mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 2,865,248 | 0 | C→. | 1.4% | 22.8 ‑0.6 ‑0.1 | 712 | coding (843/876 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| * | NC_007779 | 4,477,098 | 1 | .→A | 1.6% | 17.2 ‑2.7 ‑1.5 | 308 | coding (116/135 nt) | pyrL | pyrBI operon leader peptide |
| * | NC_007779 | 149,550 | 1 | .→T | 1.3% | 11.4 0.0 ‑0.4 | 316 | coding (52/795 nt) | panB | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase |
| * | NC_007779 | 1,823,573 | 1 | .→A | 1.2% | 11.4 0.0 ‑0.0 | 320 | intergenic (‑240/+59) | chbB/osmE | PTS system N,N'‑diacetylchitobiose‑specific transporter subunit IIB/DNA‑binding transcriptional regulator |
| * | NC_007779 | 3,152,854 | 1 | .→A | 1.0% | 7.1 ‑1.4 ‑1.7 | 310 | coding (636/660 nt) | yghB | inner membrane protein |
| * | NC_007779 | 3,576,400 | 1 | .→A | 0.9% | 7.0 0.0 ‑0.4 | 331 | intergenic (‑166/+51) | yihL/bipA | DNA‑binding transcriptional regulator/GTP‑binding protein |
| * | NC_007779 | 3,627,544 | 1 | .→T | 1.0% | 6.9 0.0 ‑0.9 | 299 | intergenic (‑33/‑78) | pldB/rhtB | lysophospholipase L(2)/neutral amino‑acid efflux system |
| * | NC_007779 | 686,073 | 1 | .→T | 0.5% | 6.3 ‑0.5 ‑0.1 | 665 | coding (279/675 nt) | gltK | glutamate and aspartate transporter subunit |
| * | NC_007779 | 4,000,535 | 1 | .→A | 1.0% | 5.7 ‑2.1 ‑0.2 | 305 | intergenic (‑231/‑160) | uspA/yhiO | universal stress global response regulator/universal stress (ethanol tolerance) protein B |
| * | NC_007779 | 4,331,468 | 0 | A→. | 0.7% | 3.9 ‑1.2 ‑0.0 | 553 | intergenic (‑56/‑345) | phnA/yjdA | phosphonate metabolizing protein/hypothetical protein |
| * | NC_007779 | 2,222,881 | 1 | .→G | 0.7% | 2.9 ‑1.5 ‑0.4 | 292 | intergenic (‑66/+145) | yehZ/bglX | transporter subunit/beta‑D‑glucoside glucohydrolase, periplasmic |
| * | NC_007779 | 3,059,420 | 1 | .→T | 0.6% | 2.8 ‑1.4 ‑0.7 | 328 | intergenic (+118/‑86) | argP/yliK | DNA‑binding transcriptional activator/methylmalonyl‑CoA mutase |
| * | NC_007779 | 2,947,843 | 1 | .→A | 0.6% | 2.7 ‑1.4 ‑1.0 | 308 | intergenic (‑177/‑55) | amiC/argA | N‑acetylmuramoyl‑L‑alanine amidase/fused acetylglutamate kinase homolog (inactive) and amino acid N‑acetyltransferase |
| * | NC_007779 | 75,070 | 1 | .→G | 0.7% | 2.6 ‑1.7 ‑0.0 | 294 | coding (411/984 nt) | tbpA | thiamin transporter subunit |
| * | NC_007779 | 4,642,414 | 1 | .→A | 0.6% | 2.6 0.0 ‑0.3 | 309 | coding (1039/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB, regulator of the CreBC regulon |
| * | NC_007779 | 3,746,911 | 0 | G→A | 100.0% | 2.5 | 1 | intergenic (‑509/‑68) | mdtL/insH | multidrug efflux system protein/IS5 element protein |
| * | NC_007779 | 1,626,063 | 1 | .→T | 0.7% | 2.4 0.0 ‑0.6 | 300 | coding (149/393 nt) | ydeI | hypothetical protein |
| * | NC_007779 | 2,574,652 | 1 | .→T | 0.7% | 2.3 ‑0.7 ‑0.3 | 298 | intergenic (‑191/+102) | ypfE/maeB | carboxysome structural protein/bifunctional oxidoreductase/phosphotransacetylase |
| * | NC_007779 | 687,068 | 0 | A→C | 1.9% | 1.9 ‑22.1 0.0 | 602 | G8G (GGT→GGG) | gltJ | glutamate and aspartate transporter subunit |
| * | NC_007779 | 2,877,098 | 1 | .→C | 0.6% | 1.8 ‑1.6 ‑0.0 | 331 | intergenic (+824/+127) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/hypothetical protein |
| * | NC_007779 | 4,345,370 | 1 | .→T | 0.4% | 1.8 0.0 ‑0.9 | 562 | intergenic (‑168/+28) | adiA/melR | biodegradative arginine decarboxylase/DNA‑binding transcriptional dual regulator |
| * | NC_007779 | 1,636,246 | 0 | C→T | 100.0% | 1.6 | 1 | T118T (ACG→ACA) | tfaQ | tail fiber assembly protein |
| * | NC_007779 | 1,636,248 | 0 | T→C | 100.0% | 1.6 | 1 | T118A (ACG→GCG) | tfaQ | tail fiber assembly protein |
| * | NC_007779 | 1,636,252 | 0 | C→T | 100.0% | 1.6 | 1 | K116K (AAG→AAA) | tfaQ | tail fiber assembly protein |
| * | NC_007779 | 4,211,643 | 0 | A→G | 100.0% | ‑0.1 | 1 | intergenic (‑463/‑11) | yrdA/rrsE | hypothetical protein/16S ribosomal RNA |
| * | NC_007779 | 3,748,047 | 0 | T→C | 100.0% | ‑0.2 | 1 | intergenic (+88/+1024) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| * | NC_007779 | 1,471,792 | 0 | G→A | 100.0% | ‑0.5 | 1 | G241S (GGT→AGT) | insI | IS30 transposase |
| * | NC_007779 | 1,471,793 | 0 | G→A | 100.0% | ‑0.5 | 1 | G241D (GGT→GAT) | insI | IS30 transposase |
| * | NC_007779 | 1,471,794 | 0 | T→A | 100.0% | ‑0.5 | 1 | G241G (GGT→GGA) | insI | IS30 transposase |
| * | NC_007779 | 1,471,796 | 0 | C→A | 100.0% | ‑0.5 | 1 | T242K (ACA→AAA) | insI | IS30 transposase |
| * | NC_007779 | 1,471,803 | 0 | C→A | 100.0% | ‑0.5 | 1 | N244K (AAC→AAA) | insI | IS30 transposase |
| * | NC_007779 | 1,471,804 | 0 | T→A | 100.0% | ‑0.5 | 1 | S245T (TCT→ACT) | insI | IS30 transposase |
| * | NC_007779 | 1,471,805 | 0 | C→A | 100.0% | ‑0.5 | 1 | S245Y (TCT→TAT) | insI | IS30 transposase |
| * | NC_007779 | 1,471,806 | 0 | T→A | 100.0% | ‑0.5 | 1 | S245S (TCT→TCA) | insI | IS30 transposase |
| * | NC_007779 | 1,471,807 | 0 | C→A | 100.0% | ‑0.5 | 1 | H246N (CAT→AAT) | insI | IS30 transposase |
| * | NC_007779 | 1,471,809 | 0 | T→A | 100.0% | ‑0.5 | 1 | H246Q (CAT→CAA) | insI | IS30 transposase |
| * | NC_007779 | 1,471,811 | 0 | T→A | 100.0% | ‑0.5 | 1 | I247K (ATA→AAA) | insI | IS30 transposase |
| * | NC_007779 | 1,471,813 | 0 | G→A | 100.0% | ‑0.5 | 1 | A248T (GCC→ACC) | insI | IS30 transposase |
| * | NC_007779 | 1,471,814 | 0 | C→A | 100.0% | ‑0.5 | 1 | A248D (GCC→GAC) | insI | IS30 transposase |
| * | NC_007779 | 1,471,815 | 0 | C→A | 100.0% | ‑0.5 | 1 | A248A (GCC→GCA) | insI | IS30 transposase |
| * | NC_007779 | 1,471,817 | 0 | C→A | 100.0% | ‑0.5 | 1 | T249K (ACA→AAA) | insI | IS30 transposase |