New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 3987186 =NA (NA)279 (0.930) 138/178 NT 100% intergenic (‑732/‑31) slp/insH outer membrane lipoprotein/IS5 transposase and trans‑activator
?NC_007779 = 4009203 0 (0.000)coding (1379/1623 nt) yhiJ hypothetical protein

Only 100 of 289 total aligned reads displayed.

TGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGA  >  NC_007779/3987086‑3987278
                                                                                                     |                                                                                            
tGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaagg                                                                                              <  1:15198739/101‑1 (MQ=255)
 gTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaagga                                                                                             <  1:4409100/101‑1 (MQ=255)
  ttGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaaggaa                                                                                            <  1:4746416/101‑1 (MQ=255)
    gAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaaggaagg                                                                                          >  1:13636784/1‑101 (MQ=255)
     aaaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGt                                                                                         <  1:14294868/101‑1 (MQ=255)
     aaaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGt                                                                                         >  1:2796189/1‑101 (MQ=255)
     aaaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGt                                                                                         >  1:10422257/1‑101 (MQ=255)
     aaaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGt                                                                                         <  1:11378193/101‑1 (MQ=255)
     aaaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGt                                                                                         <  1:8684109/101‑1 (MQ=255)
      aaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTg                                                                                        <  1:15166758/101‑1 (MQ=255)
       aaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGc                                                                                       <  1:13260157/101‑1 (MQ=255)
        aTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCg                                                                                      <  1:9830236/101‑1 (MQ=255)
        aTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCg                                                                                      >  1:8268556/1‑101 (MQ=255)
         tAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGa                                                                                     <  1:13003042/101‑1 (MQ=255)
          aaaCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGaa                                                                                    <  1:6873778/101‑1 (MQ=255)
           aaCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAAc                                                                                   >  1:13706924/1‑101 (MQ=255)
           aaCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAAc                                                                                   >  1:9619344/1‑101 (MQ=255)
           aaCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGGGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAAc                                                                                   >  1:13539838/1‑101 (MQ=255)
            aCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACa                                                                                  <  1:9301150/101‑1 (MQ=255)
             ccTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACaa                                                                                 >  1:9363474/1‑101 (MQ=255)
              cTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAg                                                                                >  1:11912305/1‑101 (MQ=255)
              cTTCGATTTGTTTGTCAAGATATTGTCCATCATTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAg                                                                                >  1:8742854/1‑101 (MQ=255)
                 cGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTcc                                                                             >  1:2211962/1‑101 (MQ=255)
                     ttgtttgtCAAGATATTGTCCATCTTTATATAATTTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTg                                                                          <  1:208678/101‑1 (MQ=255)
                     ttgtttgtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGa                                                                         <  1:594909/101‑1 (MQ=255)
                      tgtttgtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGat                                                                        <  1:7221047/101‑1 (MQ=255)
                      tgtttgtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGat                                                                        >  1:13046008/1‑101 (MQ=255)
                      tgtttgtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGat                                                                        <  1:11236776/101‑1 (MQ=255)
                       gtttgtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGata                                                                       <  1:13369168/101‑1 (MQ=255)
                       gtttgtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGata                                                                       >  1:12530289/1‑101 (MQ=255)
                        tttgtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGatat                                                                      <  1:1559994/101‑1 (MQ=255)
                        tttgtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGatat                                                                      <  1:7831885/101‑1 (MQ=255)
                        tttgtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGatat                                                                      <  1:3472835/101‑1 (MQ=255)
                        tttgtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGatat                                                                      <  1:14203913/101‑1 (MQ=255)
                         ttgtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATg                                                                     >  1:3743642/1‑101 (MQ=255)
                          tgtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATga                                                                    >  1:3305723/1‑101 (MQ=255)
                          tgtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATga                                                                    <  1:9514939/101‑1 (MQ=255)
                           gtCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATgag                                                                   <  1:8024281/101‑1 (MQ=255)
                            tCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATgaga                                                                  >  1:7071704/1‑101 (MQ=255)
                             cAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAt                                                                 >  1:11597739/1‑101 (MQ=255)
                             cAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAt                                                                 >  1:4942858/1‑101 (MQ=255)
                             cAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAt                                                                 >  1:9198070/1‑101 (MQ=255)
                             cAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAt                                                                 >  1:13905585/1‑101 (MQ=255)
                               aGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCa                                                               <  1:13982398/101‑1 (MQ=255)
                                 atatTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATg                                                             <  1:10198004/101‑1 (MQ=255)
                                  tatTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGt                                                            >  1:9429315/1‑101 (MQ=255)
                                   atTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGtt                                                           >  1:14063464/1‑101 (MQ=255)
                                    ttGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGttt                                                          <  1:4116532/101‑1 (MQ=255)
                                     tGTCCATCTTTATATGA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTg                                                         <  1:11555078/101‑1 (MQ=255)
                                          aTCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATc                                                    >  1:15225645/1‑101 (MQ=255)
                                           tCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCt                                                   <  1:12462930/101‑1 (MQ=255)
                                            cTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAGGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTg                                                  >  1:4335533/1‑101 (MQ=255)
                                            cTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTg                                                  <  1:8102924/101‑1 (MQ=255)
                                            cTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTg                                                  >  1:9922748/1‑101 (MQ=255)
                                              ttATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGa                                                >  1:10048573/1‑101 (MQ=255)
                                              ttATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGa                                                >  1:3062921/1‑101 (MQ=255)
                                              ttATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGa                                                >  1:1808479/1‑101 (MQ=255)
                                               tatataA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAg                                               <  1:1270309/101‑1 (MQ=255)
                                                atataA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGc                                              >  1:9757282/1‑101 (MQ=255)
                                                    aa‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATa                                          <  1:6521640/101‑1 (MQ=255)
                                                    aa‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATa                                          <  1:1092667/101‑1 (MQ=255)
                                                     a‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAg                                         >  1:10829987/1‑101 (MQ=255)
                                                       tttGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGa                                        <  1:577059/101‑1 (MQ=255)
                                                       tttGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGa                                        <  1:13206476/101‑1 (MQ=255)
                                                       tttGGGGGTAGGGCGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGa                                        >  1:12952125/1‑101 (MQ=255)
                                                            gggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAgg                                   <  1:1591489/101‑1 (MQ=255)
                                                              gTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGt                                 <  1:8967566/101‑1 (MQ=255)
                                                                aGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtc                               <  1:5056173/101‑1 (MQ=255)
                                                                 gggTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtca                              >  1:4600934/1‑101 (MQ=255)
                                                                 gggTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtca                              >  1:2311556/1‑101 (MQ=255)
                                                                  ggTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtcat                             <  1:14102911/101‑1 (MQ=255)
                                                                    tgtTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtcatca                           >  1:5224645/1‑101 (MQ=255)
                                                                     gtTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                          >  1:1232458/1‑101 (MQ=255)
                                                                     gtTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                          >  1:1849135/1‑101 (MQ=255)
                                                                      ttCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATg                         <  1:9885726/101‑1 (MQ=255)
                                                                       tCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGa                        <  1:5984656/101‑1 (MQ=255)
                                                                        cTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAg                       >  1:12096847/1‑101 (MQ=255)
                                                                        cTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAg                       <  1:3320555/101‑1 (MQ=255)
                                                                        cTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAg                       >  1:6198798/1‑101 (MQ=255)
                                                                         tttATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGt                      >  1:7366017/1‑101 (MQ=255)
                                                                          ttATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtc                     >  1:14486377/1‑101 (MQ=255)
                                                                           tATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtca                    >  1:15339585/1‑101 (MQ=255)
                                                                           tATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtca                    >  1:10268799/1‑101 (MQ=255)
                                                                             tGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatc                  <  1:8323359/101‑1 (MQ=255)
                                                                             tGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatc                  >  1:11780250/1‑101 (MQ=255)
                                                                                aaaaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAAc               <  1:3950524/101‑1 (MQ=255)
                                                                                aaaaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAAc               >  1:8409135/1‑101 (MQ=255)
                                                                                 aaaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACt              >  1:1967581/1‑101 (MQ=255)
                                                                                  aaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACtt             >  1:7570796/1‑101 (MQ=40)
                                                                                  aaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACtt             <  1:8905001/101‑1 (MQ=40)
                                                                                   aaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTa            >  1:2546596/1‑101 (MQ=40)
                                                                                   aaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTa            <  1:13412705/101‑1 (MQ=40)
                                                                                    aaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTAc           >  1:4231755/1‑101 (MQ=39)
                                                                                      aTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCt         <  1:6603596/101‑1 (MQ=37)
                                                                                      aTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCt         <  1:14726279/101‑1 (MQ=37)
                                                                                      aTAGTGGCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCt         <  1:6322869/101‑1 (MQ=21)
                                                                                       tAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCtt        >  1:9557846/1‑101 (MQ=35)
                                                                                           gtCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGcc    <  1:10656059/101‑1 (MQ=32)
                                                                                            tCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCg   >  1:2061232/1‑101 (MQ=31)
                                                                                             cACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGa  >  1:6404326/1‑101 (MQ=11)
                                                                                                     |                                                                                            
TGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAA‑TTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGA  >  NC_007779/3987086‑3987278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.