BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 2412224	NA (NA)	5 (0.020)	5/178	NT	1.6%	intergenic (‑54/‑783)	insA/yfbQ	IS1 element protein/aminotransferase
*	?	NC_007779	= 2941546	315 (1.140)	5 (0.020)	5/178	NT	1.6%	intergenic (‑323/+28)	gcvA/ygdI	DNA‑binding transcriptional dual regulator/hypothetical protein

Only 100 of 373 total aligned reads displayed.

GGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTA  >  NC_007779/2941446‑2941646

ggTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGG                                                                                                       <  1:7833466‑M2/101‑1 (MQ=255)

 gTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGt                                                                                                      >  1:13896710/1‑101 (MQ=255)

  tCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTg                                                                                                     <  1:1229210/101‑1 (MQ=255)

   CTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGc                                                                                                    >  1:6146766‑M2/1‑101 (MQ=255)

    tGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑t                                                                                                  >  1:4076795/1‑101 (MQ=255)

      cGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑ttt                                                                                                <  1:12107205/101‑1 (MQ=255)

       gATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑tttt                                                                                               >  1:9196849/1‑101 (MQ=255)

       gATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑tttt                                                                                               >  1:4230948/1‑101 (MQ=255)

       gATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑tttt                                                                                               >  1:11195393/1‑101 (MQ=255)

        aTTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTATTGTAGCACCGCCTAATTGCGGTGC‑ttttt                                                                                              >  1:3290985/1‑101 (MQ=255)

        aTTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑ttttt                                                                                              >  1:13975512/1‑101 (MQ=255)

        aTTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑ttttt                                                                                              >  1:2837916/1‑101 (MQ=255)

        aTTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑ttttt                                                                                              >  1:5421431/1‑101 (MQ=255)

         ttCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑tttttt                                                                                             >  1:11522866/1‑101 (MQ=255)

         ttCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑tttttt                                                                                             >  1:5704058/1‑101 (MQ=255)

          tCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑ttttttt                                                                                            >  1:13497905/1‑101 (MQ=255)

              aCCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGgtgatgctgccaac                                                                                         >  1:13287131‑M2/1‑87 (MQ=255)

              aCCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑tttttttacct                                                                                        >  1:3491144/1‑97 (MQ=255)

               ccATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCt                                                                                       >  1:2680838/1‑101 (MQ=255)

               ccATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCt                                                                                       >  1:6872248/1‑101 (MQ=255)

                 aTGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTg                                                                                     >  1:9259257/1‑101 (MQ=255)

                   ggTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCg                                                                                   <  1:7650059/101‑1 (MQ=255)

                      aGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATc                                                                                <  1:8568195/101‑1 (MQ=255)

                      aGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATc                                                                                <  1:12972065/101‑1 (MQ=255)

                         aaaGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATcgcg                                                                             >  1:10652035/1‑101 (MQ=255)

                         aaaGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATcgcg                                                                             >  1:7234131/1‑101 (MQ=255)

                           aGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGaa                                                                           >  1:6296798/1‑101 (MQ=255)

                            gCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAAt                                                                          >  1:12331197/1‑101 (MQ=255)

                              tACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTa                                                                        >  1:3393918/1‑101 (MQ=255)

                                ccTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACt                                                                      >  1:3372219/1‑101 (MQ=255)

                                 cTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCAGCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTg                                                                     >  1:7538616/1‑101 (MQ=255)

                                  ttttttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTTCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGa                                                                    >  1:8969365/1‑101 (MQ=255)

                                  ttttttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGa                                                                    <  1:385281/101‑1 (MQ=255)

                                    ttttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATc                                                                  >  1:4760682/1‑101 (MQ=255)

                                     tttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATcc                                                                 >  1:970744/1‑101 (MQ=255)

                                      ttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCa                                                                >  1:5767185/1‑101 (MQ=255)

                                       tCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAg                                                               <  1:3555503/101‑1 (MQ=255)

                                        cACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGt                                                              <  1:6563455/101‑1 (MQ=255)

                                        cACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGt                                                              <  1:5108166/101‑1 (MQ=255)

                                        atcgggcattatctgaacataaaacactatcaataagttggagtcattacCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGt                                                              >  1:12457388‑M2/51‑101 (MQ=255)

                                         aCTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGtt                                                             >  1:816721/1‑101 (MQ=255)

                                          cTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTc                                                            >  1:5050686/1‑101 (MQ=255)

                                           ttCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCg                                                           >  1:6625279/1‑101 (MQ=255)

                                            tCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGa                                                          <  1:551634/101‑1 (MQ=255)

                                              cTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGAcc                                                        <  1:770361/101‑1 (MQ=255)

                                                gTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCAt                                                      >  1:2040981/1‑101 (MQ=255)

                                                 tACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCAtc                                                     >  1:5828647/1‑101 (MQ=255)

                                                  aCATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCAtct                                                    >  1:12524443/1‑101 (MQ=255)

                                                  aCATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑ATTTTTTTACCTTGCAATCGCGAATTACTGATCCAGTTCGACCAtct                                                    >  1:10003132/1‑101 (MQ=255)

                                                   taTTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCAtctc                                                   <  1:670335/100‑1 (MQ=255)

                                                   cATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCAtctc                                                   <  1:8463280/101‑1 (MQ=255)

                                                    aTTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATctct                                                  >  1:13041352/1‑101 (MQ=255)

                                                    aTTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATctct                                                  >  1:2935690/1‑101 (MQ=255)

                                                     tttACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTTGGATCGCGAATTACTTATCCAGTTCGACCGtctcct                                                 >  1:10930249/1‑99 (MQ=255)

                                                       tACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTc                                               <  1:8278242/101‑1 (MQ=255)

                                                           ctgtctgtCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGt                                           <  1:5194125/101‑1 (MQ=255)

                                                            tgtctgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTc                                          >  1:6190420/1‑101 (MQ=255)

                                                             gtctgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCa                                         <  1:11129936/101‑1 (MQ=255)

                                                             gtctgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCa                                         >  1:13760457/1‑101 (MQ=255)

                                                               ctgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGt                                       >  1:1731551/1‑101 (MQ=255)

                                                               ctgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGt                                       >  1:10031082/1‑101 (MQ=255)

                                                                tgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTa                                      <  1:7894786/101‑1 (MQ=255)

                                                                tgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTa                                      >  1:1877233/1‑101 (MQ=255)

                                                                tgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTa                                      <  1:10812578/101‑1 (MQ=255)

                                                                  tcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACg                                    <  1:48946/101‑1 (MQ=255)

                                                                   ccATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACg                                    >  1:232641/1‑101 (MQ=255)

                                                                      tAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTg                                >  1:7024136/1‑101 (MQ=255)

                                                                         tGATTAATGTAGCACCACCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATc                             >  1:3150227/1‑101 (MQ=255)

                                                                          gATTAATGTAGCCCCGCCTAATTGCGGTGC‑TTTTTTTTACCTTACGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATct                            <  1:8814474/101‑1 (MQ=255)

                                                                           aTTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATctg                           >  1:8089070/1‑101 (MQ=255)

                                                                           aTTAATGTAGCACCGCCTAATTACGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATctg                           <  1:11655935/101‑1 (MQ=255)

                                                                              aaTGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATctgctg                        <  1:2123099/101‑1 (MQ=255)

                                                                               aTGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCtgt                       <  1:10372196/101‑1 (MQ=255)

                                                                                 gTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCtgttt                     <  1:2418505/101‑1 (MQ=255)

                                                                                 gTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCtgttt                     <  1:13703202/101‑1 (MQ=255)

                                                                                 gTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCtgttt                     <  1:126151/101‑1 (MQ=255)

                                                                                 gTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCAGCtgttt                     <  1:3918243/101‑1 (MQ=255)

                                                                                     gcccGCCTAATTGCGGTGC‑TTTTTTTTTCCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTttgttg                 <  1:8660512/99‑1 (MQ=255)

                                                                                     cACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTttgttg                 <  1:3682084/101‑1 (MQ=255)

                                                                                     cACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTttgttg                 <  1:7335883/101‑1 (MQ=255)

                                                                                      aCCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGc                >  1:1200472/1‑101 (MQ=255)

                                                                                        cGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCa              >  1:10326927/1‑101 (MQ=255)

                                                                                         gCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCAt             <  1:4332009/101‑1 (MQ=255)

                                                                                             aaTTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACAGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGc         <  1:1049274/101‑1 (MQ=255)

                                                                                              aTTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCg        >  1:11274485/1‑101 (MQ=255)

                                                                                              aTTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCg        >  1:10167275/1‑101 (MQ=255)

                                                                                              aTTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCg        >  1:12870463/1‑101 (MQ=255)

                                                                                               ttGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGt       >  1:12731838/1‑101 (MQ=255)

                                                                                                tGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTc      >  1:13574072/1‑101 (MQ=255)

                                                                                                 gCGGTGC‑TTTTTTTTACCTTGCGATCGCGATTTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCt     >  1:11804055/1‑101 (MQ=255)

                                                                                                 gCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCt     <  1:7975235/101‑1 (MQ=255)

                                                                                                 gCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCt     <  1:13175447/101‑1 (MQ=255)

                                                                                                  cGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCtt    <  1:1140049/101‑1 (MQ=255)

                                                                                                    ggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacg   <  1:3227111‑M2/101‑101 (MQ=255)

                                                                                                    ggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacg   <  1:6391514‑M2/101‑101 (MQ=255)

                                                                                                    ggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacg   <  1:599267‑M2/101‑101 (MQ=255)

                                                                                                    ggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacg   >  1:9434947‑M2/1‑1 (MQ=255)

                                                                                                    ggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacg   >  1:1516342‑M2/1‑1 (MQ=255)

                                                                                                    gTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTta  <  1:9057676/101‑1 (MQ=255)

                                                                                                    gTGC‑TTTTTTTTACCTTGCCATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTta  <  1:4536170/101‑1 (MQ=255)

GGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTA  >  NC_007779/2941446‑2941646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.