BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 1672780	0 (0.000)	276 (0.920)	128/180	NT	100%	intergenic (+114/‑310)	ynfM/asr	transporter/acid shock‑inducible periplasmic protein
*	?	NC_007779	1980209 =	NA (NA)	276 (0.920)	128/180	NT	100%	intergenic (‑289/+146)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein

Only 100 of 232 total aligned reads displayed.

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAA  >  NC_007779/1980109‑1980304

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagg                                                                                                >  1:9376489/1‑101 (MQ=255)

   cGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaa                                                                                              >  1:13490653/1‑101 (MQ=255)

   cGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaa                                                                                              <  1:7097064/101‑1 (MQ=255)

   cGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaa                                                                                              <  1:12140496/101‑1 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaag                                                                                             <  1:12464178/101‑1 (MQ=255)

     cAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaagg                                                                                            <  1:10177628/101‑1 (MQ=255)

     cAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaagg                                                                                            <  1:166650/101‑1 (MQ=255)

        cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGc                                                                                         >  1:6302441/1‑101 (MQ=255)

         tctACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCg                                                                                        <  1:14396293/99‑1 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCg                                                                                        <  1:13618726/101‑1 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCg                                                                                        <  1:10013851/101‑1 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGa                                                                                       >  1:5204302/1‑101 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGa                                                                                       >  1:5872171/1‑101 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTAAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGa                                                                                       <  1:11252822/101‑1 (MQ=255)

           tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGaa                                                                                      >  1:14173481/1‑101 (MQ=255)

           tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGaa                                                                                      <  1:4038129/101‑1 (MQ=255)

            aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAAt                                                                                     <  1:7870361/101‑1 (MQ=255)

            aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAAt                                                                                     >  1:10420668/1‑101 (MQ=255)

             cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATa                                                                                    <  1:10324212/101‑1 (MQ=255)

              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATaa                                                                                   >  1:10832723/1‑101 (MQ=255)

              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATaa                                                                                   <  1:7414643/101‑1 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAg                                                                                  <  1:6634465/101‑1 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAg                                                                                  <  1:8425365/101‑1 (MQ=255)

                gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGc                                                                                 <  1:7810163/101‑1 (MQ=255)

                 tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCg                                                                                <  1:4821290/101‑1 (MQ=255)

                  cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCgg                                                                               <  1:13831154/101‑1 (MQ=255)

                   aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCggg                                                                              >  1:5536732/1‑101 (MQ=255)

                      acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTCATGCAGATCCCACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGaa                                                                           >  1:3914684/1‑101 (MQ=255)

                       cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGaaa                                                                          >  1:6168172/1‑101 (MQ=255)

                        ccGCACATAAAAGGGAGGGGGGCGGGGATTTTCAATAAGGCGTGATGCAGATAACAAAAAACACTAAATTACTAAAGGAAGGTGCAAATAAGCGGGGAAAt                                                                         <  1:5791937/100‑1 (MQ=255)

                         cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCACTTACTTAAGGAAGGGGCGAATAAGCGGCGAAAtt                                                                        >  1:13901576/1‑101 (MQ=255)

                          gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                       >  1:2542859/1‑101 (MQ=255)

                          gCACATACAACGGAGGGGGGCTGCGATTTTAAATAATGCGTGATGCAGATCACAAAAAACACTCAATTACTAAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                       <  1:8219557/101‑1 (MQ=39)

                          ccacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                       <  1:8287741/100‑1 (MQ=255)

                           cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttct                                                                      <  1:14922047/101‑1 (MQ=255)

                           cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttct                                                                      >  1:8815033/1‑101 (MQ=255)

                            acaTACAACGGAGGGGGGCTGCGTTTTTAAATAATGCGTGCTGCAGATCACAAAAAACCCTCAATTACTAAAGGAGGGTGCGAATAAGCGGGGAAAttctt                                                                     <  1:11160981/101‑1 (MQ=37)

                             caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                    >  1:9663932/1‑101 (MQ=255)

                             caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                    <  1:12173071/101‑1 (MQ=255)

                             caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGAAGAAGATCACACAAAACCCTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                    <  1:11300868/101‑1 (MQ=255)

                              aTACAACGGAGGTGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATtcttct                                                                   >  1:2915022/1‑101 (MQ=255)

                              aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATtcttct                                                                   >  1:4989777/1‑101 (MQ=255)

                               tACAGCGGGGGGGGACTTTGATTTTCAAAAGCGCGTGGGGAAGATCACAAAAAACCCGAAACTTCTAAAGGAAGGTGCAAATAAGCGGGGAAATTCTtctc                                                                  <  1:7654934/101‑1 (MQ=9)

                                aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                                                                 <  1:14546140/101‑1 (MQ=255)

                                aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                                                                 <  1:2020520/101‑1 (MQ=255)

                                 cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                >  1:1413030/1‑101 (MQ=255)

                                   aCGGGGGGGGGCTGCGATTTTAAAAAAGGGGGGAGGCAGATCACACAAAACACTAAATTACTAAAGGAAGGGGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                              <  1:2994489/101‑1 (MQ=21)

                                   aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                              <  1:1056590/101‑1 (MQ=255)

                                    cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                             >  1:14784181/1‑101 (MQ=255)

                                    cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                             >  1:7309027/1‑101 (MQ=255)

                                    cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                             >  1:3351590/1‑101 (MQ=255)

                                     ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGa                                                            >  1:6989020/1‑101 (MQ=255)

                                     ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGa                                                            <  1:8896128/101‑1 (MQ=255)

                                     ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGa                                                            >  1:1913249/1‑101 (MQ=255)

                                      ggggggggCTGCGATTTAAAATAATGCGGGATGAAGATCACACAAAACACTAAATTACTAAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                                                           <  1:899252/99‑1 (MQ=25)

                                           gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                      >  1:3456375/1‑101 (MQ=255)

                                           gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                      >  1:347727/1‑101 (MQ=255)

                                           ggcttggaaTTTTAAAAAATGCGTGATGCAGACCAACAAAAACCCTAAATTACTAAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                      <  1:3258341/93‑1 (MQ=17)

                                              cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcat                                                   >  1:4397640/1‑101 (MQ=255)

                                                gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                 >  1:2419769/1‑101 (MQ=255)

                                                gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                 >  1:13227649/1‑101 (MQ=255)

                                                 cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc                                                >  1:7591319/1‑101 (MQ=255)

                                                 cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc                                                >  1:12656452/1‑101 (MQ=255)

                                                  gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                               >  1:6704293/1‑101 (MQ=255)

                                                    ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt                                             >  1:6586187/1‑101 (MQ=255)

                                                       tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttct                                          <  1:2193821/101‑1 (MQ=255)

                                                         aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc                                        >  1:2097438/1‑101 (MQ=255)

                                                         aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc                                        >  1:6155814/1‑101 (MQ=255)

                                                            aaggggtaaTGAAGATCACAAAAAACCCAAAATTACTAAGGGAAGGTCCAAAAAAGGGGGAAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg                                     <  1:13387148/93‑1 (MQ=9)

                                                              tGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt                                   >  1:8958026/1‑101 (MQ=255)

                                                               gCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                  >  1:3419617/1‑101 (MQ=255)

                                                                cGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                 >  1:15105772/1‑101 (MQ=255)

                                                                  tGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg                               >  1:4923471/1‑101 (MQ=255)

                                                                   tacgtataTCACACAAACCTCTCAATTCCGTAAGTAATCTGCGATTATGCGCGGAAATTCTTCTCTGCTCACTCATTCATTTCATTTCTTCATGTTTGAGc                              <  1:15323970/94‑1 (MQ=9)

                                                                      gCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa                           >  1:11460735/1‑101 (MQ=255)

                                                                         gATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                        >  1:8545322/1‑101 (MQ=255)

                                                                             acacaAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                    >  1:15234801/1‑101 (MQ=255)

                                                                               acaAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc                  >  1:4262658/1‑101 (MQ=255)

                                                                               acaAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc                  >  1:12611648/1‑101 (MQ=255)

                                                                               acaAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc                  >  1:1435348/1‑101 (MQ=255)

                                                                                caAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTcc                 >  1:10629255/1‑101 (MQ=255)

                                                                                caAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTcc                 >  1:9600497/1‑101 (MQ=255)

                                                                                 aaaaCACTAAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                <  1:3633261/101‑1 (MQ=255)

                                                                                  aaaCACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCg               >  1:6408810/1‑101 (MQ=255)

                                                                                     cacTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa            >  1:2084612/1‑101 (MQ=40)

                                                                                      acTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa           >  1:7229238/1‑101 (MQ=40)

                                                                                      acTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa           >  1:8089284/1‑101 (MQ=40)

                                                                                        tCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg         >  1:4133103/1‑101 (MQ=38)

                                                                                        tCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg         >  1:2252878/1‑101 (MQ=38)

                                                                                         cAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc        >  1:1752303/1‑101 (MQ=37)

                                                                                         cAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc        >  1:12212754/1‑101 (MQ=37)

                                                                                           aTTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt      >  1:5495248/1‑101 (MQ=34)

                                                                                            ttACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAGTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt     >  1:11985362/1‑101 (MQ=18)

                                                                                            ttACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt     >  1:2493828/1‑101 (MQ=33)

                                                                                            ttACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt     >  1:2749157/1‑101 (MQ=33)

                                                                                            ttACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt     >  1:4622626/1‑101 (MQ=33)

                                                                                             tACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg    >  1:8268690/1‑101 (MQ=32)

                                                                                             tACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg    >  1:2972888/1‑101 (MQ=32)

                                                                                              aCTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa   >  1:11620842/1‑101 (MQ=31)

                                                                                               cTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa  >  1:3383126/1‑101 (MQ=11)

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAA  >  NC_007779/1980109‑1980304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.