New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_007779 | 3746911 = | NA (NA) | 301 (1.100) | 134/180 | NT | 100% | intergenic (‑509/‑68) | mdtL/insH | multidrug efflux system protein/IS5 element protein |
? | NC_007779 | = 3748646 | 0 (0.000) | intergenic (+687/+425) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
CCGCCGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGA > NC_007779/3746817‑3746921 | ccgccgGGGGAGGTATCAATCTTAAACAGGTCCCCCAGGAAAACCAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGaacac < 1:9691361/101‑4 (MQ=255) cgTGGGAGTTATCAATCTTAACAAGGCCCGCCGGAAATTCAAACAACCCCGGCGGGACCCCAAAGAACGAACGGGAAACAGCTAAGTAAGAGaacaccacc > 1:12465308/1‑94 (MQ=255) | CCGCCGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGA > NC_007779/3746817‑3746921 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |