mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 687,133 | 0 | A→C | 6.3% | 150.6 ‑284.9 0.0 | 2431 | intergenic (‑42/+128) | gltJ/gltI | glutamate and aspartate transporter subunit/glutamate and aspartate transporter subunit |
| * | NC_007779 | 688,155 | 0 | T→G | 5.3% | 64.9 ‑299.6 0.0 | 2828 | K5N (AAA→AAC) | gltI | glutamate and aspartate transporter subunit |
| * | NC_007779 | 3,576,400 | 1 | .→A | 2.0% | 22.1 ‑2.3 ‑0.3 | 301 | intergenic (‑166/+51) | yihL/bipA | DNA‑binding transcriptional regulator/GTP‑binding protein |
| * | NC_007779 | 685,600 | 0 | T→. | 0.3% | 14.2 ‑1.7 ‑0.3 | 2791 | coding (78/726 nt) | gltL | glutamate and aspartate transporter subunit |
| * | NC_007779 | 687,068 | 0 | A→C | 1.1% | 14.0 ‑86.3 0.0 | 2826 | G8G (GGT→GGG) | gltJ | glutamate and aspartate transporter subunit |
| * | NC_007779 | 3,293,230 | 1 | .→A | 1.5% | 12.3 0.0 ‑0.0 | 272 | intergenic (‑40/‑25) | yraL/yraM | methyltransferase/hypothetical protein |
| * | NC_007779 | 687,748 | 0 | T→. | 0.2% | 9.0 ‑0.3 ‑0.6 | 2815 | coding (422/909 nt) | gltI | glutamate and aspartate transporter subunit |
| * | NC_007779 | 687,059 | 1 | .→A | 0.1% | 4.3 0.0 ‑0.1 | 2589 | coding (33/741 nt) | gltJ | glutamate and aspartate transporter subunit |
| * | NC_007779 | 687,804 | 0 | T→. | 0.2% | 3.9 0.0 ‑0.7 | 2837 | coding (366/909 nt) | gltI | glutamate and aspartate transporter subunit |
| * | NC_007779 | 3,734,364 | 1 | .→A | 0.7% | 2.8 0.0 ‑0.2 | 278 | coding (1385/1413 nt) | bglB | cryptic phospho‑beta‑glucosidase B |
| * | NC_007779 | 4,429,582 | 1 | .→A | 0.7% | 2.8 0.0 ‑0.0 | 268 | intergenic (‑111/‑216) | yjfY/rpsF | hypothetical protein/30S ribosomal protein S6 |
| * | NC_007779 | 1,938,748 | 1 | .→A | 0.7% | 2.6 0.0 ‑0.2 | 284 | coding (383/870 nt) | yebK | DNA‑binding transcriptional regulator |
| * | NC_007779 | 3,752,097 | 1 | .→T | 0.7% | 2.6 ‑0.7 ‑0.0 | 279 | intergenic (‑117/+126) | tnaC/trmE | tryptophanase leader peptide/GTPase |
| * | NC_007779 | 3,976,303 | 1 | .→A | 0.7% | 2.4 0.0 ‑0.1 | 271 | coding (507/729 nt) | gadW | DNA‑binding transcriptional activator |
| * | NC_007779 | 4,523,008 | 0 | T→. | 0.9% | 2.4 ‑0.6 ‑0.7 | 330 | intergenic (‑93/‑199) | fecI/insA | RNA polymerase, sigma 19 factor/IS1 repressor protein InsA |
| * | NC_007779 | 3,645,665 | 1 | .→A | 0.7% | 2.3 0.0 ‑0.0 | 285 | intergenic (‑137/‑250) | cyaA/hemC | adenylate cyclase/hydroxymethylbilane synthase |
| * | NC_007779 | 4,484,644 | 1 | .→T | 0.7% | 2.3 0.0 ‑0.3 | 276 | coding (235/1197 nt) | yjgN | inner membrane protein |
| * | NC_007779 | 1,097,765 | 0 | A→. | 0.6% | 1.8 ‑0.5 ‑0.2 | 501 | intergenic (+514/+41) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 686,074 | 0 | T→. | 0.1% | 1.4 ‑0.5 ‑1.3 | 3292 | coding (278/675 nt) | gltK | glutamate and aspartate transporter subunit |
| * | NC_007779 | 655,353 | 0 | G→A | 100.0% | 1.3 | 1 | intergenic (+92/‑1626) | insH/crcA | IS5 element protein/palmitoyl transferase for Lipid A |
| * | NC_007779 | 655,358 | 0 | G→A | 100.0% | 0.9 | 1 | intergenic (+97/‑1621) | insH/crcA | IS5 element protein/palmitoyl transferase for Lipid A |
| * | NC_007779 | 655,362 | 0 | T→G | 100.0% | 0.7 | 1 | intergenic (+101/‑1617) | insH/crcA | IS5 element protein/palmitoyl transferase for Lipid A |
| * | NC_007779 | 655,370 | 0 | T→C | 100.0% | 0.5 | 1 | intergenic (+109/‑1609) | insH/crcA | IS5 element protein/palmitoyl transferase for Lipid A |
| * | NC_007779 | 655,386 | 0 | T→C | 100.0% | 0.5 | 1 | intergenic (+125/‑1593) | insH/crcA | IS5 element protein/palmitoyl transferase for Lipid A |
| * | NC_007779 | 686,495 | 0 | A→C | 12.5% | 0.0 ‑464.5 0.0 | 2147 | G199G (GGT→GGG) | gltJ | glutamate and aspartate transporter subunit |
| * | NC_007779 | 1,050,595 | 0 | C→T | 100.0% | ‑0.1 | 1 | Y49Y (TAC→TAT) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 1,050,643 | 0 | G→T | 100.0% | ‑0.1 | 1 | R65S (AGG→AGT) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 4,512,277 | 0 | T→C | 100.0% | ‑0.2 | 1 | T341A (ACA→GCA) | insI | IS30 transposase |
| * | NC_007779 | 1,572,871 | 0 | G→A | 100.0% | ‑0.5 | 1 | Q297* (CAG→TAG) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,872 | 0 | C→A | 100.0% | ‑0.5 | 1 | P296P (CCG→CCT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,873 | 0 | G→A | 100.0% | ‑0.5 | 1 | P296L (CCG→CTG) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,874 | 0 | G→A | 100.0% | ‑0.5 | 1 | P296S (CCG→TCG) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,875 | 0 | C→A | 100.0% | ‑0.5 | 1 | L295L (CTG→CTT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,877 | 0 | G→A | 100.0% | ‑0.5 | 1 | L295L (CTG→TTG) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,878 | 0 | C→A | 100.0% | ‑0.5 | 1 | A294A (GCG→GCT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,879 | 0 | G→A | 100.0% | ‑0.5 | 1 | A294V (GCG→GTG) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,880 | 0 | C→A | 100.0% | ‑0.5 | 1 | A294S (GCG→TCG) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,881 | 0 | T→A | 100.0% | ‑0.5 | 1 | E293D (GAA→GAT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,882 | 0 | T→A | 100.0% | ‑0.5 | 1 | E293V (GAA→GTA) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,883 | 0 | C→A | 100.0% | ‑0.5 | 1 | E293* (GAA→TAA) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,884 | 0 | T→A | 100.0% | ‑0.5 | 1 | E292D (GAA→GAT) | gadB | glutamate decarboxylase B, PLP‑dependent |