BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 3265777	0 (0.000)	297 (1.080)	133/180	NT	100%	coding (107/990 nt)	tdcB	catabolic threonine dehydratase, PLP‑dependent
*	?	NC_007779	3365411 =	NA (NA)	297 (1.080)	133/180	NT	100%	intergenic (+368/+146)	yhcD/insH	outer membrane protein/IS5 transposase and trans‑activator

Only 100 of 304 total aligned reads displayed.

TGATCGCCAGCGATGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA  >  NC_007779/3365311‑3365505

tGATCGCCAGCGATGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAgg                                                                                                <  1:3323/101‑1 (MQ=255)

  aTCGCCAGCGATGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGa                                                                                              <  1:8025013/101‑1 (MQ=255)

  aTCGCCAGCGATGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGa                                                                                              <  1:5791677/101‑1 (MQ=255)

    cGCCAGCGATGCATTTTCAGGTAGTAACAATCTCGACCTTGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCCCAGGAACAGCATCAATTAGGGAAg                                                                                            <  1:2822620/101‑1 (MQ=255)

    cGCCAGCGATGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAg                                                                                            >  1:7749862/1‑101 (MQ=255)

    cGCCAGCGATGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAg                                                                                            >  1:2612105/1‑101 (MQ=255)

      ccAGCGATGCATTTTCCGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGt                                                                                          >  1:13077670/1‑101 (MQ=255)

       cAGCGATGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTg                                                                                         <  1:12669814/101‑1 (MQ=255)

        aGCGATGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGc                                                                                        <  1:9772662/101‑1 (MQ=255)

          cGATGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGa                                                                                      <  1:12430361/101‑1 (MQ=255)

           gATGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGaa                                                                                     >  1:384819/1‑101 (MQ=255)

           gATGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGaa                                                                                     >  1:11492697/1‑101 (MQ=255)

            aTGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCCCAGGAACAGCATCAATTAGGGAAGGGGCGaaa                                                                                    >  1:3984933/1‑100 (MQ=255)

            aTGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAAt                                                                                    >  1:5202193/1‑101 (MQ=255)

            aTGCATTTTCAGGTAGTAACAATCTCGACCTAGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAAt                                                                                    <  1:10000202/101‑1 (MQ=255)

             tGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATa                                                                                   >  1:1873040/1‑101 (MQ=255)

              gCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATaa                                                                                  <  1:3141845/101‑1 (MQ=255)

                aTTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGc                                                                                >  1:6379874/1‑101 (MQ=255)

                 ttttCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCg                                                                               <  1:169390/101‑1 (MQ=255)

                 ttttCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCg                                                                               <  1:13130466/101‑1 (MQ=255)

                  tttCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCgg                                                                              >  1:2466396/1‑101 (MQ=255)

                      aGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGaa                                                                          <  1:1793685/101‑1 (MQ=255)

                          agtaACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAAttc                                                                      <  1:10701640/101‑1 (MQ=255)

                              aCAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATtcttct                                                                  <  1:13907291/101‑1 (MQ=255)

                              aCAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATtcttct                                                                  <  1:7182135/101‑1 (MQ=255)

                               cAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCACTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTtctc                                                                 >  1:6099968/1‑101 (MQ=255)

                               cAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTtctc                                                                 <  1:972657/101‑1 (MQ=255)

                                  tctcGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGc                                                              <  1:13490852/101‑1 (MQ=255)

                                  tctcGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGc                                                              >  1:6571682/1‑101 (MQ=255)

                                  tctcGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGc                                                              <  1:9313947/101‑1 (MQ=255)

                                   ctcGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                             >  1:13852849/1‑101 (MQ=255)

                                    tcGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                            <  1:5849266/101‑1 (MQ=255)

                                      gACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                                                          >  1:6051685/1‑101 (MQ=255)

                                      gACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                                                          >  1:12227380/1‑101 (MQ=255)

                                         cttgCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                       >  1:10798074/4‑101 (MQ=255)

                                         cTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                       <  1:11986573/101‑1 (MQ=255)

                                          tGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg                                                      >  1:473628/1‑101 (MQ=255)

                                          tGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg                                                      >  1:7244466/1‑101 (MQ=255)

                                          tGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg                                                      >  1:2120946/1‑101 (MQ=255)

                                           ggCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                     >  1:10508233/1‑101 (MQ=255)

                                            gCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc                                                    <  1:4469021/101‑1 (MQ=255)

                                            gCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc                                                    <  1:5586933/101‑1 (MQ=255)

                                             cGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtca                                                   <  1:7523585/101‑1 (MQ=255)

                                              gTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcat                                                  >  1:272168/1‑101 (MQ=255)

                                              gTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcat                                                  >  1:8738284/1‑101 (MQ=255)

                                              gTTAGCCAGTGGCAAAAATAACAAT‑CCGGGAAGCACAGGAACAGCATCAATTAGGGAAGGAGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcat                                                  >  1:12851309/1‑101 (MQ=255)

                                               ttAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt                                                 >  1:4324599/1‑101 (MQ=255)

                                                tAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGATATTCTTCTCGGATGACTCAGtcattt                                                >  1:12610639/1‑101 (MQ=255)

                                                tAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                <  1:5397038/101‑1 (MQ=255)

                                                 aGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc                                               >  1:9425195/1‑101 (MQ=255)

                                                   ccAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                             <  1:3588259/101‑1 (MQ=255)

                                                      gTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc                                          >  1:8756718/1‑101 (MQ=255)

                                                       gtgCAAAAAAGACAATCCCGGGCA‑CACCGGAACAGCATCAATTAGGGAAGGTTCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttct                                         <  1:5607036/99‑1 (MQ=17)

                                                        ggCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                        <  1:9178686/101‑1 (MQ=255)

                                                         gCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc                                       >  1:11296311/1‑101 (MQ=255)

                                                          cAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                      >  1:11170943/1‑101 (MQ=255)

                                                          cAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                      >  1:1918464/1‑101 (MQ=255)

                                                           aaaaaTGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt                                     <  1:7462637/101‑1 (MQ=255)

                                                            aaaaTGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg                                    >  1:10039718/1‑101 (MQ=255)

                                                            aaaaTGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg                                    >  1:11692651/1‑101 (MQ=255)

                                                            aaaaTGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg                                    >  1:8953796/1‑101 (MQ=255)

                                                             aaaTGACAAT‑CCGGGCAGCACAGGAACAGGATTAATTAGGGAAGGTCCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                   <  1:505899/101‑1 (MQ=255)

                                                             aaaTGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                   >  1:8999233/1‑101 (MQ=255)

                                                              aaTGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt                                  >  1:1095020/1‑101 (MQ=255)

                                                               aTGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                 <  1:2871572/101‑1 (MQ=255)

                                                                tGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                >  1:8915097/1‑101 (MQ=255)

                                                                 gACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                               <  1:1424181/101‑1 (MQ=255)

                                                                   cAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc                             <  1:7378677/101‑1 (MQ=255)

                                                                    aaT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGcc                            <  1:10737411/101‑1 (MQ=255)

                                                                    aaT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGcc                            >  1:3248983/1‑101 (MQ=255)

                                                                     aT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCg                           <  1:8618399/101‑1 (MQ=255)

                                                                      t‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa                          <  1:6872458/101‑1 (MQ=255)

                                                                         cGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtt                        <  1:12541084/101‑1 (MQ=255)

                                                                          gggCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                       >  1:9332880/1‑101 (MQ=255)

                                                                          gggCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                       >  1:1607347/1‑101 (MQ=255)

                                                                           ggCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttt                      <  1:7587417/101‑1 (MQ=255)

                                                                           ggCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttt                      <  1:4967364/101‑1 (MQ=255)

                                                                           ggCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttt                      >  1:4914221/1‑101 (MQ=255)

                                                                            gcagcaCAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                     <  1:5249733/101‑1 (MQ=255)

                                                                            gcagcaCAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                     <  1:8075281/101‑1 (MQ=255)

                                                                            gcagcaCAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                     <  1:4596252/101‑1 (MQ=255)

                                                                              agcaCAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                   <  1:1203452/101‑1 (MQ=255)

                                                                               gcaCAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                  >  1:7033707/1‑101 (MQ=255)

                                                                                cacaGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc                 <  1:3742366/101‑1 (MQ=255)

                                                                                   aGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCg              <  1:4797056/101‑1 (MQ=255)

                                                                                   aGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCg              >  1:9485326/1‑101 (MQ=255)

                                                                                   aGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCg              >  1:3013325/1‑101 (MQ=255)

                                                                                   aGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCCCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCg              <  1:412187/101‑1 (MQ=255)

                                                                                    ggAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGt             >  1:2328536/1‑101 (MQ=255)

                                                                                     gAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTa            >  1:9906276/1‑101 (MQ=255)

                                                                                      gaCAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa           <  1:6188351/100‑1 (MQ=40)

                                                                                        cAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAt         <  1:1980452/101‑1 (MQ=39)

                                                                                        cAGCATCAACTAGGGAAGGTGCGCATAAGCGGGGAAATCCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAt         <  1:12680298/101‑1 (MQ=255)

                                                                                         aGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg        >  1:13386280/1‑101 (MQ=38)

                                                                                           cATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc      >  1:366940/1‑101 (MQ=35)

                                                                                            aTCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt     <  1:2220687/101‑1 (MQ=34)

                                                                                            aTCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt     <  1:8367228/101‑1 (MQ=34)

                                                                                             tCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt    >  1:13694552/1‑101 (MQ=33)

                                                                                             tCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt    <  1:8212616/101‑1 (MQ=33)

                                                                                               aaTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa  >  1:9104807/1‑101 (MQ=31)

TGATCGCCAGCGATGCATTTTCAGGTAGTAACAATCTCGACCTGGCGTTAGCCAGTGGCAAAAATGACAAT‑CCGGGCAGCACAGGAACAGCATCAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA  >  NC_007779/3365311‑3365505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.