mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 686,495 | 0 | A→C | 13.0% | 225.4 ‑324.5 0.0 | 1384 | G199G (GGT→GGG) | gltJ | glutamate and aspartate transporter subunit |
| * | NC_007779 | 687,133 | 0 | A→C | 4.9% | 61.8 ‑146.8 0.0 | 1693 | intergenic (‑42/+128) | gltJ/gltI | glutamate and aspartate transporter subunit/glutamate and aspartate transporter subunit |
| * | NC_007779 | 688,155 | 0 | T→G | 4.0% | 18.9 ‑172.9 0.0 | 1876 | K5N (AAA→AAC) | gltI | glutamate and aspartate transporter subunit |
| * | NC_007779 | 2,793,036 | 1 | .→G | 1.6% | 15.8 ‑2.7 ‑0.0 | 312 | coding (128/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| * | NC_007779 | 3,627,544 | 1 | .→T | 1.2% | 11.9 ‑1.0 ‑1.0 | 332 | intergenic (‑33/‑78) | pldB/rhtB | lysophospholipase L(2)/neutral amino‑acid efflux system |
| * | NC_007779 | 687,068 | 0 | A→C | 1.3% | 8.2 ‑64.9 0.0 | 1916 | G8G (GGT→GGG) | gltJ | glutamate and aspartate transporter subunit |
| * | NC_007779 | 149,550 | 1 | .→T | 0.9% | 7.3 0.0 ‑0.9 | 316 | coding (52/795 nt) | panB | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase |
| * | NC_007779 | 3,576,400 | 1 | .→A | 1.0% | 7.0 0.0 ‑0.0 | 309 | intergenic (‑166/+51) | yihL/bipA | DNA‑binding transcriptional regulator/GTP‑binding protein |
| * | NC_007779 | 1,122,985 | 1 | .→G | 0.9% | 6.9 ‑1.4 ‑0.5 | 318 | coding (80/246 nt) | dinI | DNA damage‑inducible protein I |
| * | NC_007779 | 825,471 | 1 | .→G | 1.0% | 6.7 ‑1.4 ‑0.0 | 309 | coding (1060/1107 nt) | ybhR | transporter subunit |
| * | NC_007779 | 4,583,199 | 1 | .→T | 0.6% | 2.9 ‑0.7 ‑0.1 | 323 | coding (819/1380 nt) | mcrB | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrB |
| * | NC_007779 | 2,941,549 | 1 | .→T | 0.6% | 2.8 ‑1.6 ‑1.1 | 334 | intergenic (‑326/+25) | gcvA/ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein |
| * | NC_007779 | 681,973 | 0 | A→. | 0.2% | 2.7 ‑1.1 ‑0.4 | 1804 | coding (1340/1452 nt) | djlC | Hsc56 co‑chaperone of HscC |
| * | NC_007779 | 4,375,240 | 1 | .→T | 0.6% | 2.7 0.0 ‑0.1 | 325 | intergenic (‑148/‑128) | yjeH/groS | transporter/Cpn10 chaperonin GroES, small subunit of GroESL |
| * | NC_007779 | 1,105,181 | 1 | .→T | 0.7% | 2.5 ‑0.7 ‑0.1 | 306 | intergenic (+38/‑21) | csgA/csgC | cryptic curlin major subunit/curli production protein |
| * | NC_007779 | 2,222,881 | 1 | .→G | 0.7% | 2.4 ‑1.8 ‑0.0 | 304 | intergenic (‑66/+145) | yehZ/bglX | transporter subunit/beta‑D‑glucoside glucohydrolase, periplasmic |
| * | NC_007779 | 3,653,996 | 1 | .→G | 0.6% | 2.4 ‑0.6 ‑0.6 | 323 | noncoding (80/87 nt) | leuT | tRNA‑Leu |
| * | NC_007779 | 3,446,331 | 1 | .→A | 0.6% | 2.3 ‑1.4 ‑0.0 | 309 | intergenic (+385/+25) | thiH/htrC | thiamin biosynthesis ThiGH complex subunit/heat shock protein |
| * | NC_007779 | 119,380 | 1 | .→G | 0.6% | 2.1 ‑0.7 ‑0.0 | 312 | coding (100/855 nt) | ampE | inner membrane protein |
| * | NC_007779 | 1,907,281 | 0 | C→A | 0.7% | 1.7 ‑0.5 ‑0.0 | 584 | intergenic (+308/‑121) | yobD/yebN | inner membrane protein/inner membrane protein |
| * | NC_007779 | 655,401 | 0 | A→C | 100.0% | 0.7 | 1 | intergenic (+140/‑1578) | insH/crcA | IS5 element protein/palmitoyl transferase for Lipid A |
| * | NC_007779 | 4,211,657 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (4/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,211,658 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (5/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,211,659 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (6/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,211,662 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (9/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,629 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (976/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,632 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (979/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,633 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (980/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,634 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (981/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,635 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (982/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,637 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (984/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,638 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (985/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,639 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (986/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,640 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (987/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,641 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (988/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,642 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (989/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,643 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (990/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,644 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (991/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,645 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (992/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,646 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (993/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,648 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (995/1542 nt) | rrsE | 16S ribosomal RNA |