                                                                      <  1:8047708/101‑1 (MQ=255)
         tAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGa                                                                                     >  1:9329219/1‑101 (MQ=255)
          aaaCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGaa                                                                                    >  1:5641542/1‑101 (MQ=255)
           aaCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAAc                                                                                   >  1:4301720/1‑101 (MQ=255)
            aCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACa                                                                                  <  1:11545721/101‑1 (MQ=255)
            aCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACa                                                                                  <  1:10708394/101‑1 (MQ=255)
             ccTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACaa                                                                                 >  1:1300417/1‑101 (MQ=255)
             ccTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTGGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACaa                                                                                 <  1:9284107/101‑1 (MQ=255)
                ttgATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTc                                                                              <  1:3215839/99‑1 (MQ=255)
                tCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTc                                                                              <  1:11466406/101‑1 (MQ=255)
                 cGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTcc                                                                             <  1:12166818/101‑1 (MQ=255)
                  gATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTccc                                                                            >  1:4159185/1‑101 (MQ=255)
                  gATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTccc                                                                            >  1:1794690/1‑101 (MQ=255)
                   aTTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCt                                                                           >  1:9612285/1‑101 (MQ=255)
                    tttgtttgTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTg                                                                          <  1:11950816/101‑1 (MQ=255)
                    tttgtttgTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTg                                                                          <  1:2902762/101‑1 (MQ=255)
                    tttgtttgTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTg                                                                          <  1:13793288/101‑1 (MQ=255)
                     ttgtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGa                                                                         <  1:10180550/101‑1 (MQ=255)
                        tttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGatat                                                                      <  1:5774275/101‑1 (MQ=255)
                        tttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGatat                                                                      <  1:10128898/101‑1 (MQ=255)
                         ttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATg                                                                     >  1:11522207/1‑101 (MQ=255)
                         ttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATg                                                                     >  1:10519963/1‑101 (MQ=255)
                            tCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATgaga                                                                  >  1:6410629/1‑101 (MQ=255)
                            tCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATgaga                                                                  >  1:12463597/1‑101 (MQ=255)
                              aaGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATc                                                                >  1:6876493/1‑101 (MQ=255)
                              aaGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATc                                                                >  1:7331058/1‑101 (MQ=255)
                               aGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCa                                                               >  1:3569106/1‑101 (MQ=255)
                                 atatTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATg                                                             >  1:3049705/1‑101 (MQ=255)
                                  tatTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGt                                                            >  1:7825834/1‑101 (MQ=255)
                                    ttGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGttt                                                          >  1:9233064/1‑101 (MQ=255)
                                    ttGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGttt                                                          >  1:11281271/1‑101 (MQ=255)
                                     tGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTg                                                         <  1:832496/101‑1 (MQ=255)
                                       tCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTc                                                       >  1:5808090/1‑101 (MQ=255)
                                       tCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTc                                                       <  1:127505/101‑1 (MQ=255)
                                        ccATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAAGAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCa                                                      >  1:11058324/1‑101 (MQ=255)
                                           tCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCt                                                   >  1:2377629/1‑101 (MQ=255)
                                           tCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCt                                                   >  1:7169827/1‑101 (MQ=255)
                                           tCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCt                                                   <  1:12860504/101‑1 (MQ=255)
                                           tCTTGATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCt                                                   <  1:6897878/101‑1 (MQ=255)
                                             tttATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTgg                                                 >  1:7541028/1‑101 (MQ=255)
                                             tttATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTgg                                                 >  1:1949178/1‑101 (MQ=255)
                                              ttATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGa                                                >  1:12659053/1‑101 (MQ=255)
                                              ttATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGa                                                >  1:4855808/1‑101 (MQ=255)
                                               tatataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAg                                               <  1:7620106/101‑1 (MQ=255)
                                                atataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGc                                              >  1:2497549/1‑101 (MQ=255)
                                                 tataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGcc                                             >  1:1399319/1‑101 (MQ=255)
                                                 tataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGcc                                             <  1:8863906/101‑1 (MQ=255)
                                                  ataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCa                                            >  1:6551469/1‑101 (MQ=255)
                                                   taATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTGAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAt                                           >  1:13497982/1‑101 (MQ=255)
                                                   taATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAt                                           <  1:5241883/101‑1 (MQ=255)
                                                           gggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAgg                                   >  1:1607298/1‑101 (MQ=255)
                                                             gTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGt                                 <  1:7283819/101‑1 (MQ=255)
                                                              tAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGtt                                <  1:3132276/101‑1 (MQ=255)
                                                               aGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtc                               >  1:9504937/1‑101 (MQ=255)
                                                                 ggTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtcat                             <  1:11667064/101‑1 (MQ=255)
                                                                  gtgtTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtcatc                            >  1:11232124/1‑101 (MQ=255)
                                                                   tgtTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtcatca                           >  1:2073573/1‑101 (MQ=255)
                                                                    gtTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                          <  1:13579795/101‑1 (MQ=255)
                                                                    gtTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                          <  1:14159754/101‑1 (MQ=255)
                                                                     ttCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATg                         <  1:8359833/101‑1 (MQ=255)
                                                                        tttATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGt                      <  1:11794508/101‑1 (MQ=255)
                                                                        tttATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGt                      >  1:13351839/1‑101 (MQ=255)
                                                                         ttATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtc                     <  1:10722664/101‑1 (MQ=255)
                                                                         ttATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtc                     <  1:10436450/101‑1 (MQ=255)
                                                                          tATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtca                    >  1:6724794/1‑101 (MQ=255)
                                                                           aTGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcat                   <  1:3982044/101‑1 (MQ=255)
                                                                           aTGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcat                   >  1:5913898/1‑101 (MQ=255)
                                                                            tGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatc                  >  1:4402529/1‑101 (MQ=255)
                                                                             gTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatca                 >  1:465205/1‑101 (MQ=255)
                                                                               aaaaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAAc               >  1:7503776/1‑101 (MQ=255)
                                                                               aaaaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAAc               <  1:6336886/101‑1 (MQ=255)
                                                                                aaaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACGGGGTTCATCATGAGTCATCAACt              <  1:942532/101‑1 (MQ=255)
                                                                                aaaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACt              >  1:388233/1‑101 (MQ=255)
                                                                                 aaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACtt             >  1:6973249/1‑101 (MQ=40)
                                                                                 aaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACtt             <  1:8193945/101‑1 (MQ=40)
                                                                                  aaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTa            <  1:12781521/101‑1 (MQ=40)
                                                                                   aaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTAc           >  1:10907333/1‑101 (MQ=39)
                                                                                     aTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCt         <  1:7955973/101‑1 (MQ=37)
                                                                                       aGTGTCACCTAAGGAAGGTGCGAACACGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTc       <  1:9768278/101‑1 (MQ=21)
                                                                                       aGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTc       <  1:11860348/101‑1 (MQ=34)
                                                                                       aGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTc       <  1:13121538/101‑1 (MQ=34)
                                                                                        gtgtCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCg      <  1:9953085/101‑1 (MQ=33)
                                                                                          gtCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGcc    <  1:9139187/101‑1 (MQ=32)
                                                                                          gtCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGcc    <  1:8653578/101‑1 (MQ=32)
                                                                                          gtCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGcc    <  1:142763/101‑1 (MQ=32)
                                                                                          gtCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGcc    <  1:10372264/101‑1 (MQ=32)
                                                                                           tCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCg   <  1:5563463/101‑1 (MQ=31)
                                                                                           tCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCg   <  1:10064207/101‑1 (MQ=31)
                                                                                            cACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGa  >  1:4353135/1‑101 (MQ=11)
                                                                                                    |                                                                                            
TGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGA  >  NC_007779/3987086‑3987278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.