BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	3987186 =	NA (NA)	238 (0.950)	125/178	NT	100%	intergenic (‑732/‑31)	slp/insH	outer membrane lipoprotein/IS5 transposase and trans‑activator
*	?	NC_007779	= 4009203	0 (0.000)	238 (0.950)	125/178	NT	100%	coding (1379/1623 nt)	yhiJ	hypothetical protein

Only 100 of 250 total aligned reads displayed.

TGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGA  >  NC_007779/3987086‑3987278

tGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaa‑gg                                                                                              >  1:5099273/1‑101 (MQ=255)

tGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaa‑gg                                                                                              >  1:5197818/1‑101 (MQ=255)

tGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaa‑gg                                                                                              >  1:11394543/1‑101 (MQ=255)

  ttGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaa‑ggaa                                                                                            <  1:3379846/101‑1 (MQ=255)

     aaaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGt                                                                                         >  1:3798878/1‑101 (MQ=255)

         tAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGa                                                                                     <  1:10800759/101‑1 (MQ=255)

         tAAACCTTCGATTTGCTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGa                                                                                     <  1:9540974/101‑1 (MQ=255)

          aaaCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGaa                                                                                    <  1:3289150/101‑1 (MQ=255)

           aaCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAAc                                                                                   >  1:5336414/1‑101 (MQ=255)

           aaCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAAc                                                                                   <  1:7655557/101‑1 (MQ=255)

           aaCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAAc                                                                                   >  1:7873201/1‑101 (MQ=255)

            aCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACa                                                                                  <  1:9616426/101‑1 (MQ=255)

             ccTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACaa                                                                                 >  1:9035280/1‑101 (MQ=255)

              cTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAg                                                                                <  1:8907518/101‑1 (MQ=255)

              cTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAg                                                                                >  1:5753275/1‑101 (MQ=255)

                  gATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTccc                                                                            >  1:2260826/1‑101 (MQ=255)

                  gATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTccc                                                                            >  1:8801994/1‑101 (MQ=255)

                  gATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTccc                                                                            >  1:7436964/1‑101 (MQ=255)

                  gATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTccc                                                                            >  1:9104336/1‑101 (MQ=255)

                   gtttgtttgGCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCt                                                                           <  1:1324807/100‑1 (MQ=255)

                   aTTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCt                                                                           <  1:10789778/101‑1 (MQ=255)

                   aTTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCt                                                                           <  1:8634988/101‑1 (MQ=255)

                    tttgtttgTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTg                                                                          >  1:5634446/1‑101 (MQ=255)

                    tttgtttgTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTg                                                                          >  1:4858859/1‑101 (MQ=255)

                     ttgtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGa                                                                         <  1:9387033/101‑1 (MQ=255)

                      tgtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTGACCTAA‑GGAAGGTGCGAACAAGTCCCTGat                                                                        <  1:6914697/101‑1 (MQ=255)

                      tgtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGat                                                                        >  1:8592996/1‑101 (MQ=255)

                      tgtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGat                                                                        <  1:3829933/101‑1 (MQ=255)

                      tgtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGat                                                                        >  1:1206478/1‑101 (MQ=255)

                       gtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGata                                                                       <  1:4154925/101‑1 (MQ=255)

                         ttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATg                                                                     >  1:6231507/1‑101 (MQ=255)

                          tgtCAAGATATTGTCCATCTTTATATAATTTAGGGGTAGGGGGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATga                                                                    >  1:7236584/1‑101 (MQ=255)

                           gtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATgag                                                                   >  1:10264447/1‑101 (MQ=255)

                            tCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATgaga                                                                  <  1:1930802/101‑1 (MQ=255)

                            tCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATgaga                                                                  >  1:6738550/1‑101 (MQ=255)

                            tCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATgaga                                                                  <  1:5835180/101‑1 (MQ=255)

                             cAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGTGAt                                                                 <  1:12393575/101‑1 (MQ=255)

                              aaGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATc                                                                >  1:1354141/1‑101 (MQ=255)

                              aaGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATc                                                                <  1:12669630/101‑1 (MQ=255)

                                gATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCAt                                                              >  1:5419030/1‑101 (MQ=255)

                                gATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCAt                                                              <  1:286422/101‑1 (MQ=255)

                                gATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCAt                                                              <  1:10028164/101‑1 (MQ=255)

                                     tGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTg                                                         >  1:1425394/1‑101 (MQ=255)

                                     tGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTg                                                         >  1:7932513/1‑101 (MQ=255)

                                      gTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGt                                                        >  1:695040/1‑101 (MQ=255)

                                      gTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGt                                                        <  1:2159209/101‑1 (MQ=255)

                                        ccATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCa                                                      <  1:824908/101‑1 (MQ=255)

                                        ccATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCa                                                      <  1:11946489/101‑1 (MQ=255)

                                        ccATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCa                                                      >  1:7272885/1‑101 (MQ=255)

                                        ccATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTGTGTCa                                                      >  1:11161069/1‑101 (MQ=255)

                                         cATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCAt                                                     >  1:12392535/1‑101 (MQ=255)

                                          aTCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATc                                                    <  1:12387873/101‑1 (MQ=255)

                                           tCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCt                                                   <  1:8079252/101‑1 (MQ=255)

                                             tttATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTgg                                                 >  1:3957323/1‑101 (MQ=255)

                                               tatataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTGA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAg                                               <  1:760495/101‑1 (MQ=255)

                                               tatataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAg                                               <  1:11523313/101‑1 (MQ=255)

                                                 tataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGcc                                             <  1:7036409/101‑1 (MQ=255)

                                                   taATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAt                                           >  1:11606705/1‑101 (MQ=255)

                                                    aaTTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATa                                          >  1:10291471/1‑101 (MQ=255)

                                                    aaTTTGGGGGTAGGGCGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATa                                          <  1:11735116/101‑1 (MQ=255)

                                                     aTTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGGGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAg                                         <  1:1807950/101‑1 (MQ=255)

                                                      tttGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGa                                        <  1:1490177/101‑1 (MQ=255)

                                                       ttGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGaa                                       <  1:11465528/101‑1 (MQ=255)

                                                       ttGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGaa                                       <  1:3079385/101‑1 (MQ=255)

                                                        tGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAc                                      <  1:3679453/101‑1 (MQ=255)

                                                        tGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAc                                      >  1:2709634/1‑101 (MQ=255)

                                                         gggggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACa                                     <  1:10538327/101‑1 (MQ=255)

                                                         gggggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACa                                     >  1:9816897/1‑101 (MQ=255)

                                                           gggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAgg                                   <  1:1696079/101‑1 (MQ=255)

                                                           gggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAgg                                   <  1:814214/101‑1 (MQ=255)

                                                           gggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAgg                                   <  1:1262395/101‑1 (MQ=255)

                                                              gaGGGTGTTCTTTATGTAAAAAAATAGTGGCCCCTAAGGGAGGGTGC‑AAAAAGGTCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGtt                                <  1:7162345/100‑1 (MQ=18)

                                                               aGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtc                               >  1:4735937/1‑101 (MQ=255)

                                                                gggTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtca                              >  1:9708929/1‑101 (MQ=255)

                                                                    gtTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAAGAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                          >  1:3604276/1‑101 (MQ=255)

                                                                      tCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGa                        >  1:201377/1‑101 (MQ=255)

                                                                       cTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAg                       >  1:3037863/1‑101 (MQ=255)

                                                                       cTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAg                       <  1:12273907/101‑1 (MQ=255)

                                                                       cTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAg                       <  1:6097912/101‑1 (MQ=255)

                                                                        tttATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGt                      <  1:2020958/101‑1 (MQ=255)

                                                                        tttATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGt                      <  1:12226888/101‑1 (MQ=255)

                                                                          tATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtca                    >  1:4473938/1‑101 (MQ=255)

                                                                          tATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtca                    >  1:6604479/1‑101 (MQ=255)

                                                                           aTGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcat                   >  1:10195875/1‑101 (MQ=255)

                                                                           aTGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcat                   <  1:9361082/101‑1 (MQ=255)

                                                                             gTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatca                 >  1:1878278/1‑101 (MQ=255)

                                                                             gTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatca                 >  1:4490348/1‑101 (MQ=255)

                                                                                  aaaaTAGTGTCACGTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTa            <  1:10597563/101‑1 (MQ=255)

                                                                                   aaaTAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTAc           >  1:11085677/1‑101 (MQ=39)

                                                                                     aTAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCt         >  1:4269118/1‑101 (MQ=37)

                                                                                     aTAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCt         <  1:7969365/101‑1 (MQ=37)

                                                                                       aGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTc       <  1:1740275/101‑1 (MQ=34)

                                                                                        gtgtCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCg      >  1:6515072/1‑101 (MQ=33)

                                                                                         tgtCACCTAA‑GGAAGATGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGc     <  1:4066889/101‑1 (MQ=17)

                                                                                          gtCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGcc    <  1:6166605/101‑1 (MQ=32)

                                                                                          gtCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGcc    >  1:2537582/1‑101 (MQ=32)

                                                                                            cACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGa  >  1:8484815/1‑101 (MQ=11)

                                                                                            cACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGa  >  1:8428295/1‑101 (MQ=11)

                                                                                            cACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGa  >  1:7063738/1‑101 (MQ=11)

                                                                                            cACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAAAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGa  >  1:4651604/1‑101 (MQ=11)

TGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAA‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGA  >  NC_007779/3987086‑3987278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.