New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 = 3748105NA (NA)244 (0.970) 134/180 NT 100% intergenic (+146/+966) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
?NC_007779 3748643 = 0 (0.000)intergenic (+684/+428) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent

TTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAGAA  >  NC_007779/3748010‑3748113
                                                                                               |        
ttCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTaga     >  1:11789884/1‑101 (MQ=11)
   aatgCATTTACGAGGGAATAACTCGGCTCAGACATGCAGGATTGTAATGACTGTGTCTGCCGAGAAGAATTTCCCCGCTTATTTGAACCTTCATTAGTGaa  >  1:8404938/4‑101 (MQ=2)
                                                                                               |        
TTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGAGAA  >  NC_007779/3748010‑3748113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.